assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_000463345.3_ASM46334v3	CP025084	Serratia sp. ATCC 39006 chromosome, complete genome	1	1085808-1089010	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f,csa3,DinG,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	Type I-E	GTGTTCCCCGCACCCGCGGGGATAAACCG,GTGTTCCCCGCACCCGCGGGGATAAACCG,GTGTTCCCCGCACCCGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	51,52,52	52	TypeI-E	cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f,csa3,DinG,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	NA,NA	NA|312aa|up_9|CP025084.1_1074798_1075734_-	PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional	NA|240aa|up_8|CP025084.1_1076058_1076778_+	pfam04519, Bactofilin, Polymer-forming cytoskeletal	cas3|915aa|up_7|CP025084.1_1077063_1079808_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|514aa|up_6|CP025084.1_1079874_1081416_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|208aa|up_5|CP025084.1_1081408_1082032_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP025084.1_1082034_1083093_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|245aa|up_3|CP025084.1_1083104_1083839_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|216aa|up_2|CP025084.1_1083838_1084486_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|308aa|up_1|CP025084.1_1084509_1085433_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP025084.1_1085429_1085723_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|151aa|down_0|CP025084.1_1089236_1089689_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|214aa|down_1|CP025084.1_1089709_1090351_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|155aa|down_2|CP025084.1_1090355_1090820_-	PRK11121, nrdG, anaerobic ribonucleoside-triphosphate reductase-activating protein	NA|713aa|down_3|CP025084.1_1091014_1093153_-	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|301aa|down_4|CP025084.1_1093531_1094434_+	pfam02574, S-methyl_trans, Homocysteine S-methyltransferase	NA|514aa|down_5|CP025084.1_1094508_1096050_+	cd08503, PBP2_NikA_DppA_OppA_like_17, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|314aa|down_6|CP025084.1_1096112_1097054_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|274aa|down_7|CP025084.1_1097123_1097945_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|528aa|down_8|CP025084.1_1097937_1099521_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|246aa|down_9|CP025084.1_1099540_1100278_-	cd03765, proteasome_beta_bacterial, Bacterial proteasome, beta subunit
GCA_000463345.3_ASM46334v3	CP025084	Serratia sp. ATCC 39006 chromosome, complete genome	2	1435404-1438854	2,2,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f,csa3,DinG,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28,28	0	0	NA	NA	I-F:I-F:I-F:I-F	54,57,57,54	57	TypeI-F	cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f,csa3,DinG,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	NA,NA	NA|944aa|up_9|CP025084.1_1418942_1421774_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|140aa|up_8|CP025084.1_1421798_1422218_+	pfam01894, UPF0047, Uncharacterized protein family UPF0047	NA|533aa|up_7|CP025084.1_1422311_1423910_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|566aa|up_6|CP025084.1_1424988_1426686_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	cas6f|185aa|up_5|CP025084.1_1426972_1427527_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|336aa|up_4|CP025084.1_1427536_1428544_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|312aa|up_3|CP025084.1_1428554_1429490_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|445aa|up_2|CP025084.1_1429486_1430821_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1095aa|up_1|CP025084.1_1430844_1434129_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|327aa|up_0|CP025084.1_1434125_1435106_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|398aa|down_0|CP025084.1_1438945_1440139_-	PRK09257, PRK09257, aromatic amino acid transaminase	NA|205aa|down_1|CP025084.1_1440204_1440819_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|160aa|down_2|CP025084.1_1441065_1441545_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|255aa|down_3|CP025084.1_1442095_1442860_+	cd01069, PBP2_PheC, Cyclohexadienyl dehydratase, a member of the type 2 periplasmic binding fold protein superfamily	NA|83aa|down_4|CP025084.1_1443111_1443360_+	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|360aa|down_5|CP025084.1_1443523_1444603_-	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|468aa|down_6|CP025084.1_1444620_1446024_-	PRK08006, PRK08006, replicative DNA helicase DnaB	NA|330aa|down_7|CP025084.1_1446148_1447138_+	PRK10754, PRK10754, NADPH:quinone reductase	NA|74aa|down_8|CP025084.1_1447458_1447680_-	PRK09459, pspG, envelope stress response protein PspG	NA|346aa|down_9|CP025084.1_1447857_1448895_-	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA
GCA_000463345.3_ASM46334v3	CP025084	Serratia sp. ATCC 39006 chromosome, complete genome	4	4375925-4376651	4,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f,csa3,DinG,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	Type III-B,Type III-D,Type III-A,Type III-C	GTCCTTACGGACGCTCCCTGACTGAAGGGATTAAGAC,GTCCTTACGGACGCTCCCTGACTGAAGGGATTAAGAC,NGTCCTTACGGACGCTCCCTGACTGAAGGGATTAAGAC	37,37,38	0	0	NA	NA	NA:NA:NA	9,9,10	10	TypeIII-B,TypeIII-D,TypeIII-A,TypeIII-C	cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f,csa3,DinG,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	NA|97aa|up_7|CP025084.1_4369584_4369875_-,NA|74aa|up_5|CP025084.1_4371879_4372101_-,NA|213aa|up_3|CP025084.1_4372701_4373340_-,NA|112aa|up_2|CP025084.1_4373327_4373663_-,csm4gr5|327aa|down_3|CP025084.1_4380401_4381382_+,PD-DExK|251aa|down_6|CP025084.1_4384030_4384783_-,NA|91aa|down_7|CP025084.1_4385969_4386242_+,NA|118aa|down_9|CP025084.1_4387821_4388175_-	NA|1208aa|up_9|CP025084.1_4364058_4367682_-	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases	NA|507aa|up_8|CP025084.1_4368025_4369546_+	pfam00665, rve, Integrase core domain	NA|97aa|up_7|CP025084.1_4369584_4369875_-	NA	NA|308aa|up_6|CP025084.1_4369929_4370853_-	pfam12835, Integrase_1, Integrase	NA|74aa|up_5|CP025084.1_4371879_4372101_-	NA	NA|74aa|up_4|CP025084.1_4372267_4372489_-	cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin	NA|213aa|up_3|CP025084.1_4372701_4373340_-	NA	NA|112aa|up_2|CP025084.1_4373327_4373663_-	NA	cas1|294aa|up_1|CP025084.1_4374502_4375384_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|145aa|up_0|CP025084.1_4375238_4375673_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas10|817aa|down_0|CP025084.1_4376784_4379235_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|128aa|down_1|CP025084.1_4379259_4379643_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|249aa|down_2|CP025084.1_4379655_4380402_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|327aa|down_3|CP025084.1_4380401_4381382_+	NA	csm5gr7|560aa|down_4|CP025084.1_4381378_4383058_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas6|308aa|down_5|CP025084.1_4383054_4383978_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	PD-DExK|251aa|down_6|CP025084.1_4384030_4384783_-	NA	NA|91aa|down_7|CP025084.1_4385969_4386242_+	NA	NA|510aa|down_8|CP025084.1_4386280_4387810_-	pfam07916, TraG_N, TraG-like protein, N-terminal region	NA|118aa|down_9|CP025084.1_4387821_4388175_-	NA
GCA_000463345.3_ASM46334v3	CP025084	Serratia sp. ATCC 39006 chromosome, complete genome	5	4385117-4385714	5,5,4	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f,csa3,DinG,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	Type III-B,Type III-D,Type III-A,Type III-C	GTCCGTAAGGACGTTCCCTGACTGAAGGGATTAAGAC,GTCCGTAAGGACGTTCCCTGACTGAAGGGATTAAGAC,GTCCGTAAGGACGTTCCCTGACTGAAGGGATTAAGAC	37,37,37	0	0	NA	NA	NA:NA:NA	7,8,8	8	TypeIII-B,TypeIII-D,TypeIII-A,TypeIII-C	cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f,csa3,DinG,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	NA|112aa|up_9|CP025084.1_4373327_4373663_-,csm4gr5|327aa|up_3|CP025084.1_4380401_4381382_+,PD-DExK|251aa|up_0|CP025084.1_4384030_4384783_-,NA|91aa|down_0|CP025084.1_4385969_4386242_+,NA|118aa|down_2|CP025084.1_4387821_4388175_-,NA|133aa|down_8|CP025084.1_4391954_4392353_-	NA|112aa|up_9|CP025084.1_4373327_4373663_-	NA	cas1|294aa|up_8|CP025084.1_4374502_4375384_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|145aa|up_7|CP025084.1_4375238_4375673_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas10|817aa|up_6|CP025084.1_4376784_4379235_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|128aa|up_5|CP025084.1_4379259_4379643_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|249aa|up_4|CP025084.1_4379655_4380402_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|327aa|up_3|CP025084.1_4380401_4381382_+	NA	csm5gr7|560aa|up_2|CP025084.1_4381378_4383058_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas6|308aa|up_1|CP025084.1_4383054_4383978_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	PD-DExK|251aa|up_0|CP025084.1_4384030_4384783_-	NA	NA|91aa|down_0|CP025084.1_4385969_4386242_+	NA	NA|510aa|down_1|CP025084.1_4386280_4387810_-	pfam07916, TraG_N, TraG-like protein, N-terminal region	NA|118aa|down_2|CP025084.1_4387821_4388175_-	NA	NA|473aa|down_3|CP025084.1_4388171_4389590_-	TIGR03755, conj_TIGR03755, integrating conjugative element protein, PFL_4711 family	NA|325aa|down_4|CP025084.1_4389600_4390575_-	TIGR03756, conj_TIGR03756, integrating conjugative element protein, PFL_4710 family	NA|135aa|down_5|CP025084.1_4390571_4390976_-	TIGR03757, conj_TIGR03757, integrating conjugative element protein, PFL_4709 family	NA|84aa|down_6|CP025084.1_4391277_4391529_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|96aa|down_7|CP025084.1_4391525_4391813_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|133aa|down_8|CP025084.1_4391954_4392353_-	NA	NA|940aa|down_9|CP025084.1_4392349_4395169_-	TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706 family
