assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_001019575.2_ASM101957v2	CP026074	Staphylococcus aureus strain HPV107 chromosome, complete genome	1	110608-110692	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,WYL,DinG	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	110634-110666|110634-110666	CP026074.1_1517874-1517842|CP026074.1_2694219-2694187	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA,NA	NA|228aa|up_9|CP026074.1_99817_100501_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|CP026074.1_100744_100921_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|CP026074.1_101213_102560_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|CP026074.1_102566_103319_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|CP026074.1_103320_104259_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|CP026074.1_104262_105402_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|CP026074.1_105537_107370_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|CP026074.1_107438_108065_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|CP026074.1_108096_109074_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|CP026074.1_109174_110299_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|CP026074.1_110864_112688_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|CP026074.1_113033_113285_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|CP026074.1_113329_114304_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|CP026074.1_114360_116508_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|CP026074.1_116566_117028_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|CP026074.1_117119_117806_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|CP026074.1_117845_118562_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|CP026074.1_118564_118918_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|CP026074.1_118918_119503_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|CP026074.1_119492_120062_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCA_001019575.2_ASM101957v2	CP026074	Staphylococcus aureus strain HPV107 chromosome, complete genome	2	581034-581115	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,WYL,DinG	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	581058-581091|581058-581091|581058-581091|581058-581091|581058-581091	CP026074.1_2165905-2165938|CP026074.1_2481016-2480983|CP026074.1_230664-230631|CP026074.1_1313915-1313948|CP026074.1_2698560-2698593	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA|62aa|up_7|CP026074.1_572920_573106_+,NA|56aa|up_6|CP026074.1_573305_573473_+,NA	NA|80aa|up_9|CP026074.1_571648_571888_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|236aa|up_8|CP026074.1_572058_572766_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|62aa|up_7|CP026074.1_572920_573106_+	NA	NA|56aa|up_6|CP026074.1_573305_573473_+	NA	NA|358aa|up_5|CP026074.1_573770_574844_+	pfam07751, Abi_2, Abi-like protein	NA|346aa|up_4|CP026074.1_574904_575942_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|275aa|up_3|CP026074.1_575998_576823_+	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|339aa|up_2|CP026074.1_577060_578077_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|CP026074.1_578098_579154_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|CP026074.1_579589_580813_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|CP026074.1_581256_582564_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|CP026074.1_583103_584720_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|CP026074.1_584795_585080_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|CP026074.1_585254_585998_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|CP026074.1_586022_587282_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|CP026074.1_587478_588105_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|CP026074.1_588465_589251_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|CP026074.1_589850_589985_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|CP026074.1_590220_590784_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|CP026074.1_590786_590930_+	smart00794, AgrD, Staphylococcal AgrD protein
GCA_001019575.2_ASM101957v2	CP026074	Staphylococcus aureus strain HPV107 chromosome, complete genome	3	708256-708336	3	CRISPRCasFinder	no	csa3	cas3,csa3,DEDDh,RT,WYL,DinG	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA|77aa|up_5|CP026074.1_703130_703361_-,NA|364aa|up_0|CP026074.1_707147_708239_+,NA|35aa|down_0|CP026074.1_708671_708776_-,NA|61aa|down_1|CP026074.1_709208_709391_-,NA|53aa|down_2|CP026074.1_709455_709614_+,NA|31aa|down_3|CP026074.1_710050_710143_+	NA|237aa|up_9|CP026074.1_698741_699452_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP026074.1_699572_700016_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP026074.1_700215_700629_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP026074.1_701085_702459_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP026074.1_703130_703361_-	NA	NA|313aa|up_4|CP026074.1_703391_704330_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP026074.1_704765_705431_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP026074.1_705582_705903_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|CP026074.1_705904_706882_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP026074.1_707147_708239_+	NA	NA|35aa|down_0|CP026074.1_708671_708776_-	NA	NA|61aa|down_1|CP026074.1_709208_709391_-	NA	NA|53aa|down_2|CP026074.1_709455_709614_+	NA	NA|31aa|down_3|CP026074.1_710050_710143_+	NA	NA|286aa|down_4|CP026074.1_710271_711129_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|CP026074.1_711196_711979_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|CP026074.1_712210_714016_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|CP026074.1_714696_716235_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|CP026074.1_716269_718402_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|CP026074.1_718413_718848_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCA_001019575.2_ASM101957v2	CP026074	Staphylococcus aureus strain HPV107 chromosome, complete genome	5	873999-874079	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,WYL,DinG	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	13	874024-874054|874024-874054|874024-874054|874024-874054|874024-874054|874024-874054|874024-874054|874024-874054|874024-874054|874024-874054|874024-874054|874024-874054|874024-874054	CP026074.1_2178649-2178679|CP026074.1_125302-125272|CP026074.1_477898-477928|CP026074.1_863223-863253|CP026074.1_1038693-1038723|CP026074.1_1419038-1419068|CP026074.1_1717379-1717349|CP026074.1_2001229-2001199|CP026074.1_2215120-2215150|CP026074.1_2382607-2382637|CP026074.1_2486558-2486528|CP026074.1_2694175-2694145|CP026074.1_2782580-2782610	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA|55aa|up_8|CP026074.1_864532_864697_+,NA|106aa|up_7|CP026074.1_864941_865259_+,NA|84aa|up_5|CP026074.1_870380_870632_+,NA|62aa|up_0|CP026074.1_873771_873957_+,NA	NA|297aa|up_9|CP026074.1_863491_864382_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|CP026074.1_864532_864697_+	NA	NA|106aa|up_7|CP026074.1_864941_865259_+	NA	NA|422aa|up_6|CP026074.1_868726_869992_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|CP026074.1_870380_870632_+	NA	NA|255aa|up_4|CP026074.1_870623_871388_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|CP026074.1_871549_871990_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|CP026074.1_871982_873194_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|CP026074.1_873295_873646_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|CP026074.1_873771_873957_+	NA	NA|341aa|down_0|CP026074.1_874222_875245_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|CP026074.1_875264_875864_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|CP026074.1_875870_876104_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|CP026074.1_876109_876556_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|CP026074.1_876569_877055_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|CP026074.1_877051_878311_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|CP026074.1_878373_878868_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|CP026074.1_878869_879376_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|CP026074.1_879406_880411_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|CP026074.1_880580_881186_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCA_001019575.2_ASM101957v2	CP026074	Staphylococcus aureus strain HPV107 chromosome, complete genome	6	1772718-1772819	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,WYL,DinG	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA|70aa|up_9|CP026074.1_1764277_1764487_-,NA|128aa|up_7|CP026074.1_1765311_1765695_-,NA|33aa|up_1|CP026074.1_1771942_1772041_+,NA|86aa|up_0|CP026074.1_1772251_1772509_-,NA|221aa|down_1|CP026074.1_1773909_1774572_-,NA|179aa|down_7|CP026074.1_1780663_1781200_-	NA|70aa|up_9|CP026074.1_1764277_1764487_-	NA	NA|194aa|up_8|CP026074.1_1764664_1765246_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|CP026074.1_1765311_1765695_-	NA	NA|209aa|up_6|CP026074.1_1765964_1766591_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|CP026074.1_1767034_1768558_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|CP026074.1_1768573_1769143_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|CP026074.1_1769634_1770390_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|CP026074.1_1770469_1771858_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|CP026074.1_1771942_1772041_+	NA	NA|86aa|up_0|CP026074.1_1772251_1772509_-	NA	NA|319aa|down_0|CP026074.1_1772835_1773792_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|CP026074.1_1773909_1774572_-	NA	NA|136aa|down_2|CP026074.1_1774714_1775122_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|CP026074.1_1775634_1776213_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|CP026074.1_1776212_1777481_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|CP026074.1_1777518_1778985_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|CP026074.1_1779009_1780551_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|CP026074.1_1780663_1781200_-	NA	NA|235aa|down_8|CP026074.1_1781591_1782296_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|CP026074.1_1782694_1782967_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCA_001019575.2_ASM101957v2	CP026074	Staphylococcus aureus strain HPV107 chromosome, complete genome	7	2124957-2125039	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,WYL,DinG	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA|69aa|up_9|CP026074.1_2111570_2111777_+,NA|56aa|down_0|CP026074.1_2125250_2125418_+,NA|34aa|down_2|CP026074.1_2126694_2126796_+,NA|89aa|down_6|CP026074.1_2130492_2130759_+	NA|69aa|up_9|CP026074.1_2111570_2111777_+	NA	NA|237aa|up_8|CP026074.1_2111864_2112575_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|CP026074.1_2112558_2113563_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|CP026074.1_2114036_2115977_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|CP026074.1_2116246_2118130_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|CP026074.1_2118141_2119923_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|CP026074.1_2120144_2121122_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|CP026074.1_2121114_2122629_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|CP026074.1_2122868_2123927_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|CP026074.1_2124265_2124808_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|56aa|down_0|CP026074.1_2125250_2125418_+	NA	NA|306aa|down_1|CP026074.1_2125686_2126604_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_2|CP026074.1_2126694_2126796_+	NA	NA|502aa|down_3|CP026074.1_2126873_2128379_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_4|CP026074.1_2128721_2129222_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_5|CP026074.1_2129241_2130108_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|89aa|down_6|CP026074.1_2130492_2130759_+	NA	NA|133aa|down_7|CP026074.1_2130908_2131307_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_8|CP026074.1_2131269_2133375_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_9|CP026074.1_2133492_2134464_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit
GCA_001019575.2_ASM101957v2	CP026074	Staphylococcus aureus strain HPV107 chromosome, complete genome	8	2165906-2165984	8	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,RT,WYL,DinG	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	2165930-2165960|2165930-2165960|2165930-2165960	CP026074.1_1641045-1641015|CP026074.1_145090-145120|CP026074.1_1640990-1640960	NA	1	1	Unclear	cas3,csa3,DEDDh,RT,WYL,DinG	NA|35aa|up_7|CP026074.1_2156782_2156887_+,NA|36aa|up_5|CP026074.1_2158319_2158427_+,NA	NA|191aa|up_9|CP026074.1_2153223_2153796_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|CP026074.1_2154209_2156741_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|CP026074.1_2156782_2156887_+	NA	NA|370aa|up_6|CP026074.1_2157055_2158166_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|CP026074.1_2158319_2158427_+	NA	NA|280aa|up_4|CP026074.1_2158574_2159414_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|CP026074.1_2159587_2160238_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|CP026074.1_2160234_2160471_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|CP026074.1_2160739_2162725_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|CP026074.1_2162732_2165579_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|CP026074.1_2166242_2167175_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|CP026074.1_2167180_2168020_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|CP026074.1_2168027_2168513_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|CP026074.1_2168520_2169960_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|CP026074.1_2170026_2170962_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|CP026074.1_2171847_2172759_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|CP026074.1_2172755_2173751_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|CP026074.1_2173861_2174806_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|CP026074.1_2175369_2175957_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|CP026074.1_2176199_2177102_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCA_001019575.2_ASM101957v2	CP026074	Staphylococcus aureus strain HPV107 chromosome, complete genome	9	2171361-2171630	1	CRT	no	cas3	cas3,csa3,DEDDh,RT,WYL,DinG	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	44	2171397-2171418|2171397-2171418|2171397-2171418|2171397-2171418|2171397-2171418|2171397-2171418|2171397-2171418|2171397-2171418|2171397-2171418|2171397-2171418|2171397-2171418|2171397-2171418|2171397-2171418|2171397-2171418|2171455-2171477|2171455-2171477|2171455-2171477|2171455-2171477|2171455-2171477|2171455-2171477|2171455-2171477|2171455-2171477|2171514-2171535|2171514-2171535|2171514-2171535|2171514-2171535|2171514-2171535|2171514-2171535|2171514-2171535|2171514-2171535|2171514-2171535|2171514-2171535|2171514-2171535|2171514-2171535|2171514-2171535|2171514-2171535|2171572-2171594|2171572-2171594|2171572-2171594|2171572-2171594|2171572-2171594|2171572-2171594|2171572-2171594|2171572-2171594	CP026074.1_110684-110705|CP026074.1_125239-125218|CP026074.1_479246-479267|CP026074.1_1517708-1517687|CP026074.1_1517766-1517745|CP026074.1_1517824-1517803|CP026074.1_1640961-1640940|CP026074.1_2001165-2001144|CP026074.1_2123998-2124019|CP026074.1_2214857-2214878|CP026074.1_2694111-2694090|CP026074.1_144945-144966|CP026074.1_145178-145199|CP026074.1_2285089-2285110|CP026074.1_479304-479326|CP026074.1_863170-863192|CP026074.1_1517883-1517861|CP026074.1_2124970-2124948|CP026074.1_2125248-2125226|CP026074.1_2694228-2694206|CP026074.1_581115-581137|CP026074.1_2782527-2782549|CP026074.1_110684-110705|CP026074.1_125239-125218|CP026074.1_479246-479267|CP026074.1_1517708-1517687|CP026074.1_1517766-1517745|CP026074.1_1517824-1517803|CP026074.1_1640961-1640940|CP026074.1_2001165-2001144|CP026074.1_2123998-2124019|CP026074.1_2214857-2214878|CP026074.1_2694111-2694090|CP026074.1_144945-144966|CP026074.1_145178-145199|CP026074.1_2285089-2285110|CP026074.1_479304-479326|CP026074.1_863170-863192|CP026074.1_1517883-1517861|CP026074.1_2124970-2124948|CP026074.1_2125248-2125226|CP026074.1_2694228-2694206|CP026074.1_581115-581137|CP026074.1_2782527-2782549	NA	4	4	Unclear	cas3,csa3,DEDDh,RT,WYL,DinG	NA,NA	NA|280aa|up_9|CP026074.1_2158574_2159414_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|CP026074.1_2159587_2160238_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|CP026074.1_2160234_2160471_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|CP026074.1_2160739_2162725_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|CP026074.1_2162732_2165579_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|CP026074.1_2166242_2167175_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|CP026074.1_2167180_2168020_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|CP026074.1_2168027_2168513_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|CP026074.1_2168520_2169960_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|CP026074.1_2170026_2170962_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|CP026074.1_2171847_2172759_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|CP026074.1_2172755_2173751_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|CP026074.1_2173861_2174806_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|CP026074.1_2175369_2175957_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|CP026074.1_2176199_2177102_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|CP026074.1_2177804_2178434_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|CP026074.1_2179134_2180148_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|CP026074.1_2180200_2181211_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|CP026074.1_2181349_2182540_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|CP026074.1_2182661_2183423_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCA_001019575.2_ASM101957v2	CP026074	Staphylococcus aureus strain HPV107 chromosome, complete genome	10	2214784-2214865	9	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,WYL,DinG	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	2214808-2214841	CP026074.1_2694219-2694186	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA|38aa|up_1|CP026074.1_2213686_2213800_+,NA|38aa|down_0|CP026074.1_2215153_2215267_+	NA|206aa|up_9|CP026074.1_2208540_2209158_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|CP026074.1_2209312_2209807_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|CP026074.1_2210205_2210628_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|CP026074.1_2210775_2211492_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|CP026074.1_2211574_2212114_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|CP026074.1_2212264_2212585_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|CP026074.1_2212728_2213085_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|CP026074.1_2213242_2213623_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|CP026074.1_2213686_2213800_+	NA	NA|293aa|up_0|CP026074.1_2213801_2214680_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_0|CP026074.1_2215153_2215267_+	NA	NA|129aa|down_1|CP026074.1_2215476_2215863_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_2|CP026074.1_2215855_2216152_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_3|CP026074.1_2216401_2217427_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_4|CP026074.1_2217419_2218115_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_5|CP026074.1_2218132_2218954_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_6|CP026074.1_2219307_2219502_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_7|CP026074.1_2219735_2220587_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_8|CP026074.1_2220914_2221676_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_9|CP026074.1_2221773_2223081_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
