The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	2814696	83800	98441	2814696		uncultured_Caudovirales_phage(50.0%)	18	NA	NA
AUU77189.1|83800_84562_-	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
AUU77190.1|84558_85515_-	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AUU79756.1|85501_86473_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
AUU77191.1|86511_86667_-	hypothetical protein	NA	NA	NA	NA	NA
AUU77192.1|86847_87819_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AUU77193.1|87936_90042_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AUU77194.1|90004_90403_-	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AUU77195.1|90552_90819_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AUU77196.1|91203_92070_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AUU77197.1|92089_92590_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AUU77198.1|92619_92865_+	hypothetical protein	NA	NA	NA	NA	NA
AUU77199.1|92930_94436_+	peptide ABC transporter permease	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AUU77200.1|94513_94615_-	hypothetical protein	NA	NA	NA	NA	NA
AUU77201.1|94705_95623_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
AUU77202.1|95891_96059_-	nitrogen fixation protein NifR	NA	NA	NA	NA	NA
AUU77203.1|96234_96330_-	hypothetical protein	NA	NA	NA	NA	NA
AUU77204.1|96501_97044_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AUU77205.1|97382_98441_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 2
CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	2814696	110412	118233	2814696		Pandoravirus(16.67%)	10	NA	NA
AUU77215.1|110412_111564_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	4.6e-23
AUU77216.1|111547_112141_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AUU77217.1|112491_113160_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AUU77218.1|113161_113581_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AUU77219.1|113584_114298_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AUU77220.1|114396_114981_+	hypothetical protein	NA	NA	NA	NA	NA
AUU77221.1|115260_115701_+	hypothetical protein	NA	NA	NA	NA	NA
AUU77222.1|116043_116517_+	DoxX family protein	NA	NA	NA	NA	NA
AUU77223.1|116491_117178_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUU77224.1|117177_118233_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 3
CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	2814696	1613901	1712098	2814696	coat,head,portal,capsid,protease,tail,terminase,holin,integrase	Staphylococcus_phage(87.23%)	128	1637486:1637503	1662306:1662323
AUU78610.1|1613901_1614186_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
AUU78611.1|1614261_1615878_+	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
AUU78612.1|1615946_1617119_-|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	96.2	5.8e-215
AUU78613.1|1617132_1617807_-	XRE family transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
AUU78614.1|1617979_1618198_+	XRE family transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
AUU78615.1|1618202_1618520_+	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
AUU78616.1|1618516_1618663_+	pathogenicity island protein	NA	NA	NA	NA	NA
AUU78617.1|1618655_1618865_+	pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	94.2	2.9e-29
AUU78618.1|1618867_1619194_+	DUF1474 domain-containing protein	NA	Q4ZE75	Staphylococcus_phage	89.8	1.5e-48
AUU78619.1|1619258_1620128_+	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	96.2	1.5e-164
AUU78620.1|1620141_1621851_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	92.8	1.4e-302
AUU78621.1|1622160_1622541_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	96.8	1.7e-67
AUU78622.1|1622537_1623179_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	93.0	7.2e-111
AUU78623.1|1623628_1623970_+	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
AUU78624.1|1623981_1624560_+	pathogenicity island protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
AUU78625.1|1624577_1624796_+	hypothetical protein	NA	NA	NA	NA	NA
AUU78626.1|1624846_1625374_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
AUU78627.1|1625376_1625718_+	pathogenicity island protein	NA	A0A1W6JQM3	Staphylococcus_phage	99.1	1.4e-57
AUU78628.1|1625714_1626284_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	7.9e-101
AUU78629.1|1626438_1627143_-	toxin	NA	NA	NA	NA	NA
AUU78630.1|1628021_1628582_-	hypothetical protein	NA	Q4ZBG8	Staphylococcus_virus	68.1	5.4e-62
AUU78631.1|1629368_1630169_+	enterotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.5	6.1e-51
AUU78632.1|1630337_1631060_-	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	34.9	2.1e-26
AUU78633.1|1632076_1633384_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
AUU78634.1|1633827_1635051_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AUU78635.1|1635486_1636542_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
AUU78636.1|1636563_1637580_+	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
1637486:1637503	attL	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
AUU78637.1|1637817_1638642_-	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
AUU78638.1|1638698_1639736_-|integrase	site-specific integrase	integrase	Q38086	Staphylococcus_phage	98.6	1.4e-175
AUU78639.1|1639798_1640041_-	hypothetical protein	NA	NA	NA	NA	NA
AUU78640.1|1640051_1641035_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AUU78641.1|1641134_1641317_-	hypothetical protein	NA	A0A2I6PDF8	Staphylococcus_phage	100.0	6.9e-27
AUU78642.1|1641520_1641862_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
AUU78643.1|1641867_1642800_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
AUU78644.1|1642815_1643529_-	XRE family transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
AUU78645.1|1643662_1643926_+	XRE family transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
AUU78646.1|1643941_1644157_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
AUU78647.1|1644145_1644475_-	hypothetical protein	NA	M9NS98	Staphylococcus_phage	98.2	5.1e-52
AUU78648.1|1644525_1645278_+	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
AUU78649.1|1645293_1645491_+	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
AUU78650.1|1645477_1645858_-	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
AUU78651.1|1645912_1646236_+	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
AUU78652.1|1646232_1646394_+	DUF1270 domain-containing protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
AUU78653.1|1646488_1646791_+	hypothetical protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
AUU78654.1|1646795_1647056_+	DUF1108 domain-containing protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
AUU78655.1|1647064_1647328_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
AUU78656.1|1647336_1649280_+	ATPase	NA	A0A1P8L6F1	Staphylococcus_phage	100.0	0.0e+00
AUU78657.1|1649281_1650202_+	recombinase	NA	A0A1P8L6F6	Staphylococcus_phage	100.0	5.1e-166
AUU78658.1|1650282_1650900_+	MBL fold metallo-hydrolase	NA	A0A1P8L6F7	Staphylococcus_phage	100.0	1.2e-86
AUU78659.1|1650900_1651371_+	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
AUU78660.1|1651400_1652294_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
AUU78661.1|1652300_1652519_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
AUU78662.1|1652527_1652932_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	100.0	8.4e-73
AUU78663.1|1652944_1653316_+	hypothetical protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
AUU78664.1|1653315_1653573_+	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
AUU78665.1|1653569_1653818_+	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	96.3	7.5e-40
AUU78666.1|1653832_1654078_+	hypothetical protein	NA	Q8SDV5	Staphylococcus_phage	95.1	1.7e-36
AUU78667.1|1654074_1654611_+	dUTPase	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
AUU78668.1|1654647_1654893_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	98.8	2.5e-35
AUU78669.1|1654889_1655096_+	DUF1381 domain-containing protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
AUU78670.1|1655092_1655242_+	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AUU78671.1|1655241_1655442_+	DUF1514 domain-containing protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
AUU78672.1|1655469_1655886_+	transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AUU78673.1|1656117_1656417_+	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
AUU78674.1|1656548_1656893_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AUU78675.1|1656889_1658551_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
AUU78676.1|1658566_1659754_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
AUU78677.1|1659737_1660475_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
AUU78678.1|1660498_1661644_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
AUU78679.1|1661663_1661948_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
AUU78680.1|1661937_1662222_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
AUU78681.1|1662205_1662568_+|head,tail	phage head-tail adapter protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
1662306:1662323	attR	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
AUU78682.1|1662564_1662969_+	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
AUU78683.1|1662965_1663373_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
AUU78684.1|1663373_1664018_+|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
AUU78685.1|1664059_1664284_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
AUU78686.1|1664333_1664684_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
AUU78687.1|1664928_1669458_+|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	97.0	0.0e+00
AUU78688.1|1669454_1670939_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.8	4.5e-297
AUU78689.1|1670954_1674737_+	hypothetical protein	NA	A0A068A201	Staphylococcus_phage	99.6	0.0e+00
AUU78690.1|1674729_1674882_+	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
AUU78691.1|1674927_1675215_+	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
AUU78692.1|1675270_1675645_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
AUU78693.1|1676056_1676839_+	exotoxin	NA	A0A075M4C7	Staphylococcus_phage	99.6	1.6e-149
AUU79809.1|1677041_1677218_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
AUU78694.1|1677270_1677378_-	hypothetical protein	NA	NA	NA	NA	NA
AUU78695.1|1677429_1677684_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AUU78696.1|1677695_1678451_+	CHAP domain-containing protein	NA	A0A075LZV3	Staphylococcus_phage	100.0	1.2e-152
AUU78697.1|1678641_1679133_+	staphylokinase	NA	A0A075LYD3	Staphylococcus_phage	100.0	8.0e-86
AUU78698.1|1680208_1680658_-	chemotaxis inhibitory protein	NA	A0A075LZI2	Staphylococcus_phage	100.0	8.7e-79
AUU78699.1|1681340_1681691_+	inhibitor	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
AUU78700.1|1681743_1682004_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
AUU78701.1|1682007_1682295_-	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	75.5	1.1e-18
AUU78702.1|1682318_1682498_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
AUU78703.1|1682869_1683070_-	hypothetical protein	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
AUU78704.1|1683455_1684886_+	protein map	NA	NA	NA	NA	NA
AUU78705.1|1684900_1685191_+	MAP domain-containing protein	NA	NA	NA	NA	NA
AUU78706.1|1685469_1686756_-	aspartate aminotransferase	NA	NA	NA	NA	NA
AUU78707.1|1686955_1687054_+	hypothetical protein	NA	NA	NA	NA	NA
AUU78708.1|1687296_1687473_+	hypothetical protein	NA	NA	NA	NA	NA
AUU78709.1|1687730_1688111_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUU78710.1|1688107_1689004_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
AUU78711.1|1689004_1689685_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
AUU78712.1|1689681_1690554_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
AUU78713.1|1690553_1691294_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
AUU78714.1|1691359_1691923_-	thioredoxin family protein	NA	NA	NA	NA	NA
AUU78715.1|1692043_1692568_+	hypothetical protein	NA	NA	NA	NA	NA
AUU78716.1|1692627_1693185_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AUU78717.1|1693181_1694024_+	hypothetical protein	NA	NA	NA	NA	NA
AUU78718.1|1694080_1695121_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
AUU78719.1|1695571_1695745_+	hypothetical protein	NA	NA	NA	NA	NA
AUU78720.1|1696317_1696719_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
AUU78721.1|1696988_1698017_+	hypothetical protein	NA	NA	NA	NA	NA
AUU78722.1|1698136_1699516_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUU78723.1|1699567_1699741_+	hypothetical protein	NA	NA	NA	NA	NA
AUU78724.1|1699933_1700863_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
AUU78725.1|1700915_1701476_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
AUU78726.1|1701844_1702942_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
AUU78727.1|1703146_1704709_+	sodium-dependent dicarboxylate transporter SdcS	NA	NA	NA	NA	NA
AUU78728.1|1704719_1704827_-	hypothetical protein	NA	NA	NA	NA	NA
AUU78729.1|1704898_1705693_-	ACT domain-containing protein	NA	NA	NA	NA	NA
AUU78730.1|1705712_1706789_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
AUU78731.1|1706972_1708442_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
AUU78732.1|1708434_1709256_+	NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
AUU78733.1|1709526_1710129_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
AUU78734.1|1710109_1710283_+	NETI motif-containing protein	NA	NA	NA	NA	NA
AUU78735.1|1710574_1710901_-	staphostatin A	NA	NA	NA	NA	NA
AUU78736.1|1710931_1712098_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
>prophage 4
CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	2814696	1772093	1879259	2814696	tRNA,transposase,protease	Staphylococcus_phage(89.29%)	104	NA	NA
AUU78786.1|1772093_1773413_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
AUU78787.1|1773996_1775058_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
AUU78788.1|1775315_1776773_+	glutamate ABC transporter permease	NA	NA	NA	NA	NA
AUU78789.1|1776759_1777488_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
AUU78790.1|1777623_1778766_+	epoxyqueuosine reductase	NA	NA	NA	NA	NA
AUU78791.1|1778770_1779241_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AUU78792.1|1779399_1779999_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
AUU78793.1|1780023_1780176_+	hypothetical protein	NA	NA	NA	NA	NA
AUU78794.1|1780723_1781119_+	hypothetical protein	NA	NA	NA	NA	NA
AUU78795.1|1781314_1782700_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AUU78796.1|1783152_1783974_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AUU78797.1|1784136_1785249_+	histidine kinase	NA	NA	NA	NA	NA
AUU78798.1|1785270_1785894_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUU78799.1|1786249_1786714_+	transcriptional regulator	NA	NA	NA	NA	NA
AUU78800.1|1786892_1788017_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AUU78801.1|1788085_1788430_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
AUU78802.1|1788968_1789067_+	hypothetical protein	NA	NA	NA	NA	NA
AUU78803.1|1789357_1790554_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
AUU78804.1|1790543_1793480_+	DNA repair protein Rad50	NA	NA	NA	NA	NA
AUU78805.1|1793476_1794418_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
AUU78806.1|1794538_1795501_-	foldase	NA	NA	NA	NA	NA
AUU78807.1|1795705_1796263_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
AUU78808.1|1796997_1797363_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
AUU78809.1|1797504_1797927_-	HIT family protein	NA	NA	NA	NA	NA
AUU78810.1|1798060_1798801_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
AUU78811.1|1798793_1800017_+	multidrug ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUU78812.1|1800140_1800644_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
AUU78813.1|1800806_1800917_+	hypothetical protein	NA	NA	NA	NA	NA
AUU78814.1|1800906_1801944_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AUU78815.1|1802001_1802925_+	ferrochelatase	NA	NA	NA	NA	NA
AUU78816.1|1802948_1804349_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
AUU78817.1|1804350_1804578_-	hypothetical protein	NA	NA	NA	NA	NA
AUU78818.1|1804671_1805226_+	serine hydrolase family protein	NA	NA	NA	NA	NA
AUU78819.1|1806603_1807368_+	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	37.1	2.3e-31
AUU78820.1|1807648_1808368_+	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	35.8	2.3e-25
AUU78821.1|1808402_1809131_+	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	39.2	1.1e-27
AUU78822.1|1809284_1809686_+	enterotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	37.9	1.5e-10
AUU78823.1|1809660_1810056_+	enterotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	50.4	1.5e-26
AUU78824.1|1810094_1810850_+	exotoxin	NA	A0A075M4C7	Staphylococcus_phage	41.4	6.0e-40
AUU78825.1|1811132_1811909_+	enterotoxin	NA	NA	NA	NA	NA
AUU78826.1|1812126_1812312_-	hypothetical protein	NA	NA	NA	NA	NA
AUU78827.1|1812460_1813237_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AUU78828.1|1813257_1813494_-	hypothetical protein	NA	NA	NA	NA	NA
AUU78829.1|1813571_1814066_-	hypothetical protein	NA	NA	NA	NA	NA
AUU78830.1|1814899_1815688_-	hypothetical protein	NA	A0A2H4PQI0	Staphylococcus_phage	98.5	3.6e-144
AUU78831.1|1817051_1817987_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
AUU78832.1|1817988_1818972_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
AUU78833.1|1819341_1820133_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AUU78834.1|1820137_1820611_-	hypothetical protein	NA	NA	NA	NA	NA
AUU78835.1|1820866_1821085_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
AUU78836.1|1821557_1822139_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
AUU78837.1|1822447_1822666_+	hypothetical protein	NA	NA	NA	NA	NA
AUU78838.1|1823101_1823809_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
AUU78839.1|1823933_1824656_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
AUU78840.1|1824713_1825433_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
AUU78841.1|1825553_1826273_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AUU78842.1|1826221_1826329_-	hypothetical protein	NA	NA	NA	NA	NA
AUU78843.1|1826430_1827150_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
AUU78844.1|1827212_1827347_+	hypothetical protein	NA	NA	NA	NA	NA
AUU78845.1|1827327_1829067_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
AUU78846.1|1829059_1830289_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
AUU78847.1|1831364_1831466_-	hypothetical protein	NA	NA	NA	NA	NA
AUU78848.1|1833038_1833611_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
AUU78849.1|1833711_1834053_-	DUF3969 domain-containing protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
AUU78850.1|1834093_1834720_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
AUU78851.1|1834794_1835790_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
AUU78852.1|1835870_1836521_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
AUU79814.1|1836823_1837279_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
AUU78853.1|1837437_1838916_+	2-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
AUU78854.1|1838920_1839922_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
AUU78855.1|1839918_1840176_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AUU78856.1|1840241_1840715_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
AUU79815.1|1840719_1841466_+	dipeptidyl aminopeptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
AUU78857.1|1841843_1843436_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AUU78858.1|1843807_1845004_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
AUU78859.1|1845125_1846034_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
AUU78860.1|1846245_1847079_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
AUU78861.1|1849075_1849429_-	camphor resistance protein CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
AUU78862.1|1849425_1849791_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AUU78863.1|1850046_1850349_-	hypothetical protein	NA	NA	NA	NA	NA
AUU78864.1|1850608_1851322_+	transaldolase	NA	M1PR54	Cyanophage	35.3	9.4e-19
AUU78865.1|1851761_1852397_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AUU78866.1|1852692_1853136_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
AUU78867.1|1853122_1853566_-	competence protein ComK	NA	NA	NA	NA	NA
AUU78868.1|1853678_1854149_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
AUU78869.1|1854347_1854572_+	hypothetical protein	NA	NA	NA	NA	NA
AUU78870.1|1854847_1855702_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AUU78871.1|1855788_1857081_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AUU78872.1|1857080_1857395_-	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
AUU78873.1|1857917_1859420_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
AUU78874.1|1859912_1860944_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
AUU78875.1|1860950_1861583_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
AUU78876.1|1861593_1862775_+	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
AUU78877.1|1862787_1863252_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
AUU78878.1|1863373_1864375_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
AUU78879.1|1864486_1864606_+	hypothetical protein	NA	NA	NA	NA	NA
AUU78880.1|1864608_1865436_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUU78881.1|1866006_1866408_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUU78882.1|1866530_1867094_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AUU78883.1|1867090_1868044_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AUU78884.1|1868153_1869335_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
AUU78885.1|1869622_1872040_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
AUU78886.1|1872061_1872373_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
AUU78887.1|1872698_1879259_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	6.1e-306
>prophage 5
CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	2814696	2010922	2019965	2814696	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AUU79007.1|2010922_2011927_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AUU79008.1|2011928_2012954_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AUU79009.1|2012976_2014116_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AUU79010.1|2014134_2014395_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AUU79011.1|2014669_2016949_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AUU79012.1|2017151_2019425_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
AUU79013.1|2019446_2019965_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 6
CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	2814696	2638142	2646615	2814696		Synechococcus_phage(33.33%)	9	NA	NA
AUU79585.1|2638142_2638709_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
AUU79586.1|2638711_2639740_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
AUU79587.1|2639732_2641217_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
AUU79588.1|2641195_2643385_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
AUU79589.1|2643377_2644049_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AUU79590.1|2644050_2644314_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AUU79591.1|2644313_2645018_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AUU79592.1|2645021_2646146_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AUU79593.1|2646132_2646615_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 7
CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	2814696	2665543	2682827	2814696	bacteriocin,holin,protease	Staphylococcus_phage(33.33%)	23	NA	NA
AUU79609.1|2665543_2666572_+|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	32.3	6.3e-16
AUU79610.1|2666653_2667835_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
AUU79611.1|2667872_2668202_+	staphostatin B	NA	NA	NA	NA	NA
AUU79612.1|2668439_2669261_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
AUU79613.1|2669253_2670057_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
AUU79614.1|2670043_2671717_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	NA	NA	NA	NA	NA
AUU79615.1|2671703_2672915_-	isochorismate synthase	NA	NA	NA	NA	NA
AUU79616.1|2672991_2673096_-	hypothetical protein	NA	NA	NA	NA	NA
AUU79617.1|2673246_2674185_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
AUU79618.1|2674236_2674788_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUU79619.1|2674877_2675168_+	NINE protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
AUU79620.1|2675231_2675363_+	hypothetical protein	NA	NA	NA	NA	NA
AUU79621.1|2675408_2676368_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUU79622.1|2676855_2677212_+	DoxX family protein	NA	NA	NA	NA	NA
AUU79623.1|2677300_2677438_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
AUU79624.1|2677578_2677869_+	hypothetical protein	NA	NA	NA	NA	NA
AUU79625.1|2677956_2678598_-|bacteriocin	bacteriocin ABC transporter ATP-binding protein	bacteriocin	G9BWD6	Planktothrix_phage	33.0	1.7e-19
AUU79626.1|2678594_2678915_-	hypothetical protein	NA	NA	NA	NA	NA
AUU79627.1|2678917_2680882_-	DUF1430 domain-containing protein	NA	NA	NA	NA	NA
AUU79842.1|2680925_2681198_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
AUU79628.1|2681207_2681309_-	hypothetical protein	NA	NA	NA	NA	NA
AUU79843.1|2681847_2681925_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AUU79629.1|2682224_2682827_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
