The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025800	Yersinia ruckeri strain SC09 chromosome, complete genome	3799871	1621877	1657446	3799871	tail,plate,tRNA	Prochlorococcus_phage(25.0%)	27	NA	NA
AUQ41778.1|1621877_1622825_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.0	1.9e-06
AUQ41779.1|1622849_1623362_-	peptide deformylase	NA	NA	NA	NA	NA
AUQ41780.1|1623494_1624616_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
AUQ41781.1|1624587_1625061_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
AUQ43682.1|1625102_1625639_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ41782.1|1625645_1626215_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	S4VW33	Pandoravirus	30.4	5.4e-09
AUQ41783.1|1626224_1627046_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
AUQ41784.1|1627122_1627665_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
AUQ41785.1|1634582_1635512_+	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
AUQ41786.1|1635896_1637495_+	malate synthase A	NA	NA	NA	NA	NA
AUQ41787.1|1637525_1638833_+	isocitrate lyase	NA	NA	NA	NA	NA
AUQ41788.1|1638909_1640637_+	bifunctional isocitrate dehydrogenase kinase/phosphatase	NA	NA	NA	NA	NA
AUQ41789.1|1640904_1641744_-	acetate operon transcriptional repressor IclR	NA	NA	NA	NA	NA
AUQ41790.1|1641992_1645673_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	84.1	1.8e-25
AUQ41791.1|1645851_1646241_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ41792.1|1646378_1647503_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ41793.1|1647817_1648630_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUQ41794.1|1648616_1648865_-	hypothetical protein	NA	A0A0U2RK18	Escherichia_phage	61.0	1.1e-09
AUQ43683.1|1649780_1650230_+|tail	phage tail protein	tail	NA	NA	NA	NA
AUQ41795.1|1650267_1651338_+|tail	phage tail sheath family protein	tail	NA	NA	NA	NA
AUQ41796.1|1651361_1652762_+|tail	phage tail sheath family protein	tail	NA	NA	NA	NA
AUQ41797.1|1652829_1654059_+|tail	phage tail sheath family protein	tail	NA	NA	NA	NA
AUQ41798.1|1654074_1654533_+|tail	phage tail protein	tail	NA	NA	NA	NA
AUQ41799.1|1654529_1654712_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ41800.1|1654708_1655401_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ41801.1|1655397_1657014_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ41802.1|1657023_1657446_+|plate	phage baseplate protein	plate	NA	NA	NA	NA
>prophage 2
CP025800	Yersinia ruckeri strain SC09 chromosome, complete genome	3799871	2592315	2638098	3799871	tail,head,holin,portal,protease,terminase,capsid,plate	Salmonella_phage(32.56%)	62	NA	NA
AUQ42535.1|2592315_2593461_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	A0A2H4JAN9	uncultured_Caudovirales_phage	26.8	5.6e-05
AUQ42536.1|2593865_2594858_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AUQ42537.1|2594967_2595210_-	DinI family protein	NA	K7PKR6	Enterobacteria_phage	69.7	1.2e-23
AUQ42538.1|2595706_2595910_-	DUF1883 domain-containing protein	NA	NA	NA	NA	NA
AUQ42539.1|2596398_2597577_-	recombinase	NA	A0A2D1GN00	Marinobacter_phage	30.4	3.2e-32
AUQ42540.1|2597580_2597799_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ42541.1|2597856_2598426_-	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	67.2	1.7e-66
AUQ42542.1|2598426_2598609_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ42543.1|2598605_2599142_-	hypothetical protein	NA	A5LH62	Enterobacteria_phage	60.8	1.6e-55
AUQ42544.1|2599226_2600054_-	DUF2303 domain-containing protein	NA	A0A0P0ZBZ4	Stx2-converting_phage	60.0	2.0e-89
AUQ42545.1|2600112_2600487_-	hypothetical protein	NA	Q8HAA1	Salmonella_phage	73.9	6.8e-45
AUQ42546.1|2600771_2601005_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ42547.1|2601001_2601262_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ42548.1|2601457_2602090_-	LexA family transcriptional repressor	NA	K7PLZ5	Enterobacterial_phage	44.9	1.4e-42
AUQ42549.1|2602189_2602390_+	cell division protein	NA	NA	NA	NA	NA
AUQ42550.1|2602427_2602964_+	DNA-binding protein	NA	NA	NA	NA	NA
AUQ42551.1|2602960_2603143_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ42552.1|2603144_2603324_+	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
AUQ42553.1|2603320_2604340_+	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	73.1	9.6e-33
AUQ42554.1|2604336_2605056_+	phage N-6-adenine-methyltransferase	NA	K7PGU4	Enterobacteria_phage	70.3	4.3e-88
AUQ42555.1|2605046_2605424_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	65.3	6.7e-40
AUQ42556.1|2605517_2606216_+	phage regulatory protein/antirepressor Ant	NA	A0A1P8DTE1	Proteus_phage	54.6	8.8e-54
AUQ42557.1|2606305_2607127_+	DNA-binding protein	NA	Q8HA92	Salmonella_phage	61.7	2.1e-91
AUQ42558.1|2607123_2608125_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	47.9	1.1e-89
AUQ42559.1|2608182_2609001_+	antitermination protein	NA	A0A286N2Q2	Klebsiella_phage	43.9	2.0e-57
AUQ42560.1|2609368_2610457_+	site-specific DNA-methyltransferase	NA	A0A0N7KZF8	Stx2-converting_phage	63.4	1.6e-131
AUQ42561.1|2610735_2611614_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUQ42562.1|2611862_2612420_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ43733.1|2612633_2612978_+|holin	phage holin, lambda family	holin	Q8HA87	Salmonella_phage	61.0	5.9e-27
AUQ42563.1|2612981_2613605_+	endolysin	NA	Q8HA86	Salmonella_phage	64.7	6.6e-69
AUQ42564.1|2613601_2613946_+	DUF2570 domain-containing protein	NA	NA	NA	NA	NA
AUQ42565.1|2613920_2614148_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ42566.1|2614531_2615056_+	hypothetical protein	NA	G8C7W4	Escherichia_phage	54.6	2.4e-48
AUQ42567.1|2615177_2615528_+	HNH endonuclease	NA	A0A1W6JP27	Morganella_phage	68.1	1.9e-44
AUQ42568.1|2615663_2616119_+|terminase	phage terminase small subunit P27 family	terminase	A0A1J0GV10	Halomonas_phage	52.9	2.1e-24
AUQ42569.1|2616121_2617852_+|terminase	terminase large subunit	terminase	A0A1J0GUY5	Halomonas_phage	58.9	9.1e-209
AUQ42570.1|2617999_2619229_+|portal	phage portal protein	portal	A0A1W6JP33	Morganella_phage	82.2	4.8e-196
AUQ42571.1|2619221_2619821_+|head,protease	HK97 family phage prohead protease	head,protease	Q8SBH9	Shigella_phage	76.5	9.2e-84
AUQ43734.1|2619839_2621066_+|capsid	phage major capsid protein	capsid	Q8SBH8	Shigella_phage	66.3	1.5e-152
AUQ43735.1|2621149_2621467_+|head,tail	phage gp6-like head-tail connector protein	head,tail	S5FKK6	Shigella_phage	59.4	6.4e-28
AUQ42572.1|2621463_2621856_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
AUQ42573.1|2621855_2622374_+	hypothetical protein	NA	Q8HAC8	Salmonella_phage	56.8	2.2e-49
AUQ42574.1|2622370_2622943_+	hypothetical protein	NA	M1FQV7	Enterobacteria_phage	56.3	1.8e-57
AUQ42575.1|2622949_2623156_+	DUF2635 domain-containing protein	NA	Q8SBH3	Shigella_phage	71.4	3.9e-10
AUQ42576.1|2623152_2624652_+|tail	phage tail protein	tail	A0A192Y7L1	Salmonella_phage	68.5	3.3e-183
AUQ42577.1|2624652_2625009_+|tail	phage tail protein	tail	U5P076	Shigella_phage	85.6	9.1e-55
AUQ42578.1|2625005_2625278_+|tail	phage tail assembly protein	tail	Q8W621	Enterobacteria_phage	48.9	2.8e-16
AUQ42579.1|2625410_2627291_+|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	52.5	5.3e-170
AUQ42580.1|2627303_2627792_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ42581.1|2627851_2629156_+	DNA circularization protein	NA	S5FUX4	Shigella_phage	54.3	1.4e-129
AUQ42582.1|2629152_2630226_+|plate	baseplate protein	plate	U5P0H6	Shigella_phage	65.2	1.9e-132
AUQ42583.1|2630225_2630792_+|plate	phage baseplate assembly protein V	plate	A0A192Y8K5	Salmonella_phage	46.4	2.2e-31
AUQ42584.1|2630795_2631209_+	hypothetical protein	NA	Q8HAB8	Salmonella_phage	58.4	6.0e-42
AUQ42585.1|2631201_2632260_+|plate	phage baseplate protein	plate	U5P424	Shigella_phage	61.6	6.3e-128
AUQ42586.1|2632250_2632832_+	DUF2313 domain-containing protein	NA	O22003	Shigella_phage	65.8	9.2e-73
AUQ43736.1|2633039_2633816_+	hypothetical protein	NA	A0A0M3ULD8	Salmonella_phage	44.2	2.1e-40
AUQ42587.1|2633819_2634167_+|tail	phage tail protein	tail	A0A0M4S6V4	Salmonella_phage	36.8	3.1e-15
AUQ42588.1|2634204_2634426_-|tail	phage tail protein	tail	G4KKN7	Yersinia_phage	41.1	2.0e-07
AUQ42589.1|2634424_2634655_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ42590.1|2634861_2636655_-	DUF3413 domain-containing protein	NA	NA	NA	NA	NA
AUQ42591.1|2636682_2636910_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ42592.1|2637087_2638098_+	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	47.7	5.7e-86
>prophage 3
CP025800	Yersinia ruckeri strain SC09 chromosome, complete genome	3799871	2847980	2885725	3799871	tail,integrase,head,portal,capsid,plate	Erwinia_phage(47.06%)	47	2846355:2846371	2895821:2895837
2846355:2846371	attL	AATCAAATAAATCAGTA	NA	NA	NA	NA
AUQ42777.1|2847980_2848199_-|integrase	integrase	integrase	B6SD78	Bacteriophage	69.4	3.2e-26
AUQ42778.1|2848774_2849530_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUQ42779.1|2849964_2850189_-	DUF2594 domain-containing protein	NA	NA	NA	NA	NA
AUQ42780.1|2850922_2851579_+	two-component system response regulator UvrY	NA	NA	NA	NA	NA
AUQ42781.1|2851550_2853404_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
AUQ42782.1|2853462_2854011_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AUQ42783.1|2854706_2854922_-	transcriptional regulator	NA	Q37973	Salmonella_virus	62.5	9.7e-20
AUQ42784.1|2855013_2856180_-	hypothetical protein	NA	A0A218M4J7	Erwinia_phage	64.8	3.7e-137
AUQ42785.1|2856176_2856662_-|tail	phage tail protein	tail	F1BUT6	Erwinia_phage	62.9	2.3e-48
AUQ42786.1|2856673_2859127_-|tail	phage tail tape measure protein	tail	Q7Y4C8	Escherichia_virus	38.9	4.7e-134
AUQ42787.1|2859119_2859242_-|tail	GpE family phage tail protein	tail	Q858U8	Yersinia_virus	72.2	2.8e-08
AUQ42788.1|2859268_2859565_-|tail	phage tail assembly protein	tail	F1BUU0	Erwinia_phage	62.6	5.6e-26
AUQ42789.1|2859620_2860136_-|tail	phage major tail tube protein	tail	A0A218M4J0	Erwinia_phage	71.9	1.5e-63
AUQ42790.1|2860150_2861320_-|tail	phage tail protein	tail	F1BUU3	Erwinia_phage	79.9	2.0e-183
AUQ42791.1|2861447_2862116_-|tail	phage tail protein	tail	Q9MCR5	Enterobacteria_phage	51.6	4.8e-33
AUQ42792.1|2862115_2863498_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	45.6	4.3e-100
AUQ42793.1|2863487_2864105_-|tail	phage tail protein I	tail	F1BUP2	Erwinia_phage	72.3	3.6e-83
AUQ42794.1|2864097_2865006_-|plate	baseplate assembly protein	plate	A0A1J0I2M3	Salmonella_phage	75.2	4.1e-120
AUQ42795.1|2865010_2865361_-|plate	baseplate assembly protein	plate	F1BUP4	Erwinia_phage	65.5	8.4e-37
AUQ42796.1|2865357_2865996_-|plate	phage baseplate assembly protein V	plate	A0A0M4S6F6	Salmonella_phage	56.1	1.1e-58
AUQ42797.1|2866150_2866894_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
AUQ42798.1|2866894_2867437_+	ImmA/IrrE family metallo-endopeptidase	NA	Q854W5	Mycobacterium_virus	34.2	3.6e-10
AUQ43743.1|2867442_2868474_+	beta family protein	NA	NA	NA	NA	NA
AUQ42799.1|2868459_2869083_-	protein cII	NA	NA	NA	NA	NA
AUQ42800.1|2869169_2869634_-	phage virion morphogenesis protein	NA	O80313	Escherichia_phage	69.4	5.7e-49
AUQ42801.1|2869630_2870095_-|tail	phage tail protein	tail	F1BUP9	Erwinia_phage	67.8	2.6e-54
AUQ42802.1|2870190_2870607_-	LysB family transcriptional regulator	NA	F1BUQ1	Erwinia_phage	48.9	7.9e-26
AUQ42803.1|2870608_2871115_-	lysozyme	NA	A0A218M4K3	Erwinia_phage	64.3	1.1e-56
AUQ42804.1|2871098_2871308_-	hypothetical protein	NA	A0A218M4L5	Erwinia_phage	47.8	1.5e-09
AUQ42805.1|2871310_2871514_-|tail	phage tail protein	tail	Q858W3	Yersinia_virus	68.7	2.4e-20
AUQ43744.1|2871513_2871987_-|head	head completion/stabilization protein	head	F1BUQ6	Erwinia_phage	56.7	3.0e-45
AUQ42806.1|2872078_2872732_-	hypothetical protein	NA	F1BUQ7	Erwinia_phage	66.7	1.3e-70
AUQ42807.1|2872735_2873938_-|capsid	phage major capsid protein, P2 family	capsid	F1BUQ8	Erwinia_phage	76.1	2.4e-152
AUQ42808.1|2874000_2874855_-|capsid	phage capsid protein	capsid	Q01088	Escherichia_phage	58.9	5.1e-88
AUQ42809.1|2875009_2876773_+	oxidoreductase	NA	F1BUR2	Erwinia_phage	82.7	8.8e-292
AUQ42810.1|2876772_2877810_+|portal	phage portal protein	portal	F1BUR7	Erwinia_phage	75.4	3.1e-156
AUQ42811.1|2878215_2878410_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ42812.1|2878558_2878909_-	hypothetical protein	NA	Q858C6	Salmonella_phage	42.6	2.4e-15
AUQ42813.1|2878901_2881211_-	replication endonuclease	NA	A0A0F7LBQ2	Escherichia_phage	56.6	3.9e-239
AUQ42814.1|2881197_2881446_-	DUF2732 domain-containing protein	NA	NA	NA	NA	NA
AUQ42815.1|2881511_2881823_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ42816.1|2881834_2882020_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ42817.1|2882029_2882539_-	hypothetical protein	NA	E5G6L3	Salmonella_phage	53.0	7.1e-45
AUQ42818.1|2882593_2882791_-	DNA-binding protein	NA	Q1I116	Pasteurella_virus	39.3	2.8e-05
AUQ42819.1|2882861_2883473_+	Cro/Cl family transcriptional regulator	NA	Q6K1G0	Salmonella_virus	37.9	3.4e-25
AUQ42820.1|2883513_2884398_+	NAD-dependent DNA ligase	NA	NA	NA	NA	NA
AUQ42821.1|2884696_2885725_+|integrase	integrase	integrase	Q1I119	Pasteurella_virus	62.1	5.4e-116
2895821:2895837	attR	TACTGATTTATTTGATT	NA	NA	NA	NA
>prophage 4
CP025800	Yersinia ruckeri strain SC09 chromosome, complete genome	3799871	3045017	3056760	3799871	plate,tRNA	Tupanvirus(22.22%)	13	NA	NA
AUQ42962.1|3045017_3046946_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.2	1.0e-128
AUQ42963.1|3046949_3047501_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.7	2.6e-16
AUQ42964.1|3047599_3047797_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
AUQ42965.1|3047834_3048191_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
AUQ42966.1|3048671_3049655_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	39.0	1.2e-35
AUQ42967.1|3049669_3052057_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	27.8	5.1e-08
AUQ42968.1|3052061_3052358_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	4.2e-13
AUQ42969.1|3052571_3052868_-	TM2 domain-containing protein	NA	M4ZS56	Bacillus_phage	70.3	6.2e-17
AUQ42970.1|3053994_3054654_-|plate	phage baseplate assembly protein V	plate	A0A0F7LDY9	Escherichia_phage	47.2	2.5e-42
AUQ42971.1|3054767_3055355_-	cell filamentation protein Fic	NA	NA	NA	NA	NA
AUQ43755.1|3055351_3055540_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ42972.1|3055633_3056251_-	phage virion morphogenesis protein	NA	A0A0A7NV60	Enterobacteria_phage	42.5	3.0e-37
AUQ42973.1|3056472_3056760_+	tyrosine recombinase XerS	NA	A0A0F7LBR0	Escherichia_phage	62.0	2.6e-28
>prophage 5
CP025800	Yersinia ruckeri strain SC09 chromosome, complete genome	3799871	3665072	3674625	3799871	protease,tRNA	Brazilian_cedratvirus(16.67%)	8	NA	NA
AUQ43467.1|3665072_3666797_+	thiol reductant ABC exporter subunit CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	29.5	2.0e-14
AUQ43468.1|3666896_3667607_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
AUQ43469.1|3667770_3667989_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AUQ43470.1|3668243_3670520_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	4.3e-166
AUQ43471.1|3670547_3670868_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	42.7	1.8e-14
AUQ43472.1|3671227_3671449_+	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	59.7	4.6e-17
AUQ43473.1|3671560_3673510_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	39.3	7.2e-37
AUQ43474.1|3673509_3674625_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	1.9e-10
