The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP032527	Bacillus megaterium NCT-2 chromosome, complete genome	5193616	269087	279544	5193616		Bacillus_phage(33.33%)	8	NA	NA
AYE48505.1|269087_270452_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	52.1	1.5e-121
AYE48506.1|270639_271926_+	adenylosuccinate synthase	NA	A0A2P1EKE7	Megavirus	35.9	2.1e-69
AYE48507.1|272695_273403_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	42.0	2.4e-46
AYE48508.1|273409_275317_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	36.4	3.8e-38
AYE48509.1|275307_276675_+	hypothetical protein	NA	NA	NA	NA	NA
AYE48510.1|276661_277441_+	regulator	NA	NA	NA	NA	NA
AYE48511.1|277459_278254_+	MBL fold metallo-hydrolase	NA	A0A2I7SDH3	Paenibacillus_phage	36.0	5.4e-39
AYE53200.1|278311_279544_+	PDZ domain-containing protein	NA	A0A1B1IRD3	uncultured_Mediterranean_phage	30.1	8.1e-10
>prophage 2
CP032527	Bacillus megaterium NCT-2 chromosome, complete genome	5193616	1138552	1147826	5193616		Bacillus_phage(33.33%)	8	NA	NA
AYE49351.1|1138552_1139269_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	42.2	1.7e-47
AYE49352.1|1139268_1141041_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	26.0	6.4e-24
AYE49353.1|1141182_1141872_+	LysM peptidoglycan-binding domain-containing protein	NA	Q8SBN9	Clostridium_phage	42.1	5.2e-14
AYE49354.1|1141905_1143480_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	30.2	1.0e-28
AYE49355.1|1144075_1144651_+	ECF transporter S component	NA	NA	NA	NA	NA
AYE49356.1|1144729_1144978_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	54.1	3.6e-18
AYE49357.1|1145235_1146285_+	recombinase RecQ	NA	NA	NA	NA	NA
AYE49358.1|1146308_1147826_+	ATP-dependent DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	31.1	1.7e-54
>prophage 3
CP032527	Bacillus megaterium NCT-2 chromosome, complete genome	5193616	3235501	3243713	5193616		Bacillus_virus(66.67%)	7	NA	NA
AYE51407.1|3235501_3237913_-	peptidase S8	NA	A0A217EQY2	Bacillus_phage	36.9	1.6e-17
AYE51408.1|3238652_3239090_-	RNA-binding protein S1	NA	NA	NA	NA	NA
AYE51409.1|3239271_3240093_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	64.1	1.1e-92
AYE51410.1|3240127_3240808_-	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	G3MA22	Bacillus_virus	42.8	1.9e-40
AYE51411.1|3240823_3242293_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	48.4	1.1e-114
AYE51412.1|3242316_3242865_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	43.9	2.3e-33
AYE51413.1|3242936_3243713_-	NUDIX domain-containing protein	NA	A0A0E3JJF3	Streptomyces_phage	41.9	6.7e-10
>prophage 4
CP032527	Bacillus megaterium NCT-2 chromosome, complete genome	5193616	5173491	5181753	5193616		Synechococcus_phage(50.0%)	8	NA	NA
AYE53182.1|5173491_5174070_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.2	1.3e-29
AYE53183.1|5174066_5175104_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F0L1	Synechococcus_phage	45.6	1.7e-69
AYE53184.1|5175130_5176546_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	4.3e-55
AYE53185.1|5176521_5178753_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	1.2e-157
AYE53186.1|5178736_5179423_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AYE53187.1|5179419_5179671_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AYE53188.1|5179678_5180386_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3FGF0	Synechococcus_phage	40.2	1.2e-42
AYE53189.1|5180460_5181753_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	25.5	5.9e-19
>prophage 1
CP032528	Bacillus megaterium NCT-2 plasmid pNCT2_1, complete sequence	132087	75861	129362	132087	transposase	Bacillus_phage(33.33%)	47	NA	NA
AYE53405.1|75861_76401_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	65.4	1.4e-59
AYE53406.1|76393_76567_-	hypothetical protein	NA	A0A1P8CWP5	Bacillus_phage	64.3	8.3e-14
AYE53407.1|77614_77872_+	hypothetical protein	NA	NA	NA	NA	NA
AYE53408.1|79067_79505_+	hypothetical protein	NA	NA	NA	NA	NA
AYE53409.1|79552_79828_+	hypothetical protein	NA	NA	NA	NA	NA
AYE53410.1|80577_82377_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	37.7	3.2e-87
AYE53451.1|82572_83856_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
AYE53411.1|83913_84948_+	hypothetical protein	NA	NA	NA	NA	NA
AYE53452.1|85061_86015_+	DUF3991 domain-containing protein	NA	NA	NA	NA	NA
AYE53412.1|86007_86646_+	restriction endonuclease	NA	NA	NA	NA	NA
AYE53413.1|87084_87645_+	L,D-transpeptidase	NA	NA	NA	NA	NA
AYE53453.1|87754_87973_+	hypothetical protein	NA	NA	NA	NA	NA
AYE53414.1|88026_88338_+	hypothetical protein	NA	NA	NA	NA	NA
AYE53415.1|88534_88816_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	A0A2I7SC16	Paenibacillus_phage	70.8	2.8e-11
AYE53416.1|88956_89436_-	hypothetical protein	NA	NA	NA	NA	NA
AYE53417.1|90112_90676_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA	NA
AYE53418.1|91531_91759_-	hypothetical protein	NA	NA	NA	NA	NA
AYE53419.1|92159_92366_-	hypothetical protein	NA	NA	NA	NA	NA
AYE53420.1|92754_93936_+|transposase	IS256-like element ISBame1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	27.0	8.5e-33
AYE53421.1|94378_95056_+	DUF421 domain-containing protein	NA	NA	NA	NA	NA
AYE53422.1|95185_95767_-	hypothetical protein	NA	NA	NA	NA	NA
AYE53423.1|96048_96747_+	DUF421 domain-containing protein	NA	NA	NA	NA	NA
AYE53454.1|97521_98076_-	HPP family protein	NA	NA	NA	NA	NA
AYE53424.1|98527_98809_-	hypothetical protein	NA	NA	NA	NA	NA
AYE53425.1|99529_100477_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYE53426.1|100847_101129_-	exonuclease	NA	NA	NA	NA	NA
AYE53427.1|101756_101984_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYE53428.1|102581_103802_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
AYE53429.1|104371_104899_+	adenylate kinase DNA topology modulator	NA	NA	NA	NA	NA
AYE53430.1|105081_106232_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	40.3	1.6e-47
AYE53431.1|106302_107650_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	61.9	4.8e-88
AYE53432.1|108356_109571_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
AYE53433.1|110514_110787_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	63.3	4.1e-23
AYE53434.1|111775_112165_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
AYE53435.1|112607_113033_+	hypothetical protein	NA	NA	NA	NA	NA
AYE53436.1|113320_114058_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AYE53437.1|114413_115274_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AYE53438.1|115691_116468_+	hypothetical protein	NA	NA	NA	NA	NA
AYE53439.1|116882_118505_+	spore germination protein	NA	NA	NA	NA	NA
AYE53440.1|118494_119724_+	Ger(x)C family spore germination protein	NA	NA	NA	NA	NA
AYE53441.1|119745_120858_+	spore gernimation protein KB	NA	NA	NA	NA	NA
AYE53442.1|121064_122165_+	spore gernimation protein KB	NA	NA	NA	NA	NA
AYE53443.1|122649_123821_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	36.5	1.1e-40
AYE53444.1|123828_124101_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	A0A2I7SC16	Paenibacillus_phage	60.3	1.6e-11
AYE53445.1|125416_125608_-	hypothetical protein	NA	NA	NA	NA	NA
AYE53446.1|125631_126465_-	DUF2935 domain-containing protein	NA	A0A0G2Y5W0	Acanthamoeba_polyphaga_mimivirus	25.4	8.8e-08
AYE53447.1|127820_129362_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	25.8	2.4e-27
>prophage 1
CP032531	Bacillus megaterium NCT-2 plasmid pNCT2_3, complete sequence	119712	30661	42329	119712		Catovirus(37.5%)	11	NA	NA
AYE53611.1|30661_31387_-	glycosyltransferase	NA	A0A1V0S9B9	Catovirus	26.4	2.5e-06
AYE53612.1|31746_32661_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A222YY99	Synechococcus_phage	25.4	3.3e-24
AYE53613.1|32885_34103_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AYE53614.1|34234_35146_+	NAD-dependent epimerase/dehydratase family protein	NA	M4QPK0	Synechococcus_phage	34.0	2.4e-35
AYE53615.1|35348_35972_+	peptidase	NA	A0A1V0SAM1	Catovirus	32.0	1.4e-05
AYE53616.1|36358_36556_+	hypothetical protein	NA	NA	NA	NA	NA
AYE53617.1|36793_37618_-	SDR family oxidoreductase	NA	A0A2P1ELT6	Moumouvirus	34.2	1.7e-32
AYE53618.1|37618_38605_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI8	Catovirus	32.3	1.1e-44
AYE53619.1|38597_39689_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A2P1ELS7	Moumouvirus	47.8	3.0e-93
AYE53620.1|40108_40804_-	peptidase	NA	NA	NA	NA	NA
AYE53621.1|41168_42329_-	peptidase S8	NA	A0A1B0T6A2	Bacillus_phage	51.2	2.2e-97
>prophage 1
CP032534	Bacillus megaterium NCT-2 plasmid pNCT2_6, complete sequence	57761	34737	43751	57761	transposase	Bacillus_phage(40.0%)	12	NA	NA
AYE53854.1|34737_35643_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.3	1.4e-19
AYE53855.1|35916_36096_+	hypothetical protein	NA	NA	NA	NA	NA
AYE53856.1|36287_36659_+	hypothetical protein	NA	A0A1P8CWP4	Bacillus_phage	43.4	2.4e-18
AYE53857.1|36672_37005_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	36.7	3.1e-09
AYE53858.1|37270_37456_+	hypothetical protein	NA	A0A1P8CWV7	Bacillus_phage	61.4	3.8e-12
AYE53859.1|37637_38039_-	transcriptional regulator Spx	NA	M1PLC0	Streptococcus_phage	30.3	2.7e-07
AYE53860.1|38601_38811_+	small, acid-soluble spore protein C4	NA	A0A1P8CX76	Bacillus_phage	71.4	3.4e-17
AYE53861.1|38947_40075_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	47.2	7.5e-87
AYE53862.1|40633_40933_+	hypothetical protein	NA	NA	NA	NA	NA
AYE53863.1|40945_42079_+	chromosome partitioning protein ParA	NA	Q0H250	Geobacillus_phage	34.4	8.1e-57
AYE53864.1|42075_42771_+	hypothetical protein	NA	Q0H249	Geobacillus_phage	38.0	2.0e-34
AYE53865.1|42863_43751_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	40.7	1.2e-42
