The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP014016	Staphylococcus simulans strain FDAARGOS_124, complete genome	2647556	568717	603082	2647556	tRNA	Staphylococcus_phage(92.59%)	35	NA	NA
AMG95801.2|568717_570679_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	30.3	1.8e-67
AMG95802.2|571020_571512_-	hypothetical protein	NA	NA	NA	NA	NA
AMG95803.1|571712_572405_+	hypothetical protein	NA	NA	NA	NA	NA
AMG95804.1|572520_573909_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	56.9	3.8e-157
AMG95805.1|573911_574922_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	54.0	8.5e-98
AMG95806.1|574912_575170_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	75.7	4.7e-29
AMG95807.1|575247_575739_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	50.3	1.0e-35
AMG95808.1|575704_576478_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	66.5	1.7e-93
AMG95809.1|576530_578123_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.4	4.0e-259
AMG95810.1|578509_579706_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	81.4	8.8e-187
AMG95811.1|579802_580702_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	75.4	4.0e-99
AMG95812.1|580823_581660_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	64.1	3.2e-103
AMG95813.1|581711_582065_-	CrcB family protein	NA	NA	NA	NA	NA
AMG95814.1|582057_582429_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	63.6	5.2e-37
AMG95815.1|582489_582798_-	hypothetical protein	NA	NA	NA	NA	NA
AMG95816.1|582985_583702_+	transaldolase	NA	M1PR54	Cyanophage	35.0	3.8e-20
AMG95817.1|583843_584305_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	40.9	1.8e-18
AMG95818.1|584279_584720_-	hypothetical protein	NA	NA	NA	NA	NA
AMG95819.1|584719_585217_-	RNA polymerase subunit sigma	NA	A0A2H4PQT5	Staphylococcus_phage	42.5	1.1e-21
AMG95820.1|585421_585643_+	hypothetical protein	NA	NA	NA	NA	NA
AMG95821.1|586042_586888_+	autolysin	NA	A0A1W6JNR1	Staphylococcus_phage	41.7	4.2e-42
AMG95822.1|587029_588511_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	64.5	1.0e-14
AMG95823.1|588904_589954_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	59.6	9.0e-119
AMG95824.1|589958_590591_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	61.4	3.7e-67
AMG95825.1|590606_591788_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	73.5	1.8e-168
AMG95826.1|591820_592282_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	72.5	1.1e-57
AMG95827.1|592355_593351_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	63.3	2.9e-114
AMG95828.1|593612_594443_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AMG95829.1|594619_595576_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
AMG95830.1|595641_596199_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	62.2	6.0e-61
AMG95831.1|596195_597158_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.4	2.5e-67
AMG95832.1|597430_598609_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	73.2	6.7e-163
AMG95833.1|598987_601402_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	84.9	0.0e+00
AMG95834.1|601422_601740_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	66.7	1.5e-32
AMG95835.1|601825_603082_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	75.0	2.6e-40
>prophage 2
CP014016	Staphylococcus simulans strain FDAARGOS_124, complete genome	2647556	726337	736411	2647556	tRNA	Klosneuvirus(33.33%)	7	NA	NA
AMG95942.1|726337_728611_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.7	2.7e-75
AMG95943.1|728629_729148_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.4	8.1e-28
AMG95944.1|729499_731689_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	38.0	9.0e-12
AMG95945.1|731704_732157_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
AMG95946.1|732153_733029_+	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.1	6.8e-11
AMG95947.1|733354_734629_+|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L6G5	Tupanvirus	23.8	3.9e-15
AMG95948.1|734644_736411_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	33.7	9.2e-07
>prophage 3
CP014016	Staphylococcus simulans strain FDAARGOS_124, complete genome	2647556	1308080	1316502	2647556		Prochlorococcus_phage(33.33%)	9	NA	NA
AMG96483.1|1308080_1308647_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.3	3.5e-32
AMG96484.1|1308643_1309684_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.5	1.5e-68
AMG96485.1|1309688_1311110_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	30.8	5.6e-47
AMG96486.1|1311088_1313278_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	7.4e-139
AMG96487.1|1313270_1313942_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AMG96488.1|1313941_1314202_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AMG96489.1|1314201_1314906_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	42.9	1.1e-48
AMG96490.1|1314905_1316033_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AMG96491.1|1316019_1316502_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	4.7e-22
>prophage 4
CP014016	Staphylococcus simulans strain FDAARGOS_124, complete genome	2647556	1518767	1578468	2647556	protease,integrase,terminase,transposase,tail,capsid,portal,head	Staphylococcus_phage(55.26%)	72	1562669:1562683	1584139:1584153
AMG96653.1|1518767_1519526_-	Fe-S cluster assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	28.3	1.8e-07
AMG96654.1|1520283_1520874_-	hypothetical protein	NA	NA	NA	NA	NA
AMG96655.1|1521358_1521829_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	53.6	4.4e-41
AMG96656.1|1521888_1522524_-	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	29.7	4.8e-22
AMG96657.1|1522520_1523039_-	hypothetical protein	NA	NA	NA	NA	NA
AMG96658.1|1523051_1523375_-	pathogenicity island protein	NA	A0A2H4JHK4	uncultured_Caudovirales_phage	36.5	1.2e-10
AMG97620.1|1523689_1524322_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	70.8	3.9e-85
AMG96659.1|1525004_1526660_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	42.5	1.1e-131
AMG96660.1|1526664_1527522_-	mobile element-associated protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	55.7	3.2e-90
AMG96661.1|1527607_1527901_-	DUF1474 domain-containing protein	NA	A0A1W6JQH0	Staphylococcus_phage	52.8	2.7e-20
AMG96662.1|1527901_1528312_-	pathogenicity island protein	NA	A0A2H4JBF1	uncultured_Caudovirales_phage	85.8	1.8e-59
AMG96663.1|1528313_1528517_-	pathogenicity island protein	NA	A0A2H4JD47	uncultured_Caudovirales_phage	69.8	2.9e-18
AMG96664.1|1528535_1528808_-	pathogenicity island protein	NA	Q4ZE77	Staphylococcus_phage	57.8	5.7e-25
AMG97621.1|1528773_1529019_-	XRE family transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	58.8	8.8e-17
AMG96665.2|1529231_1529759_+	XRE family transcriptional regulator	NA	A0A0E3U244	Fusobacterium_phage	55.8	3.6e-07
AMG96666.1|1529774_1530998_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	49.5	6.2e-103
AMG96667.1|1531140_1531968_-	methionine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AMG96668.1|1531992_1532688_-	ABC transporter permease	NA	NA	NA	NA	NA
AMG96669.1|1532680_1533706_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.4	2.1e-27
AMG96670.1|1533968_1534265_-	thioredoxin	NA	NA	NA	NA	NA
AMG96671.1|1534261_1534624_-	topiosmerase	NA	NA	NA	NA	NA
AMG96672.1|1534915_1535296_-	glycine cleavage system protein H	NA	NA	NA	NA	NA
AMG96673.1|1535450_1535807_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	47.7	5.9e-22
AMG96674.1|1535949_1536270_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	8.3e-07
AMG96675.1|1536338_1536881_-	nitroreductase	NA	NA	NA	NA	NA
AMG96676.1|1536954_1537680_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	27.9	3.1e-09
AMG96677.1|1538087_1538603_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AMG96678.1|1538758_1540075_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	29.6	4.7e-40
AMG96679.1|1540313_1540517_-	hypothetical protein	NA	NA	NA	NA	NA
AMG96680.1|1540985_1541843_-	TPM domain-containing protein	NA	NA	NA	NA	NA
AMG96681.1|1541839_1542421_-	LemA family protein	NA	NA	NA	NA	NA
AMG96682.1|1542638_1543943_+	potassium transporter KtrB	NA	NA	NA	NA	NA
AMG96683.1|1544061_1544808_+	hypothetical protein	NA	A0A2H4J494	uncultured_Caudovirales_phage	77.8	7.6e-19
AMG96684.1|1544882_1545086_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	67.7	4.1e-20
AMG96685.1|1545448_1546261_+	oxidoreductase	NA	NA	NA	NA	NA
AMG97622.1|1546329_1546944_-	flavin reductase family protein	NA	NA	NA	NA	NA
AMG96686.1|1547380_1548070_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	38.6	9.4e-16
AMG96687.1|1548681_1549152_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	84.9	3.2e-68
AMG96688.1|1549215_1551579_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.5	2.3e-93
AMG96689.1|1551622_1552363_-	carboxylesterase	NA	NA	NA	NA	NA
AMG96690.1|1552456_1552693_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AMG96691.1|1552781_1553249_-	hypothetical protein	NA	NA	NA	NA	NA
AMG96692.1|1553441_1554746_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	78.7	4.5e-192
AMG96693.1|1554839_1556357_-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA	NA
AMG96694.1|1556358_1557120_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AMG96695.1|1557159_1558350_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AMG96696.1|1558616_1559624_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AMG96697.1|1559677_1560703_-	hypothetical protein	NA	NA	NA	NA	NA
AMG96698.1|1561006_1561231_+	hypothetical protein	NA	NA	NA	NA	NA
AMG96699.1|1561275_1562064_-	DUF4887 domain-containing protein	NA	NA	NA	NA	NA
AMG96700.1|1562647_1563550_+	TIGR01777 family protein	NA	NA	NA	NA	NA
1562669:1562683	attL	GGCGGTACAGGTTTA	NA	NA	NA	NA
AMG96701.1|1563899_1564484_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	55.8	4.8e-53
AMG96702.1|1565341_1565701_-	hypothetical protein	NA	NA	NA	NA	NA
AMG96703.1|1565782_1566091_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
AMG96704.1|1566150_1567794_-|terminase	terminase large subunit	terminase	A0A290GJW3	Caldibacillus_phage	50.3	6.5e-156
AMG96705.1|1567786_1568107_-	hypothetical protein	NA	NA	NA	NA	NA
AMG96706.1|1568240_1568534_-	HNH endonuclease	NA	NA	NA	NA	NA
AMG96707.1|1568526_1568808_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
AMG96708.1|1568873_1570106_-|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
AMG96709.1|1570107_1570674_-|head,protease	HK97 family phage prohead protease	head,protease	U3PDW7	Staphylococcus_phage	37.1	2.7e-21
AMG96710.2|1570660_1571794_-|portal	phage portal protein	portal	A0A1L2BY94	Clostridium_phage	35.9	6.0e-60
AMG96711.1|1572032_1572305_-	pathogenicity island protein	NA	Q4ZE68	Staphylococcus_phage	70.8	1.2e-30
AMG96712.1|1572291_1573095_-	DNA primase	NA	Q4ZE69	Staphylococcus_phage	76.8	3.7e-120
AMG96713.1|1573264_1574884_-	phage resistance protein	NA	A0A1W6JPF4	Staphylococcus_phage	74.1	1.0e-230
AMG96714.1|1574941_1575241_-	DUF1474 domain-containing protein	NA	Q4ZE75	Staphylococcus_phage	48.5	6.1e-20
AMG96715.1|1575237_1575582_-	hypothetical protein	NA	NA	NA	NA	NA
AMG96716.1|1575586_1575793_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	63.1	5.1e-18
AMG96717.1|1575795_1575999_-	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	68.7	7.5e-22
AMG96718.1|1576015_1576261_-	DUF771 domain-containing protein	NA	NA	NA	NA	NA
AMG96719.1|1576305_1576533_-	XRE family transcriptional regulator	NA	A0A1Q1PVY0	Staphylococcus_phage	47.9	1.9e-10
AMG96720.2|1576652_1577411_+	XRE family transcriptional regulator	NA	A0A1Q1PVX8	Staphylococcus_phage	37.5	1.2e-06
AMG96721.1|1577412_1578468_+|integrase	site-specific integrase	integrase	A0A1W6JQE7	Staphylococcus_phage	43.1	5.8e-65
1584139:1584153	attR	TAAACCTGTACCGCC	NA	NA	NA	NA
>prophage 5
CP014016	Staphylococcus simulans strain FDAARGOS_124, complete genome	2647556	1619277	1631758	2647556		uncultured_Caudovirales_phage(50.0%)	10	NA	NA
AMG97624.1|1619277_1620246_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.4	7.8e-133
AMG96758.1|1620551_1621526_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	90.7	2.1e-170
AMG96759.1|1621638_1623744_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	88.0	0.0e+00
AMG96760.1|1623706_1624108_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	65.4	1.8e-43
AMG96761.1|1624992_1625880_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AMG96762.1|1625882_1626386_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	6.6e-51
AMG96763.1|1626568_1628092_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	37.7	7.1e-72
AMG96764.1|1628386_1629889_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.3	3.0e-67
AMG96765.1|1630015_1630552_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AMG96766.1|1630693_1631758_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.2	2.2e-19
