assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_001183725.2_ASM118372v2	CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	1	425823-426131	1,1	CRT,CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	CCAACTTGCANNNTNTNNNNAGCTGNCTTT,CCAGCCTCTGTGTTGGGGCCCCG	30,23	3	4	425936-425961|426050-426075|426050-426075|426076-426108	CP012120.2_977027-977052|CP012120.2_518205-518180|CP012120.2_555243-555268|CP012120.2_474632-474600	NA:NA	4,1	4	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA,NA	NA|301aa|up_9|CP012120.2_409947_410850_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|CP012120.2_411015_414669_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|CP012120.2_414669_418146_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|CP012120.2_418305_418881_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|CP012120.2_418896_419421_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|CP012120.2_419425_420001_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|CP012120.2_420325_421657_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|CP012120.2_422007_423213_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|CP012120.2_423202_424582_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|CP012120.2_424823_425753_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|CP012120.2_426255_427500_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|CP012120.2_427608_428799_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|CP012120.2_429106_430234_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|CP012120.2_430595_430973_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|CP012120.2_431388_431982_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|CP012120.2_432045_432429_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|CP012120.2_432559_434965_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|CP012120.2_434957_435386_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|CP012120.2_435397_435727_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|CP012120.2_435719_437216_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCA_001183725.2_ASM118372v2	CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	2	474880-474961	2	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	474904-474937|474904-474937	CP012120.2_2774924-2774957|CP012120.2_2864149-2864116	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|38aa|up_0|CP012120.2_474532_474646_-,NA|38aa|down_1|CP012120.2_475944_476058_-	NA|436aa|up_9|CP012120.2_466719_468027_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_8|CP012120.2_468124_468886_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_7|CP012120.2_469213_470065_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_6|CP012120.2_470297_470492_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_5|CP012120.2_470845_471667_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_4|CP012120.2_471684_472380_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_3|CP012120.2_472372_473398_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_2|CP012120.2_473647_473944_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_1|CP012120.2_473936_474323_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|38aa|up_0|CP012120.2_474532_474646_-	NA	NA|293aa|down_0|CP012120.2_475064_475943_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|CP012120.2_475944_476058_-	NA	NA|127aa|down_2|CP012120.2_476121_476502_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|CP012120.2_476659_477016_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|CP012120.2_477159_477480_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|CP012120.2_477629_478169_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|CP012120.2_478251_478968_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|CP012120.2_479115_479538_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|CP012120.2_479936_480431_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|CP012120.2_480585_481203_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCA_001183725.2_ASM118372v2	CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	3	510849-510941	3	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	AGTTGGGGTGGGGCCCCAACATAGTGAAATTGG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|153aa|up_6|CP012120.2_502378_502837_-,NA|45aa|down_6|CP012120.2_518116_518251_+	NA|791aa|up_9|CP012120.2_498816_501189_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|247aa|up_8|CP012120.2_501222_501963_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|up_7|CP012120.2_502078_502312_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|153aa|up_6|CP012120.2_502378_502837_-	NA	NA|435aa|up_5|CP012120.2_503176_504481_-	PRK00077, eno, enolase; Provisional	NA|506aa|up_4|CP012120.2_504610_506128_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|254aa|up_3|CP012120.2_506130_506892_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_2|CP012120.2_507013_508204_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_1|CP012120.2_508342_509353_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_0|CP012120.2_509405_510419_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|down_0|CP012120.2_511178_511808_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|down_1|CP012120.2_512509_513412_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|down_2|CP012120.2_513654_514242_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|down_3|CP012120.2_514815_515760_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|down_4|CP012120.2_515869_516865_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|down_5|CP012120.2_516861_517773_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|45aa|down_6|CP012120.2_518116_518251_+	NA	NA|312aa|down_7|CP012120.2_518596_519532_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_8|CP012120.2_519598_521038_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_9|CP012120.2_521045_521531_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins
GCA_001183725.2_ASM118372v2	CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	4	693953-694045	4	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|239aa|up_5|CP012120.2_688820_689537_-,NA|169aa|up_4|CP012120.2_689698_690205_-,NA|82aa|down_1|CP012120.2_695033_695279_+,NA|36aa|down_4|CP012120.2_697452_697560_-	NA|168aa|up_9|CP012120.2_684502_685006_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|179aa|up_8|CP012120.2_684986_685523_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|125aa|up_7|CP012120.2_687238_687613_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|CP012120.2_687863_688652_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|CP012120.2_688820_689537_-	NA	NA|169aa|up_4|CP012120.2_689698_690205_-	NA	NA|267aa|up_3|CP012120.2_690340_691141_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|CP012120.2_691124_691844_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|CP012120.2_691898_692849_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|CP012120.2_692996_693824_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|CP012120.2_694262_694898_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|82aa|down_1|CP012120.2_695033_695279_+	NA	NA|554aa|down_2|CP012120.2_695285_696947_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_3|CP012120.2_696943_697327_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_4|CP012120.2_697452_697560_-	NA	NA|337aa|down_5|CP012120.2_697634_698645_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_6|CP012120.2_699143_699665_-	pfam08741, YwhD, YwhD family	NA|432aa|down_7|CP012120.2_699692_700988_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_8|CP012120.2_701027_701504_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_9|CP012120.2_701672_702209_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]
GCA_001183725.2_ASM118372v2	CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	5	938285-938386	5	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|179aa|up_7|CP012120.2_929903_930440_+,NA|221aa|up_1|CP012120.2_936531_937194_+,NA|86aa|down_0|CP012120.2_938593_938851_+,NA|34aa|down_1|CP012120.2_939058_939160_-,NA|98aa|down_6|CP012120.2_944147_944441_+,NA|128aa|down_8|CP012120.2_945394_945778_+	NA|91aa|up_9|CP012120.2_928135_928408_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|CP012120.2_928806_929511_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|CP012120.2_929903_930440_+	NA	NA|514aa|up_6|CP012120.2_930552_932094_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|CP012120.2_932118_933585_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|CP012120.2_933622_934891_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|CP012120.2_934890_935469_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|CP012120.2_935981_936389_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|CP012120.2_936531_937194_+	NA	NA|319aa|up_0|CP012120.2_937311_938268_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|86aa|down_0|CP012120.2_938593_938851_+	NA	NA|34aa|down_1|CP012120.2_939058_939160_-	NA	NA|463aa|down_2|CP012120.2_939244_940633_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_3|CP012120.2_940713_941469_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_4|CP012120.2_941960_942530_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_5|CP012120.2_942545_944069_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|98aa|down_6|CP012120.2_944147_944441_+	NA	NA|209aa|down_7|CP012120.2_944513_945140_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_8|CP012120.2_945394_945778_+	NA	NA|194aa|down_9|CP012120.2_945843_946425_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCA_001183725.2_ASM118372v2	CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	6	1414286-1414459	1,6	PILER-CR,CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	23	1414339-1414355|1414339-1414355|1414339-1414355|1414339-1414355|1414339-1414355|1414339-1414355|1414339-1414355|1414409-1414424|1414409-1414424|1414409-1414424|1414409-1414424|1414409-1414424|1414409-1414424|1414409-1414424|1414409-1414424|1414409-1414424|1414409-1414424|1414409-1414424|1414409-1414424|1414409-1414424|1414409-1414424|1414409-1414424|1414409-1414424	CP012120.2_523574-523590|CP012120.2_523629-523645|CP012120.2_1058798-1058782|CP012121.2_22526-22510|CP012121.2_23712-23696|CP012121.2_24522-24506|CP012121.2_35042-35058|CP012120.2_208085-208070|CP012120.2_308698-308713|CP012120.2_474607-474622|CP012120.2_518210-518225|CP012120.2_977022-977007|CP012120.2_1579760-1579775|CP012120.2_2203646-2203661|CP012120.2_2203704-2203719|CP012120.2_2774896-2774911|CP012120.2_2859765-2859780|CP012120.2_2864177-2864162|CP012120.2_212053-212038|CP012120.2_1766366-1766381|CP012120.2_2371098-2371083|CP012120.2_2549663-2549678|CP012120.2_2818109-2818124	NA:NA	2,1	2	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|60aa|up_1|CP012120.2_1411245_1411425_+,NA	NA|205aa|up_9|CP012120.2_1404963_1405578_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|CP012120.2_1405570_1406821_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|CP012120.2_1406836_1407850_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|CP012120.2_1407818_1408397_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|CP012120.2_1408393_1408972_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|CP012120.2_1408964_1409669_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|CP012120.2_1409665_1410424_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|CP012120.2_1410420_1411053_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|CP012120.2_1411245_1411425_+	NA	NA|681aa|up_0|CP012120.2_1412145_1414188_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|CP012120.2_1414634_1415687_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|CP012120.2_1415673_1416546_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|CP012120.2_1416542_1416848_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|CP012120.2_1416811_1418050_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|CP012120.2_1418213_1418774_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|CP012120.2_1419621_1420284_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|CP012120.2_1420300_1420993_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|CP012120.2_1420989_1421757_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|CP012120.2_1421991_1422492_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|CP012120.2_1422494_1422971_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCA_001183725.2_ASM118372v2	CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	7	1855545-1855738	2	CRT	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	3	12	1855568-1855600|1855568-1855600|1855568-1855600|1855568-1855600|1855624-1855659|1855624-1855659|1855624-1855659|1855624-1855659|1855683-1855715|1855683-1855715|1855683-1855715|1855683-1855715	CP012120.2_208102-208070|CP012120.2_518193-518225|CP012120.2_1579743-1579775|CP012120.2_2864194-2864162|CP012120.2_208158-208123|CP012120.2_2371229-2371194|CP012120.2_2203745-2203780|CP012120.2_2549704-2549739|CP012120.2_208102-208070|CP012120.2_1579743-1579775|CP012120.2_2774879-2774911|CP012120.2_2864194-2864162	NA	3	3	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA,NA|57aa|down_0|CP012120.2_1855797_1855968_-,NA|84aa|down_5|CP012120.2_1859107_1859359_-,NA|106aa|down_8|CP012120.2_1864483_1864801_-,NA|55aa|down_9|CP012120.2_1865045_1865210_-	NA|202aa|up_9|CP012120.2_1848439_1849045_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|CP012120.2_1849214_1850219_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|CP012120.2_1850249_1850756_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|CP012120.2_1850757_1851252_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|CP012120.2_1851314_1852574_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|CP012120.2_1852570_1853056_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|CP012120.2_1853069_1853516_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|CP012120.2_1853521_1853755_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|CP012120.2_1853761_1854361_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|CP012120.2_1854380_1855403_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|CP012120.2_1855797_1855968_-	NA	NA|117aa|down_1|CP012120.2_1856093_1856444_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|CP012120.2_1856545_1857757_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|CP012120.2_1857749_1858190_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|CP012120.2_1858351_1859116_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|CP012120.2_1859107_1859359_-	NA	NA|422aa|down_6|CP012120.2_1859747_1861013_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|CP012120.2_1861129_1864297_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|CP012120.2_1864483_1864801_-	NA	NA|55aa|down_9|CP012120.2_1865045_1865210_-	NA
GCA_001183725.2_ASM118372v2	CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	8	1979506-1979656	7	CRISPRCasFinder	no	csa3	DEDDh,cas3,WYL,csa3,DinG	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|31aa|up_3|CP012120.2_1976865_1976958_-,NA|35aa|up_0|CP012120.2_1979069_1979174_+,NA|364aa|down_0|CP012120.2_1979673_1980765_-,NA|77aa|down_5|CP012120.2_1984553_1984784_+	NA|145aa|up_9|CP012120.2_1967584_1968019_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_8|CP012120.2_1968030_1970163_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_7|CP012120.2_1970197_1971736_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_6|CP012120.2_1972416_1974222_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_5|CP012120.2_1974453_1975236_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_4|CP012120.2_1975303_1976161_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_3|CP012120.2_1976865_1976958_-	NA	NA|379aa|up_2|CP012120.2_1977246_1978383_+	pfam02037, SAP, SAP domain	NA|68aa|up_1|CP012120.2_1978441_1978645_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|35aa|up_0|CP012120.2_1979069_1979174_+	NA	NA|364aa|down_0|CP012120.2_1979673_1980765_-	NA	NA|327aa|down_1|CP012120.2_1981030_1982011_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|CP012120.2_1982012_1982333_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|CP012120.2_1982484_1983150_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|CP012120.2_1983584_1984523_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|CP012120.2_1984553_1984784_+	NA	NA|458aa|down_6|CP012120.2_1985455_1986829_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|CP012120.2_1987286_1987700_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|CP012120.2_1987899_1988343_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|CP012120.2_1988463_1989174_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCA_001183725.2_ASM118372v2	CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	9	2214528-2214606	8	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,WYL,csa3,DinG	Unclear	TGCAGGTTGGCGGGGCCCCAACA	23	1	5	2214551-2214583|2214551-2214583|2214551-2214583|2214551-2214583|2214551-2214583	CP012120.2_208102-208070|CP012120.2_1579743-1579775|CP012120.2_2549646-2549678|CP012120.2_2864194-2864162|CP012120.2_2774879-2774911	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|31aa|up_7|CP012120.2_2209134_2209227_+,NA|37aa|up_3|CP012120.2_2212232_2212343_+,NA|138aa|up_2|CP012120.2_2212371_2212785_+,NA|71aa|up_1|CP012120.2_2213046_2213259_+,NA|129aa|down_1|CP012120.2_2215763_2216150_+,NA|92aa|down_6|CP012120.2_2220135_2220411_-	NA|357aa|up_9|CP012120.2_2207227_2208298_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_8|CP012120.2_2208365_2208920_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_7|CP012120.2_2209134_2209227_+	NA	NA|167aa|up_6|CP012120.2_2209308_2209809_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_5|CP012120.2_2210100_2211414_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_4|CP012120.2_2211415_2212147_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_3|CP012120.2_2212232_2212343_+	NA	NA|138aa|up_2|CP012120.2_2212371_2212785_+	NA	NA|71aa|up_1|CP012120.2_2213046_2213259_+	NA	NA|329aa|up_0|CP012120.2_2213274_2214261_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|CP012120.2_2214788_2215547_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|CP012120.2_2215763_2216150_+	NA	NA|234aa|down_2|CP012120.2_2216164_2216866_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|CP012120.2_2216862_2217906_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|CP012120.2_2217895_2218525_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|CP012120.2_2218640_2219858_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|CP012120.2_2220135_2220411_-	NA	NA|155aa|down_7|CP012120.2_2220417_2220882_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|CP012120.2_2221028_2221229_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|CP012120.2_2221231_2222488_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
