The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026070	Staphylococcus aureus strain NRS133 chromosome, complete genome	2740361	39309	47782	2740361		Synechococcus_phage(33.33%)	9	NA	NA
AUU57582.1|39309_39876_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
AUU57583.1|39878_40907_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
AUU57584.1|40899_42384_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
AUU57585.1|42362_44552_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
AUU57586.1|44544_45216_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AUU57587.1|45217_45481_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AUU57588.1|45480_46185_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AUU57589.1|46188_47313_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AUU57590.1|47299_47782_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 2
CP026070	Staphylococcus aureus strain NRS133 chromosome, complete genome	2740361	66677	94009	2740361	bacteriocin,protease,holin	Staphylococcus_phage(25.0%)	31	NA	NA
AUU57607.1|66677_67688_+|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	32.3	6.2e-16
AUU57608.1|67769_68951_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
AUU57609.1|68988_69318_+	staphostatin B	NA	NA	NA	NA	NA
AUU57610.1|69556_70378_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
AUU57611.1|70370_71174_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
AUU57612.1|71160_72834_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	NA	NA	NA	NA	NA
AUU57613.1|72820_74032_-	isochorismate synthase	NA	NA	NA	NA	NA
AUU57614.1|74108_74213_-	hypothetical protein	NA	NA	NA	NA	NA
AUU57615.1|74363_75302_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
AUU57616.1|75352_75904_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUU57617.1|75993_76284_+	NINE protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
AUU57618.1|76347_76479_+	hypothetical protein	NA	NA	NA	NA	NA
AUU57619.1|76524_77484_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUU57620.1|77971_78328_+	DoxX family protein	NA	NA	NA	NA	NA
AUU57621.1|78416_79898_-	glycosyl transferase family 1	NA	NA	NA	NA	NA
AUU57622.1|79903_80191_-	hypothetical protein	NA	NA	NA	NA	NA
AUU57623.1|80469_80760_+	hypothetical protein	NA	NA	NA	NA	NA
AUU57624.1|80847_81489_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
AUU57625.1|81485_81806_-	hypothetical protein	NA	NA	NA	NA	NA
AUU57626.1|81808_83773_-	DUF1430 domain-containing protein	NA	NA	NA	NA	NA
AUU60161.1|83816_84089_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
AUU57627.1|84098_84200_-	hypothetical protein	NA	NA	NA	NA	NA
AUU60162.1|84738_84816_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AUU57628.1|85116_85719_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AUU57629.1|85733_85910_-	DUF2187 domain-containing protein	NA	NA	NA	NA	NA
AUU57630.1|86108_87095_+	lipoate--protein ligase	NA	NA	NA	NA	NA
AUU57631.1|87175_87394_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
AUU57632.1|87603_88173_+	competence protein ComK	NA	NA	NA	NA	NA
AUU57633.1|88659_90171_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
AUU57634.1|90309_91668_-	Ktr system potassium uptake protein D	NA	NA	NA	NA	NA
AUU57635.1|91684_94009_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.1	8.1e-11
>prophage 3
CP026070	Staphylococcus aureus strain NRS133 chromosome, complete genome	2740361	292187	306918	2740361		uncultured_Caudovirales_phage(50.0%)	18	NA	NA
AUU57831.1|292187_292949_-	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
AUU57832.1|292945_293902_-	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AUU60166.1|293888_294860_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
AUU57833.1|294898_295054_-	hypothetical protein	NA	NA	NA	NA	NA
AUU57834.1|295330_295435_-	hypothetical protein	NA	NA	NA	NA	NA
AUU57835.1|295567_296539_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AUU57836.1|296656_298762_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AUU57837.1|298724_299123_-	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AUU57838.1|299272_299539_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AUU57839.1|299923_300790_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AUU57840.1|300809_301310_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AUU57841.1|301339_301585_+	hypothetical protein	NA	NA	NA	NA	NA
AUU57842.1|301650_303156_+	peptide ABC transporter permease	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AUU57843.1|303233_303335_-	hypothetical protein	NA	NA	NA	NA	NA
AUU57844.1|303425_304343_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
AUU57845.1|304755_304854_-	hypothetical protein	NA	NA	NA	NA	NA
AUU57846.1|304966_305509_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AUU57847.1|305859_306918_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 4
CP026070	Staphylococcus aureus strain NRS133 chromosome, complete genome	2740361	318890	326710	2740361		Pandoravirus(16.67%)	10	NA	NA
AUU57857.1|318890_320042_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
AUU57858.1|320025_320619_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AUU57859.1|320969_321638_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AUU57860.1|321639_322059_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AUU57861.1|322062_322776_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AUU57862.1|322874_323459_+	hypothetical protein	NA	NA	NA	NA	NA
AUU57863.1|323738_324179_+	hypothetical protein	NA	NA	NA	NA	NA
AUU57864.1|324520_324994_+	DoxX family protein	NA	NA	NA	NA	NA
AUU57865.1|324968_325655_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUU57866.1|325654_326710_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
>prophage 5
CP026070	Staphylococcus aureus strain NRS133 chromosome, complete genome	2740361	1767461	1825378	2740361	terminase,protease,head,capsid,holin,tail,portal,integrase	Staphylococcus_phage(96.05%)	85	1761131:1761147	1783851:1783867
1761131:1761147	attL	TATAATTTTTAATAATG	NA	NA	NA	NA
AUU59222.1|1767461_1768205_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AUU59223.1|1768379_1768664_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
AUU59224.1|1768739_1770356_+	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
AUU59225.1|1771057_1771270_+	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
AUU59226.1|1771266_1771857_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
AUU59227.1|1772174_1772612_+	hypothetical protein	NA	NA	NA	NA	NA
AUU59228.1|1772717_1773161_+	N-acetyltransferase	NA	NA	NA	NA	NA
AUU59229.1|1774013_1775321_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
AUU59230.1|1775481_1776393_+	ferrichrome ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUU59231.1|1776454_1777300_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUU59232.1|1777671_1778895_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AUU59233.1|1779329_1780385_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
AUU59234.1|1780406_1781423_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
AUU59235.1|1781660_1782485_-	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
AUU59236.1|1782541_1783579_-|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
AUU59237.1|1783686_1784301_+	ATPase	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
1783851:1783867	attR	TATAATTTTTAATAATG	NA	NA	NA	NA
AUU59238.1|1784297_1784444_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
AUU59239.1|1784860_1785631_-	transcriptional regulator	NA	A0A1P8L6G7	Staphylococcus_phage	100.0	6.2e-141
AUU59240.1|1785789_1786014_+	DUF739 domain-containing protein	NA	A7TW90	Staphylococcus_phage	100.0	4.5e-36
AUU59241.1|1786031_1786292_+	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
AUU59242.1|1786315_1786855_-	hypothetical protein	NA	Q8SDN0	Staphylococcus_phage	100.0	1.7e-97
AUU59243.1|1787676_1787874_+	hypothetical protein	NA	Q8SDM8	Staphylococcus_phage	100.0	7.0e-33
AUU59244.1|1787904_1788045_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
AUU59245.1|1788059_1788692_-	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
AUU59246.1|1788750_1789071_+	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
AUU59247.1|1789067_1789229_+	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
AUU59248.1|1789321_1789582_+	hypothetical protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
AUU59249.1|1789591_1789813_+	DUF2483 domain-containing protein	NA	A0A1W6JQ25	Staphylococcus_phage	100.0	9.3e-34
AUU59250.1|1789805_1790585_+	chromosomal replication initiator DnaA	NA	A0A1W6JPW0	Staphylococcus_phage	100.0	3.3e-142
AUU59251.1|1790615_1791167_+	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
AUU59252.1|1791179_1791851_+	hypothetical protein	NA	Q8SDM2	Staphylococcus_phage	100.0	4.4e-127
AUU59253.1|1791989_1792271_-	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
AUU60221.1|1792336_1793107_+	replication protein	NA	A0A1W6JQ00	Staphylococcus_phage	100.0	6.4e-122
AUU59254.1|1793116_1793896_+	DNA replication protein DnaC	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
AUU59255.1|1793889_1794048_+	hypothetical protein	NA	A1KX06	Staphylococcus_virus	100.0	4.5e-22
AUU59256.1|1794060_1794282_+	DUF3269 domain-containing protein	NA	A0A0N9BAW8	Staphylococcus_phage	100.0	9.9e-36
AUU59257.1|1794292_1794697_+	hypothetical protein	NA	A0A0H4ISQ5	Staphylococcus_phage	100.0	9.0e-67
AUU59258.1|1794701_1794887_+	DUF3113 domain-containing protein	NA	A0A1W6JPY2	Staphylococcus_phage	100.0	8.3e-28
AUU59259.1|1794887_1795259_+	hypothetical protein	NA	A0A1W6JPY5	Staphylococcus_phage	100.0	7.5e-52
AUU59260.1|1795259_1795508_+	hypothetical protein	NA	A0A1W6JPX8	Staphylococcus_phage	100.0	2.5e-43
AUU59261.1|1795571_1795919_+	hypothetical protein	NA	A0A1W6JPZ1	Staphylococcus_phage	100.0	5.9e-59
AUU59262.1|1795915_1796305_+	acetyltransferase	NA	A0A1W6JPV7	Staphylococcus_phage	100.0	3.5e-68
AUU59263.1|1796297_1796552_+	hypothetical protein	NA	A0A1W6JQ06	Staphylococcus_phage	100.0	1.9e-38
AUU59264.1|1796514_1796709_+	hypothetical protein	NA	M1SVE4	Staphylococcus_phage	95.1	5.9e-24
AUU59265.1|1796701_1797238_+	dUTPase	NA	A0A1W6JQ21	Staphylococcus_phage	100.0	9.4e-96
AUU59266.1|1797274_1797448_+	hypothetical protein	NA	A0A1W6JQ45	Staphylococcus_phage	100.0	4.7e-25
AUU59267.1|1797464_1797671_+	DUF1381 domain-containing protein	NA	A0A1W6JPY0	Staphylococcus_phage	100.0	1.9e-20
AUU59268.1|1797667_1797817_+	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AUU59269.1|1797816_1798017_+	DUF1514 domain-containing protein	NA	D2JLD9	Staphylococcus_phage	100.0	1.4e-28
AUU59270.1|1797920_1798133_-	hypothetical protein	NA	NA	NA	NA	NA
AUU59271.1|1798039_1798510_+	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	100.0	3.7e-72
AUU59272.1|1798624_1799077_+	hypothetical protein	NA	Q8SDL2	Staphylococcus_phage	100.0	3.6e-80
AUU60222.1|1799092_1799437_+	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
AUU59273.1|1799566_1800034_+|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
AUU59274.1|1800036_1801731_+|terminase	phage terminase large subunit	terminase	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
AUU59275.1|1801705_1801945_+	hypothetical protein	NA	A7TWC1	Staphylococcus_phage	100.0	7.0e-35
AUU60223.1|1802010_1803201_+|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	1.8e-224
AUU59276.1|1803193_1803778_+|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
AUU59277.1|1803865_1805113_+|capsid	phage major capsid protein	capsid	Q8SDK8	Staphylococcus_phage	100.0	2.8e-215
AUU59278.1|1805148_1805307_+	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
AUU59279.1|1805315_1805648_+|head,tail	phage head-tail adapter protein	head,tail	Q8SDK7	Staphylococcus_phage	100.0	3.7e-58
AUU59280.1|1805634_1805970_+|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
AUU59281.1|1805969_1806347_+	hypothetical protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
AUU59282.1|1806343_1806724_+	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
AUU59283.1|1806724_1807678_+|tail	phage tail protein	tail	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
AUU59284.1|1807742_1808189_+	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
AUU59285.1|1808248_1808371_+	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
AUU59286.1|1808426_1813079_+|tail	phage tail tape measure protein	tail	Q8SDK4	Staphylococcus_phage	100.0	0.0e+00
AUU59287.1|1813078_1814569_+|tail	phage tail protein	tail	D2JLF8	Staphylococcus_phage	100.0	8.2e-299
AUU59288.1|1814584_1818370_+	hypothetical protein	NA	A0A1P8L6B8	Staphylococcus_phage	100.0	0.0e+00
AUU59289.1|1818359_1818512_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
AUU59290.1|1818558_1818846_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AUU59291.1|1818903_1819200_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
AUU59292.1|1819349_1819526_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
AUU59293.1|1819578_1819686_-	hypothetical protein	NA	NA	NA	NA	NA
AUU59294.1|1819737_1819992_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AUU59295.1|1820003_1820759_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AUU59296.1|1820949_1821441_+	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	100.0	3.6e-86
AUU59297.1|1821967_1822426_+	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
AUU59298.1|1822520_1822970_-	chemotaxis inhibitory protein	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
AUU59299.1|1823652_1824003_+	inhibitor	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
AUU59300.1|1824055_1824316_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
AUU59301.1|1824294_1824603_-	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	77.5	9.3e-24
AUU59302.1|1824626_1824806_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
AUU59303.1|1825177_1825378_-	hypothetical protein	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
>prophage 6
CP026070	Staphylococcus aureus strain NRS133 chromosome, complete genome	2740361	1914970	2016014	2740361	transposase,protease,tRNA,bacteriocin	Staphylococcus_phage(89.83%)	105	NA	NA
AUU59388.1|1914970_1916173_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
AUU59389.1|1916665_1917727_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
AUU59390.1|1917984_1919442_+	ABC transporter permease	NA	NA	NA	NA	NA
AUU59391.1|1919428_1920157_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
AUU59392.1|1920292_1921435_+	epoxyqueuosine reductase	NA	NA	NA	NA	NA
AUU59393.1|1921439_1921910_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AUU59394.1|1922068_1922668_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
AUU59395.1|1922692_1922845_+	hypothetical protein	NA	NA	NA	NA	NA
AUU59396.1|1922909_1923116_-	hypothetical protein	NA	NA	NA	NA	NA
AUU59397.1|1923140_1923503_-	hypothetical protein	NA	NA	NA	NA	NA
AUU59398.1|1923621_1924017_+	hypothetical protein	NA	NA	NA	NA	NA
AUU59399.1|1924212_1925598_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AUU59400.1|1926060_1926882_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AUU59401.1|1927044_1928157_+	histidine kinase	NA	NA	NA	NA	NA
AUU59402.1|1928178_1928802_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUU59403.1|1929157_1929622_+	transcriptional regulator	NA	NA	NA	NA	NA
AUU59404.1|1929800_1930925_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AUU59405.1|1930993_1931338_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
AUU59406.1|1931720_1931819_+	hypothetical protein	NA	NA	NA	NA	NA
AUU59407.1|1932109_1933306_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
AUU59408.1|1933295_1936232_+	DNA repair protein Rad50	NA	NA	NA	NA	NA
AUU59409.1|1936228_1937170_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
AUU59410.1|1937290_1938253_-	foldase	NA	NA	NA	NA	NA
AUU59411.1|1938457_1939015_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
AUU59412.1|1939747_1940113_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
AUU59413.1|1940254_1940677_-	HIT family protein	NA	NA	NA	NA	NA
AUU59414.1|1940810_1941551_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
AUU59415.1|1941543_1942767_+	multidrug ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUU59416.1|1942890_1943394_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
AUU59417.1|1943556_1943667_+	hypothetical protein	NA	NA	NA	NA	NA
AUU59418.1|1943656_1944694_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AUU59419.1|1944751_1945675_+	ferrochelatase	NA	NA	NA	NA	NA
AUU59420.1|1945698_1947099_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
AUU59421.1|1947100_1947328_-	hypothetical protein	NA	NA	NA	NA	NA
AUU59422.1|1947421_1947976_+	serine hydrolase family protein	NA	NA	NA	NA	NA
AUU59423.1|1950432_1951221_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
AUU59424.1|1951233_1951773_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
AUU60228.1|1952601_1953507_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	99.7	3.6e-172
AUU59425.1|1953508_1954492_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
AUU59426.1|1954733_1954877_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
AUU59427.1|1954978_1955170_-	hypothetical protein	NA	NA	NA	NA	NA
AUU59428.1|1955613_1955757_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
AUU59429.1|1955821_1958815_+|bacteriocin	bacteriocin biosynthesis protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
AUU59430.1|1958807_1960052_+	lanthionine synthetase	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
AUU59431.1|1960067_1960586_+	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
AUU59432.1|1960595_1961969_+	peptidase S8	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
AUU59433.1|1961991_1962684_+	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
AUU59434.1|1962680_1963442_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
AUU59435.1|1963438_1964137_+	BsaG protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
AUU59436.1|1964610_1965177_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
AUU59437.1|1965486_1965705_+	hypothetical protein	NA	NA	NA	NA	NA
AUU59438.1|1966140_1966848_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
AUU59439.1|1966972_1967695_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
AUU59440.1|1967752_1968472_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
AUU59441.1|1968592_1969312_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AUU59442.1|1969260_1969368_-	hypothetical protein	NA	NA	NA	NA	NA
AUU59443.1|1969469_1970186_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
AUU59444.1|1970336_1971056_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
AUU59445.1|1971120_1971255_+	hypothetical protein	NA	NA	NA	NA	NA
AUU59446.1|1971235_1972975_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
AUU59447.1|1972967_1974167_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	100.0	8.5e-230
AUU59448.1|1975016_1979129_+	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
AUU60229.1|1979666_1980026_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
AUU59449.1|1980373_1980475_-	hypothetical protein	NA	NA	NA	NA	NA
AUU59450.1|1980895_1981039_+	hypothetical protein	NA	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
AUU59451.1|1981241_1981451_+|transposase	transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	100.0	1.4e-31
AUU59452.1|1981642_1982026_+	hypothetical protein	NA	NA	NA	NA	NA
AUU59453.1|1982036_1982213_+	hypothetical protein	NA	NA	NA	NA	NA
AUU59454.1|1982214_1982400_+	hypothetical protein	NA	NA	NA	NA	NA
AUU59455.1|1982513_1983155_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
AUU59456.1|1983372_1983924_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
AUU59457.1|1984021_1984366_-	DUF3969 domain-containing protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
AUU59458.1|1984406_1985033_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
AUU59459.1|1985108_1986104_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
AUU59460.1|1986184_1986835_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
AUU60230.1|1987137_1987593_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
AUU59461.1|1987751_1989230_+	2-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
AUU59462.1|1989234_1990236_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
AUU59463.1|1990232_1990490_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AUU59464.1|1990555_1991029_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
AUU60231.1|1991033_1991780_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
AUU59465.1|1992154_1992640_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
AUU59466.1|1992775_1994368_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AUU59467.1|1994738_1995932_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AUU59468.1|1996056_1996965_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
AUU59469.1|1997176_1998010_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
AUU59470.1|2000093_2000447_-	camphor resistance protein CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
AUU59471.1|2000443_2000809_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AUU59472.1|2001064_2001367_-	hypothetical protein	NA	NA	NA	NA	NA
AUU59473.1|2001626_2002340_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AUU59474.1|2002779_2003415_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AUU59475.1|2003710_2004154_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
AUU59476.1|2004140_2004584_-	competence protein ComK	NA	NA	NA	NA	NA
AUU59477.1|2004696_2005167_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	3.3e-81
AUU59478.1|2005365_2005590_+	hypothetical protein	NA	NA	NA	NA	NA
AUU59479.1|2005865_2006720_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AUU59480.1|2007014_2007410_-	protein ArsC	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
AUU59481.1|2007427_2008720_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	1.9e-227
AUU59482.1|2008719_2009034_-	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
AUU59483.1|2009556_2011059_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
AUU59484.1|2011551_2012583_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
AUU59485.1|2012589_2013222_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
AUU59486.1|2013232_2014414_+	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
AUU59487.1|2014426_2014891_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
AUU59488.1|2015012_2016014_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
>prophage 7
CP026070	Staphylococcus aureus strain NRS133 chromosome, complete genome	2740361	2019174	2031920	2740361	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
AUU59492.1|2019174_2019738_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AUU59493.1|2019734_2020688_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AUU59494.1|2020797_2021979_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
AUU59495.1|2022266_2024684_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
AUU59496.1|2024705_2025017_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
AUU59497.1|2025359_2031920_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	3.4e-304
>prophage 8
CP026070	Staphylococcus aureus strain NRS133 chromosome, complete genome	2740361	2157693	2166736	2740361	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AUU59612.1|2157693_2158698_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AUU59613.1|2158699_2159725_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AUU59614.1|2159747_2160887_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AUU59615.1|2160905_2161166_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AUU59616.1|2161440_2163720_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AUU59617.1|2163922_2166196_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
AUU59618.1|2166217_2166736_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 9
CP026070	Staphylococcus aureus strain NRS133 chromosome, complete genome	2740361	2235874	2244186	2740361	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
AUU59688.1|2235874_2237674_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
AUU59689.1|2237897_2239004_+	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AUU59690.1|2239134_2239812_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AUU59691.1|2239814_2240915_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AUU59692.1|2241028_2242375_+	DEAD/DEAH box family ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
AUU59693.1|2242384_2243275_+	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
AUU59694.1|2243400_2244186_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
