The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	0	18063	4576448		Prochlorococcus_phage(100.0%)	7	NA	NA
AUU29644.1|1035_1860_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUU29645.1|4329_6066_-	bifunctional isocitrate dehydrogenase kinase/phosphatase	NA	NA	NA	NA	NA
AUU29646.1|6151_7456_-	isocitrate lyase	NA	NA	NA	NA	NA
AUU29647.1|7485_9087_-	malate synthase A	NA	NA	NA	NA	NA
AUU29648.1|9355_10285_-	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
AUU29649.1|10441_10732_+	acetyltransferase	NA	NA	NA	NA	NA
AUU29650.1|16473_18063_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.7	1.3e-68
>prophage 2
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	23431	25195	4576448		Bacillus_phage(50.0%)	3	NA	NA
AUU29656.1|23431_23704_-	DNA-binding protein HU-alpha	NA	A7KV42	Bacillus_phage	58.9	3.2e-20
AUU29657.1|23890_24481_-	DUF416 domain-containing protein	NA	NA	NA	NA	NA
AUU29658.1|24523_25195_-	endonuclease V	NA	A0A1V0SJW5	Klosneuvirus	29.2	2.8e-20
>prophage 3
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	33639	41968	4576448		Vibrio_phage(50.0%)	2	NA	NA
AUU29668.1|33639_37863_-	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	26.5	2.5e-66
AUU29669.1|37939_41968_-	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	29.0	9.4e-23
>prophage 4
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	46084	49137	4576448		Tupanvirus(50.0%)	4	NA	NA
AUU29676.1|46084_47269_-	translation elongation factor EF-Tu 2	NA	A0A2K9L516	Tupanvirus	26.1	4.4e-13
AUU29677.1|47844_48000_+	hypothetical protein	NA	NA	NA	NA	NA
AUU29678.1|48009_48204_-	hypothetical protein	NA	NA	NA	NA	NA
AUU29679.1|48186_49137_+	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	32.0	1.1e-27
>prophage 5
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	57476	59321	4576448		Acinetobacter_phage(100.0%)	1	NA	NA
AUU29683.1|57476_59321_-	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	32.6	1.6e-09
>prophage 6
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	66839	68054	4576448		Oenococcus_phage(100.0%)	1	NA	NA
AUU29688.1|66839_68054_-	D-galactonate dehydratase family protein	NA	Q6A202	Oenococcus_phage	28.5	2.0e-45
>prophage 7
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	81611	88858	4576448		Serratia_phage(33.33%)	5	NA	NA
AUU29699.1|81611_83909_-	formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme	NA	A0A1S6UAD4	Serratia_phage	48.1	6.0e-06
AUU29700.1|83959_84280_-	fructose-like phosphotransferase enzyme IIB component 2	NA	NA	NA	NA	NA
AUU29701.1|84294_85374_-	PTS fructose-like transporter subunit EIIC	NA	NA	NA	NA	NA
AUU29702.1|85682_88184_+	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	26.9	1.0e-11
AUU29703.1|88195_88858_+	fructose-6-phosphate aldolase	NA	A0A0E3F0E2	Synechococcus_phage	34.1	3.5e-28
>prophage 8
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	106146	107478	4576448		Erwinia_phage(100.0%)	1	NA	NA
AUU29717.1|106146_107478_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.9	1.7e-45
>prophage 9
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	122316	127177	4576448		Feldmannia_irregularis_virus(33.33%)	6	NA	NA
AUU29732.1|122316_123015_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
AUU29733.1|123011_124385_+	two-component system sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.9	3.8e-16
AUU29734.1|124490_125165_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AUU29735.1|125313_126297_-	2-keto-3-deoxygluconate transporter	NA	NA	NA	NA	NA
AUU29736.1|126274_126382_-	2-keto-3-deoxygluconate permease	NA	NA	NA	NA	NA
AUU29737.1|126556_127177_-	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	59.8	4.9e-64
>prophage 10
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	150077	152857	4576448		Escherichia_phage(50.0%)	3	NA	NA
AUU29754.1|150077_150863_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.5	1.8e-23
AUU29755.1|150896_151793_-	ribokinase	NA	NA	NA	NA	NA
AUU29756.1|151960_152857_+	sulfolactaldehyde 3-reductase	NA	D2K0C8	Staphylococcus_phage	90.7	1.3e-60
>prophage 11
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	168803	171274	4576448		Ectocarpus_siliculosus_virus(50.0%)	2	NA	NA
AUU29767.1|168803_169853_+	two-component system sensor histidine kinase NtrB	NA	Q8QKV7	Ectocarpus_siliculosus_virus	26.1	2.5e-07
AUU33476.1|169864_171274_+	nitrogen regulation protein NR(I)	NA	Q56AR1	Bacillus_thuringiensis_phage	28.7	2.4e-05
>prophage 12
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	175391	178178	4576448		uncultured_virus(100.0%)	1	NA	NA
AUU29772.1|175391_178178_-	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	32.2	3.4e-72
>prophage 13
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	191861	192476	4576448		Streptococcus_phage(100.0%)	1	NA	NA
AUU29783.1|191861_192476_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	33.0	1.6e-19
>prophage 14
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	201167	204454	4576448		uncultured_Mediterranean_phage(50.0%)	4	NA	NA
AUU29791.1|201167_201944_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	32.6	5.1e-26
AUU29792.1|201946_202462_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
AUU29793.1|202465_202735_-	twin-arginine translocase subunit TatA	NA	NA	NA	NA	NA
AUU29794.1|202813_204454_-	ubiquinone biosynthesis protein UbiB	NA	M4R0M8	Ostreococcus_lucimarinus_virus	29.0	8.2e-42
>prophage 15
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	217760	219590	4576448		Catovirus(100.0%)	1	NA	NA
AUU33478.1|217760_219590_-	DNA helicase RecQ	NA	A0A1V0SBK0	Catovirus	37.8	7.4e-84
>prophage 16
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	226744	230603	4576448		Bacillus_phage(100.0%)	3	NA	NA
AUU29813.1|226744_228907_-	DNA helicase II	NA	A7KV33	Bacillus_phage	37.0	9.3e-118
AUU29814.1|228990_229707_-	flavin mononucleotide phosphatase YigB	NA	NA	NA	NA	NA
AUU29815.1|229706_230603_-	tyrosine recombinase XerC	NA	A0A142F1N9	Bacillus_phage	29.6	1.1e-24
>prophage 17
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	233729	235345	4576448		Salmonella_phage(100.0%)	2	NA	NA
AUU29819.1|233729_234035_+	hypothetical protein	NA	A0A0U2C3T4	Salmonella_phage	54.4	1.8e-27
AUU29820.1|234031_235345_+	DKNYY family protein	NA	A0A0U2C3T4	Salmonella_phage	33.6	6.2e-08
>prophage 18
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	244377	245650	4576448	transposase	Shigella_phage(100.0%)	1	NA	NA
AUU29828.1|244377_245650_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	98.7	2.0e-176
>prophage 19
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	253738	259882	4576448		Enterobacteria_phage(40.0%)	6	NA	NA
AUU29835.1|253738_254869_-	dTDP-4-amino-4,6-dideoxy-D-glucose transaminase	NA	A0A0F7LAY0	uncultured_marine_virus	41.7	2.0e-18
AUU29836.1|254873_255548_-	dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase	NA	NA	NA	NA	NA
AUU29837.1|255525_256407_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	65.6	4.8e-105
AUU29838.1|256425_257493_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.4	5.1e-101
AUU29839.1|257492_258755_-	UDP-N-acetyl-D-mannosamine dehydrogenase	NA	M1HNJ7	Paramecium_bursaria_Chlorella_virus	27.0	1.0e-23
AUU29840.1|258751_259882_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	32.8	3.9e-27
>prophage 20
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	263924	269336	4576448		Indivirus(33.33%)	5	NA	NA
AUU29846.1|263924_264254_-	thiol reductase thioredoxin	NA	A0A1V0SD63	Indivirus	38.5	4.2e-14
AUU29847.1|264384_265650_+	ATP-dependent RNA helicase RhlB	NA	E3T5E1	Cafeteria_roenbergensis_virus	31.2	3.1e-41
AUU29848.1|265655_265778_+	addiction module toxin RelE	NA	NA	NA	NA	NA
AUU29849.1|265783_267268_+	guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase	NA	NA	NA	NA	NA
AUU29850.1|267314_269336_-	DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.6	3.8e-113
>prophage 21
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	276932	278609	4576448		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
AUU29858.1|276932_278609_-	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.0	5.4e-65
>prophage 22
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	297402	299271	4576448		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
AUU29869.1|297402_299271_-	low affinity potassium transport system protein kup	NA	M1I6H8	Paramecium_bursaria_Chlorella_virus	30.6	6.0e-65
>prophage 23
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	303876	304869	4576448		Heterosigma_akashiwo_virus(100.0%)	1	NA	NA
AUU29872.1|303876_304869_-	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	38.0	4.5e-51
>prophage 24
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	316822	320184	4576448		Chrysochromulina_ericina_virus(50.0%)	2	NA	NA
AUU29886.1|316822_318193_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A0N7G7I9	Chrysochromulina_ericina_virus	36.7	3.1e-34
AUU29887.1|318354_320184_+	glutamine--fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	43.2	5.6e-132
>prophage 25
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	327794	331636	4576448		Cyanophage(50.0%)	4	NA	NA
AUU29891.1|327794_328835_+	phosphate-binding protein	NA	A0A1D7SRJ6	Cyanophage	38.3	2.7e-51
AUU29892.1|328921_329881_+	phosphate ABC transporter permease	NA	NA	NA	NA	NA
AUU29893.1|329880_330771_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AUU29894.1|330862_331636_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.6	1.3e-18
>prophage 26
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	342616	346957	4576448		Stx2-converting_phage(66.67%)	6	NA	NA
AUU29905.1|342616_343954_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	35.7	4.5e-62
AUU29906.1|344007_344574_-	chromate reductase	NA	NA	NA	NA	NA
AUU29907.1|344595_345345_-	hypothetical protein	NA	NA	NA	NA	NA
AUU33481.1|345501_345810_-	transcriptional regulator	NA	NA	NA	NA	NA
AUU29908.1|345938_346613_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
AUU29909.1|346609_346957_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	4.1e-44
>prophage 27
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	357123	364492	4576448		Staphylococcus_phage(33.33%)	8	NA	NA
AUU29915.1|357123_357381_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	56.7	5.4e-17
AUU29916.1|357344_357704_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AUU29917.1|357720_357861_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AUU29918.1|357973_358174_+	hypothetical protein	NA	NA	NA	NA	NA
AUU29919.1|358467_359871_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AUU29920.1|359875_360976_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	35.0	6.9e-53
AUU29921.1|360975_362049_+	DNA replication and repair protein RecF	NA	NA	NA	NA	NA
AUU29922.1|362077_364492_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	34.6	3.7e-115
>prophage 28
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	374602	375556	4576448		Cyanophage(50.0%)	2	NA	NA
AUU29929.1|374602_375016_+	heat-shock protein IbpA	NA	A0A1D7SU06	Cyanophage	36.2	1.0e-17
AUU29930.1|375127_375556_+	heat-shock protein IbpB	NA	A0A1D8KPX5	Synechococcus_phage	36.4	2.1e-13
>prophage 29
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	383633	390880	4576448		Tupanvirus(33.33%)	12	NA	NA
AUU29935.1|383633_385100_+	DUF4976 domain-containing protein	NA	A0A2K9L1A5	Tupanvirus	26.1	5.1e-27
AUU29936.1|385146_385560_-	hypothetical protein	NA	NA	NA	NA	NA
AUU29937.1|385668_386016_+	hypothetical protein	NA	NA	NA	NA	NA
AUU29938.1|386005_386368_+	hypothetical protein	NA	NA	NA	NA	NA
AUU29939.1|386364_386862_+	radical SAM protein	NA	NA	NA	NA	NA
AUU29940.1|386869_388054_-	multidrug transporter EmrD	NA	S4TR35	Salmonella_phage	23.5	5.2e-14
AUU29941.1|388333_388423_-	type I toxin-antitoxin system toxin TisB	NA	NA	NA	NA	NA
AUU29942.1|388419_388533_-	LexA family transcriptional regulator	NA	NA	NA	NA	NA
AUU29943.1|388555_388714_-	hypothetical protein	NA	NA	NA	NA	NA
AUU29944.1|388710_389001_-	hypothetical protein	NA	NA	NA	NA	NA
AUU29945.1|388987_389086_+	ilvB operon leader peptide IvbL	NA	NA	NA	NA	NA
AUU29946.1|389191_390880_+	acetolactate synthase, large subunit, biosynthetic type	NA	G9E4W7	Ostreococcus_lucimarinus_virus	28.4	1.7e-18
>prophage 30
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	398185	399520	4576448		Moraxella_phage(100.0%)	1	NA	NA
AUU33484.1|398185_399520_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.7	2.5e-65
>prophage 31
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	404782	412907	4576448	transposase	Shigella_phage(66.67%)	4	NA	NA
AUU29959.1|404782_405951_-|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
AUU29960.1|406781_408054_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AUU29961.1|408904_409090_-	hypothetical protein	NA	NA	NA	NA	NA
AUU29962.1|409019_412907_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	Q9LA58	Enterobacterial_phage	38.8	3.7e-226
>prophage 32
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	436292	437684	4576448		environmental_Halophage(100.0%)	1	NA	NA
AUU29976.1|436292_437684_-	xanthine permease XanP	NA	H9YQ34	environmental_Halophage	100.0	1.4e-71
>prophage 33
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	441985	448735	4576448		Bordetella_phage(25.0%)	6	NA	NA
AUU29980.1|441985_444094_-	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA	A0A291L9W9	Bordetella_phage	34.5	4.8e-10
AUU29981.1|444112_444388_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AUU29982.1|444442_445066_-	guanylate kinase	NA	K4JYM5	Abalone_herpesvirus	34.5	4.1e-18
AUU29983.1|445323_447006_+	NAD-dependent DNA ligase LigB	NA	A0A1Q2U2Q6	Vibrio_phage	23.4	4.3e-22
AUU29984.1|447002_447620_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
AUU29985.1|447910_448735_-	DNA damage-inducible protein D	NA	A0A1W6JPJ7	Morganella_phage	78.0	4.2e-95
>prophage 34
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	452108	456671	4576448		Xanthomonas_phage(25.0%)	6	NA	NA
AUU29991.1|452108_452564_-	dUTP diphosphatase	NA	Q2NP83	Xanthomonas_phage	58.8	2.1e-48
AUU29992.1|452544_453765_-	bifunctional phosphopantothenoylcysteine decarboxylase CoaC/phosphopantothenate--cysteine ligase CoaB	NA	Q9HH70	Methanothermobacter_phage	33.9	6.5e-44
AUU29993.1|454821_455058_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AUU29994.1|455078_455246_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AUU29995.1|455343_456153_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	F8WPX6	Bacillus_phage	32.2	1.5e-25
AUU29996.1|456191_456671_-	phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.0	4.8e-27
>prophage 35
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	469377	480107	4576448		Synechococcus_phage(16.67%)	10	NA	NA
AUU30008.1|469377_470310_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SL51	Synechococcus_phage	39.3	8.5e-36
AUU30009.1|470614_471472_+	protein YibB	NA	NA	NA	NA	NA
AUU30010.1|471746_472943_+	2-amino-3-ketobutyrate CoA ligase	NA	V5LQ39	Emiliania_huxleyi_virus	29.4	4.9e-36
AUU30011.1|472952_473978_+	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	84.6	2.1e-19
AUU30012.1|474216_475251_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	28.7	5.8e-09
AUU30013.1|475237_476197_-	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
AUU30014.1|476200_477484_-	murein hydrolase activator EnvC	NA	G9BW84	Planktothrix_phage	34.3	1.0e-07
AUU30015.1|477493_479038_-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA	NA
AUU30016.1|479282_479714_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AUU30017.1|479855_480107_+	glutaredoxin	NA	V9QKN6	Rhizobium_phage	54.8	2.0e-16
>prophage 36
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	502752	504597	4576448	tRNA	Tupanvirus(100.0%)	1	NA	NA
AUU30035.1|502752_504597_+|tRNA	selenocysteinyl-tRNA-specific translation elongation factor SelB	tRNA	A0A2K9KZ60	Tupanvirus	27.2	1.9e-15
>prophage 37
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	514462	520345	4576448		Staphylococcus_phage(33.33%)	6	NA	NA
AUU30044.1|514462_517198_+	ABC transporter ATP-binding protein/permease	NA	A0A2H4PQG7	Staphylococcus_phage	30.6	4.1e-22
AUU30045.1|517197_518322_+	inner membrane transport permease YhhJ	NA	NA	NA	NA	NA
AUU30046.1|518380_518656_+	type II toxin-antitoxin system HicA family toxin	NA	R4JMD3	Burkholderia_phage	50.0	3.7e-16
AUU30047.1|518652_519012_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
AUU30048.1|519131_519533_-	nickel-responsive transcriptional regulator NikR	NA	NA	NA	NA	NA
AUU30049.1|519538_520345_-	nickel import ATP-binding protein NikE	NA	G3M9Y6	Bacillus_virus	28.7	6.5e-16
>prophage 38
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	528238	532370	4576448		Dickeya_phage(50.0%)	4	NA	NA
AUU30057.1|528238_528904_-	VUT family protein	NA	A0A2I7SAW6	Vibrio_phage	53.6	5.6e-58
AUU30058.1|529124_529370_+	sulfurtransferase TusA	NA	A0A140XB86	Dickeya_phage	83.3	8.0e-10
AUU30059.1|529471_531670_-	zinc/cadmium/mercury/lead-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	38.1	1.1e-118
AUU30060.1|531743_532370_-	lysoplasmalogenase	NA	A0A140XAH6	Dickeya_phage	61.9	1.2e-30
>prophage 39
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	535373	538192	4576448		Planktothrix_phage(50.0%)	3	NA	NA
AUU30065.1|535373_536042_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	36.0	6.1e-28
AUU30066.1|536034_537093_+	ABC transporter permease	NA	NA	NA	NA	NA
AUU30067.1|537337_538192_+	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	41.9	1.6e-44
>prophage 40
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	543925	545408	4576448		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
AUU30074.1|543925_544693_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.6	4.9e-13
AUU30075.1|544694_545408_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	9.1e-14
>prophage 41
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	549027	550680	4576448		Planktothrix_phage(50.0%)	2	NA	NA
AUU30079.1|549027_549915_+	sugar ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	3.8e-17
AUU30080.1|549936_550680_+	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	25.0	3.7e-10
>prophage 42
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	568050	570498	4576448		Dickeya_phage(100.0%)	1	NA	NA
AUU30095.1|568050_570498_+	glycogen phosphorylase	NA	A0A140XAG6	Dickeya_phage	81.0	2.1e-33
>prophage 43
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	605109	606382	4576448	transposase	Shigella_phage(100.0%)	1	NA	NA
AUU30114.1|605109_606382_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
>prophage 44
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	611013	612169	4576448	transposase	Acinetobacter_phage(100.0%)	1	NA	NA
AUU30117.1|611013_612169_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.2e-66
>prophage 45
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	623596	625639	4576448		Indivirus(100.0%)	1	NA	NA
AUU30124.1|623596_625639_-	oligopeptidase A	NA	A0A1V0SD92	Indivirus	23.1	3.1e-46
>prophage 46
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	628988	633863	4576448	transposase	uncultured_Caudovirales_phage(75.0%)	5	NA	NA
AUU30129.1|628988_629342_+	transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	50.9	5.7e-25
AUU30130.1|629395_630685_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4J144	uncultured_Caudovirales_phage	73.5	4.6e-173
AUU30131.1|630697_631123_+	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	70.7	1.5e-51
AUU30132.1|631256_631553_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUU30133.1|632590_633863_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
>prophage 47
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	643469	643682	4576448		Morganella_phage(100.0%)	1	NA	NA
AUU30144.1|643469_643682_-	RNA chaperone/antiterminator CspA	NA	A0A1W6JNX5	Morganella_phage	71.4	2.3e-21
>prophage 48
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	647336	649670	4576448		Escherichia_phage(100.0%)	1	NA	NA
AUU30149.1|647336_649670_+	molybdopterin guanine dinucleotide-containing S/N-oxide reductase	NA	A0A077SK27	Escherichia_phage	29.5	4.1e-71
>prophage 49
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	659715	661700	4576448		Planktothrix_phage(100.0%)	2	NA	NA
AUU30158.1|659715_660699_+	dipeptide transport ATP-binding protein DppD	NA	G9BWD6	Planktothrix_phage	28.8	3.9e-15
AUU30159.1|660695_661700_+	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	7.0e-20
>prophage 50
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	678901	680443	4576448		Staphylococcus_phage(100.0%)	1	NA	NA
AUU30175.1|678901_680443_-	D-xylose ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.3	1.1e-16
>prophage 51
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	685760	686756	4576448		Escherichia_coli_O157_typing_phage(100.0%)	1	NA	NA
AUU30180.1|685760_686756_-	O-acetyltransferase	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	26.7	9.1e-12
>prophage 52
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	715477	717871	4576448		Iris_mild_mosaic_virus(100.0%)	1	NA	NA
AUU30199.1|715477_717871_+	maltodextrin phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	42.5	4.3e-15
>prophage 53
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	724519	725398	4576448	transposase	Sodalis_phage(100.0%)	1	NA	NA
AUU30207.1|724519_725398_-|transposase	ISNCY family transposase	transposase	Q2A0A7	Sodalis_phage	52.8	1.9e-69
>prophage 54
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	731961	735728	4576448		Bacillus_phage(66.67%)	3	NA	NA
AUU30216.1|731961_732681_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	34.7	3.5e-29
AUU30217.1|732677_734030_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	23.8	3.6e-11
AUU30218.1|734105_735728_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	52.5	5.3e-142
>prophage 55
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	752703	753540	4576448		Vibrio_phage(100.0%)	1	NA	NA
AUU30234.1|752703_753540_+	adenine-specific DNA-methyltransferase	NA	A0A1S6L1V5	Vibrio_phage	49.1	2.2e-67
>prophage 56
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	777775	787316	4576448		Acinetobacter_phage(25.0%)	10	NA	NA
AUU30257.1|777775_778339_+	aminodeoxychorismate synthase component 2	NA	A0A0P0IKJ1	Acinetobacter_phage	55.7	7.1e-62
AUU30258.1|778424_779645_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AUU30259.1|779711_781814_-	hypothetical protein	NA	H9YQA8	environmental_Halophage	100.0	1.7e-76
AUU30260.1|781852_782485_-	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA	NA
AUU30261.1|782491_782707_-	hypothetical protein	NA	NA	NA	NA	NA
AUU30262.1|782786_783191_+	OsmC family protein	NA	NA	NA	NA	NA
AUU30263.1|783245_784115_-	phosphoribulokinase	NA	NA	NA	NA	NA
AUU30264.1|784168_784387_-	hypothetical protein	NA	A0A2H4J8A7	uncultured_Caudovirales_phage	40.3	3.1e-05
AUU30265.1|784380_785403_-	hydrolase	NA	NA	NA	NA	NA
AUU30266.1|785402_787316_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	33.0	5.2e-72
>prophage 57
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	792857	798431	4576448		uncultured_Caudovirales_phage(33.33%)	7	NA	NA
AUU30275.1|792857_793244_+	sulfurtransferase TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	38.3	7.4e-18
AUU30276.1|793243_793603_+	sulfurtransferase TusC	NA	NA	NA	NA	NA
AUU30277.1|793610_793898_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA	NA
AUU30278.1|794023_794398_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
AUU30279.1|794494_794965_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
AUU30280.1|795061_797176_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	27.5	5.2e-57
AUU30281.1|797246_798431_+	elongation factor Tu	NA	A0A2K9L516	Tupanvirus	26.1	4.4e-13
>prophage 58
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	814024	815043	4576448		Stx2-converting_phage(100.0%)	2	NA	NA
AUU30314.1|814024_814699_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
AUU30315.1|814695_815043_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	4.1e-44
>prophage 59
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	819872	821344	4576448	tRNA	Prochlorococcus_phage(50.0%)	2	NA	NA
AUU30319.1|819872_820820_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-06
AUU30320.1|820834_821344_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	41.1	1.1e-18
>prophage 60
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	831698	837936	4576448		Planktothrix_phage(33.33%)	6	NA	NA
AUU30328.1|831698_832457_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	9.7e-30
AUU30329.1|832464_833568_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUU30330.1|834815_835841_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	39.5	1.2e-70
AUU33500.1|835869_835998_-	hypothetical protein	NA	NA	NA	NA	NA
AUU30331.1|836767_836968_-	DUF2556 domain-containing protein	NA	NA	NA	NA	NA
AUU30332.1|837051_837936_-	adenine-specific DNA-methyltransferase	NA	M4QNN5	Ostreococcus_lucimarinus_virus	30.5	1.1e-24
>prophage 61
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	848501	849545	4576448		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
AUU30344.1|848501_849545_+	rod shape-determining protein	NA	F2Y0P3	Organic_Lake_phycodnavirus	22.3	6.7e-05
>prophage 62
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	866041	868566	4576448	protease	uncultured_archaeal_virus(50.0%)	2	NA	NA
AUU30358.1|866041_867109_-|protease	serine endoprotease DegS	protease	A0A1S5Y2X3	uncultured_archaeal_virus	24.2	6.8e-05
AUU30359.1|867198_868566_-|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	25.6	1.7e-21
>prophage 63
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	872532	873030	4576448		Pseudomonas_phage(100.0%)	1	NA	NA
AUU30365.1|872532_873030_+	stringent starvation protein B	NA	A0A1S5R3H3	Pseudomonas_phage	42.9	3.3e-26
>prophage 64
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	877492	878983	4576448		Burkholderia_virus(100.0%)	1	NA	NA
AUU30369.1|877492_878983_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	23.6	4.9e-09
>prophage 65
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	889910	904692	4576448		Staphylococcus_phage(25.0%)	17	NA	NA
AUU33504.1|889910_890840_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	35.0	8.8e-17
AUU30377.1|890935_893272_+	aerobic respiration two-component sensor histidine kinase ArcB	NA	A0A1V0SGX0	Hokovirus	31.2	3.8e-40
AUU30378.1|893501_894155_+	isoprenoid biosynthesis protein ElbB	NA	NA	NA	NA	NA
AUU30379.1|894151_894880_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
AUU30380.1|894876_895509_-	protein YrbL	NA	NA	NA	NA	NA
AUU30381.1|895721_895994_-	phosphocarrier protein NPr	NA	NA	NA	NA	NA
AUU30382.1|895990_896845_-	RNase adaptor protein RapZ	NA	A0A0R8VB27	Thermobifida_phage	28.4	1.1e-05
AUU30383.1|896890_897382_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
AUU30384.1|897499_897787_-	ribosome hibernation promoting factor	NA	A0A0M7QCF2	Escherichia_phage	44.3	2.5e-10
AUU30385.1|897809_899243_-	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AUU30386.1|899290_900016_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.4	3.2e-22
AUU30387.1|900022_900580_-	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA	NA
AUU30388.1|900548_901124_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AUU30389.1|901120_901687_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	NA	A0A140XBD6	Dickeya_phage	75.0	6.1e-53
AUU30390.1|901707_902694_-	arabinose 5-phosphate isomerase KdsD	NA	A0A2P0VNK5	Tetraselmis_virus	31.5	1.5e-38
AUU30391.1|902707_903673_-	calcium/sodium antiporter	NA	NA	NA	NA	NA
AUU30392.1|903882_904692_+	phospholipid ABC transporter ATP-binding protein MlaF	NA	G3M9Y6	Bacillus_virus	29.3	2.2e-19
>prophage 66
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	908760	910238	4576448		Vibrio_phage(50.0%)	2	NA	NA
AUU30397.1|908760_909039_-	sugar fermentation stimulation protein B	NA	A0A2I7S995	Vibrio_phage	68.7	1.5e-17
AUU30398.1|909266_910238_-	octaprenyl-diphosphate synthase	NA	A0A1V0SE37	Indivirus	25.8	6.0e-08
>prophage 67
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	917012	919885	4576448	protease	Micromonas_pusilla_virus(50.0%)	2	NA	NA
AUU30407.1|917012_918947_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	G8DDJ2	Micromonas_pusilla_virus	43.6	6.3e-118
AUU30408.1|919036_919885_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	29.9	3.4e-23
>prophage 68
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	923968	930583	4576448		Dickeya_phage(50.0%)	4	NA	NA
AUU30411.1|923968_925312_-	argininosuccinate synthase	NA	A0A140XAJ5	Dickeya_phage	92.9	1.1e-63
AUU30412.1|925942_926395_+	ribosome maturation factor	NA	NA	NA	NA	NA
AUU30413.1|926422_927910_+	transcription termination protein NusA	NA	NA	NA	NA	NA
AUU30414.1|927934_930583_+	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	26.3	2.5e-24
>prophage 69
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	936064	937954	4576448		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
AUU30421.1|936064_937954_+	DEAD/DEAH family ATP-dependent RNA helicase	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	30.8	2.0e-52
>prophage 70
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	943656	951450	4576448		Diadromus_pulchellus_ascovirus(25.0%)	10	NA	NA
AUU30428.1|943656_943959_-	GIY-YIG nuclease family protein	NA	F2NZ06	Diadromus_pulchellus_ascovirus	52.5	3.9e-14
AUU30429.1|944009_944453_+	hypothetical protein	NA	NA	NA	NA	NA
AUU30430.1|944432_944951_-	type 1 glutamine amidotransferase	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	26.4	1.7e-09
AUU30431.1|945078_945714_+	hypothetical protein	NA	NA	NA	NA	NA
AUU30432.1|945786_946827_+	permease	NA	NA	NA	NA	NA
AUU30433.1|946940_947516_-	osmotically-inducible protein OsmY	NA	NA	NA	NA	NA
AUU30434.1|947525_948116_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	31.1	5.4e-12
AUU30435.1|948135_948531_-	YraN family protein	NA	NA	NA	NA	NA
AUU30436.1|948488_950525_-	penicillin-binding protein activator	NA	NA	NA	NA	NA
AUU30437.1|950589_951450_+	rRNA (cytidine-2'-O-)-methyltransferase	NA	M1PLC5	Streptococcus_phage	43.3	3.6e-49
>prophage 71
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	962463	963615	4576448		Streptococcus_phage(100.0%)	1	NA	NA
AUU30448.1|962463_963615_+	glycerate 2-kinase	NA	W6LM47	Streptococcus_phage	41.0	2.8e-49
>prophage 72
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	990932	992205	4576448	transposase	Shigella_phage(100.0%)	1	NA	NA
AUU30472.1|990932_992205_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
>prophage 73
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1001728	1002694	4576448		Escherichia_phage(100.0%)	1	NA	NA
AUU30479.1|1001728_1002694_-	TerC family protein	NA	A0A291LBC5	Escherichia_phage	33.8	5.2e-36
>prophage 74
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1015350	1023462	4576448		Herpes_simplex_virus(33.33%)	6	NA	NA
AUU30490.1|1015350_1018437_-	beta-galactosidase subunit alpha	NA	L0N6M2	Herpes_simplex_virus	33.9	1.4e-154
AUU30491.1|1018618_1019602_-	transcriptional regulator EbgR	NA	NA	NA	NA	NA
AUU30492.1|1019531_1019714_-	hypothetical protein	NA	NA	NA	NA	NA
AUU33511.1|1020193_1021525_-	putrescine aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	27.7	3.5e-27
AUU33512.1|1021460_1021667_-	hypothetical protein	NA	NA	NA	NA	NA
AUU30493.1|1021941_1023462_+	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	51.5	9.0e-35
>prophage 75
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1027539	1032898	4576448	tRNA	Vibrio_phage(33.33%)	6	NA	NA
AUU30497.1|1027539_1029381_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.3e-35
AUU30498.1|1029439_1029562_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AUU30499.1|1029575_1031321_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.2	5.4e-76
AUU30500.1|1031431_1031647_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AUU30501.1|1031645_1031876_+	hypothetical protein	NA	NA	NA	NA	NA
AUU30502.1|1031884_1032898_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.2	3.7e-109
>prophage 76
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1039212	1040451	4576448	tRNA	Sinorhizobium_phage(100.0%)	1	NA	NA
AUU30508.1|1039212_1040451_-|tRNA	multifunctional tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/2'phosphatase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	51.9	2.6e-93
>prophage 77
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1045588	1047022	4576448		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AUU30512.1|1045588_1047022_+	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	29.4	2.3e-40
>prophage 78
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1053939	1067050	4576448	transposase	Shigella_phage(16.67%)	15	NA	NA
AUU30519.1|1053939_1055213_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	98.7	2.0e-176
AUU30520.1|1055423_1055774_-	hypothetical protein	NA	NA	NA	NA	NA
AUU30521.1|1056088_1056742_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	44.3	4.9e-46
AUU30522.1|1057002_1057173_+	DUF4051 domain-containing protein	NA	NA	NA	NA	NA
AUU30523.1|1057230_1058004_-	zinc transporter ZupT	NA	NA	NA	NA	NA
AUU30524.1|1058146_1058935_+	4,5-DOPA dioxygenase extradiol	NA	NA	NA	NA	NA
AUU30525.1|1058972_1060133_-	hypothetical protein	NA	B2ZXR7	Ralstonia_phage	42.9	1.0e-86
AUU30526.1|1060138_1060810_-	DUF1190 domain-containing protein	NA	A0A173GEW8	Erwinia_phage	44.3	4.8e-33
AUU30527.1|1060697_1060958_-	hypothetical protein	NA	NA	NA	NA	NA
AUU30528.1|1060957_1062439_-	outer membrane protein TolC	NA	NA	NA	NA	NA
AUU30529.1|1062643_1063273_+	ADP-ribose diphosphatase	NA	A0A1S6L1P8	Vibrio_phage	32.5	9.2e-18
AUU30530.1|1063273_1063696_+	dehydrogenase	NA	NA	NA	NA	NA
AUU30531.1|1063720_1064548_+	3',5'-cyclic-AMP phosphodiesterase	NA	NA	NA	NA	NA
AUU30532.1|1064547_1065129_+	esterase YqiA	NA	NA	NA	NA	NA
AUU30533.1|1065157_1067050_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	35.1	3.4e-92
>prophage 79
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1070877	1081701	4576448		Stx_converting_phage(25.0%)	10	NA	NA
AUU30539.1|1070877_1071270_+	TIGR00156 family protein	NA	A0A1I9LJU6	Stx_converting_phage	48.1	3.6e-20
AUU30540.1|1071322_1071805_+	transcriptional regulator	NA	NA	NA	NA	NA
AUU30541.1|1071804_1072023_+	hypothetical protein	NA	NA	NA	NA	NA
AUU30542.1|1072350_1074609_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	35.1	1.1e-84
AUU30543.1|1074842_1075580_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUU30544.1|1075654_1077067_+	cell division protein FtsP	NA	NA	NA	NA	NA
AUU30545.1|1077177_1079397_+	YgiQ family radical SAM protein	NA	M1QSD9	Pseudomonas_phage	70.0	3.9e-103
AUU30546.1|1079439_1079697_-	hypothetical protein	NA	NA	NA	NA	NA
AUU30547.1|1079747_1080674_-	DUF3828 domain-containing protein	NA	NA	NA	NA	NA
AUU30548.1|1080873_1081701_-	2,5-didehydrogluconate reductase DkgA	NA	A0A2H4PQR8	Staphylococcus_phage	44.9	1.6e-62
>prophage 80
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1088554	1089439	4576448		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
AUU30556.1|1088554_1089439_-	SDR family NAD(P)-dependent oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.8	8.3e-65
>prophage 81
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1111774	1112947	4576448		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
AUU30581.1|1111774_1112947_-	aminotransferase class V-fold PLP-dependent enzyme	NA	V5LQ39	Emiliania_huxleyi_virus	29.7	1.9e-37
>prophage 82
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1130716	1131879	4576448	transposase	Acinetobacter_phage(100.0%)	1	NA	NA
AUU30593.1|1130716_1131879_-|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	5.2e-51
>prophage 83
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1147346	1148255	4576448	protease	Yersinia_phage(100.0%)	1	NA	NA
AUU30608.1|1147346_1148255_+|protease	serine protease	protease	A0A2C9D0H9	Yersinia_phage	55.7	1.2e-53
>prophage 84
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1156412	1157567	4576448		Staphylococcus_phage(100.0%)	1	NA	NA
AUU30616.1|1156412_1157567_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	63.2	4.0e-128
>prophage 85
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1174053	1174731	4576448		Bacillus_virus(100.0%)	1	NA	NA
AUU30635.1|1174053_1174731_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	25.1	6.4e-09
>prophage 86
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1192569	1193802	4576448		Catovirus(100.0%)	1	NA	NA
AUU30653.1|1192569_1193802_+	D-3-phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	48.4	1.9e-104
>prophage 87
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1202326	1207706	4576448		Prochlorococcus_phage(50.0%)	3	NA	NA
AUU30663.1|1202326_1205200_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	52.0	1.1e-262
AUU30664.1|1205466_1206210_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AUU30665.1|1206266_1207706_-	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	26.3	3.3e-31
>prophage 88
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1211624	1220000	4576448	tRNA	Brevibacillus_phage(20.0%)	8	NA	NA
AUU30672.1|1211624_1212521_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	28.6	6.7e-30
AUU30673.1|1212545_1213256_+	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA	NA
AUU30674.1|1213261_1214995_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.7	8.3e-61
AUU30675.1|1215085_1216183_+	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	39.0	1.8e-05
AUU30676.1|1216193_1217711_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.7	5.9e-87
AUU30677.1|1217753_1218302_-	isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
AUU30678.1|1218424_1218550_-	hypothetical protein	NA	NA	NA	NA	NA
AUU30679.1|1218551_1220000_-	purine permease	NA	Q9KX94	Enterobacteria_phage	26.5	3.6e-25
>prophage 89
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1223531	1226020	4576448	transposase	Shigella_phage(50.0%)	3	NA	NA
AUU30682.1|1223531_1224804_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AUU30683.1|1225076_1225268_+	formate dehydrogenase	NA	NA	NA	NA	NA
AUU30684.1|1225264_1226020_+	LysM peptidoglycan-binding domain-containing protein	NA	I2E8W3	Clostridium_phage	36.8	1.1e-12
>prophage 90
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1230014	1233652	4576448	transposase	Shigella_phage(50.0%)	3	NA	NA
AUU30689.1|1230014_1231182_+|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
AUU30690.1|1231882_1232476_+	hypothetical protein	NA	NA	NA	NA	NA
AUU30691.1|1232489_1233652_-|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	5.2e-51
>prophage 91
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1238880	1239642	4576448		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
AUU30696.1|1238880_1239642_+	2-deoxy-D-gluconate 3-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.7	5.9e-19
>prophage 92
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1250805	1257578	4576448		Moraxella_phage(33.33%)	6	NA	NA
AUU30705.1|1250805_1251519_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	47.3	2.0e-45
AUU30706.1|1251587_1252277_-	DNA mismatch repair protein MutH	NA	NA	NA	NA	NA
AUU30707.1|1252961_1253492_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AUU30708.1|1253504_1255751_+	phosphoenolpyruvate-protein phosphotransferase PtsP	NA	A0A1V0SGR7	Hokovirus	26.2	2.7e-11
AUU30709.1|1255901_1256777_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AUU30710.1|1256783_1257578_+	thymidylate synthase	NA	A6M9A2	Geobacillus_virus	70.8	7.6e-118
>prophage 93
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1263054	1278492	4576448	tRNA	Klosneuvirus(16.67%)	10	NA	NA
AUU30715.1|1263054_1265943_+	pitrilysin	NA	A0A1V0SJA4	Klosneuvirus	25.7	1.5e-67
AUU30716.1|1265935_1269478_+	exodeoxyribonuclease V subunit beta	NA	G3MA40	Bacillus_virus	21.8	8.9e-09
AUU30717.1|1269477_1271304_+	RecBCD enzyme subunit RecD	NA	A0A1P8DII4	Virus_Rctr197k	27.5	2.3e-24
AUU30718.1|1271365_1272697_-	amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AUU30719.1|1272928_1274182_+	N-acetylmuramoyl-L-alanine amidase	NA	Q5YA51	Bacillus_phage	28.6	2.2e-15
AUU30720.1|1274514_1274634_+	murein transglycosylase	NA	NA	NA	NA	NA
AUU30721.1|1274650_1275748_+	murein transglycosylase A	NA	NA	NA	NA	NA
AUU30722.1|1275986_1276793_+|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	S4VW33	Pandoravirus	33.3	1.7e-16
AUU30723.1|1276843_1277287_-	sulfur acceptor protein CsdE	NA	NA	NA	NA	NA
AUU30724.1|1277286_1278492_-	cysteine desulfurase CsdA	NA	Q2XUY6	environmental_halophage	37.0	8.6e-73
>prophage 94
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1290025	1290781	4576448		Bacillus_phage(100.0%)	1	NA	NA
AUU30734.1|1290025_1290781_-	flap endonuclease Xni	NA	F8WQ40	Bacillus_phage	33.5	3.8e-10
>prophage 95
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1297075	1297924	4576448		Vibrio_phage(100.0%)	1	NA	NA
AUU30739.1|1297075_1297924_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.1	4.7e-41
>prophage 96
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1305457	1309572	4576448		Hokovirus(50.0%)	2	NA	NA
AUU30747.1|1305457_1308214_-	two-component sensor histidine kinase BarA	NA	A0A1V0SGX0	Hokovirus	30.6	4.9e-55
AUU30748.1|1308270_1309572_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	27.9	5.2e-39
>prophage 97
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1312968	1317888	4576448		Only_Syngen_Nebraska_virus(33.33%)	5	NA	NA
AUU30751.1|1312968_1314606_+	CTP synthase (glutamine hydrolyzing)	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	50.4	3.9e-153
AUU30752.1|1314693_1315992_+	enolase	NA	A0A1X9I5Z8	Streptococcus_phage	58.8	2.0e-131
AUU30753.1|1316051_1316924_-	hypothetical protein	NA	NA	NA	NA	NA
AUU30754.1|1316937_1317078_-	hypothetical protein	NA	NA	NA	NA	NA
AUU30755.1|1317216_1317888_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A2I7S8X1	Vibrio_phage	25.0	1.7e-14
>prophage 98
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1338980	1341013	4576448		Hokovirus(50.0%)	2	NA	NA
AUU30772.1|1338980_1340408_+	sulfate adenylyltransferase	NA	A0A1V0SGC3	Hokovirus	31.4	9.7e-31
AUU30773.1|1340407_1341013_+	adenylyl-sulfate kinase	NA	A0A2K9L4R9	Tupanvirus	38.1	1.6e-27
>prophage 99
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1344125	1363328	4576448	transposase	Escherichia_phage(35.71%)	16	NA	NA
AUU30779.1|1344125_1344887_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	47.6	2.9e-58
AUU30780.1|1344880_1345507_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
AUU30781.1|1345646_1346786_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
AUU30782.1|1346848_1347841_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
AUU30783.1|1347960_1348368_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUU30784.1|1348514_1349108_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
AUU30785.1|1349805_1350369_-	hypothetical protein	NA	A0A2D1GNR8	Pseudomonas_phage	52.2	5.0e-31
AUU30786.1|1350521_1350773_+	DNA-binding protein	NA	A0A2D1GNH1	Pseudomonas_phage	53.0	1.1e-17
AUU30787.1|1350774_1352871_+|transposase	transposase	transposase	A0A2D1GNK9	Pseudomonas_phage	48.9	6.1e-175
AUU30788.1|1354251_1355163_+	transcriptional regulator	NA	A0A0C4UQR3	Shigella_phage	41.2	6.1e-55
AUU30789.1|1355178_1355406_+	hypothetical protein	NA	C9DGL3	Escherichia_phage	92.0	2.5e-34
AUU30790.1|1355463_1356159_-|transposase	IS1 family transposase	transposase	A0A077SLN4	Escherichia_phage	92.7	3.1e-123
AUU30791.1|1356192_1356831_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.5	3.5e-81
AUU30792.1|1358086_1358995_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.5	6.6e-118
AUU30793.1|1359190_1359958_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	3.3e-70
AUU30794.1|1360766_1363328_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	1.3e-30
>prophage 100
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1382840	1383851	4576448		Enterobacteria_phage(100.0%)	1	NA	NA
AUU33523.1|1382840_1383851_+	transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.0	2.3e-26
>prophage 101
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1391326	1392292	4576448		Tetraselmis_virus(100.0%)	1	NA	NA
AUU30820.1|1391326_1392292_-	arabinose 5-phosphate isomerase GutQ	NA	A0A2P0VNK5	Tetraselmis_virus	33.9	1.8e-36
>prophage 102
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1397758	1403318	4576448	tRNA	Pseudomonas_phage(25.0%)	5	NA	NA
AUU30828.1|1397758_1398256_+	hypothetical protein	NA	B5TK85	Pseudomonas_phage	49.0	9.8e-31
AUU30829.1|1398335_1399397_+	DNA recombination/repair protein RecA	NA	A0A2D1GPX2	Mycobacterium_phage	63.4	1.2e-113
AUU30830.1|1399639_1400140_+	recombination regulator RecX	NA	NA	NA	NA	NA
AUU30831.1|1400267_1402898_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L1X7	Tupanvirus	38.6	5.5e-80
AUU30832.1|1403132_1403318_+	carbon storage regulator	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
>prophage 103
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1415723	1421019	4576448		Bacillus_virus(20.0%)	5	NA	NA
AUU30843.1|1415723_1416926_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.4	4.9e-28
AUU30844.1|1417280_1418240_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	71.5	7.7e-133
AUU30845.1|1418249_1420394_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	48.4	3.8e-196
AUU30846.1|1420366_1420777_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	44.4	4.6e-18
AUU30847.1|1420773_1421019_-	NrdH-redoxin	NA	Q5K5J3	Oenococcus_phage	35.3	1.8e-06
>prophage 104
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1425725	1430886	4576448		Clostridium_phage(33.33%)	3	NA	NA
AUU30855.1|1425725_1426175_+	peptidoglycan-binding protein LysM	NA	A0A090DBR9	Clostridium_phage	39.5	2.0e-06
AUU30856.1|1428380_1429622_-	DUF4102 domain-containing protein	NA	A0A1B5FPC6	Escherichia_phage	46.3	4.7e-98
AUU30857.1|1430403_1430886_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
>prophage 105
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1440330	1499307	4576448	transposase,tail,bacteriocin,tRNA	Enterobacteria_phage(23.53%)	56	NA	NA
AUU30868.1|1440330_1441098_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AUU30869.1|1441139_1441487_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AUU30870.1|1441563_1442046_-	hypothetical protein	NA	NA	NA	NA	NA
AUU30871.1|1443276_1443795_-	DUF4154 domain-containing protein	NA	NA	NA	NA	NA
AUU30872.1|1443944_1444310_-	DUF2799 domain-containing protein	NA	NA	NA	NA	NA
AUU30873.1|1444519_1445590_+	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	50.9	2.6e-89
AUU30874.1|1445600_1446722_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
AUU30875.1|1446764_1447925_-	P-protein	NA	NA	NA	NA	NA
AUU33526.1|1448023_1448071_-	Phe operon leader peptide	NA	NA	NA	NA	NA
AUU30876.1|1448174_1448516_-	ribosome-associated inhibitor A	NA	NA	NA	NA	NA
AUU30877.1|1448550_1448757_-	hypothetical protein	NA	NA	NA	NA	NA
AUU30878.1|1450213_1452787_-	chaperone protein ClpB	NA	H6X3M6	Enterobacteria_phage	35.2	2.6e-127
AUU30879.1|1452916_1453648_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AUU30880.1|1453644_1454625_-	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
AUU30881.1|1454759_1455497_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AUU30882.1|1462625_1462739_+	alpha-ketoglutarate permease	NA	NA	NA	NA	NA
AUU30883.1|1462720_1464019_+	alpha-ketoglutarate permease	NA	Q6JIH2	Burkholderia_virus	32.2	1.3e-45
AUU30884.1|1464015_1464339_-	hypothetical protein	NA	NA	NA	NA	NA
AUU30885.1|1464384_1465740_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AUU30886.1|1465853_1468514_-	protein lysine acetyltransferase	NA	NA	NA	NA	NA
AUU30887.1|1468545_1469244_-	DTW domain-containing protein	NA	NA	NA	NA	NA
AUU30888.1|1469312_1469732_-	thiol disulfide reductase thioredoxin	NA	A0A0K2FIM3	Achromobacter_phage	38.5	2.8e-15
AUU30889.1|1469745_1469949_+	hypothetical protein	NA	NA	NA	NA	NA
AUU30890.1|1469938_1470976_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
AUU30891.1|1471023_1471713_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	48.8	7.1e-56
AUU30892.1|1472017_1472401_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	72.0	1.4e-32
AUU30893.1|1472456_1473044_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA	NA
AUU33527.1|1473146_1474028_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUU30894.1|1474062_1475397_-	ATP-dependent RNA helicase SrmB	NA	E3T5E1	Cafeteria_roenbergensis_virus	30.8	2.9e-45
AUU33528.1|1475528_1476266_+|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	tRNA	NA	NA	NA	NA
AUU30895.1|1476250_1477873_-	L-aspartate oxidase	NA	NA	NA	NA	NA
AUU30896.1|1478280_1478856_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
AUU30897.1|1478888_1479539_+	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
AUU30898.1|1479538_1480495_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
AUU30899.1|1480491_1480971_+	SoxR reducing system protein RseC	NA	NA	NA	NA	NA
AUU30900.1|1481168_1482968_+	elongation factor 4	NA	A0A2K9L6L3	Tupanvirus	41.9	4.2e-23
AUU30901.1|1482983_1483958_+	S26 family signal peptidase	NA	NA	NA	NA	NA
AUU30902.1|1484007_1484286_-	hypothetical protein	NA	NA	NA	NA	NA
AUU30903.1|1484229_1484910_+	ribonuclease 3	NA	A0A2P0VNZ5	Tetraselmis_virus	39.6	5.6e-21
AUU30904.1|1484906_1485812_+	GTPase Era	NA	NA	NA	NA	NA
AUU30905.1|1485823_1486552_+	DNA repair protein RecO	NA	NA	NA	NA	NA
AUU30906.1|1486563_1487295_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AUU30907.1|1487294_1487675_+	holo-ACP synthase	NA	NA	NA	NA	NA
AUU30908.1|1487933_1488098_+	hypothetical protein	NA	NA	NA	NA	NA
AUU30909.1|1488094_1488175_+	small toxic protein ShoB	NA	NA	NA	NA	NA
AUU30910.1|1488368_1488629_-	ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.5	4.9e-18
AUU30911.1|1488843_1489944_+	recombinase	NA	NA	NA	NA	NA
AUU30912.1|1489984_1491141_-|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
AUU30913.1|1491220_1491358_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AUU30914.1|1492488_1492692_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AUU30915.1|1492701_1493163_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	4.0e-10
AUU30916.1|1493159_1493507_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	9.2e-44
AUU30917.1|1496037_1497024_+|tail	phage tail protein	tail	Q8W613	Enterobacteria_phage	80.3	7.1e-65
AUU30918.1|1496948_1498222_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	8.8e-177
AUU30919.1|1498285_1498759_+|tail	phage tail protein	tail	Q7Y4D4	Escherichia_virus	50.9	1.6e-35
AUU30920.1|1498761_1499307_+|tail	tail fiber assembly protein	tail	Q8W612	Enterobacteria_phage	73.1	2.5e-72
>prophage 106
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1508655	1519944	4576448		Bacillus_phage(50.0%)	7	NA	NA
AUU30929.1|1508655_1512543_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	58.6	2.2e-130
AUU30930.1|1513100_1514528_+	two component system sensor histidine kinase QseE/GlrK	NA	W8CYF6	Bacillus_phage	24.9	2.3e-16
AUU30931.1|1514692_1515406_+	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA	NA
AUU30932.1|1515395_1516730_+	two-component system response regulator GlrR	NA	W8CYM9	Bacillus_phage	37.3	3.9e-10
AUU30933.1|1516790_1517129_+	nitrogen regulatory protein P-II 1	NA	NA	NA	NA	NA
AUU30934.1|1517173_1518364_-	flavohemoprotein	NA	NA	NA	NA	NA
AUU30935.1|1518690_1519944_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.7	7.8e-101
>prophage 107
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1524745	1528122	4576448	transposase	Escherichia_phage(50.0%)	3	NA	NA
AUU30938.1|1524745_1525441_-|transposase	IS1 family transposase	transposase	A0A077SLN4	Escherichia_phage	92.2	8.9e-123
AUU30939.1|1525616_1526588_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUU30940.1|1526610_1528122_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.3	3.3e-13
>prophage 108
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1543268	1549606	4576448		Faustovirus(20.0%)	8	NA	NA
AUU30954.1|1543268_1544483_+	IscS subfamily cysteine desulfurase	NA	A0A1X7C038	Faustovirus	31.8	8.8e-33
AUU30955.1|1544510_1544897_+	iron-sulfur cluster scaffold-like protein	NA	A0A218MKD1	uncultured_virus	78.9	1.4e-53
AUU30956.1|1544913_1545237_+	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7N5	Lake_Baikal_phage	48.6	5.4e-22
AUU30957.1|1545332_1545848_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AUU30958.1|1545864_1547715_+	molecular chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.6	7.2e-103
AUU30959.1|1547716_1548052_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AUU30960.1|1548063_1548264_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AUU30961.1|1548322_1549606_+	peptidase B	NA	Q6GYZ8	Mycoplasma_phage	37.8	2.2e-34
>prophage 109
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1555451	1555883	4576448		Powai_lake_megavirus(100.0%)	1	NA	NA
AUU30963.1|1555451_1555883_+	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	37.9	3.7e-18
>prophage 110
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1564713	1572534	4576448	transposase	Escherichia_phage(50.0%)	8	NA	NA
AUU30972.1|1564713_1566084_-	exodeoxyribonuclease VII large subunit	NA	A0A2H4UVM9	Bodo_saltans_virus	35.3	4.0e-42
AUU30973.1|1566245_1567712_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	39.1	2.3e-88
AUU30974.1|1567780_1569358_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA	NA
AUU30975.1|1569644_1570917_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AUU30976.1|1571343_1571862_-	hypothetical protein	NA	G9L6F1	Escherichia_phage	99.4	6.5e-62
AUU30977.1|1571964_1572111_-	succinate dehydrogenase	NA	NA	NA	NA	NA
AUU30978.1|1572172_1572364_-	DUF2633 domain-containing protein	NA	G9L6F2	Escherichia_phage	98.4	3.6e-26
AUU30979.1|1572381_1572534_+	hypothetical protein	NA	G9L6F3	Escherichia_phage	96.0	1.7e-18
>prophage 111
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1580824	1584826	4576448		Prochlorococcus_phage(33.33%)	5	NA	NA
AUU30984.1|1580824_1581463_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	42.9	2.4e-29
AUU30985.1|1581462_1582500_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.3	1.1e-71
AUU30986.1|1582518_1582704_-	hypothetical protein	NA	NA	NA	NA	NA
AUU30987.1|1582824_1583451_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AUU30988.1|1583536_1584826_+	uracil/xanthine transporter	NA	Q9KX94	Enterobacteria_phage	36.7	6.6e-63
>prophage 112
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1606119	1606833	4576448		Synechococcus_phage(100.0%)	1	NA	NA
AUU31004.1|1606119_1606833_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	36.1	4.1e-38
>prophage 113
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1624183	1625134	4576448		Cyanophage(100.0%)	1	NA	NA
AUU31016.1|1624183_1625134_-	transaldolase	NA	A0A127KNC6	Cyanophage	31.3	5.7e-11
>prophage 114
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1630693	1631387	4576448	transposase	Escherichia_phage(100.0%)	1	NA	NA
AUU31021.1|1630693_1631387_+|transposase	IS1 family transposase	transposase	A0A0U2RK18	Escherichia_phage	96.1	3.7e-129
>prophage 115
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1640562	1641768	4576448		Enterobacteria_phage(100.0%)	1	NA	NA
AUU31034.1|1640562_1641768_-	DUF4102 domain-containing protein	NA	Q7M297	Enterobacteria_phage	39.6	9.2e-75
>prophage 116
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1647415	1650991	4576448		Deep-sea_thermophilic_phage(50.0%)	5	NA	NA
AUU31040.1|1647415_1648285_-	N-acetylmuramoyl-L-alanine amidase AmiA	NA	E5DV68	Deep-sea_thermophilic_phage	27.4	4.2e-13
AUU31041.1|1648498_1648924_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
AUU31042.1|1648910_1649360_+	DUF2919 domain-containing protein	NA	NA	NA	NA	NA
AUU31043.1|1649420_1649996_+	RpoE-regulated lipoprotein	NA	NA	NA	NA	NA
AUU31044.1|1650091_1650991_+	peroxidase	NA	S4VVJ7	Pandoravirus	32.6	5.9e-26
>prophage 117
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1654645	1655437	4576448		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
AUU31047.1|1654645_1655437_+	oxidoreductase UcpA	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.6	6.8e-18
>prophage 118
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1658454	1671012	4576448		Streptococcus_phage(40.0%)	11	NA	NA
AUU31051.1|1658454_1659552_+	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	34.1	4.2e-26
AUU31052.1|1659685_1660597_+	cysteine synthase B	NA	A0A1X9I5F1	Streptococcus_phage	41.6	7.7e-58
AUU31053.1|1661556_1661931_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31054.1|1662035_1662887_+	pyridoxine kinase	NA	NA	NA	NA	NA
AUU31055.1|1662928_1663438_-	glucose-specific phosphotransferase enzyme IIA component	NA	NA	NA	NA	NA
AUU31056.1|1663478_1665206_-	phosphoenolpyruvate-protein phosphotransferase PtsI	NA	A0A1V0SGR7	Hokovirus	31.1	9.6e-17
AUU31057.1|1665250_1665508_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
AUU31058.1|1665891_1666863_-	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	51.0	2.2e-74
AUU31059.1|1667047_1667809_-	sulfate transporter CysZ	NA	NA	NA	NA	NA
AUU31060.1|1668038_1668926_+	cell division protein ZipA	NA	NA	NA	NA	NA
AUU31061.1|1668996_1671012_+	DNA ligase (NAD(+)) LigA	NA	A0A0K2QQN8	Ralstonia_phage	43.3	1.5e-149
>prophage 119
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1692499	1693234	4576448		Clostridioides_phage(100.0%)	1	NA	NA
AUU31079.1|1692499_1693234_-	DNA-binding response regulator	NA	A0A2R2ZGH8	Clostridioides_phage	25.4	3.6e-13
>prophage 120
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1697051	1697972	4576448		Morganella_phage(100.0%)	1	NA	NA
AUU31082.1|1697051_1697972_-	lipid A biosynthesis palmitoleoyltransferase	NA	A0A1W6JP29	Morganella_phage	54.8	4.9e-76
>prophage 121
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1701655	1709232	4576448		Ostreococcus_lucimarinus_virus(50.0%)	4	NA	NA
AUU31087.1|1701655_1703350_+	oxalyl-CoA decarboxylase	NA	E5ERI2	Ostreococcus_lucimarinus_virus	23.6	3.0e-23
AUU31088.1|1703419_1704364_+	transporter YfdV	NA	NA	NA	NA	NA
AUU31089.1|1704437_1705583_+	CoA:oxalate CoA-transferase	NA	NA	NA	NA	NA
AUU31090.1|1705638_1709232_-	two-component system sensor histidine kinase EvgS	NA	W8CYM9	Bacillus_phage	40.0	1.1e-09
>prophage 122
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1715873	1723026	4576448	transposase	Enterobacteria_phage(50.0%)	6	NA	NA
AUU31095.1|1715873_1717307_-	glycosyl hydrolase family 32	NA	F8WPR5	Bacillus_phage	25.0	3.5e-28
AUU31096.1|1717622_1718951_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AUU31097.1|1718960_1719875_+	aminoimidazole riboside kinase	NA	NA	NA	NA	NA
AUU31098.1|1720144_1721312_+|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
AUU31099.1|1721287_1721782_-	DUF4102 domain-containing protein	NA	A5VW56	Enterobacteria_phage	97.5	2.0e-84
AUU31100.1|1722093_1723026_-	transporter	NA	E7DYY8	Enterobacteria_phage	100.0	1.2e-167
>prophage 123
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1741506	1742592	4576448		Pandoravirus(100.0%)	1	NA	NA
AUU31116.1|1741506_1742592_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	48.4	7.0e-90
>prophage 124
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1751138	1752275	4576448		Brazilian_cedratvirus(100.0%)	1	NA	NA
AUU31125.1|1751138_1752275_+	erythronate-4-phosphate dehydrogenase	NA	A0A2R8FDS8	Brazilian_cedratvirus	29.4	9.1e-24
>prophage 125
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1758751	1760269	4576448		Mollivirus(100.0%)	1	NA	NA
AUU31133.1|1758751_1760269_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	44.0	5.9e-87
>prophage 126
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1764480	1766341	4576448	transposase	Planktothrix_phage(50.0%)	2	NA	NA
AUU31139.1|1764480_1765254_+	histidine transport ATP-binding protein HisP	NA	G9BWD6	Planktothrix_phage	38.1	2.4e-23
AUU31140.1|1765450_1766341_+|transposase	ISNCY family transposase	transposase	Q2A0A7	Sodalis_phage	43.6	7.5e-66
>prophage 127
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1776900	1780128	4576448		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
AUU31152.1|1776900_1777551_+	sugar phosphatase	NA	M1IMD4	Acanthocystis_turfacea_Chlorella_virus	27.5	2.8e-09
AUU31153.1|1777637_1779470_+	SLC13 family permease	NA	NA	NA	NA	NA
AUU31154.1|1779528_1780128_-	5'-deoxynucleotidase	NA	A0A2L0V156	Salmonella_phage	38.6	7.0e-07
>prophage 128
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1815331	1820335	4576448		Tupanvirus(50.0%)	4	NA	NA
AUU31184.1|1815331_1817314_-	bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	NA	A0A2K9KZK0	Tupanvirus	25.8	1.8e-19
AUU31185.1|1817313_1818282_-	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	NA	F1C5B0	Cronobacter_phage	31.2	2.0e-35
AUU33538.1|1818285_1819425_-	UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase	NA	A0A2K9L470	Tupanvirus	29.8	8.5e-30
AUU31186.1|1819732_1820335_+	histidine phosphatase family protein	NA	A0A2L1IV13	Escherichia_phage	42.9	7.5e-09
>prophage 129
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1823714	1824614	4576448		Sodalis_phage(100.0%)	1	NA	NA
AUU31192.1|1823714_1824614_-	hypothetical protein	NA	Q2A0A7	Sodalis_phage	53.6	2.4e-67
>prophage 130
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1830506	1846823	4576448	transposase	Pseudomonas_phage(28.57%)	12	NA	NA
AUU31197.1|1830506_1831583_+	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	46.0	5.1e-08
AUU31198.1|1831624_1831831_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31199.1|1832030_1832681_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31200.1|1832734_1832989_-	2Fe-2S ferredoxin	NA	G9IAA2	Pseudomonas_phage	74.6	1.5e-24
AUU33539.1|1832988_1834119_-	ribonucleotide-diphosphate reductase subunit beta	NA	G9IAA3	Pseudomonas_phage	78.9	2.5e-175
AUU31201.1|1834352_1836638_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2D1GNB1	Pseudoalteromonas_phage	63.6	2.5e-283
AUU31202.1|1838110_1838377_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31203.1|1838301_1839575_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.0e-176
AUU31204.1|1839593_1841255_+	AidA family protein	NA	NA	NA	NA	NA
AUU33540.1|1841330_1843199_+	AIDA-I family autotransporter YfaL	NA	A0A2L1IV18	Escherichia_phage	25.5	2.9e-19
AUU31205.1|1843326_1844049_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
AUU31206.1|1844195_1846823_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	30.4	8.1e-92
>prophage 131
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1851628	1852796	4576448	transposase	Shigella_phage(100.0%)	1	NA	NA
AUU31209.1|1851628_1852796_+|transposase	transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
>prophage 132
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1857777	1860627	4576448		Hokovirus(100.0%)	1	NA	NA
AUU31212.1|1857777_1860627_+	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	27.2	1.4e-41
>prophage 133
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1864903	1868330	4576448		Enterobacteria_phage(50.0%)	3	NA	NA
AUU31216.1|1864903_1866025_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.7	1.2e-116
AUU31217.1|1866136_1867192_+	FAD:protein FMN transferase ApbE	NA	NA	NA	NA	NA
AUU31218.1|1867265_1868330_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	49.5	3.1e-18
>prophage 134
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1879383	1880007	4576448		Bacillus_virus(100.0%)	1	NA	NA
AUU31230.1|1879383_1880007_+	heme ABC transporter ATP-binding protein CcmA	NA	G3M9Y6	Bacillus_virus	25.5	1.5e-12
>prophage 135
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1891881	1899530	4576448		Vibrio_phage(50.0%)	7	NA	NA
AUU31243.1|1891881_1892889_+	nucleoid-associated protein	NA	A0A1V0E8C0	Vibrio_phage	48.3	1.5e-83
AUU31244.1|1893027_1893312_-	50S ribosomal protein L25	NA	NA	NA	NA	NA
AUU31245.1|1893436_1895197_-	ATP-dependent helicase	NA	M4Q3N1	Vibrio_phage	41.6	1.6e-99
AUU31246.1|1895346_1896042_+	16S rRNA pseudouridine(516) synthase	NA	NA	NA	NA	NA
AUU31247.1|1896069_1897260_+	Bcr/CflA family drug resistance efflux transporter	NA	S4TR35	Salmonella_phage	23.4	3.2e-19
AUU31248.1|1897592_1897937_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31249.1|1897940_1899530_-	microcin C ABC transporter ATP-binding protein YejF	NA	G9BWD6	Planktothrix_phage	34.0	1.1e-19
>prophage 136
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1905284	1909585	4576448		Clostridioides_phage(50.0%)	4	NA	NA
AUU31254.1|1905284_1905851_-	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA	A0A1V0DZX6	Clostridioides_phage	40.7	4.2e-14
AUU31255.1|1906262_1906976_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AUU31256.1|1907014_1908001_-	GTP-binding protein	NA	NA	NA	NA	NA
AUU31257.1|1908118_1909585_-	mannitol dehydrogenase family protein	NA	H8ZJP8	Ostreococcus_tauri_virus	29.3	6.6e-43
>prophage 137
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1924859	1925717	4576448		Catovirus(100.0%)	1	NA	NA
AUU31271.1|1924859_1925717_-	endonuclease	NA	A0A1V0SBL9	Catovirus	34.0	1.1e-24
>prophage 138
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1929786	1981664	4576448	integrase,lysis,tail,tRNA,transposase	Enterobacteria_phage(60.0%)	45	1963144:1963163	1973257:1973276
AUU31275.1|1929786_1931778_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	36.6	2.0e-13
AUU31276.1|1931809_1932646_-	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
AUU31277.1|1932573_1932750_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31278.1|1932806_1932920_+|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
AUU31279.1|1932903_1933572_+	GTP cyclohydrolase I FolE	NA	M1Q6X8	Cellulophaga_phage	56.3	9.0e-56
AUU31280.1|1933588_1934746_+	DUF418 family protein	NA	NA	NA	NA	NA
AUU31281.1|1934694_1934898_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31282.1|1934887_1935856_+	HTH-type transcriptional regulator GalS	NA	NA	NA	NA	NA
AUU31283.1|1936206_1937205_+	galactose ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUU31284.1|1937265_1938786_+	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	33.0	2.6e-10
AUU31285.1|1938801_1939812_+	galactoside ABC transporter permease	NA	NA	NA	NA	NA
AUU31286.1|1939847_1941083_-	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA	NA	NA	NA	NA
AUU31287.1|1942509_1942749_-	DUF2542 domain-containing protein	NA	NA	NA	NA	NA
AUU31288.1|1942751_1943471_-	protein SanA	NA	NA	NA	NA	NA
AUU31289.1|1943620_1944505_-	cytidine deaminase	NA	NA	NA	NA	NA
AUU31290.1|1944634_1945330_-|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
AUU31291.1|1945326_1945725_-	hypothetical protein	NA	NA	NA	NA	NA
AUU33543.1|1945963_1946881_+|tRNA	tRNA dihydrouridine(16) synthase DusC	tRNA	NA	NA	NA	NA
AUU31292.1|1947664_1947748_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31293.1|1947971_1949408_+	multidrug transporter permease	NA	NA	NA	NA	NA
AUU31294.1|1950338_1950917_-	DedA family protein	NA	NA	NA	NA	NA
AUU31295.1|1951086_1951674_+	YIP1 family protein	NA	NA	NA	NA	NA
AUU31296.1|1951847_1952780_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AUU31297.1|1952817_1954533_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
AUU31298.1|1954728_1957026_+	beta-glucosidase BglX	NA	NA	NA	NA	NA
AUU31299.1|1957277_1958195_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUU31300.1|1960283_1961015_+	osmoprotectant uptake system permease	NA	NA	NA	NA	NA
AUU31301.1|1960995_1961103_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31302.1|1961660_1962874_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	99.0	4.2e-168
1963144:1963163	attL	CACGCGCGTAACGTGACAGG	NA	NA	NA	NA
AUU31303.1|1963201_1963999_-|integrase	site-specific integrase	integrase	H6WZF6	Escherichia_phage	98.0	2.4e-148
AUU31304.1|1964037_1965193_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.0e-67
AUU31305.1|1966976_1967522_+|tail	tail fiber assembly protein	tail	Q8W612	Enterobacteria_phage	73.1	2.5e-72
AUU31306.1|1968910_1969534_+	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	74.9	7.3e-76
AUU31307.1|1969533_1969713_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31308.1|1969713_1971357_-	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
AUU33544.1|1971672_1972299_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUU31309.1|1972397_1972667_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	81.7	1.2e-19
AUU31310.1|1972782_1973031_-	damage-inducible protein DinI	NA	A5LH55	Enterobacteria_phage	97.6	4.1e-38
AUU31311.1|1973428_1974757_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
1973257:1973276	attR	CACGCGCGTAACGTGACAGG	NA	NA	NA	NA
AUU33545.1|1974982_1976668_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
AUU31312.1|1976664_1977384_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUU31313.1|1977430_1977901_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	98.7	2.6e-81
AUU31314.1|1977941_1978403_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	99.3	1.6e-75
AUU31315.1|1978527_1980531_-	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	96.4	0.0e+00
AUU31316.1|1980527_1981664_-	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.4	3.2e-162
>prophage 139
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	1994047	1997633	4576448	transposase,tRNA	Acinetobacter_phage(50.0%)	3	NA	NA
AUU31318.1|1994047_1995204_-|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
AUU31319.1|1995255_1995459_-	WGR domain-containing protein	NA	NA	NA	NA	NA
AUU31320.1|1995599_1997633_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	3.0e-54
>prophage 140
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2008304	2009123	4576448		Paenibacillus_phage(100.0%)	1	NA	NA
AUU31332.1|2008304_2009123_+	glycoside hydrolase family 25 protein	NA	D0R7H8	Paenibacillus_phage	37.1	2.5e-23
>prophage 141
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2020177	2026285	4576448		Bacillus_phage(50.0%)	6	NA	NA
AUU31342.1|2020177_2021077_-	lipid kinase YegS	NA	A0A1V0SBJ0	Catovirus	29.0	9.8e-13
AUU31343.1|2021482_2021800_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31344.1|2021787_2021979_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31345.1|2022141_2023503_-	U32 family peptidase	NA	Q6DW11	Phage_TP	99.5	7.1e-217
AUU31346.1|2024162_2024885_-	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	33.6	1.3e-31
AUU31347.1|2024881_2026285_-	two-component system sensor histidine kinase BaeA	NA	W8CYF6	Bacillus_phage	29.8	9.2e-34
>prophage 142
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2039858	2041211	4576448		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
AUU31355.1|2039858_2041211_-	molecular chaperone	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	20.6	6.0e-06
>prophage 143
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2047379	2057016	4576448		Catovirus(25.0%)	7	NA	NA
AUU31358.1|2047379_2048021_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	36.9	3.2e-34
AUU31359.1|2048112_2048694_+	dCTP deaminase	NA	I4AZP2	Saccharomonospora_phage	42.1	1.3e-31
AUU31360.1|2048715_2050569_+	outer membrane assembly protein AsmA	NA	NA	NA	NA	NA
AUU31361.1|2051020_2052604_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.6	7.2e-35
AUU31362.1|2053262_2054402_+	polysaccharide export protein Wza	NA	NA	NA	NA	NA
AUU31363.1|2054407_2054851_+	low molecular weight protein-tyrosine-phosphatase Wzb	NA	NA	NA	NA	NA
AUU31364.1|2054853_2057016_+	tyrosine-protein kinase Wzc	NA	A0A1X9I5D6	Streptococcus_phage	29.8	1.9e-17
>prophage 144
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2062027	2068733	4576448		Synechococcus_phage(25.0%)	5	NA	NA
AUU31368.1|2062027_2063149_+	GDP-mannose 4,6-dehydratase	NA	M4QRT5	Synechococcus_phage	64.9	1.5e-132
AUU31369.1|2063151_2064120_+	GDP-L-fucose synthase	NA	D1LW79	Prochlorococcus_phage	50.5	6.4e-87
AUU31370.1|2064119_2064599_+	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA	NA
AUU31371.1|2065821_2067258_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	29.2	4.3e-47
AUU31372.1|2067362_2068733_+	phosphomannomutase CpsG	NA	A0A127AWJ1	Bacillus_phage	27.7	2.9e-32
>prophage 145
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2075918	2080656	4576448		Enterobacteria_phage(60.0%)	5	NA	NA
AUU31378.1|2075918_2076812_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.0	1.0e-46
AUU31379.1|2077184_2078270_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.6	5.7e-100
AUU31380.1|2078269_2079169_+	NAD(P)-dependent oxidoreductase	NA	A0A291LA50	Escherichia_phage	35.6	4.4e-29
AUU31381.1|2079227_2080106_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.1	1.1e-106
AUU31382.1|2080110_2080656_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	57.3	3.5e-50
>prophage 146
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2084917	2091004	4576448		Shigella_phage(33.33%)	5	NA	NA
AUU31386.1|2084917_2085292_+	bactoprenol-linked glucose translocase	NA	U5P0S6	Shigella_phage	46.0	4.6e-17
AUU33548.1|2086464_2087064_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31387.1|2087713_2088073_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31388.1|2088181_2089588_+	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.3	1.4e-37
AUU31389.1|2089837_2091004_+	UDP-glucose 6-dehydrogenase	NA	M1I798	Paramecium_bursaria_Chlorella_virus	51.9	1.1e-109
>prophage 147
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2098446	2099346	4576448		Cellulophaga_phage(100.0%)	1	NA	NA
AUU31397.1|2098446_2099346_-	ATP phosphoribosyltransferase	NA	A0A0F7Q4B0	Cellulophaga_phage	94.7	1.8e-11
>prophage 148
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2108441	2211207	4576448	capsid,integrase,portal,holin,lysis,tail,head,terminase,transposase	Enterobacteria_phage(30.43%)	95	2146319:2146378	2216342:2217605
AUU31406.1|2108441_2109715_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	98.3	3.7e-175
AUU31407.1|2110826_2111501_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
AUU31408.1|2111497_2111845_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	72.9	2.7e-43
AUU31409.1|2111864_2113466_+|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.2	7.0e-147
AUU31410.1|2114262_2115864_-|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.2	7.0e-147
AUU31411.1|2115883_2116231_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	72.9	2.7e-43
AUU31412.1|2116971_2117271_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31413.1|2117442_2117772_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31414.1|2119324_2120002_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31415.1|2120137_2121208_-	phospholipase	NA	NA	NA	NA	NA
AUU31416.1|2121204_2122110_-	chemotaxis protein	NA	NA	NA	NA	NA
AUU31417.1|2126686_2127130_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31418.1|2127644_2128487_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31419.1|2129209_2129332_+	cobalamin biosynthesis protein	NA	NA	NA	NA	NA
AUU31420.1|2129483_2130029_+	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA	NA
AUU31421.1|2130025_2130769_+	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA	NA
AUU31422.1|2130780_2131860_+	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA	NA
AUU33552.1|2131924_2132857_+	L,D-transpeptidase	NA	NA	NA	NA	NA
AUU31423.1|2133314_2134232_+	nitrogen assimilation transcriptional regulator	NA	NA	NA	NA	NA
AUU31424.1|2134333_2135284_+	transcriptional regulator Cbl	NA	NA	NA	NA	NA
AUU31425.1|2137660_2138377_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AUU33553.1|2141052_2141757_-	MFS transporter	NA	NA	NA	NA	NA
AUU31426.1|2141818_2142986_+|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	99.7	1.1e-184
AUU31427.1|2143093_2144356_-	DUF4102 domain-containing protein	NA	A0A1B0VMI6	Pseudomonas_phage	39.3	1.1e-73
AUU33554.1|2144693_2145491_-	protein MtfA	NA	NA	NA	NA	NA
2146319:2146378	attL	TGAGGTAGCCTGAGTTTAACGGACACTCCTTCCTGAAATAGAATGGCATCAGAAGGAGCT	NA	NA	NA	NA
AUU31428.1|2146382_2147538_+|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	3.0e-67
AUU31429.1|2148018_2148222_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AUU31430.1|2148280_2148595_-	exodeoxyribonuclease VIII	NA	K7PLW7	Enterobacteria_phage	62.6	2.1e-31
AUU33555.1|2149392_2149809_+	hypothetical protein	NA	A0A076GCN9	Escherichia_phage	72.0	1.5e-24
AUU31431.1|2150021_2150201_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31432.1|2150403_2150616_+	type I toxin-antitoxin system hok family toxin	NA	A0A0U2QV81	Escherichia_phage	94.3	2.5e-28
AUU33556.1|2150783_2151062_+	hypothetical protein	NA	I6PCV7	Cronobacter_phage	43.8	2.4e-10
AUU31433.1|2151063_2152122_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	47.7	7.5e-89
AUU31434.1|2152122_2152488_+	hypothetical protein	NA	V5URS4	Shigella_phage	68.1	7.1e-39
AUU31435.1|2152484_2153195_+	antiterminator	NA	I6PDF8	Cronobacter_phage	48.3	6.7e-57
AUU31436.1|2153995_2154211_+|holin	holin	holin	M1FN85	Enterobacteria_phage	98.6	5.3e-34
AUU31437.1|2154309_2154984_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
AUU31438.1|2154980_2155328_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	72.9	2.7e-43
AUU31439.1|2156225_2157381_+|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	4.0e-67
AUU31440.1|2158733_2159198_+|lysis	lysis protein	lysis	A0A0K2FJD0	Enterobacteria_phage	90.8	1.2e-67
AUU31441.1|2159240_2159591_+	HNH endonuclease	NA	Q8W633	Enterobacteria_phage	99.1	4.7e-64
AUU31442.1|2159738_2160221_+|terminase	phage terminase small subunit P27 family	terminase	A0A1B5FPA0	Escherichia_phage	97.5	1.9e-84
AUU31443.1|2160220_2161978_+|terminase	terminase large subunit	terminase	A0A1B5FP96	Escherichia_phage	99.7	0.0e+00
AUU31444.1|2161989_2162172_+	hypothetical protein	NA	A0A1B5FP99	Escherichia_phage	78.3	3.1e-19
AUU31445.1|2162171_2163413_+|portal	phage portal protein	portal	Q8W629	Enterobacteria_phage	93.5	2.2e-228
AUU31446.1|2163354_2165121_+|capsid	phage major capsid protein	capsid	Q8W627	Enterobacteria_phage	99.2	5.7e-198
AUU31447.1|2165165_2165489_+|head,tail	phage gp6-like head-tail connector protein	head,tail	Q8W626	Enterobacteria_phage	99.1	9.7e-56
AUU31448.1|2165485_2165902_+|head,tail	head-tail adaptor protein	head,tail	Q8HAC9	Salmonella_phage	69.1	9.0e-46
AUU31449.1|2165867_2166392_+	hypothetical protein	NA	Q8W625	Enterobacteria_phage	97.1	3.3e-93
AUU31450.1|2166960_2167122_+	DUF2635 domain-containing protein	NA	Q8SBH3	Shigella_phage	76.6	9.2e-15
AUU31451.1|2167118_2168615_+|tail	phage tail protein	tail	Q8W623	Enterobacteria_phage	97.4	5.9e-273
AUU31452.1|2168614_2168971_+|tail	phage tail protein	tail	Q8W622	Enterobacteria_phage	98.3	5.3e-63
AUU31453.1|2169391_2171341_+|tail	phage tail tape measure protein	tail	Q8W620	Enterobacteria_phage	97.8	0.0e+00
AUU31454.1|2172449_2173073_+	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	74.9	7.3e-76
AUU31455.1|2173072_2173252_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31456.1|2173252_2174896_-	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
AUU33557.1|2175211_2175838_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUU31457.1|2175936_2176206_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	81.7	1.2e-19
AUU31458.1|2176178_2176358_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31459.1|2176918_2177248_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31460.1|2177283_2177934_-	metal-binding protein ZinT	NA	NA	NA	NA	NA
AUU31461.1|2179939_2180353_-	hydroxyisourate hydrolase	NA	NA	NA	NA	NA
AUU31462.1|2180485_2181157_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.2	5.4e-32
AUU31463.1|2181156_2182515_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
AUU31464.1|2182622_2183474_-	Molecular chaperone Hsp31 and glyoxalase 3	NA	NA	NA	NA	NA
AUU31465.1|2183519_2184023_-	hypothetical protein	NA	U5P0U6	Shigella_phage	92.5	4.5e-84
AUU31466.1|2183941_2184217_-	hypothetical protein	NA	Q71TE9	Escherichia_phage	93.4	6.6e-45
AUU31467.1|2185849_2187122_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	95.7	4.2e-171
AUU31468.1|2187047_2187935_-	porin	NA	Q1MVN1	Enterobacteria_phage	51.9	9.8e-66
AUU31469.1|2187961_2189108_+|transposase	transposase	transposase	U5P429	Shigella_phage	92.6	2.3e-147
AUU31470.1|2189169_2189367_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31471.1|2190013_2191432_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	55.1	1.0e-101
AUU31472.1|2191412_2191883_+	very short patch repair endonuclease	NA	E5E3X5	Burkholderia_phage	47.6	7.6e-33
AUU31473.1|2191871_2192792_-	drug/metabolite exporter YedA	NA	NA	NA	NA	NA
AUU31474.1|2192964_2193882_+	DUF808 domain-containing protein	NA	NA	NA	NA	NA
AUU31475.1|2193960_2194143_+	DUF2158 domain-containing protein	NA	NA	NA	NA	NA
AUU31476.1|2194301_2195515_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	98.6	2.1e-167
AUU31477.1|2195626_2197321_+	cellulose biosynthesis regulator YedQ	NA	A0A127AWB9	Bacillus_phage	35.6	2.2e-18
AUU31478.1|2198430_2198658_-	DUF2525 domain-containing protein	NA	NA	NA	NA	NA
AUU31479.1|2198820_2199009_+	protein DsrB	NA	NA	NA	NA	NA
AUU31480.1|2199052_2199676_-	transcriptional regulator RcsA	NA	NA	NA	NA	NA
AUU31481.1|2199960_2200746_-	flagellar type III secretion system protein FliR	NA	NA	NA	NA	NA
AUU31482.1|2200754_2201024_-	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AUU31483.1|2201033_2201771_-	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AUU31484.1|2201770_2202136_-	flagellar type III secretion system protein FliO	NA	NA	NA	NA	NA
AUU31485.1|2202138_2202552_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AUU31486.1|2202548_2203553_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AUU31487.1|2203557_2204022_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AUU31488.1|2204126_2205254_-	flagellar hook length control protein FliK	NA	NA	NA	NA	NA
AUU31489.1|2205250_2205694_-	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA	NA
AUU31490.1|2205712_2207086_-	flagellum-specific ATP synthase FliL	NA	NA	NA	NA	NA
AUU31491.1|2207085_2207772_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AUU31492.1|2207764_2208760_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AUU31493.1|2210624_2210939_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AUU31494.1|2211027_2211207_-|integrase	integrase	integrase	NA	NA	NA	NA
2216342:2217605	attR	TGAGGTAGCCTGAGTTTAACGGACACTCCTTCCTGAAATAGAATGGCATCAGAAGGAGCTAATAATGAGCAGAAAAACCCAACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCTTGAAAATCAACTTTCGATCAGTGAAGGCGCTTCCCGATTATCCCTTCCTGAAGGCACTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTACTCCTGGTTCCCGCACGGTGGCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGAGCGAGATATATTAAAAAAAGCAACAGCGTATTTTGCACAGGAGTCGCTGAAAAATACGCGTTAATCGAACAATGGCGACAACAATTTCCCATTGAAGCGATGTGTCAGGTATTTGGTGTATCCAGGAGCGGTTATTACAACTGGGTACAGCATGAACCCTCAGACAGAAAACAAAGTGATGAGCGGCTAAAACTGGAGATTAGGGTGGCACATATCCGCACTCGCGAAACATATGGAACCCGGCGGCTCCAGACGGAGCTGGCAGAGAATGGCATCATCGTTGGTCGTGACCGACTGGCACGTCTTCGTAAGGAGCTGAGGCTACGCTGTAAGCAGAAACGCAAGTTCAGAGCGACTACGAACCCGAACCACAATCTGCCAGTTGCGCCAAATCTGCTGAACCAGACGTTCGCTCCTACAGCACCAAATCAGGTCTGGGTGGCGGACCTGACGTATGTTGCCACACAGGAGGGATGGTTGTACCTCGCTGGCATCAAAGATGTTTATACGTGCGAAATTGTCGGCTACGCCATGGGAGAGCGCATGACAAAAGAGCTGACAGGTAAAGCCCTGTTTATGGCGCTCAGGAGCCAGCGCCCACCTGCCGGGCTAATCCACCACTCTGATCGAGGTTCACAGTACTGCGCATACGATTACCGGGTCATACAGGAGCAGTTTGGTCTGAAAACATCAATGTCGCGTAAAGGTAACTGTTACGACAACGCTCCGATGGAAAGCTTCTGGGGAACGCTGAAAAATGAGAGCCTGAGCCACTATCGTTTTAATAACCGGGATGAAGCCATCTCAGTAATACGGGAATACATTGAGATTTTCTACAATCGTCAGCGTCGTCACTCTCGTCTGGGGAATATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGGCTGCTTAAAAAAAGAACAAATGGTAGTGTCCGCTATTGCCAGTACACCTCA	NA	NA	NA	NA
>prophage 149
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2214407	2332547	4576448	transposase,tail,integrase,tRNA	Enterobacteria_phage(26.32%)	110	2301596:2301655	2331341:2331805
AUU31497.1|2214407_2215490_-	porin OmpD	NA	Q1MVN1	Enterobacteria_phage	79.8	7.8e-166
AUU31498.1|2216405_2217561_+|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	3.0e-67
AUU31499.1|2219792_2220026_-	SirA-like protein	NA	NA	NA	NA	NA
AUU31500.1|2220022_2221228_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
AUU31501.1|2221414_2221828_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31502.1|2221861_2223349_-	alpha-amylase	NA	NA	NA	NA	NA
AUU31503.1|2223426_2223792_-	flagellar protein FliT	NA	NA	NA	NA	NA
AUU31504.1|2223791_2224202_-	flagella export chaperone FliS	NA	NA	NA	NA	NA
AUU31505.1|2224226_2225633_-	flagellar hook-associated protein 2	NA	NA	NA	NA	NA
AUU31506.1|2225898_2227551_+	flagellin FliC	NA	NA	NA	NA	NA
AUU31507.1|2227715_2228435_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AUU31508.1|2228480_2229032_+	flagella biosynthesis regulatory protein FliZ	NA	NA	NA	NA	NA
AUU31509.1|2229119_2229920_+	cystine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUU31510.1|2230024_2231011_+	D-cysteine desulfhydrase	NA	NA	NA	NA	NA
AUU31511.1|2231025_2231694_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUU31512.1|2231690_2232443_+	L-cystine ABC transporter ATP-binding protein YecC	NA	G9BWD6	Planktothrix_phage	41.4	6.0e-32
AUU31513.1|2232672_2233299_+	transcriptional regulator SdiA	NA	NA	NA	NA	NA
AUU31514.1|2233325_2233550_-	DUF2594 domain-containing protein	NA	NA	NA	NA	NA
AUU31515.1|2234008_2234665_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUU31516.1|2234661_2236494_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
AUU31517.1|2236550_2237099_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AUU31518.1|2237748_2238414_+	YecA family protein	NA	NA	NA	NA	NA
AUU31519.1|2238475_2239687_-	tyrosine transporter TyrP	NA	NA	NA	NA	NA
AUU31520.1|2239876_2240116_+	DUF2492 domain-containing protein	NA	NA	NA	NA	NA
AUU31521.1|2240152_2240650_-	non-heme ferritin	NA	NA	NA	NA	NA
AUU31522.1|2240820_2241144_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31523.1|2241349_2241496_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31524.1|2241607_2241859_+	DUF2766 domain-containing protein	NA	NA	NA	NA	NA
AUU31525.1|2241938_2242442_-	non-heme ferritin	NA	NA	NA	NA	NA
AUU31526.1|2243238_2244228_+	arabinose ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUU31527.1|2245098_2245470_-	DUF1311 domain-containing protein	NA	A0A2L1IV26	Escherichia_phage	81.2	1.9e-07
AUU31528.1|2245646_2247380_-|tRNA	arginine--tRNA ligase	tRNA	A0A2K9L6Z2	Tupanvirus	33.5	2.6e-86
AUU31529.1|2247595_2248162_+	VOC family protein	NA	NA	NA	NA	NA
AUU31530.1|2248175_2248922_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
AUU31531.1|2249309_2250410_+	cytochrome C	NA	NA	NA	NA	NA
AUU31532.1|2250434_2252864_+	molybdopterin guanine dinucleotide-containing S/N-oxide reductase	NA	NA	NA	NA	NA
AUU31533.1|2253028_2254000_-|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
AUU31534.1|2253996_2254740_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	NA	NA	NA	NA
AUU31535.1|2254780_2255176_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31536.1|2255228_2255579_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
AUU33558.1|2255996_2256503_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31537.1|2258325_2259494_-|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
AUU31538.1|2259768_2259957_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31539.1|2260159_2260711_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31540.1|2260712_2260991_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31541.1|2260990_2261206_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31542.1|2261202_2261490_+	HNH endonuclease	NA	NA	NA	NA	NA
AUU31543.1|2261641_2261965_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31544.1|2262437_2263142_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31545.1|2263165_2263378_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31546.1|2263532_2265599_+|tail	tail tape measure protein	tail	A0A0D4DAK9	Salmonella_phage	28.2	2.0e-61
AUU31547.1|2265772_2266546_+	hypothetical protein	NA	A0A291AY96	Shigella_phage	61.2	2.2e-77
AUU31548.1|2267398_2268672_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AUU31549.1|2269521_2269968_-	DUF72 domain-containing protein	NA	Q859D1	Escherichia_coli_phage	99.2	2.7e-72
AUU31550.1|2271375_2272531_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
AUU31551.1|2272437_2272677_+	hypothetical protein	NA	A5VW85	Enterobacteria_phage	74.2	4.0e-06
AUU31552.1|2272673_2273363_+	antiterminator	NA	I6PDF8	Cronobacter_phage	48.9	1.1e-56
AUU31553.1|2274026_2274323_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31554.1|2274548_2275745_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUU31555.1|2276008_2276410_+	DNA-packaging protein FI	NA	A0A2R9YJP4	Escherichia_phage	66.9	8.7e-38
AUU31556.1|2276421_2276793_+|tail	phage tail protein	tail	NA	NA	NA	NA
AUU31557.1|2276779_2277370_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	78.2	7.4e-78
AUU31558.1|2277776_2278517_+|tail	phage tail protein	tail	A5LH35	Enterobacteria_phage	94.3	3.5e-125
AUU31559.1|2278575_2278962_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	91.4	9.2e-61
AUU31560.1|2278970_2279300_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	98.2	3.8e-55
AUU31561.1|2282312_2282642_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	96.3	8.9e-57
AUU31562.1|2283343_2284087_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	94.7	6.8e-145
AUU31563.1|2284684_2285128_+	host specificity protein J	NA	A5LH43	Enterobacteria_phage	93.0	2.6e-59
AUU31564.1|2288229_2288829_+	Ail/Lom family protein	NA	H6WZM8	Escherichia_phage	93.0	3.6e-104
AUU31565.1|2290256_2290880_+	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	74.9	7.3e-76
AUU31566.1|2290879_2291059_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31567.1|2291059_2292811_-	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
AUU31568.1|2293427_2294701_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AUU31569.1|2294747_2294996_-	damage-inducible protein DinI	NA	K7PLW4	Enterobacteria_phage	100.0	1.8e-38
AUU31570.1|2295724_2296921_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUU31571.1|2297112_2297367_-	nicotinamidase	NA	NA	NA	NA	NA
AUU31572.1|2297676_2299449_+|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
AUU31573.1|2299566_2300019_+	NUDIX pyrophosphatase	NA	NA	NA	NA	NA
AUU31574.1|2300047_2300788_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AUU31575.1|2300822_2301344_+	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	35.1	2.0e-10
AUU31576.1|2301345_2301657_-	hypothetical protein	NA	NA	NA	NA	NA
2301596:2301655	attL	CGTAAGCGCCCCATCAGCGACGTCTTGTGAAAATTGTCCTGTCTGGCAACAATCGCGCCC	NA	NA	NA	NA
AUU31577.1|2301678_2302353_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
AUU31578.1|2302349_2302697_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	72.0	1.3e-42
AUU31579.1|2302716_2304318_+|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.5	4.9e-148
AUU33559.1|2305557_2305623_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31580.1|2305761_2306373_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AUU31581.1|2306381_2307392_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.2	2.8e-08
AUU31582.1|2307538_2308324_-	zinc ABC transporter permease	NA	NA	NA	NA	NA
AUU31583.1|2308320_2309076_-	Mn2+/Zn2+ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.3	3.8e-18
AUU33560.1|2309154_2310087_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUU31584.1|2310102_2311425_+	murein DD-endopeptidase MepM	NA	A8ATH6	Listeria_phage	40.9	1.2e-14
AUU31585.1|2311544_2312516_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA	NA
AUU31586.1|2312646_2314089_-	pyruvate kinase	NA	NA	NA	NA	NA
AUU31587.1|2314216_2315086_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AUU31588.1|2315423_2316899_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.3	9.9e-79
AUU31589.1|2317133_2318945_+	phosphogluconate dehydratase	NA	NA	NA	NA	NA
AUU31590.1|2318981_2319623_+	KHG/KDPG aldolase	NA	NA	NA	NA	NA
AUU31591.1|2319677_2320856_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AUU31592.1|2321346_2321703_+	protein YebF	NA	NA	NA	NA	NA
AUU31593.1|2322029_2322689_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AUU31594.1|2322897_2324958_+	oligopeptidase B	NA	NA	NA	NA	NA
AUU31595.1|2324954_2325617_-	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	41.6	3.5e-07
AUU31596.1|2325640_2326297_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
AUU31597.1|2326398_2326629_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	61.8	1.3e-14
AUU31598.1|2326767_2327142_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
AUU31599.1|2328030_2328372_+	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
AUU31600.1|2328764_2329841_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	51.7	5.3e-98
AUU33561.1|2329806_2330088_-	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	42.4	9.8e-12
AUU33562.1|2331423_2332035_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
2331341:2331805	attR	CGTAAGCGCCCCATCAGCGACGTCTTGTGAAAATTGTCCTGTCTGGCAACAATCGCGCCCATCTATATTGATGGACACGAACGATGAATTCCCAGACAACAAAAGATATTCCCTGCTTCCGTTCTTATTTGCCTGATGCCCTGCGTTTAAGATTTGAAGATAAACTGACCATCCGGGCCATCGCTCAGCGTCTGGGTCTCAGTCATTCCACAATACATACGCTTTTTCAGCGATTTCTTGCATCCGGTATCGCATGGCCATTGCCCGATTCAGTTTCATTCGCTCAACTTGACGCCATCCTTTATGCCAACAGAAAGAAGGAATTAACAGAGCCTCAAATCAGAGAAGGCTCATGGCGAAAAGAACGGCGAACCAGCTATAGCCGTGAATTTAAGGTCCGTCTGGCTAAGCAGGCGTTACAGCCTGGGGCTGTTGTTGCCCGGATCGCCAGAGAACACGATATCA	NA	NA	NA	NA
AUU31601.1|2331923_2332547_+	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	70.6	3.8e-72
>prophage 150
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2336933	2337107	4576448		Salmonella_phage(100.0%)	1	NA	NA
AUU31604.1|2336933_2337107_+	serine/threonine protein phosphatase	NA	S4TNS0	Salmonella_phage	55.4	8.6e-11
>prophage 151
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2344604	2346653	4576448		Moraxella_phage(100.0%)	1	NA	NA
AUU31608.1|2344604_2346653_+	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.4	5.7e-85
>prophage 152
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2351984	2352194	4576448		Morganella_phage(100.0%)	1	NA	NA
AUU31616.1|2351984_2352194_+	cold-shock protein CspC	NA	A0A1W6JNX5	Morganella_phage	78.1	1.6e-22
>prophage 153
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2358612	2360163	4576448		Moraxella_phage(100.0%)	1	NA	NA
AUU31624.1|2358612_2360163_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	44.9	1.9e-40
>prophage 154
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2364801	2373682	4576448	tRNA	Pandoravirus(33.33%)	7	NA	NA
AUU31628.1|2364801_2366163_-	aminodeoxychorismate synthase component 1	NA	S4VT78	Pandoravirus	41.7	6.4e-40
AUU31629.1|2366236_2366416_+	YoaH family protein	NA	NA	NA	NA	NA
AUU33567.1|2368031_2368376_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31630.1|2368507_2370418_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	31.7	1.7e-91
AUU31631.1|2370475_2371171_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
AUU31632.1|2371210_2371792_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33568.1|2371996_2373682_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	26.2	6.9e-36
>prophage 155
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2376912	2378342	4576448		Pseudomonas_phage(33.33%)	3	NA	NA
AUU31635.1|2376912_2377464_-	XRE family transcriptional regulator	NA	A0A076FRF7	Pseudomonas_phage	51.8	2.3e-09
AUU31636.1|2377689_2377917_+	DNA-binding protein	NA	A0A2I7S995	Vibrio_phage	47.7	1.8e-08
AUU31637.1|2377910_2378342_+	hypothetical protein	NA	C9DGL1	Escherichia_phage	53.1	7.7e-32
>prophage 156
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2388126	2389410	4576448		Bacillus_phage(100.0%)	1	NA	NA
AUU31648.1|2388126_2389410_-	hypothetical protein	NA	A0A140HLI1	Bacillus_phage	36.3	7.6e-11
>prophage 157
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2392728	2393490	4576448		Indivirus(100.0%)	1	NA	NA
AUU31651.1|2392728_2393490_+	aldo/keto reductase	NA	A0A1V0SDE7	Indivirus	26.1	2.7e-08
>prophage 158
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2402306	2406392	4576448		Staphylococcus_phage(50.0%)	4	NA	NA
AUU31659.1|2402306_2403287_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	21.5	5.1e-07
AUU31660.1|2403423_2404182_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
AUU31661.1|2404299_2405658_+	MFS transporter	NA	NA	NA	NA	NA
AUU31662.1|2405750_2406392_-	bifunctional nicotinamidase/pyrazinamidase	NA	A0A2K9L2K0	Tupanvirus	34.9	3.8e-19
>prophage 159
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2411318	2413280	4576448		Streptococcus_phage(100.0%)	1	NA	NA
AUU31669.1|2411318_2413280_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	29.0	4.1e-40
>prophage 160
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2418904	2419558	4576448		Planktothrix_phage(100.0%)	1	NA	NA
AUU31676.1|2418904_2419558_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.7	1.4e-13
>prophage 161
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2436483	2437311	4576448		Bacillus_virus(100.0%)	1	NA	NA
AUU31687.1|2436483_2437311_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	54.6	7.7e-73
>prophage 162
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2444214	2446476	4576448		Tupanvirus(100.0%)	1	NA	NA
AUU31694.1|2444214_2446476_-	catalase HPII	NA	A0A2K9L572	Tupanvirus	48.5	1.8e-143
>prophage 163
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2457125	2474938	4576448	tRNA	Tupanvirus(25.0%)	18	NA	NA
AUU31704.1|2457125_2459054_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.3	9.4e-130
AUU31705.1|2459057_2459600_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.9	8.2e-15
AUU31706.1|2459696_2459894_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
AUU31707.1|2459946_2460303_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
AUU33574.1|2460425_2460470_+|tRNA	phenylalanyl--tRNA ligase operon leader peptide	tRNA	NA	NA	NA	NA
AUU31708.1|2460752_2461736_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	1.1e-33
AUU31709.1|2461750_2464138_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AUU31710.1|2464142_2464442_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	7.2e-13
AUU31711.1|2464542_2465523_+	vitamin B12 import system permease BtuC	NA	NA	NA	NA	NA
AUU31712.1|2465585_2466137_+	glutathione peroxidase	NA	NA	NA	NA	NA
AUU31713.1|2466136_2466886_+	vitamin B12 import ATP-binding protein BtuD	NA	A0A2R8FG22	Brazilian_cedratvirus	28.2	9.3e-09
AUU31714.1|2466963_2467428_+	lipoprotein	NA	S5MM68	Bacillus_phage	36.9	1.6e-11
AUU31715.1|2468440_2469865_+	YdiU family protein	NA	NA	NA	NA	NA
AUU31716.1|2469868_2470060_-	hemin uptake protein HemP	NA	NA	NA	NA	NA
AUU31717.1|2470191_2471238_-	phospho-2-dehydro-3-deoxyheptonate aldolase Trp-sensitive	NA	S4W5F1	Pandoravirus	47.4	9.4e-84
AUU31718.1|2471394_2472228_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AUU31719.1|2472338_2472491_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31720.1|2472559_2474938_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	36.7	9.4e-172
>prophage 164
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2492078	2497162	4576448		Lake_Baikal_phage(33.33%)	5	NA	NA
AUU31734.1|2492078_2492447_+	Fe-S cluster assembly scaffold SufA	NA	A0A2H4N7N5	Lake_Baikal_phage	41.3	2.9e-16
AUU31735.1|2492455_2493943_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
AUU31736.1|2493952_2494699_+	Fe-S cluster assembly ATPase SufC	NA	A0A285PWH2	Cedratvirus	32.0	6.4e-10
AUU31737.1|2494673_2495945_+	signal peptide peptidase SppA	NA	NA	NA	NA	NA
AUU31738.1|2495941_2497162_+	cysteine desulfurase SufS	NA	Q2XUY6	environmental_halophage	41.4	9.9e-93
>prophage 165
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2505448	2506117	4576448		Escherichia_phage(100.0%)	1	NA	NA
AUU31744.1|2505448_2506117_+	4Fe-4S dicluster domain-containing protein	NA	A0A077SL61	Escherichia_phage	37.2	1.0e-22
>prophage 166
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2513995	2525236	4576448	transposase	Orpheovirus(16.67%)	11	NA	NA
AUU31751.1|2513995_2514637_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	35.2	7.4e-23
AUU31752.1|2514676_2515825_-	cyclopropane-fatty-acyl-phospholipid synthase	NA	A0A2K9L4K8	Tupanvirus	45.4	7.2e-85
AUU31753.1|2516115_2517327_-	Bcr/CflA family multidrug efflux MFS transporter	NA	NA	NA	NA	NA
AUU31754.1|2517439_2518372_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUU31755.1|2518368_2519394_-	PurR family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	31.6	3.7e-32
AUU31756.1|2519381_2519606_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31757.1|2519692_2519782_+	YnhF family membrane protein	NA	NA	NA	NA	NA
AUU31758.1|2521262_2521844_-	superoxide dismutase [Fe]	NA	Q56AR7	Bacillus_thuringiensis_phage	46.0	2.6e-43
AUU31759.1|2521971_2522799_-	endopeptidase	NA	A0A2H5BM69	Streptomyces_phage	42.7	1.7e-19
AUU31760.1|2523133_2523481_+	glutaredoxin	NA	NA	NA	NA	NA
AUU31761.1|2524027_2525236_+|transposase	transposase	transposase	A0A1W6JP07	Morganella_phage	97.6	1.3e-206
>prophage 167
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2533351	2534850	4576448		Indivirus(50.0%)	2	NA	NA
AUU31767.1|2533351_2534248_+	oxidoreductase	NA	A0A1V0SDE7	Indivirus	27.5	2.7e-07
AUU33575.1|2534328_2534850_+	superoxide dismutase [Cu-Zn] SodC2	NA	Q9MC02	Salmonella_phage	55.7	6.0e-47
>prophage 168
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2541658	2542933	4576448	tRNA	Cronobacter_phage(100.0%)	1	NA	NA
AUU31774.1|2541658_2542933_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	41.4	6.7e-84
>prophage 169
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2563502	2565314	4576448		Vaccinia_virus(100.0%)	1	NA	NA
AUU31794.1|2563502_2565314_+	beta-glucuronidase	NA	B9U1V4	Vaccinia_virus	99.5	0.0e+00
>prophage 170
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2575390	2576692	4576448		Bacillus_phage(100.0%)	1	NA	NA
AUU31801.1|2575390_2576692_-	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	23.9	9.5e-17
>prophage 171
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2587737	2645504	4576448	protease,transposase	Shigella_phage(20.0%)	54	NA	NA
AUU31814.1|2587737_2588559_-|protease	serine protease	protease	NA	NA	NA	NA
AUU31815.1|2588658_2588742_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31816.1|2588834_2589170_-	acid shock protein	NA	NA	NA	NA	NA
AUU31817.1|2589385_2590659_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AUU31818.1|2592262_2593156_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUU31819.1|2593290_2594511_+	ROK family transcriptional regulator	NA	NA	NA	NA	NA
AUU31820.1|2594635_2595331_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AUU31821.1|2595283_2596564_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA	NA
AUU31822.1|2596722_2597337_-	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	36.3	8.7e-29
AUU31823.1|2597379_2598234_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA	NA
AUU31824.1|2598235_2598853_-	dimethylsulfoxide reductase	NA	A0A077SL61	Escherichia_phage	59.6	2.1e-75
AUU31825.1|2600187_2600913_+	hypothetical protein	NA	A0A2I7QT96	Vibrio_phage	61.8	1.3e-20
AUU31826.1|2600902_2601157_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31827.1|2601159_2601381_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31828.1|2601482_2601992_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31829.1|2602066_2603056_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31830.1|2605325_2605631_-	DUF1161 domain-containing protein	NA	NA	NA	NA	NA
AUU31831.1|2605738_2606449_+	YnfC family lipoprotein	NA	NA	NA	NA	NA
AUU31832.1|2607046_2607388_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31833.1|2609768_2610629_-	carbohydrate kinase	NA	NA	NA	NA	NA
AUU31834.1|2610749_2611703_-	transcriptional regulator LsrR	NA	NA	NA	NA	NA
AUU31835.1|2613479_2614508_+	autoinducer 2 import system permease LsrC	NA	NA	NA	NA	NA
AUU31836.1|2614507_2615500_+	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA	NA
AUU31837.1|2616561_2617437_+	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA	NA
AUU31838.1|2617460_2617751_+	autoinducer 2-degrading protein LsrG	NA	NA	NA	NA	NA
AUU31839.1|2617789_2618548_+	trans-aconitate 2-methyltransferase	NA	NA	NA	NA	NA
AUU31840.1|2618551_2619466_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31841.1|2619666_2619855_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31842.1|2619864_2621064_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AUU31843.1|2621360_2622812_-	altronate oxidoreductase	NA	NA	NA	NA	NA
AUU31844.1|2622956_2623088_-	diguanylate cyclase	NA	NA	NA	NA	NA
AUU33578.1|2623038_2623986_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.5	7.3e-19
AUU31845.1|2624595_2624955_-	DUF4186 domain-containing protein	NA	NA	NA	NA	NA
AUU31846.1|2625732_2626900_+|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
AUU31847.1|2627825_2628982_-|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	8.9e-67
AUU31848.1|2629140_2629482_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31849.1|2629511_2630252_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31850.1|2630401_2631592_+	sugar efflux transporter	NA	NA	NA	NA	NA
AUU31851.1|2631616_2632282_-	stress protection protein MarC	NA	NA	NA	NA	NA
AUU31852.1|2632493_2632928_+	multiple antibiotic resistance transcriptional regulator MarR	NA	NA	NA	NA	NA
AUU31853.1|2632947_2633331_+	MDR efflux pump AcrAB transcriptional activator MarA	NA	D0R0F8	Streptococcus_phage	32.3	4.7e-09
AUU31854.1|2633362_2633581_+	multiple antibiotic resistance protein MarB	NA	NA	NA	NA	NA
AUU31855.1|2633611_2634511_-	O-acetylserine/cysteine exporter	NA	NA	NA	NA	NA
AUU31856.1|2634774_2635893_+	transporter	NA	NA	NA	NA	NA
AUU31857.1|2636019_2636115_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31858.1|2636634_2638680_-	peptidyl-dipeptidase Dcp	NA	NA	NA	NA	NA
AUU33579.1|2638586_2638805_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31859.1|2638816_2639563_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AUU31860.1|2639651_2640338_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUU31861.1|2640515_2640719_+	protein YdfZ	NA	J9Q802	Salmonella_phage	55.2	1.6e-11
AUU31862.1|2640754_2642215_-	mannitol dehydrogenase family protein	NA	H8ZJP8	Ostreococcus_tauri_virus	29.1	7.3e-42
AUU31863.1|2643020_2643932_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUU31864.1|2643931_2644294_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUU31865.1|2644307_2645504_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 172
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2655954	2682485	4576448	transposase,holin	Escherichia_phage(37.04%)	33	NA	NA
AUU31875.1|2655954_2657037_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.7	5.6e-23
AUU31876.1|2657050_2657710_-	beta-phosphoglucomutase	NA	NA	NA	NA	NA
AUU31877.1|2659293_2659659_+|transposase	transposase	transposase	NA	NA	NA	NA
AUU31878.1|2661257_2661812_-	hypothetical protein	NA	A0A0U2S606	Escherichia_phage	70.5	3.7e-71
AUU31879.1|2661808_2662099_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	89.6	3.3e-47
AUU31880.1|2662098_2662698_-	hypothetical protein	NA	A0A0U2RT94	Escherichia_phage	94.5	1.4e-108
AUU31881.1|2663546_2663798_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31882.1|2664034_2664247_-	Hok/Gef family protein	NA	A0A0U2QV81	Escherichia_phage	92.9	8.1e-27
AUU31883.1|2664644_2665010_-	DUF551 domain-containing protein	NA	Q08J61	Stx2-converting_phage	53.7	6.1e-30
AUU31884.1|2665009_2665675_-	hypothetical protein	NA	A0A076G611	Escherichia_phage	44.5	2.3e-35
AUU31885.1|2666038_2666257_-	sugar acetyltransferase inhibitor	NA	A0A1I9LJM2	Stx_converting_phage	91.7	6.8e-29
AUU31886.1|2666349_2666706_-	hypothetical protein	NA	A0A2R2Z307	Escherichia_phage	99.2	1.4e-58
AUU31887.1|2666763_2667186_-	DUF977 domain-containing protein	NA	A0A2I6TCA7	Escherichia_phage	76.6	1.0e-52
AUU31888.1|2667200_2667947_-	DNA replication protein DnaC	NA	V5UQI5	Shigella_phage	89.2	2.1e-122
AUU31889.1|2667953_2668583_-	hypothetical protein	NA	I6PDJ3	Cronobacter_phage	50.0	4.3e-15
AUU31890.1|2668740_2670013_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AUU31891.1|2670541_2671697_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
AUU31892.1|2671722_2671902_-|holin	holin	holin	A0A2R2Z340	Escherichia_phage	89.8	1.6e-23
AUU31893.1|2672051_2672213_-	hypothetical protein	NA	Q08JA2	Stx2-converting_phage	91.3	5.4e-15
AUU31894.1|2672209_2672398_-	DUF1737 domain-containing protein	NA	H6WZJ9	Escherichia_phage	95.2	7.2e-27
AUU31895.1|2672657_2672993_+	anti-adapter protein IraM	NA	Q8HAJ1	Enterobacteria_phage	74.8	5.2e-44
AUU33580.1|2673440_2673767_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31896.1|2674301_2675123_-	antitermination protein	NA	K7P7B9	Enterobacteria_phage	59.0	1.6e-78
AUU31897.1|2675137_2675494_-	hypothetical protein	NA	V5URS4	Shigella_phage	62.7	6.1e-35
AUU31898.1|2675506_2676556_-	DUF968 domain-containing protein	NA	U5P0K4	Shigella_phage	53.7	3.6e-107
AUU31899.1|2676557_2676836_-	hypothetical protein	NA	I6PCV7	Cronobacter_phage	48.4	7.4e-12
AUU31900.1|2677370_2677526_-	protein HokD	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
AUU31901.1|2677597_2677885_-	mRNA interferase RelE	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
AUU31902.1|2677884_2678124_-	antitoxin RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
AUU31903.1|2678148_2678454_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31904.1|2678450_2679607_-|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	4.0e-67
AUU31905.1|2679861_2680029_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
AUU33581.1|2681271_2682485_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	98.6	2.7e-167
>prophage 173
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2695448	2698244	4576448		Powai_lake_megavirus(100.0%)	1	NA	NA
AUU31911.1|2695448_2698244_+	insulinase family protein	NA	A0A167R9K4	Powai_lake_megavirus	23.5	1.7e-18
>prophage 174
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2703511	2707682	4576448		Bacillus_phage(50.0%)	3	NA	NA
AUU31916.1|2703511_2704657_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	41.9	1.9e-05
AUU31917.1|2705802_2706699_+	D-ala-D-ala transporter subunit	NA	NA	NA	NA	NA
AUU31918.1|2706695_2707682_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	2.2e-18
>prophage 175
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2711975	2713416	4576448		Tupanvirus(50.0%)	2	NA	NA
AUU31920.1|2711975_2712986_+	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	25.3	7.3e-25
AUU31921.1|2713131_2713416_+	addiction module antidote protein, HigA family	NA	A0A2P1MXE5	Escherichia_phage	41.6	2.7e-09
>prophage 176
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2719427	2720528	4576448		Enterobacteria_phage(100.0%)	1	NA	NA
AUU31926.1|2719427_2720528_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	64.8	3.5e-137
>prophage 177
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2728818	2795139	4576448	transposase,tRNA	Escherichia_phage(18.75%)	54	NA	NA
AUU31928.1|2728818_2729751_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	37.3	4.2e-19
AUU31929.1|2729785_2730151_+|transposase	transposase	transposase	NA	NA	NA	NA
AUU31930.1|2731052_2732654_-|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.2	1.4e-147
AUU31931.1|2732673_2733021_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	72.9	2.7e-43
AUU31932.1|2733017_2733692_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
AUU31933.1|2733697_2733922_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31934.1|2734204_2734870_-	FCD domain-containing protein	NA	NA	NA	NA	NA
AUU31935.1|2735067_2736105_-	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
AUU31936.1|2736234_2737508_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.0e-176
AUU31937.1|2737621_2738140_+	L-amino acid N-acyltransferase MnaT	NA	NA	NA	NA	NA
AUU31938.1|2738136_2738586_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33584.1|2738904_2739126_-	GhoT/OrtT family toxin	NA	NA	NA	NA	NA
AUU33585.1|2739060_2739276_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31939.1|2739272_2739368_+	stress response membrane protein YncL	NA	NA	NA	NA	NA
AUU31940.1|2739769_2740579_-	antibiotic acetyltransferase	NA	A0A2R8FE91	Brazilian_cedratvirus	41.0	5.9e-17
AUU31941.1|2742235_2743030_-	ABC transporter permease	NA	NA	NA	NA	NA
AUU31942.1|2746668_2747337_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AUU31943.1|2747639_2748233_-	tellurite resistance methyltransferase TehB	NA	NA	NA	NA	NA
AUU31944.1|2748229_2749222_-	TDT family transporter	NA	NA	NA	NA	NA
AUU31945.1|2749345_2750326_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31946.1|2750320_2750857_-	50S ribosomal protein L7/L12-serine acetyltransferase	NA	NA	NA	NA	NA
AUU31947.1|2750919_2751144_-	DUF465 domain-containing protein	NA	NA	NA	NA	NA
AUU31948.1|2751159_2751363_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31949.1|2751283_2752939_-	glucan biosynthesis protein D	NA	NA	NA	NA	NA
AUU33586.1|2754723_2755647_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUU31950.1|2758977_2760145_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	99.7	1.5e-183
AUU31951.1|2761143_2762472_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AUU31952.1|2762920_2764077_-|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	3.0e-67
AUU31953.1|2764450_2764600_+	type I toxin-antitoxin system hok family toxin	NA	NA	NA	NA	NA
AUU31954.1|2765439_2765622_-	hypothetical protein	NA	A0A0R6PKG1	Moraxella_phage	68.2	2.3e-06
AUU31955.1|2765866_2766397_-	cytochrome b561	NA	A0A0U2QLA7	Escherichia_phage	44.9	3.1e-19
AUU31956.1|2766585_2767587_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AUU31957.1|2767628_2769068_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUU31958.1|2769859_2771015_+|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	2.0e-66
AUU31959.1|2771673_2772000_-	DUF1318 domain-containing protein	NA	NA	NA	NA	NA
AUU31960.1|2772007_2772193_-	YnbE family lipoprotein	NA	NA	NA	NA	NA
AUU31961.1|2772189_2774829_-	YdbH family protein	NA	NA	NA	NA	NA
AUU31962.1|2775036_2776026_+	2-hydroxyacid dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	44.3	8.6e-71
AUU31963.1|2776469_2776736_-	DUF333 domain-containing protein	NA	NA	NA	NA	NA
AUU31964.1|2777009_2780534_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA	NA
AUU31965.1|2782170_2782605_+	universal stress protein UspF	NA	A0A1W6JNV4	Morganella_phage	52.8	1.4e-28
AUU31966.1|2782780_2783716_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	97.3	3.2e-144
AUU31967.1|2783847_2785215_-	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.1	6.2e-51
AUU31968.1|2785244_2785418_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31969.1|2785692_2786676_-	zinc transporter ZntB	NA	NA	NA	NA	NA
AUU31970.1|2788183_2788747_-	DNA endonuclease SmrA	NA	NA	NA	NA	NA
AUU33587.1|2789000_2790452_-	MFS transporter	NA	NA	NA	NA	NA
AUU31971.1|2790451_2790904_-	HlyD family secretion protein	NA	NA	NA	NA	NA
AUU31972.1|2790959_2791148_+	hypothetical protein	NA	NA	NA	NA	NA
AUU31973.1|2791157_2792357_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AUU31974.1|2792520_2793168_-	HlyD family secretion protein	NA	NA	NA	NA	NA
AUU31975.1|2793264_2794080_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUU31976.1|2794409_2794613_+	pump protein	NA	NA	NA	NA	NA
AUU31977.1|2794623_2795139_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.1	1.6e-23
>prophage 178
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2798591	2825000	4576448	transposase,holin	Stx2-converting_phage(40.0%)	21	NA	NA
AUU31980.1|2798591_2798957_+|transposase	transposase	transposase	NA	NA	NA	NA
AUU31981.1|2800819_2801851_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AUU31982.1|2801901_2803515_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUU31983.1|2804884_2805799_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUU31984.1|2805798_2806626_+	manganese/iron transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.5	4.9e-11
AUU31985.1|2806622_2807480_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AUU31986.1|2807476_2808334_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AUU31987.1|2808681_2810283_-|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.2	4.1e-147
AUU31988.1|2810302_2810650_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	72.9	2.7e-43
AUU31989.1|2810646_2811321_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
AUU31990.1|2812742_2816645_-	ATP-dependent RNA helicase HrpA	NA	A0A1V0SIV3	Klosneuvirus	29.5	8.4e-53
AUU31991.1|2816845_2817451_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
AUU31992.1|2817504_2818122_-	phosphatase	NA	NA	NA	NA	NA
AUU31993.1|2818210_2819366_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	2.0e-66
AUU31994.1|2819391_2819598_-	lysozyme	NA	A0A0N7KZA0	Stx2-converting_phage	93.9	9.9e-30
AUU31995.1|2819597_2819813_-|holin	holin	holin	M1FN85	Enterobacteria_phage	94.4	1.7e-32
AUU31996.1|2821399_2822568_-|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
AUU31997.1|2822548_2822773_-	hypothetical protein	NA	NA	NA	NA	NA
AUU31998.1|2823234_2823504_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33588.1|2823423_2823984_-	hypothetical protein	NA	A0A0N7C203	Escherichia_phage	74.4	1.1e-43
AUU31999.1|2824634_2825000_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 179
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2830453	2831719	4576448		Klosneuvirus(100.0%)	1	NA	NA
AUU32006.1|2830453_2831719_-	4-aminobutyrate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.0	3.5e-24
>prophage 180
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2844509	2850166	4576448		Bacillus_virus(50.0%)	5	NA	NA
AUU32018.1|2844509_2845316_+	peptide ABC transporter ATP-binding protein SapF	NA	G3M9Y6	Bacillus_virus	28.6	7.2e-15
AUU32019.1|2845383_2845737_+	DUF559 domain-containing protein	NA	NA	NA	NA	NA
AUU32020.1|2846104_2846893_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AUU32021.1|2847036_2848164_+	CMD domain-containing protein	NA	NA	NA	NA	NA
AUU32022.1|2848231_2850166_+	exoribonuclease 2	NA	Q0GXV6	Lactococcus_phage	27.7	5.3e-32
>prophage 181
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2858746	2859337	4576448		Staphylococcus_phage(100.0%)	1	NA	NA
AUU32031.1|2858746_2859337_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	48.9	7.7e-43
>prophage 182
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2864261	2940667	4576448	protease,transposase	Acinetobacter_phage(16.67%)	69	NA	NA
AUU32037.1|2864261_2866859_-	DNA topoisomerase I	NA	A0A2K9L1Q2	Tupanvirus	34.5	7.0e-88
AUU32038.1|2866981_2867194_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32039.1|2867238_2867490_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32040.1|2867525_2868575_-|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	31.5	1.3e-21
AUU32041.1|2868794_2869553_+	YciK family oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	23.9	2.6e-06
AUU32042.1|2869549_2870140_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
AUU32043.1|2870179_2871052_-	23S rRNA pseudouridylate synthase B	NA	NA	NA	NA	NA
AUU32044.1|2871152_2871773_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AUU32045.1|2871769_2872651_-	5'-3' exoribonuclease	NA	NA	NA	NA	NA
AUU32046.1|2872923_2874486_+	anthranilate synthase component I	NA	NA	NA	NA	NA
AUU32047.1|2874485_2876081_+	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	NA	A0A0N7IRD9	Acinetobacter_phage	38.2	1.1e-51
AUU33589.1|2876084_2877443_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	40.7	1.5e-36
AUU32048.1|2877454_2878648_+	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
AUU32049.1|2878647_2879454_+	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
AUU32050.1|2879834_2880014_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32051.1|2880099_2880600_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
AUU32052.1|2880645_2881152_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
AUU32053.1|2881211_2881850_-	outer membrane protein OmpW	NA	NA	NA	NA	NA
AUU32054.1|2882206_2882950_+	UPF0259 family protein	NA	NA	NA	NA	NA
AUU32055.1|2882979_2883519_+	septation protein A	NA	NA	NA	NA	NA
AUU32056.1|2883623_2884022_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUU32057.1|2884061_2884793_-	TonB system transport protein TonB	NA	NA	NA	NA	NA
AUU32058.1|2886203_2887372_-|transposase	transposase	transposase	Q716C2	Shigella_phage	99.7	6.8e-184
AUU32059.1|2890824_2891373_-	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	36.1	1.0e-20
AUU32060.1|2892124_2892421_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32061.1|2892468_2893625_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	5.7e-66
AUU32062.1|2893640_2893865_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32063.1|2893835_2895109_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AUU32064.1|2895323_2896577_+	voltage-gated potassium channel	NA	NA	NA	NA	NA
AUU32065.1|2896631_2896916_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32066.1|2896947_2898408_+	cardiolipin synthase A	NA	NA	NA	NA	NA
AUU32067.1|2898442_2898772_+	dsDNA-mimic protein	NA	NA	NA	NA	NA
AUU32068.1|2898824_2899829_-	oligopeptide transport ATP-binding protein OppF	NA	G9BWD6	Planktothrix_phage	35.6	8.0e-24
AUU32069.1|2899825_2900839_-	oligopeptide ABC transporter ATP-binding protein OppD	NA	G9BWD6	Planktothrix_phage	31.7	2.0e-14
AUU32070.1|2900850_2901759_-	oligopeptide ABC transporter permease OppC	NA	NA	NA	NA	NA
AUU32071.1|2901773_2902694_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUU33590.1|2902779_2904411_-	oligopeptide ABC transporter substrate-binding protein OppA	NA	NA	NA	NA	NA
AUU32072.1|2904635_2904827_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32073.1|2905148_2905796_-	MarC family protein	NA	NA	NA	NA	NA
AUU32074.1|2906272_2908948_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA	NA
AUU32075.1|2909073_2910402_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AUU32076.1|2910687_2911305_-	thymidine kinase	NA	A0A0A0YP64	Citrobacter_phage	53.6	7.8e-54
AUU32077.1|2911909_2912323_+	DNA-binding protein H-NS	NA	NA	NA	NA	NA
AUU32078.1|2912466_2913375_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	46.8	1.4e-59
AUU32079.1|2913576_2914590_-	two-component system response regulator RssB	NA	NA	NA	NA	NA
AUU32080.1|2914681_2915587_-	patatin family protein	NA	NA	NA	NA	NA
AUU32081.1|2915699_2916158_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32082.1|2916207_2917050_+	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	47.6	1.1e-13
AUU32083.1|2917833_2918511_-	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA	NA
AUU32084.1|2918510_2919221_-	nitrate reductase molybdenum cofactor assembly chaperone	NA	NA	NA	NA	NA
AUU32085.1|2919217_2920756_-	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	40.8	6.3e-20
AUU32086.1|2920752_2924496_-	nitrate reductase subunit alpha	NA	NA	NA	NA	NA
AUU32087.1|2924888_2926280_-	NarK family nitrate/nitrite MFS transporter	NA	NA	NA	NA	NA
AUU32088.1|2926374_2926593_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32089.1|2926618_2928415_+	nitrate/nitrite two-component system sensor histidine kinase NarX	NA	NA	NA	NA	NA
AUU32090.1|2928407_2929058_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUU32091.1|2929058_2930453_-	YchO family inverse autotransporter domain-containing protein	NA	NA	NA	NA	NA
AUU32092.1|2930637_2930991_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32093.1|2931034_2931730_-	glutathione-specific gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AUU32094.1|2931887_2932118_-	cation transport regulator ChaB	NA	A5IZT6	Spodoptera_litura_granulovirus	40.0	8.5e-06
AUU32095.1|2932387_2933488_+	sodium-potassium/proton antiporter ChaA	NA	NA	NA	NA	NA
AUU32096.1|2933892_2934000_+	small toxic polypeptide LdrA/LdrC	NA	NA	NA	NA	NA
AUU32097.1|2934419_2935748_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AUU32098.1|2935839_2935974_+	type I toxin-antitoxin system toxin Ldr family protein	NA	NA	NA	NA	NA
AUU32099.1|2936402_2936510_+	small toxic polypeptide LdrA/LdrC	NA	NA	NA	NA	NA
AUU32100.1|2936658_2937513_-	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	39.0	8.3e-46
AUU32101.1|2938362_2938755_-	protein sirB2	NA	NA	NA	NA	NA
AUU32102.1|2938751_2939585_-	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
AUU32103.1|2939584_2940667_-	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	41.6	1.5e-07
>prophage 183
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2943803	2946555	4576448		Tupanvirus(50.0%)	2	NA	NA
AUU33591.1|2943803_2944751_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	37.8	3.9e-44
AUU32107.1|2944875_2946555_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	23.6	1.3e-23
>prophage 184
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2965193	2965952	4576448		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
AUU32118.1|2965193_2965952_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	28.9	2.0e-14
>prophage 185
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2984000	2985688	4576448		Salmonella_phage(50.0%)	2	NA	NA
AUU32133.1|2984000_2985269_-	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	82.9	1.1e-208
AUU32134.1|2985268_2985688_-	protein UmuD	NA	A0A1W6JNS2	Morganella_phage	62.1	6.9e-38
>prophage 186
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	2989108	3045954	4576448	capsid,integrase,portal,protease,tail,head,tRNA,terminase,transposase	uncultured_Caudovirales_phage(45.83%)	63	2978761:2978776	3046943:3046958
2978761:2978776	attL	CGGCACTGGTTTCCAG	NA	NA	NA	NA
AUU32138.1|2989108_2990271_-|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	5.2e-51
AUU32139.1|2990952_2992225_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AUU32140.1|2992598_2992826_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32141.1|2992965_2993661_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AUU32142.1|2993684_2994497_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AUU32143.1|2994500_2994767_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AUU32144.1|2995138_2995582_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUU33596.1|2995597_2995783_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32145.1|2995883_2996057_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32146.1|2996058_2996403_+	glycine zipper family protein	NA	NA	NA	NA	NA
AUU32147.1|2996412_2996742_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32148.1|2996798_2999120_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	A0A2L1IV18	Escherichia_phage	43.5	7.2e-92
AUU32149.1|2999236_2999446_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32150.1|3000473_3000617_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32151.1|3002193_3003466_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AUU32152.1|3004701_3004968_-	RcsB connector protein for regulation of biofilm and acid-resistance	NA	NA	NA	NA	NA
AUU32153.1|3004996_3005269_-	two-component-system connector protein YmgA	NA	NA	NA	NA	NA
AUU32154.1|3005311_3005548_-	two-component-system connector protein YcgZ	NA	NA	NA	NA	NA
AUU32155.1|3005861_3007073_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AUU32156.1|3008229_3008634_+	DUF1398 domain-containing protein	NA	NA	NA	NA	NA
AUU32157.1|3009329_3009653_+	anti-adapter protein IraM	NA	Q8HAJ1	Enterobacteria_phage	65.4	8.8e-41
AUU32158.1|3009755_3011006_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	100.0	3.8e-23
AUU32159.1|3011177_3011831_+	23S rRNA pseudouridine synthase E	NA	NA	NA	NA	NA
AUU32160.1|3011840_3012302_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AUU32161.1|3012355_3013462_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
AUU33597.1|3013497_3014139_+	lysogenization protein HflD	NA	NA	NA	NA	NA
AUU32162.1|3014142_3015513_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	44.9	9.4e-108
AUU32163.1|3015681_3016353_+	two-component system response regulator PhoP	NA	NA	NA	NA	NA
AUU32164.1|3016352_3017813_+	Virulence sensor protein PhoQ	NA	NA	NA	NA	NA
AUU32165.1|3018609_3018891_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32166.1|3019741_3021343_-|terminase	terminase large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	82.3	1.2e-268
AUU32167.1|3021326_3021683_-|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	81.4	9.4e-52
AUU33598.1|3021805_3021979_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32168.1|3021971_3022412_-	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	72.6	2.5e-62
AUU32169.1|3022411_3022708_-	hypothetical protein	NA	A0A2H4JD08	uncultured_Caudovirales_phage	62.2	2.2e-30
AUU32170.1|3022704_3023043_-|head,tail	head-tail adaptor protein	head,tail	A0A2H4JHK5	uncultured_Caudovirales_phage	52.7	1.7e-31
AUU32171.1|3023039_3024251_-|portal	phage portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	79.0	1.8e-187
AUU32172.1|3024252_3024825_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	63.0	2.3e-60
AUU32173.1|3024864_3026022_-|capsid	phage major capsid protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	64.6	6.2e-137
AUU32174.1|3026324_3026486_-	PerC family transcriptional regulator	NA	NA	NA	NA	NA
AUU32175.1|3026495_3026801_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32176.1|3026797_3027076_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32177.1|3027355_3029104_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	39.3	7.3e-89
AUU32178.1|3029100_3029400_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32179.1|3029405_3029639_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32180.1|3029853_3030075_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32181.1|3030064_3030265_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA	NA
AUU32182.1|3030273_3031020_-	hypothetical protein	NA	A0A2H4JGN8	uncultured_Caudovirales_phage	51.0	1.4e-12
AUU32183.1|3031077_3031266_-	AlpA family transcriptional regulator	NA	A0A2H4JB58	uncultured_Caudovirales_phage	64.2	5.9e-13
AUU32184.1|3031640_3032870_-|integrase	integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	55.9	6.4e-132
AUU32185.1|3033118_3034240_+	50S ribosomal protein L16 arginine hydroxylase	NA	NA	NA	NA	NA
AUU32186.1|3034288_3035515_-	peptidase T	NA	NA	NA	NA	NA
AUU33599.1|3035570_3035786_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32187.1|3035764_3036901_+	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	39.8	5.5e-29
AUU32188.1|3036884_3037742_+	spermidine/putrescine ABC transporter permease PotB	NA	Q6GZ02	Mycoplasma_phage	28.7	6.7e-11
AUU32189.1|3037738_3038533_+	spermidine/putrescine ABC transporter permease	NA	NA	NA	NA	NA
AUU32190.1|3038529_3039576_+	spermidine/putrescine ABC transporter substrate-binding protein PotD	NA	NA	NA	NA	NA
AUU32191.1|3039731_3040553_-	NAD-dependent deacylase	NA	A0A2I7S9Y2	Vibrio_phage	35.6	4.3e-23
AUU32192.1|3040568_3041480_-	N-acetylglucosamine kinase	NA	NA	NA	NA	NA
AUU32193.1|3041508_3042753_-	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA	NA
AUU32194.1|3042752_3043454_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	40.3	1.9e-35
AUU32195.1|3043446_3044646_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AUU32196.1|3044907_3045954_+	hypothetical protein	NA	A0A142KBN9	Gordonia_phage	23.7	4.2e-07
3046943:3046958	attR	CTGGAAACCAGTGCCG	NA	NA	NA	NA
>prophage 187
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3050715	3050973	4576448		Erwinia_phage(100.0%)	1	NA	NA
AUU32198.1|3050715_3050973_-	DUF1471 domain-containing protein	NA	A0A1B2IFR9	Erwinia_phage	37.1	7.3e-06
>prophage 188
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3063298	3064941	4576448		Streptococcus_virus(50.0%)	2	NA	NA
AUU32210.1|3063298_3064303_-	DNA polymerase III subunit delta'	NA	A0A1U9WR94	Streptococcus_virus	30.9	8.4e-05
AUU32211.1|3064299_3064941_-	thymidylate kinase	NA	Q2Z0N0	Pseudomonas_phage	36.9	4.5e-28
>prophage 189
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3068212	3069394	4576448		Ralstonia_phage(50.0%)	2	NA	NA
AUU32215.1|3068212_3068449_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	45.2	1.5e-10
AUU32216.1|3068659_3069394_-	beta-ketoacyl-ACP reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	34.1	1.3e-15
>prophage 190
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3081751	3082693	4576448		Brevibacillus_phage(100.0%)	1	NA	NA
AUU32227.1|3081751_3082693_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	S5M633	Brevibacillus_phage	30.6	1.1e-09
>prophage 191
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3098294	3098540	4576448		Salmonella_phage(100.0%)	1	NA	NA
AUU32245.1|3098294_3098540_+	DNA-damage-inducible protein I	NA	H6WRY5	Salmonella_phage	48.7	7.7e-13
>prophage 192
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3103202	3150062	4576448	transposase	Stx2-converting_phage(25.0%)	54	NA	NA
AUU32252.1|3103202_3104123_+	lipid A biosynthesis lauroyl acyltransferase	NA	A0A1W6JP29	Morganella_phage	41.5	8.6e-57
AUU32253.1|3104294_3104492_+	multidrug transporter	NA	NA	NA	NA	NA
AUU32254.1|3104515_3105652_+	recombinase family protein	NA	NA	NA	NA	NA
AUU32255.1|3105703_3106916_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	99.0	4.2e-168
AUU32256.1|3106962_3107259_+|transposase	transposase	transposase	NA	NA	NA	NA
AUU32257.1|3108861_3111405_-	glucans biosynthesis glucosyltransferase MdoH	NA	NA	NA	NA	NA
AUU33601.1|3111397_3112933_-	glucans biosynthesis protein MdoG	NA	NA	NA	NA	NA
AUU32258.1|3113003_3113135_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32259.1|3113138_3113282_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32260.1|3113326_3114484_+	glucan biosynthesis protein C	NA	NA	NA	NA	NA
AUU32261.1|3114491_3115748_-	phospholipase D family protein	NA	NA	NA	NA	NA
AUU32262.1|3115914_3116448_-	O-acetyl-ADP-ribose deacetylase	NA	Q71G61	Red_sea_bream_iridovirus	40.2	5.9e-26
AUU32263.1|3116974_3117307_-	curli assembly protein CsgC	NA	NA	NA	NA	NA
AUU32264.1|3117365_3117731_-	major curlin subunit CsgA	NA	NA	NA	NA	NA
AUU32265.1|3117757_3118914_-|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.8e-67
AUU32266.1|3119127_3119583_-	curlin minor subunit CsgB	NA	NA	NA	NA	NA
AUU32267.1|3119685_3119925_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32268.1|3120336_3120987_+	transcriptional regulator CsgD	NA	NA	NA	NA	NA
AUU32269.1|3120991_3121381_+	curli production assembly/transport component CsgE	NA	NA	NA	NA	NA
AUU33602.1|3123464_3123956_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32270.1|3124057_3124612_-	molecular chaperone	NA	NA	NA	NA	NA
AUU32271.1|3124635_3125373_-	phosphatase	NA	NA	NA	NA	NA
AUU32272.1|3127399_3128404_-|transposase	IS110 family transposase ISSfl8	transposase	NA	NA	NA	NA
AUU33603.1|3128472_3129036_-	DUF4942 domain-containing protein	NA	NA	NA	NA	NA
AUU32273.1|3129120_3129318_-	DUF957 domain-containing protein	NA	NA	NA	NA	NA
AUU33604.1|3129329_3129818_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32274.1|3129817_3130192_-	toxin	NA	NA	NA	NA	NA
AUU32275.1|3130238_3130613_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA	NA
AUU32276.1|3130775_3130997_-	DUF987 domain-containing protein	NA	A0A142F0X9	Klebsiella_phage	44.4	3.2e-10
AUU33605.1|3131059_3131506_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32277.1|3131551_3132406_-	antirestriction protein	NA	A9J566	Pseudomonas_phage	30.5	3.5e-12
AUU32278.1|3132366_3133185_-	DUF945 domain-containing protein	NA	A0A2C9CX26	Yersinia_phage	39.3	4.7e-46
AUU32279.1|3133205_3133340_-	cytoplasmic protein	NA	NA	NA	NA	NA
AUU32280.1|3133339_3133534_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32281.1|3133568_3136415_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AUU32282.1|3136786_3137659_-	50S ribosome-binding GTPase	NA	NA	NA	NA	NA
AUU32283.1|3137743_3138661_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32284.1|3138793_3139009_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32285.1|3139492_3139690_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32286.1|3139860_3140478_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32287.1|3140557_3140959_-	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
AUU32288.1|3140904_3141171_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32289.1|3141374_3142647_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AUU32290.1|3142843_3142984_+	hemolysin activation protein	NA	NA	NA	NA	NA
AUU32291.1|3143329_3143530_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32292.1|3143692_3144298_+	inovirus Gp2 family protein	NA	NA	NA	NA	NA
AUU32293.1|3144551_3144959_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32294.1|3144859_3145381_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32295.1|3145380_3145617_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33606.1|3145735_3146116_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBP6	Stx2-converting_phage	99.2	7.1e-66
AUU32296.1|3146112_3146460_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	98.3	1.4e-60
AUU32297.1|3146509_3147895_+|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	89.1	1.0e-258
AUU32298.1|3148133_3149507_-	esterase-like activity of phytase	NA	NA	NA	NA	NA
AUU32299.1|3149870_3150062_+	hypothetical protein	NA	A0A0N7BTS3	Escherichia_phage	96.2	2.4e-06
>prophage 193
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3157220	3158945	4576448		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
AUU32306.1|3157220_3158177_+	iron-dicitrate transporter subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
AUU32307.1|3158177_3158945_+	Fe(3+) dicitrate transport ATP-binding protein FecE	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
>prophage 194
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3163479	3211946	4576448	transposase,integrase	Enterobacteria_phage(25.0%)	46	3170997:3171011	3179952:3179966
AUU32310.1|3163479_3164607_+|transposase	IS4 family transposase	transposase	Q9E8P4	Bluetongue_virus	99.7	3.1e-218
AUU32311.1|3165045_3165714_+	putative tetracyline resistance transcriptional regulator TetC	NA	NA	NA	NA	NA
AUU32312.1|3165826_3167032_-	tetracycline efflux MFS transporter Tet(B)	NA	A0A2H4UVM2	Bodo_saltans_virus	24.4	3.0e-09
AUU32313.1|3167110_3167737_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUU32314.1|3167714_3168401_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUU32315.1|3168408_3168795_-	amino acid-binding protein	NA	NA	NA	NA	NA
AUU32316.1|3168787_3169051_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AUU32317.1|3169778_3169970_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32318.1|3170023_3170683_+	type A-1 chloramphenicol O-acetyltransferase	NA	G3CFL0	Escherichia_phage	100.0	8.4e-131
AUU32319.1|3170883_3171261_-	N-acetyltransferase	NA	NA	NA	NA	NA
3170997:3171011	attL	ATTTTTCAGCGTTCC	NA	NA	NA	NA
AUU32320.1|3171327_3174294_-|transposase	Tn3-like element TnAs3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.5	0.0e+00
AUU32321.1|3174296_3174857_-	DNA resolvase	NA	A0A1B0V7I5	Salmonella_phage	86.2	4.0e-49
AUU32322.1|3174982_3175597_-	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
AUU32323.1|3175535_3176549_-|integrase	integron integrase	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
AUU33607.1|3176758_3177589_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA	NA
AUU32324.1|3177701_3178493_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA	NA
AUU32325.1|3180368_3181667_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
3179952:3179966	attR	GGAACGCTGAAAAAT	NA	NA	NA	NA
AUU32326.1|3181732_3182452_-	aspartate racemase	NA	NA	NA	NA	NA
AUU32327.1|3182796_3183741_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUU32328.1|3184383_3185539_+|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	3.0e-67
AUU32329.1|3186869_3187211_-	inovirus Gp2 family protein	NA	NA	NA	NA	NA
AUU32330.1|3188004_3188211_-	helicase	NA	NA	NA	NA	NA
AUU32331.1|3188317_3188881_-	inovirus Gp2 family protein	NA	NA	NA	NA	NA
AUU32332.1|3190255_3192091_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32333.1|3192191_3192479_+	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
AUU32334.1|3192450_3193980_+	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
AUU32335.1|3194149_3195367_-	DUF4102 domain-containing protein	NA	A0A1B0VMI6	Pseudomonas_phage	34.4	1.7e-44
AUU32336.1|3195733_3196720_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32337.1|3196716_3196899_-	hemolysin activation protein	NA	NA	NA	NA	NA
AUU32338.1|3196917_3197283_+|transposase	transposase	transposase	NA	NA	NA	NA
AUU32339.1|3198762_3199401_-	transcriptional regulator	NA	NA	NA	NA	NA
AUU32340.1|3199631_3200780_+	pyrimidine utilization protein A	NA	NA	NA	NA	NA
AUU33608.1|3200779_3201472_+	pyrimidine utilization protein B	NA	NA	NA	NA	NA
AUU32341.1|3201483_3201870_+	pyrimidine utilization protein C	NA	NA	NA	NA	NA
AUU32342.1|3201877_3202678_+	pyrimidine utilization protein D	NA	NA	NA	NA	NA
AUU32343.1|3202687_3203278_+	malonic semialdehyde reductase	NA	NA	NA	NA	NA
AUU32344.1|3203288_3203783_+	FMN reductase	NA	Q9KX93	Enterobacteria_phage	96.9	1.1e-50
AUU32345.1|3203803_3205132_+	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	98.6	4.1e-233
AUU32346.1|3205213_3205321_-	hypothetical protein	NA	Q9KX95	Enterobacteria_phage	100.0	3.4e-10
AUU32347.1|3205693_3206290_+	NAD(P)H dehydrogenase (quinone)	NA	NA	NA	NA	NA
AUU32348.1|3206310_3206538_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32349.1|3206575_3207817_-	bifunctional glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA	NA
AUU32350.1|3208109_3209366_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32351.1|3209626_3210547_+	curved DNA-binding protein	NA	A0A1V0SIM1	Klosneuvirus	43.0	4.2e-11
AUU32352.1|3210546_3210852_+	chaperone modulatory protein CbpM	NA	NA	NA	NA	NA
AUU32353.1|3211580_3211946_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 195
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3217556	3359126	4576448	protease,transposase,holin,tRNA	Stx2-converting_phage(23.08%)	115	NA	NA
AUU32356.1|3217556_3218713_-|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	3.0e-67
AUU32357.1|3219681_3220029_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	72.9	2.7e-43
AUU32358.1|3220025_3220700_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
AUU32359.1|3221062_3221254_+	protein ninH	NA	A0A088CC23	Shigella_phage	73.3	4.3e-19
AUU32360.1|3222942_3223239_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32361.1|3223448_3223664_+|holin	holin	holin	M1FN85	Enterobacteria_phage	90.1	9.4e-31
AUU32362.1|3223663_3224161_+	lysozyme	NA	A0A0N7KZA0	Stx2-converting_phage	97.0	3.2e-90
AUU32363.1|3224157_3224388_+	endopeptidase	NA	H6WZK2	Escherichia_phage	93.4	5.0e-30
AUU32364.1|3224393_3225562_-|transposase	transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
AUU32365.1|3225656_3227258_-|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.2	4.1e-147
AUU32366.1|3227277_3227625_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	72.9	2.7e-43
AUU32367.1|3227621_3228296_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
AUU32368.1|3228379_3228610_+	tyrosine-protein kinase	NA	NA	NA	NA	NA
AUU33609.1|3228724_3230023_-	phytase AppA	NA	NA	NA	NA	NA
AUU32369.1|3230102_3230195_-	cytochrome bd-II oxidase subunit CbdX	NA	NA	NA	NA	NA
AUU32370.1|3230206_3231343_-	cytochrome bd-II ubiquinol oxidase subunit 2	NA	NA	NA	NA	NA
AUU32371.1|3231354_3232899_-	cytochrome bd-II ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUU32372.1|3233032_3233890_-	hydrogenase expression/formation protein	NA	NA	NA	NA	NA
AUU32373.1|3233886_3234285_-	hydrogenase-1 operon protein HyaE	NA	NA	NA	NA	NA
AUU32374.1|3234281_3234869_-	HyaD/HybD family hydrogenase maturation endopeptidase	NA	NA	NA	NA	NA
AUU32375.1|3236787_3237906_-	[Ni/Fe] hydrogenase small subunit	NA	NA	NA	NA	NA
AUU32376.1|3238625_3239285_+	BAX inhibitor protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	55.3	4.0e-48
AUU32377.1|3239375_3239705_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
AUU32378.1|3239701_3239980_-	acylphosphatase	NA	NA	NA	NA	NA
AUU32379.1|3240074_3241265_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
AUU32380.1|3241322_3241640_+	heat-shock protein HspQ	NA	NA	NA	NA	NA
AUU32381.1|3241684_3242098_-	CoA-binding protein	NA	NA	NA	NA	NA
AUU32382.1|3242270_3242933_+	DUF2057 domain-containing protein	NA	NA	NA	NA	NA
AUU32383.1|3243028_3243487_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AUU32384.1|3243518_3245573_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.9	1.0e-20
AUU32385.1|3245695_3246142_+	YccF domain-containing protein	NA	NA	NA	NA	NA
AUU32386.1|3246160_3248314_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
AUU32387.1|3248276_3248906_-	protein Sxy	NA	NA	NA	NA	NA
AUU32388.1|3249124_3249634_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
AUU33610.1|3249989_3251036_+	porin OmpA	NA	NA	NA	NA	NA
AUU32389.1|3251111_3251564_-	macrodomain Ter protein	NA	NA	NA	NA	NA
AUU32390.1|3251748_3253509_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
AUU33611.1|3253577_3254096_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
AUU32391.1|3254165_3254333_-	ribosome modulation factor	NA	NA	NA	NA	NA
AUU32392.1|3254588_3255152_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32393.1|3255148_3256789_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
AUU32394.1|3256793_3258047_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
AUU32395.1|3260095_3262204_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
AUU32396.1|3262447_3263557_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AUU32397.1|3263553_3264096_-	cell division protein ZapC	NA	NA	NA	NA	NA
AUU32398.1|3264269_3265280_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AUU32399.1|3265390_3266101_-	pili assembly chaperone	NA	NA	NA	NA	NA
AUU32400.1|3266093_3266609_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
AUU32401.1|3266616_3267159_-	fimbrial protein	NA	NA	NA	NA	NA
AUU32402.1|3267170_3268241_-	fimbrial protein	NA	NA	NA	NA	NA
AUU32403.1|3272322_3272784_+	fimbrial protein	NA	NA	NA	NA	NA
AUU32404.1|3273373_3273694_+|transposase	transposase	transposase	NA	NA	NA	NA
AUU32405.1|3273612_3274188_+	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
AUU32406.1|3274180_3275140_+	aliphatic sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUU32407.1|3275136_3276282_+	alkanesulfonate monooxygenase, FMNH(2)-dependent	NA	NA	NA	NA	NA
AUU33612.1|3276293_3276941_+	taurine ABC transporter permease	NA	NA	NA	NA	NA
AUU32408.1|3276937_3277705_+	aliphatic sulfonates ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.6	2.2e-29
AUU32409.1|3277911_3280524_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	9.1e-19
AUU32410.1|3280789_3281992_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
AUU32411.1|3282160_3283561_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	36.1	5.3e-82
AUU32412.1|3284162_3285251_+	porin	NA	Q1MVN1	Enterobacteria_phage	54.3	2.4e-98
AUU32413.1|3285266_3285449_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32414.1|3285435_3286626_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AUU32415.1|3286869_3287496_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AUU33613.1|3287522_3288071_-	DUF882 domain-containing protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	7.0e-06
AUU32416.1|3288251_3290099_-	L,D-transpeptidase	NA	NA	NA	NA	NA
AUU32417.1|3290306_3291635_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AUU32418.1|3291797_3296258_-	chromosome partition protein MukB	NA	NA	NA	NA	NA
AUU32419.1|3296257_3296962_-	chromosome partition protein MukE	NA	NA	NA	NA	NA
AUU32420.1|3296942_3298265_-	chromosome partition protein MukF	NA	NA	NA	NA	NA
AUU32421.1|3298261_3299047_-|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
AUU32422.1|3299182_3299962_+	envelope biogenesis factor ElyC	NA	NA	NA	NA	NA
AUU32423.1|3299938_3300832_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32424.1|3300985_3301732_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AUU32425.1|3301728_3301911_-	protein YcaR	NA	NA	NA	NA	NA
AUU32426.1|3301962_3303195_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AUU32427.1|3303231_3304218_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AUU32428.1|3304214_3305963_-	lipid A export ATP-binding/permease MsbA	NA	W8CYL7	Bacillus_phage	29.8	3.3e-57
AUU32429.1|3308425_3308710_-	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	40.2	3.2e-10
AUU32430.1|3308869_3310543_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AUU32431.1|3310653_3311337_-	cytidylate kinase	NA	NA	NA	NA	NA
AUU32432.1|3311509_3312274_-|protease	metalloprotease	protease	NA	NA	NA	NA
AUU32433.1|3312409_3313738_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AUU32434.1|3313881_3315165_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AUU32435.1|3315235_3316324_-	3-phosphoserine/phosphohydroxythreonine aminotransferase	NA	M1Q1P2	Streptococcus_phage	46.8	3.5e-81
AUU33614.1|3317280_3319041_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
AUU32436.1|3319446_3320304_+	formate transporter FocA	NA	NA	NA	NA	NA
AUU32437.1|3320358_3322641_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	41.2	4.9e-162
AUU32438.1|3322832_3323573_+	pyruvate formate lyase-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	26.5	8.0e-21
AUU32439.1|3324313_3325586_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	98.7	2.0e-176
AUU33615.1|3326019_3326664_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUU32440.1|3327117_3328273_+|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	5.2e-67
AUU33616.1|3328270_3329311_-	amino acid permease	NA	NA	NA	NA	NA
AUU32441.1|3329381_3330983_-|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.2	4.1e-147
AUU32442.1|3331002_3331350_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	72.9	2.7e-43
AUU32443.1|3331346_3332021_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	7.6e-10
AUU32444.1|3332350_3333499_-	MFS transporter	NA	NA	NA	NA	NA
AUU32445.1|3333813_3334440_+	hydrolase	NA	NA	NA	NA	NA
AUU32446.1|3334475_3335390_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA	NA
AUU32447.1|3335319_3335946_-	dimethylsulfoxide reductase, chain B	NA	A0A077SL61	Escherichia_phage	60.4	1.5e-76
AUU32448.1|3338640_3339933_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
AUU32449.1|3340023_3341367_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	41.0	4.3e-81
AUU32450.1|3341377_3341989_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AUU32451.1|3342143_3346250_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
AUU32452.1|3346384_3346879_-	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
AUU32453.1|3347423_3348389_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.3	3.2e-62
AUU32454.1|3348511_3350278_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	24.0	4.6e-22
AUU32455.1|3350278_3352000_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	25.6	4.4e-22
AUU32456.1|3352041_3352746_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
AUU32457.1|3353030_3353249_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AUU33617.1|3353672_3353876_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32458.1|3353932_3356209_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.5	1.9e-166
AUU32459.1|3356239_3356560_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
AUU32460.1|3356882_3357107_+	cold-shock protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	2.3e-16
AUU32461.1|3357179_3359126_-	macrolide ABC transporter permease/ATP-binding protein MacB	NA	G9BWD6	Planktothrix_phage	40.1	1.5e-37
>prophage 196
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3368384	3370103	4576448		Yellowstone_lake_phycodnavirus(100.0%)	1	NA	NA
AUU32470.1|3368384_3370103_+	ubiquinone-dependent pyruvate dehydrogenase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	1.8e-31
>prophage 197
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3373690	3374521	4576448		Roseobacter_phage(100.0%)	1	NA	NA
AUU32473.1|3373690_3374521_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	30.0	3.3e-07
>prophage 198
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3378202	3378931	4576448		Planktothrix_phage(100.0%)	1	NA	NA
AUU32478.1|3378202_3378931_+	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	36.7	6.0e-29
>prophage 199
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3382268	3391419	4576448		Streptococcus_phage(25.0%)	11	NA	NA
AUU32483.1|3382268_3383396_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	A0A1X9I6F4	Streptococcus_phage	27.6	3.5e-28
AUU32484.1|3383436_3383925_-	DUF2593 domain-containing protein	NA	NA	NA	NA	NA
AUU32485.1|3383984_3384830_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA	NA
AUU32486.1|3384826_3385780_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA	NA
AUU32487.1|3385846_3386923_-	polyamine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.0	2.3e-29
AUU32488.1|3387017_3388130_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA	NA
AUU32489.1|3388481_3388958_-	YbjN domain-containing protein	NA	NA	NA	NA	NA
AUU32490.1|3389045_3389948_-	30S ribosomal protein S6--L-glutamate ligase	NA	I3ULC9	Synechococcus_phage	34.4	4.4e-37
AUU32491.1|3390008_3390731_-	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA	NA
AUU32492.1|3390714_3391002_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32493.1|3391161_3391419_+	glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	61.9	8.6e-23
>prophage 200
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3400264	3402282	4576448	transposase	Acinetobacter_phage(50.0%)	2	NA	NA
AUU32502.1|3400264_3401421_-|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
AUU33619.1|3401472_3402282_-	peptidase M15	NA	B6DZZ7	Stx2-converting_phage	54.1	1.1e-74
>prophage 201
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3413616	3415488	4576448		Planktothrix_phage(100.0%)	1	NA	NA
AUU32511.1|3413616_3415488_-	glutathione import ATP-binding protein GsiA	NA	G9BWD6	Planktothrix_phage	30.3	3.6e-17
>prophage 202
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3418806	3427148	4576448		Synechococcus_phage(33.33%)	6	NA	NA
AUU32515.1|3418806_3419469_-	fructose-6-phosphate aldolase 1	NA	A0A0E3HJ81	Synechococcus_phage	33.6	2.8e-25
AUU32516.1|3419599_3420499_+	glycyl-radical enzyme activating protein	NA	NA	NA	NA	NA
AUU32517.1|3420504_3422937_+	formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme	NA	A0A076YHZ7	Citrobacter_phage	43.5	6.1e-09
AUU32518.1|3423082_3423898_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
AUU32519.1|3424049_3425315_+	DUF1479 domain-containing protein	NA	NA	NA	NA	NA
AUU32520.1|3425555_3427148_-	ABC-F family ATPase	NA	A0A2K9L0W2	Tupanvirus	28.7	3.1e-62
>prophage 203
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3432143	3437368	4576448		Escherichia_phage(33.33%)	6	NA	NA
AUU32526.1|3432143_3432659_-	outer membrane protein OmpX	NA	H6WZM8	Escherichia_phage	33.8	6.4e-17
AUU32527.1|3433011_3433899_+	threonine/homoserine exporter RhtA	NA	NA	NA	NA	NA
AUU32528.1|3434197_3434701_+	DNA starvation/stationary phase protection protein	NA	A0A222YYG6	Streptomyces_phage	29.0	4.9e-06
AUU32529.1|3435104_3435851_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AUU32530.1|3435989_3436649_+	glutamine ABC transporter permease	NA	NA	NA	NA	NA
AUU32531.1|3436645_3437368_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.2e-34
>prophage 204
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3440907	3441312	4576448		Erwinia_phage(100.0%)	1	NA	NA
AUU32533.1|3440907_3441312_+	DUF1471 domain-containing protein	NA	A0A1B2ICL8	Erwinia_phage	51.0	2.6e-05
>prophage 205
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3445338	3451476	4576448		Synechococcus_phage(33.33%)	6	NA	NA
AUU32535.1|3445338_3446016_+	PKHD-type hydroxylase	NA	Q5GQB0	Synechococcus_phage	29.7	3.4e-18
AUU32536.1|3446089_3446329_+	DksA/TraR family C4-type zinc finger protein	NA	E5G6L7	Salmonella_phage	45.6	2.8e-07
AUU32537.1|3446620_3446881_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
AUU32538.1|3447109_3448195_-	malate/lactate/ureidoglycolate dehydrogenase	NA	NA	NA	NA	NA
AUU32539.1|3448335_3449298_-	DNA-binding protein YbiB	NA	NA	NA	NA	NA
AUU32540.1|3449325_3451476_-	ATP-dependent DNA helicase DinG	NA	A0A127AW80	Bacillus_phage	25.6	2.4e-41
>prophage 206
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3455362	3457099	4576448		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
AUU32542.1|3455362_3457099_+	multidrug ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.8	2.3e-18
>prophage 207
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3468210	3469119	4576448		Streptococcus_phage(100.0%)	1	NA	NA
AUU32555.1|3468210_3469119_+	hypothetical protein	NA	A1IMD5	Streptococcus_phage	31.1	1.4e-27
>prophage 208
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3475600	3548496	4576448	transposase,tail,tRNA	Shigella_phage(31.03%)	67	NA	NA
AUU32561.1|3475600_3476890_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.6	6.5e-18
AUU32562.1|3476867_3477338_+	kinase inhibitor	NA	NA	NA	NA	NA
AUU32563.1|3477252_3477432_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32564.1|3477891_3478893_+	acyltransferase	NA	Q716G0	Shigella_phage	100.0	6.3e-186
AUU32565.1|3478926_3480516_-	endorhamnosidase	NA	Q716G1	Shigella_phage	98.5	4.9e-302
AUU32566.1|3480553_3481766_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	99.0	4.2e-168
AUU32567.1|3481769_3482111_-|tail	phage tail protein	tail	A0A088CQ58	Enterobacteria_phage	96.0	5.4e-49
AUU32568.1|3482242_3484084_-	DNA transfer protein	NA	A0A192Y934	Salmonella_phage	74.2	4.5e-246
AUU32569.1|3484083_3485490_-	acyltransferase	NA	I6RSG0	Salmonella_phage	56.3	2.4e-130
AUU32570.1|3487529_3489293_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
AUU32571.1|3489293_3489473_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32572.1|3489472_3490096_-	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	77.5	2.9e-80
AUU32573.1|3491524_3492124_-	Ail/Lom family protein	NA	H6WZM8	Escherichia_phage	93.0	3.6e-104
AUU32574.1|3496269_3497013_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	94.7	6.8e-145
AUU32575.1|3497017_3497716_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	89.2	1.9e-120
AUU32576.1|3497715_3498045_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	96.3	8.9e-57
AUU32577.1|3498794_3499951_-|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	3.0e-67
AUU32578.1|3500309_3501478_-|transposase	transposase	transposase	Q716C2	Shigella_phage	99.3	2.6e-183
AUU32579.1|3501534_3501672_-	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
AUU32580.1|3502727_3503874_+|transposase	transposase	transposase	U5P429	Shigella_phage	92.6	2.3e-147
AUU32581.1|3504243_3505146_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUU33622.1|3505355_3506102_-	thiol:disulfide interchange protein DsbG	NA	NA	NA	NA	NA
AUU32582.1|3506473_3507037_+	peroxiredoxin	NA	NA	NA	NA	NA
AUU32583.1|3507281_3508847_+	alkyl hydroperoxide reductase subunit F	NA	G3MA85	Bacillus_virus	34.6	7.6e-45
AUU32584.1|3508967_3509396_-	universal stress protein UspG	NA	A0A1W6JNV4	Morganella_phage	39.2	1.9e-19
AUU32585.1|3510857_3511046_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32586.1|3511084_3511495_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA	NA
AUU33623.1|3511482_3511668_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32587.1|3511723_3512530_-	ribonuclease I	NA	NA	NA	NA	NA
AUU32588.1|3512643_3514107_-	anion permease	NA	NA	NA	NA	NA
AUU32589.1|3514157_3515036_-	triphosphoribosyl-dephospho-CoA synthase	NA	NA	NA	NA	NA
AUU32590.1|3515010_3515562_-	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA	NA
AUU32591.1|3515565_3517098_-	citrate lyase subunit alpha	NA	NA	NA	NA	NA
AUU32592.1|3517108_3518017_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
AUU32593.1|3518013_3518310_-	citrate lyase ACP	NA	NA	NA	NA	NA
AUU32594.1|3518324_3519383_-	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA	NA
AUU32595.1|3521848_3522544_-	protein mom	NA	A0A0C4UQZ7	Shigella_phage	98.3	5.2e-131
AUU32596.1|3522494_3522683_-	Com family DNA-binding transcriptional regulator	NA	A0A0C4UQS3	Shigella_phage	98.4	3.7e-31
AUU32597.1|3522776_3522974_-	recombinase family protein	NA	A0A0C4UR34	Shigella_phage	100.0	2.0e-24
AUU32598.1|3523089_3523824_+|tail	phage tail protein	tail	A0A0C4UQV0	Shigella_phage	91.4	1.2e-130
AUU32599.1|3524831_3525359_+|tail	tail fiber assembly protein	tail	A0A0A7NRZ7	Enterobacteria_phage	92.6	7.1e-88
AUU32600.1|3525387_3525921_-|tail	tail fiber assembly protein	tail	A0A0C4UQZ5	Shigella_phage	97.7	3.5e-95
AUU32601.1|3526420_3527577_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
AUU32602.1|3528297_3529683_-	anaerobic C4-dicarboxylate transporter DcuC	NA	NA	NA	NA	NA
AUU32603.1|3529726_3529828_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUU32604.1|3530267_3530828_+	phospholipid:lipid A palmitoyltransferase	NA	NA	NA	NA	NA
AUU32605.1|3531002_3531212_+	cold-shock protein CspE	NA	A0A1W6JNX5	Morganella_phage	78.1	2.7e-22
AUU32606.1|3531265_3531649_-	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	53.6	6.8e-24
AUU32607.1|3531741_3532530_+	amidase	NA	NA	NA	NA	NA
AUU32608.1|3532658_3532862_+	twin-arginine translocase subunit TatA	NA	NA	NA	NA	NA
AUU32609.1|3532962_3533928_-	lipoyl synthase	NA	NA	NA	NA	NA
AUU32610.1|3534026_3534140_-	DNA-binding protein	NA	NA	NA	NA	NA
AUU32611.1|3534136_3535090_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUU32612.1|3535147_3535297_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32613.1|3535348_3535990_-	octanoyltransferase	NA	NA	NA	NA	NA
AUU32614.1|3536090_3536354_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32615.1|3536464_3537676_-	serine-type D-Ala-D-Ala carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	47.2	7.5e-101
AUU32616.1|3537814_3538903_-	endolytic peptidoglycan transglycosylase RlpA	NA	F5B3X9	Synechococcus_phage	53.2	3.6e-09
AUU32617.1|3538913_3540026_-	rod shape-determining protein RodA	NA	NA	NA	NA	NA
AUU32618.1|3540028_3541930_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
AUU32619.1|3541960_3542428_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AUU32620.1|3542431_3542749_-	ribosome silencing factor RsfS	NA	NA	NA	NA	NA
AUU32621.1|3543008_3543620_-	adenosylcobalamin/alpha-ribazole phosphatase	NA	NA	NA	NA	NA
AUU32622.1|3543643_3544285_-	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AUU32623.1|3544286_3545318_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
AUU32624.1|3545317_3545899_-	LPS assembly lipoprotein LptE	NA	NA	NA	NA	NA
AUU32625.1|3545913_3548496_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	42.3	5.2e-184
>prophage 209
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3556211	3559744	4576448		Bathycoccus_sp._RCC1105_virus(50.0%)	3	NA	NA
AUU32632.1|3556211_3557882_-	molecular chaperone HscC	NA	E5EQT9	Bathycoccus_sp._RCC1105_virus	35.5	5.2e-76
AUU32633.1|3557965_3558901_-	pyrimidine-specific ribonucleoside hydrolase RihA	NA	NA	NA	NA	NA
AUU32634.1|3559018_3559744_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	1.7e-31
>prophage 210
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3565626	3566706	4576448		Pseudomonas_phage(100.0%)	1	NA	NA
AUU32640.1|3565626_3566706_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	46.6	4.3e-47
>prophage 211
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3570801	3572466	4576448		Ostreococcus_tauri_virus(100.0%)	1	NA	NA
AUU32643.1|3570801_3572466_-	asparagine synthetase B	NA	A9YVS6	Ostreococcus_tauri_virus	39.1	1.4e-84
>prophage 212
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3577222	3581036	4576448	tRNA	Vibrio_phage(50.0%)	2	NA	NA
AUU32648.1|3577222_3579169_+	PTS N-acetyl glucosamine transporter subunit IIABC	NA	A0A2I7SAJ6	Vibrio_phage	47.3	1.6e-07
AUU32649.1|3579371_3581036_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	98.9	0.0e+00
>prophage 213
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3585304	3586069	4576448		Mycobacterium_phage(100.0%)	1	NA	NA
AUU32657.1|3585304_3586069_-	alpha/beta hydrolase	NA	A0A1J0GVH7	Mycobacterium_phage	35.4	4.4e-06
>prophage 214
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3591909	3594104	4576448		Escherichia_phage(33.33%)	5	NA	NA
AUU33626.1|3591909_3592176_+	hypothetical protein	NA	Q71TE9	Escherichia_phage	93.2	2.0e-43
AUU32661.1|3592094_3592598_+	insertion element IS1 protein InsB	NA	U5P0U6	Shigella_phage	93.2	9.1e-85
AUU32662.1|3592608_3592746_-	ornithine decarboxylase	NA	NA	NA	NA	NA
AUU32663.1|3593130_3593265_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AUU32664.1|3593426_3594104_-	two-component system response regulator KdpE	NA	W8CYM9	Bacillus_phage	30.6	1.2e-26
>prophage 215
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3604296	3607346	4576448		Hokovirus(50.0%)	2	NA	NA
AUU32672.1|3604296_3605715_+	deoxyribodipyrimidine photo-lyase	NA	A0A1V0SGL1	Hokovirus	31.6	4.4e-60
AUU32673.1|3605864_3607346_-	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	28.2	1.1e-45
>prophage 216
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3610724	3611516	4576448		Kaumoebavirus(100.0%)	1	NA	NA
AUU32678.1|3610724_3611516_+	endonuclease VII	NA	A0A1V0CNR6	Kaumoebavirus	28.8	3.7e-08
>prophage 217
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3647065	3650585	4576448		Vibrio_phage(33.33%)	4	NA	NA
AUU32707.1|3647065_3647785_+	nicotinamide riboside transporter PnuC	NA	A0A126HGA3	Vibrio_phage	32.7	9.2e-22
AUU32708.1|3647781_3648723_-	zinc transporter ZitB	NA	A0A1V0SED0	Indivirus	28.2	2.2e-23
AUU32709.1|3648836_3649217_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32710.1|3649532_3650585_+	phospho-2-dehydro-3-deoxyheptonate aldolase Phe-sensitive	NA	A0A2I6UFP9	Klebsiella_phage	49.4	2.6e-81
>prophage 218
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3654948	3657698	4576448		Tupanvirus(50.0%)	2	NA	NA
AUU32715.1|3654948_3655965_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	45.7	6.8e-79
AUU32716.1|3656225_3657698_-	molybdate ABC transporter ATP-binding protein ModF	NA	A0A1M7XV31	Cedratvirus	28.8	1.9e-13
>prophage 219
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3661239	3702728	4576448	transposase,integrase	Enterobacteria_phage(23.08%)	29	3667143:3667202	3687942:3688423
AUU32721.1|3661239_3662298_+	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	35.9	1.5e-20
AUU33630.1|3663353_3664067_-|integrase	integrase	integrase	K7PHK0	Enterobacteria_phage	46.9	4.6e-42
AUU32722.1|3665532_3665829_-	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	83.5	6.2e-41
AUU32723.1|3665806_3667168_-	exodeoxyribonuclease VIII	NA	A0A0U2I1R6	Escherichia_phage	82.8	1.3e-170
3667143:3667202	attL	TGAGGTAGCCTGAGTTTAACGGACACTCCTTCCTGAAATAGAATGGCATCAGAAGGAGCT	NA	NA	NA	NA
AUU32724.1|3667675_3668888_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	98.6	2.1e-167
AUU32725.1|3670680_3671355_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
AUU32726.1|3671693_3672203_-	DedA family protein	NA	NA	NA	NA	NA
AUU32727.1|3672314_3673483_-|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
AUU32728.1|3673672_3674743_+|integrase	integrase	integrase	K7P6P6	Enterobacteria_phage	99.7	1.1e-201
AUU32729.1|3674877_3676161_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUU32730.1|3676301_3678482_-	hydratase	NA	NA	NA	NA	NA
AUU32731.1|3679579_3680899_-	anion permease	NA	NA	NA	NA	NA
AUU32732.1|3680974_3682027_-	4-oxalomesaconate tautomerase	NA	NA	NA	NA	NA
AUU32733.1|3683981_3684977_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
AUU32734.1|3686189_3687143_+	invasion protein	NA	NA	NA	NA	NA
AUU32735.1|3687143_3687323_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32736.1|3687322_3687940_-	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	77.0	6.3e-80
AUU32737.1|3688005_3689161_+|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	3.0e-67
3687942:3688423	attR	TGAGGTAGCCTGAGTTTAACGGACACTCCTTCCTGAAATAGAATGGCATCAGAAGGAGCTAATAATGAGCAGAAAAACCCAACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCTTGAAAATCAACTTTCGATCAGTGAAGGCGCTTCCCGATTATCCCTTCCTGAAGGCACTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTACTCCTGGTTCCCGCACGGTGGCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGAGCGAGATATATTAAAAAAAGCAACAGCGTATTTTGCACAGGAGTCGCTGAAAAATACGCGTTAATCGAACAATGGCGACAACAATTTCCCATTGAAGCGATGTGTCAGGTATTTGGTGTATCCAGGAGCGGTTATTACAACTGGGTACAGCATGAACCCTCAGACAGAAAACAAAGTGA	NA	NA	NA	NA
AUU32738.1|3689884_3690058_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32739.1|3690072_3691191_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
AUU32740.1|3691256_3691505_+	DUF1158 domain-containing protein	NA	NA	NA	NA	NA
AUU32741.1|3691569_3691938_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32742.1|3692031_3692685_+	oxygen-insensitive NAD(P)H nitroreductase	NA	NA	NA	NA	NA
AUU32743.1|3692792_3694040_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AUU32744.1|3694107_3695484_-	phenylalanine transporter	NA	NA	NA	NA	NA
AUU33631.1|3699266_3699395_-	umuD domain protein	NA	O64339	Escherichia_phage	64.7	3.1e-05
AUU32745.1|3699417_3700690_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AUU32746.1|3701842_3701998_-	copper transporter	NA	NA	NA	NA	NA
AUU32747.1|3702044_3702728_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.1	1.0e-30
>prophage 220
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3715667	3718798	4576448	tRNA	Enterococcus_phage(50.0%)	4	NA	NA
AUU32756.1|3715667_3716534_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	37.5	1.7e-30
AUU32757.1|3716535_3716748_+	ribosome-associated protein	NA	NA	NA	NA	NA
AUU32758.1|3716855_3717377_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AUU32759.1|3717412_3718798_-|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	34.8	3.9e-45
>prophage 221
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3726520	3728302	4576448		Ostreococcus_tauri_virus(100.0%)	1	NA	NA
AUU32766.1|3726520_3728302_-	glyoxylate carboligase	NA	E4WLQ6	Ostreococcus_tauri_virus	26.8	6.0e-38
>prophage 222
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3735208	3735895	4576448		Planktothrix_phage(100.0%)	1	NA	NA
AUU32772.1|3735208_3735895_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.6	2.9e-33
>prophage 223
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3739030	3739708	4576448		Bacillus_virus(100.0%)	1	NA	NA
AUU32776.1|3739030_3739708_-	iron ABC transporter ATP-binding protein FetA	NA	G3M9Y6	Bacillus_virus	34.3	4.0e-27
>prophage 224
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3744247	3882901	4576448	integrase,protease,tail,tRNA,transposase	Shigella_phage(22.73%)	119	3814847:3814871	3819169:3819193
AUU32782.1|3744247_3746752_+	copper-exporting P-type ATPase CopA	NA	A0A218MNH6	uncultured_virus	38.2	2.9e-115
AUU32783.1|3746966_3747308_-	addiction module antidote protein, HigA family	NA	A0A222YWD7	Escherichia_phage	74.5	3.0e-39
AUU32784.1|3747445_3748240_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32785.1|3748149_3748428_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32786.1|3748443_3748923_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AUU32787.1|3748959_3750612_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
AUU32788.1|3751037_3752311_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AUU32789.1|3753623_3755300_+	Kef family K(+) transporter	NA	NA	NA	NA	NA
AUU32790.1|3755432_3756737_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
AUU32791.1|3757844_3758807_-	ferrochelatase	NA	NA	NA	NA	NA
AUU32792.1|3758938_3759583_-	adenylate kinase	NA	NA	NA	NA	NA
AUU32793.1|3759763_3761638_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	38.0	1.8e-117
AUU32794.1|3761747_3762353_-	recombination protein RecR	NA	NA	NA	NA	NA
AUU32795.1|3762352_3762682_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AUU32796.1|3762734_3764660_-	DNA polymerase III subunit gamma/tau	NA	A0A1L2BWV7	Bacteriophage	41.5	5.1e-43
AUU32797.1|3764788_3765340_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.3	3.7e-31
AUU32798.1|3765407_3765515_-	adenine phosphoribosyltransferase	NA	NA	NA	NA	NA
AUU32799.1|3765492_3765870_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32800.1|3765939_3766467_+	primosomal replication protein N''	NA	NA	NA	NA	NA
AUU32801.1|3766480_3766642_+	DUF2496 domain-containing protein	NA	NA	NA	NA	NA
AUU32802.1|3766853_3770216_-	mechanosensitive channel MscK	NA	NA	NA	NA	NA
AUU32803.1|3770343_3770991_-	transcriptional regulator	NA	NA	NA	NA	NA
AUU32804.1|3771132_3772326_+	MexE family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUU32805.1|3772348_3775498_+	multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	23.9	6.2e-54
AUU32806.1|3776043_3776418_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
AUU32807.1|3776443_3776662_+	hemolysin expression-modulating protein Hha	NA	NA	NA	NA	NA
AUU32808.1|3776833_3777385_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
AUU32809.1|3777500_3777971_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33633.1|3778134_3779685_+	EAL domain-containing protein	NA	NA	NA	NA	NA
AUU32810.1|3779726_3780080_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AUU32811.1|3780380_3780770_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
AUU32812.1|3780799_3782128_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AUU32813.1|3782238_3782811_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32814.1|3783937_3785224_-	ammonia channel	NA	NA	NA	NA	NA
AUU32815.1|3785253_3785592_-	nitrogen regulatory protein P-II 2	NA	NA	NA	NA	NA
AUU32816.1|3785772_3787554_-	multidrug ABC transporter permease/ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.0	1.3e-40
AUU32817.1|3787546_3789319_-	multidrug ABC transporter permease/ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	3.4e-49
AUU32818.1|3789960_3790779_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
AUU32819.1|3792642_3793338_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.0	1.9e-88
AUU32820.1|3793389_3793788_-	long-chain acyl-CoA thioesterase FadM	NA	NA	NA	NA	NA
AUU32821.1|3793881_3794253_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32822.1|3794403_3796275_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AUU32823.1|3796466_3796739_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.1e-20
AUU32824.1|3796947_3799302_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.3	4.7e-224
AUU32825.1|3799489_3800764_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.4	8.7e-132
AUU32826.1|3800889_3801513_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
AUU32827.1|3801759_3803058_-	trigger factor	NA	NA	NA	NA	NA
AUU32828.1|3803204_3803468_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32829.1|3803401_3803719_-	protein BolA	NA	NA	NA	NA	NA
AUU32830.1|3804023_3804602_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32831.1|3804645_3806121_+	muropeptide transporter AmpG	NA	NA	NA	NA	NA
AUU32832.1|3806490_3807165_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
AUU32833.1|3807161_3807509_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	4.1e-44
AUU32834.1|3809841_3810102_-	toxin-antitoxin system HicB family antitoxin	NA	A0A088CPT2	Enterobacteria_phage	96.5	1.8e-36
AUU33634.1|3811312_3811936_+|tail	phage tail protein	tail	A0A088CQ58	Enterobacteria_phage	74.9	2.3e-77
AUU32835.1|3812002_3813268_-	glucosyl transferase	NA	Q05056	Shigella_phage	100.0	1.9e-235
AUU32836.1|3813280_3814198_-	glycosyltransferase	NA	M1FQW5	Enterobacteria_phage	96.7	3.5e-167
AUU32837.1|3814194_3814557_-	GtrA family protein	NA	U5P0S6	Shigella_phage	90.0	2.1e-54
3814847:3814871	attL	ATTCGTAATGCGAAGGTCGTAGGTT	NA	NA	NA	NA
AUU32838.1|3816349_3817562_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	99.0	4.2e-168
AUU32839.1|3818500_3819133_+|integrase	phage integrase family protein	integrase	U5P434	Shigella_phage	100.0	2.4e-119
AUU32840.1|3819394_3819757_+	GtrA family protein	NA	U5P0S6	Shigella_phage	99.2	1.1e-58
3819169:3819193	attR	AACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
AUU32841.1|3819753_3820671_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	99.7	4.4e-170
AUU33635.1|3821129_3821315_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32842.1|3821702_3821900_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32843.1|3822746_3823796_+	acyltransferase	NA	S5FNR8	Shigella_phage	98.3	6.6e-194
AUU32844.1|3825236_3825428_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32845.1|3825626_3826346_+	(Fe-S)-binding protein	NA	NA	NA	NA	NA
AUU32846.1|3826356_3827784_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
AUU32847.1|3827776_3828472_+	lactate utilization protein C	NA	NA	NA	NA	NA
AUU32848.1|3828426_3828639_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32849.1|3829529_3831623_-|transposase	transposase	transposase	A0A2D1GNK9	Pseudomonas_phage	49.2	1.5e-173
AUU32850.1|3831624_3831876_-	DNA-binding protein	NA	A0A2D1GNH1	Pseudomonas_phage	53.0	4.8e-18
AUU32851.1|3832845_3833352_+	hypothetical protein	NA	A0A2D1GNR8	Pseudomonas_phage	60.9	1.1e-32
AUU32852.1|3833925_3835093_+|transposase	transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
AUU32853.1|3835809_3836577_+	taurine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	39.8	4.3e-25
AUU32854.1|3836573_3837401_+	taurine transporter subunit	NA	NA	NA	NA	NA
AUU32855.1|3837397_3837781_+	taurine dioxygenase	NA	NA	NA	NA	NA
AUU32856.1|3837790_3838249_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32857.1|3838354_3839329_-	delta-aminolevulinic acid dehydratase	NA	NA	NA	NA	NA
AUU32858.1|3840269_3841542_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	98.7	1.3e-175
AUU32859.1|3842147_3843294_+|transposase	transposase	transposase	U5P429	Shigella_phage	92.2	1.5e-146
AUU32860.1|3844705_3845209_+	transcriptional regulator	NA	NA	NA	NA	NA
AUU32861.1|3845209_3846367_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	A0A2H4JAN9	uncultured_Caudovirales_phage	22.1	3.9e-06
AUU32862.1|3846504_3846699_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32863.1|3846718_3847939_+	peptide transporter	NA	NA	NA	NA	NA
AUU32864.1|3847951_3849046_+	DUF1615 domain-containing protein	NA	NA	NA	NA	NA
AUU32865.1|3849104_3849413_-	DUF2755 domain-containing protein	NA	NA	NA	NA	NA
AUU32866.1|3849485_3849674_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32867.1|3849672_3849885_+	DUF2754 domain-containing protein	NA	NA	NA	NA	NA
AUU32868.1|3849908_3851003_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
AUU32869.1|3851080_3851284_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32870.1|3851465_3851726_+	anti-adapter protein IraP	NA	NA	NA	NA	NA
AUU32871.1|3853359_3853680_+	phosphate starvation-inducible protein PsiF	NA	NA	NA	NA	NA
AUU32872.1|3853730_3854944_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	99.0	4.2e-168
AUU32873.1|3855094_3856210_+	diguanylate cyclase AdrA	NA	A0A127AWB9	Bacillus_phage	33.9	3.3e-18
AUU32874.1|3856226_3857036_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AUU32875.1|3857155_3857614_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
AUU32876.1|3857796_3858321_+	shikimate kinase AroL	NA	NA	NA	NA	NA
AUU32877.1|3858370_3858562_+	protein YaiA	NA	NA	NA	NA	NA
AUU32878.1|3858592_3858790_+	hypothetical protein	NA	NA	NA	NA	NA
AUU32879.1|3858819_3859497_+	protein AroM	NA	NA	NA	NA	NA
AUU32880.1|3859568_3859853_+	pyrimidine/purine nucleoside phosphorylase	NA	NA	NA	NA	NA
AUU32881.1|3860838_3861120_+	DUF2773 domain-containing protein	NA	NA	NA	NA	NA
AUU32882.1|3861116_3861572_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33636.1|3861649_3862561_-	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	63.3	6.0e-103
AUU32883.1|3862685_3863594_+	fructokinase	NA	NA	NA	NA	NA
AUU33637.1|3863736_3864918_-	MFS transporter AraJ	NA	NA	NA	NA	NA
AUU32884.1|3865043_3868187_-	exonuclease subunit SbcC	NA	G3MAB6	Bacillus_virus	26.9	5.8e-12
AUU32885.1|3868183_3869386_-	exonuclease sbcCD subunit D	NA	R4JGS2	Bacillus_phage	32.4	2.4e-06
AUU32886.1|3869575_3870265_+	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.6	8.2e-36
AUU32887.1|3870322_3871618_+	two-component system sensor histidine kinase PhoR	NA	W8CYF6	Bacillus_phage	30.8	1.3e-26
AUU32888.1|3872024_3873344_+	branched-chain amino acid transporter carrier protein BrnQ	NA	NA	NA	NA	NA
AUU32889.1|3873419_3874793_+	proline-specific permease ProY	NA	NA	NA	NA	NA
AUU33638.1|3874951_3876766_+	maltodextrin glucosidase	NA	NA	NA	NA	NA
AUU32890.1|3877436_3878507_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AUU32891.1|3878561_3879689_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	46.3	1.6e-89
AUU32892.1|3879711_3880044_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	33.0	2.8e-10
AUU32893.1|3880071_3881919_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AUU32894.1|3881929_3882901_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	37.9	1.0e-44
>prophage 225
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3887071	3887542	4576448		Staphylococcus_phage(100.0%)	1	NA	NA
AUU32899.1|3887071_3887542_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	47.4	1.3e-29
>prophage 226
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3893848	3958301	4576448	transposase,plate,integrase,tRNA	Shigella_phage(30.77%)	52	3898265:3898281	3944196:3944212
AUU32907.1|3893848_3895297_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
AUU32908.1|3895350_3895941_-	protein deglycase YajL	NA	NA	NA	NA	NA
AUU32909.1|3895903_3896815_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AUU32910.1|3896982_3897474_+	nucleotide-binding protein	NA	NA	NA	NA	NA
AUU32911.1|3897533_3899264_-	hypothetical protein	NA	NA	NA	NA	NA
3898265:3898281	attL	GACGTTTTCTCATCAAT	NA	NA	NA	NA
AUU32912.1|3901652_3903023_-	MFS transporter	NA	NA	NA	NA	NA
AUU32913.1|3903416_3904691_+	sel1 repeat family protein	NA	NA	NA	NA	NA
AUU32914.1|3904931_3905867_+	sel1 repeat family protein	NA	NA	NA	NA	NA
AUU32915.1|3905922_3906465_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUU32916.1|3906448_3906760_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
AUU32917.1|3906944_3907835_-	protoheme IX farnesyltransferase	NA	NA	NA	NA	NA
AUU32918.1|3907846_3908176_-	cytochrome bo(3) ubiquinol oxidase subunit 4	NA	NA	NA	NA	NA
AUU32919.1|3908175_3908790_-	cytochrome bo(3) ubiquinol oxidase subunit 3	NA	NA	NA	NA	NA
AUU32920.1|3908779_3909010_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32921.1|3909015_3909690_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
AUU32922.1|3909686_3910034_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	4.1e-44
AUU32923.1|3910053_3911655_+|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.2	4.1e-147
AUU32924.1|3916902_3918234_-	acyltransferase	NA	A0A2D1GLX5	Escherichia_phage	98.9	8.5e-215
AUU32925.1|3918243_3918936_-	DNA transfer protein	NA	G5DA80	Enterobacteria_phage	94.8	4.3e-109
AUU32926.1|3918938_3919394_-	hypothetical protein	NA	Q716G5	Shigella_phage	98.7	4.4e-86
AUU32927.1|3919555_3920723_+|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
AUU33639.1|3920998_3921763_+|integrase	site-specific integrase	integrase	Q9ZXG4	Shigella_phage	99.6	4.4e-147
AUU32928.1|3921967_3923221_-	gamma-glutamyl-phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	5.8e-96
AUU32929.1|3923232_3924336_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	8.2e-62
AUU32930.1|3924623_3925679_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	60.9	4.5e-118
AUU32931.1|3925717_3926119_-	sigma factor-binding protein Crl	NA	NA	NA	NA	NA
AUU32932.1|3926176_3927421_-	esterase	NA	NA	NA	NA	NA
AUU32933.1|3927512_3927971_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
AUU32934.1|3928232_3929690_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA	NA
AUU32935.1|3931414_3931678_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32936.1|3931712_3932165_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUU32937.1|3932929_3933349_-	type II toxin-antitoxin system YafO family toxin	NA	NA	NA	NA	NA
AUU32938.1|3933351_3933645_-	type II toxin-antitoxin system YafN family antitoxin	NA	NA	NA	NA	NA
AUU32939.1|3933696_3934752_-	DNA polymerase IV	NA	NA	NA	NA	NA
AUU33640.1|3934822_3935608_-	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA	NA
AUU32940.1|3935552_3937292_+	flagellar type III secretion system protein FlhA	NA	NA	NA	NA	NA
AUU32941.1|3937508_3938006_-|transposase	transposase	transposase	NA	NA	NA	NA
AUU32942.1|3939086_3939827_+	transpeptidase	NA	NA	NA	NA	NA
AUU32943.1|3939797_3940565_-	class II glutamine amidotransferase	NA	NA	NA	NA	NA
AUU32944.1|3940770_3941349_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	32.0	1.1e-14
AUU32945.1|3941587_3944032_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUU32946.1|3944074_3944548_-	C-lysozyme inhibitor	NA	NA	NA	NA	NA
3944196:3944212	attR	GACGTTTTCTCATCAAT	NA	NA	NA	NA
AUU32947.1|3944701_3945472_+	amidohydrolase	NA	NA	NA	NA	NA
AUU32948.1|3945879_3946200_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32949.1|3949850_3950258_-	type IV secretion protein Rhs	NA	NA	NA	NA	NA
AUU32950.1|3952984_3953371_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32951.1|3953367_3953853_-	hypothetical protein	NA	NA	NA	NA	NA
AUU32952.1|3954768_3956027_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	1.1e-168
AUU32953.1|3956079_3956379_+	FHA domain-containing protein	NA	NA	NA	NA	NA
AUU32954.1|3956615_3956993_+	type VI secretion system-associated protein TagK	NA	NA	NA	NA	NA
AUU32955.1|3956979_3957810_+	impE family protein	NA	NA	NA	NA	NA
AUU32956.1|3957806_3958301_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
>prophage 227
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3962588	3966790	4576448		Bradyrhizobium_phage(33.33%)	5	NA	NA
AUU33641.1|3962588_3963320_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	38.6	7.6e-40
AUU32960.1|3963384_3963852_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.7	1.0e-50
AUU32961.1|3963848_3964571_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUU32962.1|3964604_3965360_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AUU32963.1|3965431_3966790_+	lytic transglycosylase	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	36.0	5.8e-09
>prophage 228
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3971077	3971881	4576448		Indivirus(100.0%)	1	NA	NA
AUU32967.1|3971077_3971881_-	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	36.2	2.1e-38
>prophage 229
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3978402	3979434	4576448		Planktothrix_phage(100.0%)	1	NA	NA
AUU32969.1|3978402_3979434_+	D-methionine ABC transporter, ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.7e-35
>prophage 230
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	3992392	3996508	4576448		Saccharomonospora_phage(50.0%)	2	NA	NA
AUU32984.1|3992392_3995875_-	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	36.9	2.2e-209
AUU32985.1|3995911_3996508_-	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	40.0	1.8e-26
>prophage 231
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4005336	4006095	4576448		Flavobacterium_phage(100.0%)	1	NA	NA
AUU32994.1|4005336_4006095_-	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	44.4	7.7e-27
>prophage 232
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4017977	4019402	4576448	protease	uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AUU33006.1|4017977_4019402_-|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	29.2	6.5e-27
>prophage 233
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4023331	4023676	4576448		Lake_Baikal_phage(100.0%)	1	NA	NA
AUU33011.1|4023331_4023676_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	51.4	4.5e-27
>prophage 234
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4029587	4030385	4576448		Planktothrix_phage(100.0%)	1	NA	NA
AUU33016.1|4029587_4030385_-	iron-hydroxamate transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	26.9	6.0e-14
>prophage 235
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4035628	4042434	4576448	tRNA	Acanthamoeba_polyphaga_mimivirus(50.0%)	6	NA	NA
AUU33020.1|4035628_4038058_-	ATP-dependent helicase HrpB	NA	A0A0G2Y9F4	Acanthamoeba_polyphaga_mimivirus	30.3	7.4e-39
AUU33021.1|4038131_4038662_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA	NA
AUU33022.1|4038676_4039381_+	DNA/RNA nuclease SfsA	NA	NA	NA	NA	NA
AUU33023.1|4039558_4040014_+	RNA polymerase-binding transcription factor DksA	NA	NA	NA	NA	NA
AUU33024.1|4040050_4040977_+|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	tRNA	NA	NA	NA	NA
AUU33025.1|4041015_4042434_+	polynucleotide adenylyltransferase PcnB	NA	H7BUW3	unidentified_phage	37.9	3.2e-26
>prophage 236
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4045979	4046882	4576448	transposase	Sodalis_phage(100.0%)	1	NA	NA
AUU33030.1|4045979_4046882_-|transposase	ISNCY family transposase	transposase	Q2A0A7	Sodalis_phage	50.6	4.3e-61
>prophage 237
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4050144	4052419	4576448		Anomala_cuprea_entomopoxvirus(50.0%)	3	NA	NA
AUU33035.1|4050144_4051071_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	34.0	5.9e-21
AUU33036.1|4051179_4051842_+	carbonic anhydrase	NA	NA	NA	NA	NA
AUU33037.1|4051882_4052419_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	33.1	5.1e-17
>prophage 238
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4064357	4065794	4576448		Erysipelothrix_phage(100.0%)	1	NA	NA
AUU33643.1|4064357_4065794_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.8	4.2e-42
>prophage 239
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4074421	4074973	4576448		Sphingobium_phage(100.0%)	1	NA	NA
AUU33051.1|4074421_4074973_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	31.6	1.5e-11
>prophage 240
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4079218	4080262	4576448		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
AUU33057.1|4079218_4080262_-	guanosine monophosphate reductase	NA	A0A0N9Q9A5	Chrysochromulina_ericina_virus	56.0	1.8e-103
>prophage 241
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4121433	4122132	4576448		Planktothrix_phage(100.0%)	1	NA	NA
AUU33095.1|4121433_4122132_+	thiamine ABC transporter ATP-binding protein ThiQ	NA	G9BWD6	Planktothrix_phage	37.6	9.5e-24
>prophage 242
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4128494	4133917	4576448		Yellowstone_lake_phycodnavirus(50.0%)	2	NA	NA
AUU33099.1|4128494_4130846_+	DNA polymerase II	NA	A0A0P0YM26	Yellowstone_lake_phycodnavirus	25.6	6.0e-38
AUU33100.1|4131010_4133917_+	RNA polymerase-associated protein RapA	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	37.9	5.7e-22
>prophage 243
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4141661	4143061	4576448		Microcystis_phage(50.0%)	2	NA	NA
AUU33108.1|4141661_4142504_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	A0A075BTY6	Microcystis_phage	42.0	1.0e-08
AUU33109.1|4142581_4143061_-	type 3 dihydrofolate reductase	NA	A0A219UQN5	Bacillus_phage	46.4	1.0e-29
>prophage 244
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4150955	4156616	4576448		Vibrio_phage(50.0%)	4	NA	NA
AUU33118.1|4150955_4152470_+	L-carnitine/gamma-butyrobetaine antiporter	NA	A0A2I7QNT1	Vibrio_phage	21.1	3.5e-07
AUU33119.1|4152500_4153643_+	crotonobetainyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUU33120.1|4153771_4154989_+	L-carnitine CoA-transferase	NA	NA	NA	NA	NA
AUU33121.1|4155062_4156616_+	ATP-dependent acyl-CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	27.1	1.6e-34
>prophage 245
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4162087	4163236	4576448		Halovirus(100.0%)	1	NA	NA
AUU33127.1|4162087_4163236_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	32.6	1.7e-49
>prophage 246
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4167641	4170458	4576448	tRNA	Tupanvirus(100.0%)	1	NA	NA
AUU33133.1|4167641_4170458_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2K9L260	Tupanvirus	26.5	3.5e-77
>prophage 247
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4174497	4183566	4576448		uncultured_Caudovirales_phage(20.0%)	9	NA	NA
AUU33139.1|4174497_4175664_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	49.7	8.3e-89
AUU33140.1|4176192_4176402_+	regulatory protein MokC	NA	A0A0P0ZAX5	Stx2-converting_phage	73.9	8.0e-19
AUU33141.1|4176505_4177636_-	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	34.3	7.9e-28
AUU33142.1|4177724_4179641_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	51.1	9.0e-149
AUU33143.1|4180017_4180422_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33144.1|4180447_4181161_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33145.1|4181309_4181876_+	succinate-acetate/proton symporter SatP	NA	NA	NA	NA	NA
AUU33146.1|4181910_4182498_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AUU33147.1|4182612_4183566_-	transaldolase 1	NA	A0A127KNC6	Cyanophage	31.5	1.7e-10
>prophage 248
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4195400	4197514	4576448		Ectocarpus_siliculosus_virus(50.0%)	2	NA	NA
AUU33157.1|4195400_4196825_-	two-component system sensor histidine kinase CreC	NA	Q8QKV7	Ectocarpus_siliculosus_virus	20.0	4.7e-09
AUU33158.1|4196824_4197514_-	two-component system response regulator CreB	NA	W8CYM9	Bacillus_phage	35.3	3.9e-30
>prophage 249
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4200797	4206153	4576448		Bacillus_phage(33.33%)	4	NA	NA
AUU33648.1|4200797_4202735_-	murein transglycosylase	NA	A0A1P8CWQ1	Bacillus_phage	34.8	4.0e-11
AUU33649.1|4202843_4202972_-	methionine aminopeptidase	NA	NA	NA	NA	NA
AUU33163.1|4202945_4204613_+	energy-dependent translational throttle protein EttA	NA	A0A1V0SKJ1	Klosneuvirus	26.2	1.1e-41
AUU33164.1|4204920_4206153_-	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA	A0A0C5K935	Enterococcus_phage	42.6	1.6e-82
>prophage 250
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4212873	4214196	4576448		Geobacillus_virus(100.0%)	1	NA	NA
AUU33171.1|4212873_4214196_-	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	39.3	1.3e-77
>prophage 251
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4219923	4222799	4576448		Salmonella_phage(50.0%)	3	NA	NA
AUU33177.1|4219923_4220103_-	DUF1328 domain-containing protein	NA	A0A0N7CBR2	Salmonella_phage	64.2	2.0e-10
AUU33178.1|4220211_4220817_-	molecular chaperone OsmY	NA	NA	NA	NA	NA
AUU33179.1|4221209_4222799_-	peptide chain release factor 3	NA	D0R0F5	Streptococcus_phage	25.2	1.8e-30
>prophage 252
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4231188	4232468	4576448		Salmonella_phage(50.0%)	2	NA	NA
AUU33188.1|4231188_4231728_+	primosomal protein 1	NA	T1SA92	Salmonella_phage	62.8	2.9e-28
AUU33189.1|4231730_4232468_+	DNA replication protein DnaC	NA	V5UQI5	Shigella_phage	50.8	7.6e-64
>prophage 253
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4239392	4241057	4576448		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AUU33192.1|4239392_4241057_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	38.8	1.4e-12
>prophage 254
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4259398	4267177	4576448	transposase	Acinetobacter_phage(66.67%)	6	NA	NA
AUU33208.1|4259398_4261831_+	DEAD/DEAH box helicase	NA	A0A0K1LLU7	Rhodobacter_phage	22.8	6.7e-08
AUU33209.1|4261897_4263367_+	restriction endonuclease subunit M	NA	J7I0U9	Acinetobacter_phage	27.3	9.6e-34
AUU33210.1|4263366_4265028_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AUU33211.1|4265248_4265590_+	endoribonuclease SymE	NA	NA	NA	NA	NA
AUU33212.1|4265636_4265957_-	hypothetical protein	NA	NA	NA	NA	NA
AUU33213.1|4266021_4267177_+|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
>prophage 255
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4273581	4274562	4576448		Stx2-converting_phage(100.0%)	1	NA	NA
AUU33652.1|4273581_4274562_-	sialate O-acetylesterase	NA	Q08JA2	Stx2-converting_phage	55.9	1.1e-99
>prophage 256
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4279002	4279599	4576448		Escherichia_phage(100.0%)	1	NA	NA
AUU33219.1|4279002_4279599_+	type 1 fimbriae regulatory protein FimE	NA	A0A2L1IV36	Escherichia_phage	53.4	3.9e-50
>prophage 257
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4289305	4290766	4576448		Ostreococcus_tauri_virus(100.0%)	1	NA	NA
AUU33228.1|4289305_4290766_+	fructuronate reductase	NA	H8ZJP8	Ostreococcus_tauri_virus	32.2	1.2e-49
>prophage 258
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4297334	4299391	4576448	transposase	Clostridioides_phage(50.0%)	2	NA	NA
AUU33238.1|4297334_4297919_+	RNA 2'-phosphotransferase	NA	A0A2R2ZGT8	Clostridioides_phage	45.6	9.7e-38
AUU33239.1|4298117_4299391_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
>prophage 259
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4320195	4321698	4576448		Burkholderia_virus(100.0%)	1	NA	NA
AUU33255.1|4320195_4321698_-	proline/glycine betaine transporter ProP	NA	Q6JIH2	Burkholderia_virus	31.0	7.0e-56
>prophage 260
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4326535	4327324	4576448		Planktothrix_phage(100.0%)	1	NA	NA
AUU33259.1|4326535_4327324_+	phosphonates import ATP-binding protein PhnC	NA	G9BWD6	Planktothrix_phage	37.2	1.4e-26
>prophage 261
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4332928	4334478	4576448		Bacillus_virus(50.0%)	2	NA	NA
AUU33266.1|4332928_4333687_+	phosphonate C-P lyase system protein PhnK	NA	G3M9Y6	Bacillus_virus	28.2	6.1e-16
AUU33267.1|4333797_4334478_+	phosphonate C-P lyase system protein PhnL	NA	G9BWD6	Planktothrix_phage	33.9	7.6e-18
>prophage 262
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4337893	4342456	4576448		Escherichia_phage(50.0%)	3	NA	NA
AUU33272.1|4337893_4338526_-	N-acetyltransferase	NA	A0A077SLI4	Escherichia_phage	49.0	5.4e-50
AUU33273.1|4340823_4340937_-	histidine kinase	NA	NA	NA	NA	NA
AUU33274.1|4340935_4342456_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	1.0e-17
>prophage 263
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4349988	4363019	4576448	protease,tRNA	Lactococcus_phage(20.0%)	11	NA	NA
AUU33281.1|4349988_4352430_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	33.1	6.4e-67
AUU33282.1|4352468_4352894_-	transcriptional regulator	NA	NA	NA	NA	NA
AUU33283.1|4353098_4354397_-	adenylosuccinate synthetase	NA	W5S5V7	Pithovirus	35.6	6.4e-66
AUU33284.1|4354500_4354698_-	DUF2065 domain-containing protein	NA	NA	NA	NA	NA
AUU33285.1|4354779_4355784_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AUU33286.1|4355786_4357046_-|protease	protease modulator HflK	protease	A0A1L2CVV0	Pectobacterium_phage	25.5	3.6e-05
AUU33287.1|4357131_4358412_-	GTPase HflX	NA	NA	NA	NA	NA
AUU33288.1|4358487_4358796_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AUU33289.1|4358881_4359832_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AUU33290.1|4359824_4361672_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	41.3	4.4e-60
AUU33291.1|4361681_4363019_-	N-acetylmuramoyl-L-alanine amidase AmiB	NA	A0A067ZJB6	Vibrio_phage	31.0	1.1e-17
>prophage 264
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4367165	4367711	4576448		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
AUU33295.1|4367165_4367711_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	40.4	2.2e-28
>prophage 265
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4375127	4376105	4576448		Tupanvirus(100.0%)	1	NA	NA
AUU33300.1|4375127_4376105_-	elongation factor P--(R)-beta-lysine ligase	NA	A0A2K9L3L6	Tupanvirus	27.4	1.5e-27
>prophage 266
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4381025	4381559	4576448		Morganella_phage(100.0%)	1	NA	NA
AUU33306.1|4381025_4381559_+	hypothetical protein	NA	A0A1W6JNX6	Morganella_phage	55.0	2.7e-47
>prophage 267
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4386764	4388748	4576448		Vibrio_phage(50.0%)	2	NA	NA
AUU33313.1|4386764_4388411_-	molecular chaperone GroEL	NA	A0A2I7SAK5	Vibrio_phage	68.9	5.3e-190
AUU33314.1|4388454_4388748_-	co-chaperone GroES	NA	K4F9I2	Cronobacter_phage	45.4	9.2e-13
>prophage 268
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4418747	4422187	4576448		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
AUU33341.1|4418747_4419278_-	inorganic pyrophosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	63.3	1.2e-55
AUU33342.1|4420684_4422187_+	sugar ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	30.3	1.4e-11
>prophage 269
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4425675	4426674	4576448		Klosneuvirus(100.0%)	1	NA	NA
AUU33346.1|4425675_4426674_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	42.7	5.7e-70
>prophage 270
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4430916	4433677	4576448		Vibrio_phage(100.0%)	2	NA	NA
AUU33351.1|4430916_4431381_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	NA	H6WXC9	Vibrio_phage	59.7	1.1e-52
AUU33352.1|4431538_4433677_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	64.4	1.2e-266
>prophage 271
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4437315	4443412	4576448		Paramecium_bursaria_Chlorella_virus(66.67%)	6	NA	NA
AUU33354.1|4437315_4438263_-	HTH-type transcriptional regulator TreR	NA	C6ZCU4	Enterobacteria_phage	21.8	6.0e-13
AUU33662.1|4438447_4438501_+	MgtA leader peptide	NA	NA	NA	NA	NA
AUU33355.1|4438641_4441338_+	magnesium-translocating P-type ATPase	NA	M1HLC0	Paramecium_bursaria_Chlorella_virus	27.3	2.0e-45
AUU33356.1|4441543_4441930_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AUU33357.1|4442002_4442464_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
AUU33358.1|4442476_4443412_-	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	40.2	2.2e-52
>prophage 272
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4450455	4469627	4576448	transposase,tRNA	Stx2-converting_phage(22.22%)	15	NA	NA
AUU33368.1|4450455_4453311_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	36.7	1.0e-140
AUU33663.1|4453310_4453754_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
AUU33369.1|4453887_4455399_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.0	6.0e-47
AUU33370.1|4455665_4456766_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
AUU33371.1|4456765_4457848_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AUU33372.1|4457955_4459470_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.3	1.2e-82
AUU33373.1|4459598_4460618_-	aldehyde reductase Ahr	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.7	8.4e-45
AUU33374.1|4461096_4462290_+	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	42.6	2.6e-77
AUU33375.1|4462441_4464043_-|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.2	4.1e-147
AUU33376.1|4464062_4464410_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	4.1e-44
AUU33377.1|4465194_4466467_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	98.7	2.0e-176
AUU33378.1|4466583_4466856_+	N-acetyltransferase	NA	NA	NA	NA	NA
AUU33379.1|4466942_4467158_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33380.1|4468227_4468464_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33381.1|4468479_4469627_-|transposase	transposase	transposase	U5P429	Shigella_phage	92.2	6.6e-147
>prophage 273
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4482669	4483833	4576448		Ralstonia_phage(100.0%)	1	NA	NA
AUU33397.1|4482669_4483833_-	hypothetical protein	NA	B2ZXR7	Ralstonia_phage	43.5	8.3e-81
>prophage 274
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4502293	4504252	4576448		Staphylococcus_phage(100.0%)	1	NA	NA
AUU33412.1|4502293_4504252_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	40.7	3.9e-91
>prophage 275
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4509835	4511185	4576448		Moraxella_phage(100.0%)	1	NA	NA
AUU33417.1|4509835_4511185_-	guanine/hypoxanthine permease GhxP	NA	A0A0R6PHV4	Moraxella_phage	71.6	1.8e-159
>prophage 276
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4516711	4520324	4576448		Enterobacteria_phage(50.0%)	2	NA	NA
AUU33423.1|4516711_4517248_-	ssDNA-binding protein	NA	A0A0A0P1Q9	Enterobacteria_phage	78.7	1.1e-56
AUU33424.1|4517501_4520324_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	56.1	0.0e+00
>prophage 277
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4524532	4527080	4576448		Yellowstone_lake_mimivirus(50.0%)	2	NA	NA
AUU33430.1|4524532_4525612_-	alanine racemase biosynthetic	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	27.9	5.2e-29
AUU33431.1|4525664_4527080_-	replicative DNA helicase	NA	O80281	Escherichia_phage	78.3	4.8e-200
>prophage 278
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4533670	4534279	4576448		Lactococcus_phage(100.0%)	1	NA	NA
AUU33439.1|4533670_4534279_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
>prophage 279
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4543403	4544519	4576448		Mycoplasma_phage(100.0%)	1	NA	NA
AUU33447.1|4543403_4544519_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	32.2	1.1e-18
>prophage 280
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4561330	4562603	4576448	transposase	Shigella_phage(100.0%)	1	NA	NA
AUU33458.1|4561330_4562603_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
>prophage 281
CP026098	Shigella flexneri strain FDAARGOS_74 chromosome, complete genome	4576448	4565927	4566734	4576448		Escherichia_phage(100.0%)	1	NA	NA
AUU33461.1|4565927_4566734_+	SDR family NAD(P)-dependent oxidoreductase	NA	I7B2R4	Escherichia_phage	30.2	3.0e-13
>prophage 1
CP026099	Shigella flexneri strain FDAARGOS_74 plasmid unnamed	229413	12126	155512	229413	integrase,protease,transposase,tRNA	Stx2-converting_phage(29.63%)	111	8538:8597	59930:61236
8538:8597	attL	TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC	NA	NA	NA	NA
AUU33676.1|12126_13345_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	98.8	5.9e-138
AUU33677.1|13963_14311_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	72.9	2.7e-43
AUU33678.1|17177_17468_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AUU33679.1|17436_17688_-	transporter	NA	NA	NA	NA	NA
AUU33680.1|17809_17932_-	replication protein RepA4	NA	NA	NA	NA	NA
AUU33681.1|20400_20619_+	plasmid maintenance protein CcdA	NA	NA	NA	NA	NA
AUU33682.1|20620_20926_+	plasmid maintenance protein CcdB	NA	NA	NA	NA	NA
AUU33683.1|21318_22956_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
AUU33684.1|23163_23433_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33685.1|23684_24275_+	protein kinase OspG	NA	NA	NA	NA	NA
AUU33686.1|24393_25549_+|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.8e-67
AUU33829.1|25609_25738_-	plasmid mobilization protein	NA	NA	NA	NA	NA
AUU33687.1|26245_27547_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AUU33830.1|29440_32290_-	hypothetical protein	NA	NA	NA	NA	NA
AUU33688.1|32355_32472_+|integrase	integrase	integrase	NA	NA	NA	NA
AUU33831.1|32856_33678_+	carbohydrate transporter	NA	NA	NA	NA	NA
AUU33689.1|33680_34769_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AUU33690.1|34773_35724_+	DUF535 domain-containing protein	NA	NA	NA	NA	NA
AUU33691.1|35788_36733_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA	NA
AUU33692.1|36886_37843_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AUU33693.1|37854_39011_-|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	5.2e-67
AUU33694.1|39049_39235_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
AUU33695.1|39243_39642_-|tRNA	tRNA(fMet)-specific endonuclease VapC	tRNA	NA	NA	NA	NA
AUU33696.1|39641_39872_-	antitoxin	NA	NA	NA	NA	NA
AUU33697.1|39950_40370_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
AUU33832.1|40356_45222_+	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA	NA
AUU33698.1|45241_45988_+	conjugal transfer pilus acetylase TraX	NA	A0A077JBM8	Xanthomonas_phage	32.0	5.4e-09
AUU33833.1|46042_46603_+	conjugal transfer protein	NA	NA	NA	NA	NA
AUU33699.1|46733_46946_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33700.1|47472_48629_-|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	4.0e-67
AUU33701.1|48963_49074_+	hemolysin expression modulating family protein	NA	NA	NA	NA	NA
AUU33702.1|49084_49588_-|transposase	IS1 family transposase	transposase	U5P0U6	Shigella_phage	93.2	1.6e-84
AUU33703.1|49506_49782_-	hypothetical protein	NA	Q71TE9	Escherichia_phage	92.3	5.5e-44
AUU33704.1|49662_49950_+|transposase	transposase	transposase	NA	NA	NA	NA
AUU33705.1|49988_50579_+	DUF2726 domain-containing protein	NA	NA	NA	NA	NA
AUU33706.1|50818_51079_+	replication regulatory protein repA2	NA	NA	NA	NA	NA
AUU33707.1|51130_51256_-	replication protein RepA	NA	NA	NA	NA	NA
AUU33834.1|51302_51377_+	positive regulator of RepFIC repA1 expression	NA	NA	NA	NA	NA
AUU33708.1|51357_52227_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA	NA
AUU33709.1|52926_53118_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33710.1|54018_54207_-	hypothetical protein	NA	NA	NA	NA	NA
AUU33711.1|54295_54559_-	hypothetical protein	NA	NA	NA	NA	NA
AUU33712.1|54608_58703_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	Q9LA58	Enterobacterial_phage	42.3	2.8e-280
AUU33713.1|59517_60006_-	hypothetical protein	NA	A0A0P0ZEB3	Stx2-converting_phage	65.4	1.9e-47
AUU33714.1|61761_62606_-|transposase	IS5/IS1182 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	50.0	3.4e-23
59930:61236	attR	TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATCGTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGGATGTGGCCCAGCCTTTCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTGAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCCGCCATCGCGTTGTCATACGAGTCGCCTGTACTTCCTGTTGATGCCAGTAATCCGGCTTCCTTAAGCCGCTGTGTGTAGGCCAGCGATACATACTGAGAACCTTTATCACTGTGATGGACCGTGCCGGACGGTCGACGGGCCCATAACGCCTGCTCCAGTGCATCCAGCACGAATGTCGTTTCCATGGACGATGAGACCCGCCACCCCACGATGCATCCGGCAAACACATCAATGATGAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTTCCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGCCATGAGACGTGCCACAGTGCATCTGGCCACTCTGATACCTTCCCGTAACAACTGACGCCAGACTTTACACCGTATACCTTGTGATTTTCATCGTATACGCGCTGTATCTCTTTCTTCAGCCAGTCATCGCGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTGACAGTGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATAGCGGTCCGACCCCGTACTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTTTCACGCTCCAGCTCTTTCAGACGCTGACGTTCAGCGGTGGTGAGCCCTCCATCACCGCCCCCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATCTTTGGAGCAATGGAACAAATTGTCGCCCATTGTGAGTCATATTCGCCCTGACTTTCCAGAACCATACGGACTGCCCGTTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTGTTTACCTCTTTCTCAGGAAGTTTAGTCTCCAGGATTCCCGGGGCGGTTCAG	NA	NA	NA	NA
AUU33715.1|63807_65262_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33716.1|65410_65641_-	hypothetical protein	NA	NA	NA	NA	NA
AUU33717.1|65710_66919_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AUU33718.1|66899_67118_-	hypothetical protein	NA	NA	NA	NA	NA
AUU33719.1|67172_68446_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	98.7	2.0e-176
AUU33720.1|68502_68637_+	invasion protein	NA	NA	NA	NA	NA
AUU33721.1|68792_69083_+	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
AUU33722.1|69073_69556_+	N-acetyltransferase	NA	NA	NA	NA	NA
AUU33723.1|70625_71793_+|transposase	transposase	transposase	Q716C2	Shigella_phage	99.3	8.4e-182
AUU33835.1|71817_72390_-	T3SS effector protein NleE	NA	NA	NA	NA	NA
AUU33724.1|73776_73914_-	non-LEE-encoded type III effector F	NA	NA	NA	NA	NA
AUU33836.1|74875_75823_+|protease	outer membrane protease PgtE	protease	NA	NA	NA	NA
AUU33837.1|77552_78236_+	OspB	NA	A0A0P0ZCT1	Stx2-converting_phage	34.2	5.8e-26
AUU33725.1|78564_79305_+	phosphatase PAP2 family protein	NA	A0A1B1IUP6	uncultured_Mediterranean_phage	28.9	2.6e-11
AUU33726.1|79657_80536_-	OspC family protein	NA	NA	NA	NA	NA
AUU33838.1|83107_83305_+	helicase	NA	NA	NA	NA	NA
AUU33727.1|83386_85096_-	hypothetical protein	NA	NA	NA	NA	NA
AUU33728.1|85527_86247_-	phosphothreonine lyase OspF	NA	NA	NA	NA	NA
AUU33729.1|87278_87857_-	hypothetical protein	NA	NA	NA	NA	NA
AUU33839.1|87886_88021_+	sensor dcuS domain protein	NA	NA	NA	NA	NA
AUU33730.1|89178_89427_-|transposase	transposase	transposase	NA	NA	NA	NA
AUU33731.1|89526_89811_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AUU33840.1|89821_91150_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AUU33732.1|91572_91920_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	75.7	3.4e-46
AUU33733.1|94808_95486_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33734.1|95549_95780_-	hypothetical protein	NA	NA	NA	NA	NA
AUU33735.1|95967_96192_-	hypothetical protein	NA	NA	NA	NA	NA
AUU33736.1|96247_96436_-	hypothetical protein	NA	NA	NA	NA	NA
AUU33737.1|96683_97160_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33738.1|98901_99015_+	glutathione S-transferase	NA	NA	NA	NA	NA
AUU33739.1|102521_102728_+	hypothetical protein	NA	A0A0P0ZEB3	Stx2-converting_phage	57.1	1.0e-05
AUU33740.1|102865_104065_+	ParA family protein	NA	Q71TL9	Escherichia_phage	75.1	2.0e-175
AUU33741.1|104064_105045_+	chromosome partitioning protein ParB	NA	Q38420	Escherichia_phage	58.2	5.0e-95
AUU33742.1|109673_109862_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33743.1|109871_111071_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AUU33744.1|112008_112419_+|transposase	transposase	transposase	A0A2L1IVB6	Escherichia_phage	97.2	4.9e-52
AUU33841.1|112360_113149_-	Virulence regulon transcriptional activator VirF	NA	NA	NA	NA	NA
AUU33745.1|114160_114427_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33746.1|114797_115994_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUU33747.1|116329_118021_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
AUU33748.1|120686_120953_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33749.1|121341_123069_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
AUU33750.1|123399_123588_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33751.1|123597_124797_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AUU33752.1|128373_130071_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
AUU33753.1|130498_132223_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
AUU33754.1|135898_136763_+|transposase	IS5/IS1182 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	48.6	1.4e-19
AUU33755.1|136950_137208_+	HNH endonuclease	NA	NA	NA	NA	NA
AUU33756.1|138104_139517_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33757.1|139845_141543_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33758.1|141659_141782_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AUU33759.1|141945_142218_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33760.1|142198_142948_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AUU33761.1|143017_143722_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33762.1|143739_144105_+	hypothetical protein	NA	Q1MVP5	Enterobacteria_phage	36.4	6.5e-16
AUU33763.1|145599_146756_-|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	5.2e-67
AUU33764.1|147276_147762_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUU33765.1|147749_148034_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
AUU33766.1|148665_148872_-	hypothetical protein	NA	NA	NA	NA	NA
AUU33767.1|149102_149237_-	arylsulfatase	NA	NA	NA	NA	NA
AUU33768.1|149352_150954_-|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.0	9.2e-147
AUU33769.1|150973_151321_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	72.9	2.7e-43
AUU33770.1|151317_151992_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
AUU33771.1|152564_154019_+	hypothetical protein	NA	NA	NA	NA	NA
AUU33772.1|154095_154374_-	hypothetical protein	NA	NA	NA	NA	NA
AUU33773.1|154356_155512_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	9.8e-66
