The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 2
CP013149	Lactobacillus plantarum strain MF1298, complete genome	3235952	573390	582133	3235952		Streptococcus_phage(66.67%)	11	NA	NA
APD00296.1|573390_575088_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	37.0	3.9e-55
APD02616.2|575109_575418_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
APD00297.1|575433_576033_+	recombination protein RecR	NA	NA	NA	NA	NA
APD00298.1|576047_576299_+	DUF2508 family protein	NA	NA	NA	NA	NA
APD00299.1|576815_577481_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	52.7	1.4e-53
APD00300.1|577477_577807_+	hypothetical protein	NA	NA	NA	NA	NA
APD00301.1|577823_578843_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.5	2.1e-32
APD00302.1|578867_579215_+	initiation-control protein YabA	NA	M1PFV3	Streptococcus_phage	33.3	2.4e-12
APD00303.1|579313_580210_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	55.7	9.9e-82
APD00304.1|580213_580999_+	acyl-ACP thioesterase	NA	NA	NA	NA	NA
APD00305.1|581137_582133_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.5	2.0e-51
>prophage 3
CP013149	Lactobacillus plantarum strain MF1298, complete genome	3235952	1145796	1218346	3235952	holin,tRNA,capsid,tail,terminase,transposase,portal,head,protease,integrase	Lactobacillus_phage(77.55%)	71	1153027:1153043	1196816:1196832
APD00774.2|1145796_1146462_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
APD00775.2|1147154_1147634_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
APD00776.1|1147747_1148260_-	hypothetical protein	NA	NA	NA	NA	NA
APD00777.1|1148374_1148662_+	hypothetical protein	NA	NA	NA	NA	NA
APD00778.2|1148723_1150994_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	31.5	8.8e-119
APD00779.1|1151268_1152444_+|transposase	IS110 family transposase	transposase	Q9JMN8	Wolbachia_phage	30.0	4.2e-40
1153027:1153043	attL	AATTATGCCCCAGGCAG	NA	NA	NA	NA
APD00780.1|1153159_1154296_-|integrase	site-specific integrase	integrase	E9LUS1	Lactobacillus_phage	99.5	6.2e-214
APD00781.2|1154409_1155396_-	Abi family protein	NA	X2L062	Streptococcus_phage	30.8	2.1e-32
APD00782.1|1155855_1156218_-	hypothetical protein	NA	E9LUS2	Lactobacillus_phage	85.8	2.3e-53
APD00783.1|1156849_1157725_-	hypothetical protein	NA	NA	NA	NA	NA
APD00784.1|1157857_1158562_-	LexA family transcriptional regulator	NA	E9LUS8	Lactobacillus_phage	98.7	7.1e-128
APD00785.1|1158730_1158964_+	XRE family transcriptional regulator	NA	E9LUS9	Lactobacillus_phage	97.4	8.9e-35
APD00786.1|1158979_1159687_+	hypothetical protein	NA	E9LUT0	Lactobacillus_phage	84.4	1.1e-107
APD00787.1|1159701_1159926_+	hypothetical protein	NA	A0A182BQC3	Lactococcus_phage	58.8	2.7e-12
APD00788.1|1159903_1160392_-	hypothetical protein	NA	NA	NA	NA	NA
APD00789.1|1160487_1160817_+	DUF771 domain-containing protein	NA	E9LUT3	Lactobacillus_phage	84.4	5.6e-51
APD00790.1|1160906_1161086_+	DNA-binding protein	NA	E9LUT5	Lactobacillus_phage	100.0	2.2e-25
APD00791.1|1161119_1161374_+	hypothetical protein	NA	NA	NA	NA	NA
APD00792.1|1161376_1161577_+	hypothetical protein	NA	E9LUT7	Lactobacillus_phage	89.4	1.0e-26
APD00793.1|1161925_1162786_+	DUF1351 domain-containing protein	NA	A0A2D1GPE4	Lactobacillus_phage	35.6	7.6e-31
APD00794.1|1162785_1163412_+	single-stranded DNA-binding protein	NA	D7RWM8	Brochothrix_phage	37.4	1.4e-13
APD00795.1|1163408_1163870_+	single-stranded DNA-binding protein	NA	A0A218MNB4	uncultured_virus	70.9	1.4e-39
APD00796.1|1163885_1164452_+	HNH endonuclease	NA	A0A249XVQ5	Enterococcus_phage	34.6	1.8e-20
APD00797.1|1164457_1165150_+	hypothetical protein	NA	E9LUU3	Lactobacillus_phage	91.6	4.1e-120
APD00798.1|1165139_1165343_+	hypothetical protein	NA	NA	NA	NA	NA
APD00799.1|1165410_1166154_+	replisome organizer	NA	E9LUM6	Lactobacillus_phage	56.6	2.9e-39
APD00800.1|1166153_1166939_+	ATP-binding protein	NA	E9LUN6	Lactobacillus_phage	91.6	1.4e-132
APD00801.1|1167074_1167383_+	hypothetical protein	NA	E9LUN7	Lactobacillus_phage	90.2	3.0e-46
APD00802.1|1167484_1168204_+	SAM-dependent DNA methyltransferase	NA	D6PSV0	Lactobacillus_phage	94.9	1.3e-105
APD00803.1|1168537_1169047_+	DUF1642 domain-containing protein	NA	A0A2K9VC25	Lactobacillus_phage	62.7	7.9e-52
APD00804.1|1169043_1169391_+	hypothetical protein	NA	A0A142F1A4	Bacillus_phage	44.3	8.4e-13
AXN90775.1|1169387_1169558_+	hypothetical protein	NA	E9LUP4	Lactobacillus_phage	89.3	1.1e-18
APD00805.1|1169538_1169964_+	transcriptional regulator	NA	E9LUP5	Lactobacillus_phage	87.9	3.2e-67
APD00806.1|1170463_1170976_+	HNH endonuclease	NA	E9LUP7	Lactobacillus_phage	89.1	1.5e-79
APD00807.1|1171183_1171642_+|terminase	phage terminase small subunit P27 family	terminase	E9LUP8	Lactobacillus_phage	97.4	9.5e-81
APD00808.1|1173582_1173777_+	DUF1056 family protein	NA	E9LUQ0	Lactobacillus_phage	95.3	1.8e-25
APD00809.1|1173779_1174973_+|portal	phage portal protein	portal	E9LUQ1	Lactobacillus_phage	98.0	2.2e-222
APD00810.1|1174950_1175706_+|protease	Clp protease ClpP	protease	E9LUQ2	Lactobacillus_phage	92.4	1.3e-122
APD00811.1|1175705_1176938_+|capsid	phage major capsid protein	capsid	E9LUQ3	Lactobacillus_phage	91.6	1.4e-208
APD00812.1|1177010_1177349_+|head,tail	phage gp6-like head-tail connector protein	head,tail	E9LUQ4	Lactobacillus_phage	100.0	7.0e-57
APD00813.1|1177332_1177695_+|head,tail	head-tail adaptor protein	head,tail	E9LUQ5	Lactobacillus_phage	100.0	5.2e-66
APD00814.1|1177684_1178125_+|tail	phage tail protein	tail	E9LUQ6	Lactobacillus_phage	97.9	8.0e-77
APD00815.1|1178121_1178505_+	hypothetical protein	NA	E9LUQ7	Lactobacillus_phage	96.9	1.0e-64
APD00816.1|1178505_1179144_+|tail	phage tail protein	tail	E9LUQ8	Lactobacillus_phage	90.1	1.9e-103
APD00817.1|1179345_1179729_+	hypothetical protein	NA	E9LUQ9	Lactobacillus_phage	98.4	3.3e-63
APD00818.1|1179725_1179917_+	hypothetical protein	NA	E9LUR0	Lactobacillus_phage	100.0	1.5e-27
APD00820.1|1185538_1187311_+|tail	phage tail protein	tail	E9LUR2	Lactobacillus_phage	95.9	0.0e+00
APD00821.1|1187377_1189735_+	hypothetical protein	NA	E9LUR3	Lactobacillus_phage	90.9	0.0e+00
APD00822.1|1189736_1193312_+|tail	phage tail protein	tail	E9LUR4	Lactobacillus_phage	64.0	1.6e-244
APD00823.1|1193304_1193556_+	hypothetical protein	NA	A0A2K9VDF6	Lactobacillus_phage	91.5	1.0e-28
APD00824.1|1194219_1194759_+	hypothetical protein	NA	A0A1I9KKB3	Lactobacillus_phage	56.7	2.0e-53
APD02633.2|1194770_1195925_+	LysM peptidoglycan-binding domain-containing protein	NA	O03950	Lactobacillus_phage	36.9	3.1e-43
APD00825.1|1195924_1196188_+|holin	holin	holin	E9LUR9	Lactobacillus_phage	94.3	5.3e-36
APD00826.2|1196202_1196577_+|holin	holin	holin	A0A2P0ZLG6	Lactobacillus_phage	59.8	1.0e-11
APD00827.1|1197153_1197579_-	lipoprotein	NA	NA	NA	NA	NA
1196816:1196832	attR	AATTATGCCCCAGGCAG	NA	NA	NA	NA
AXN90776.1|1197591_1197711_-	hypothetical protein	NA	NA	NA	NA	NA
APD00828.2|1197743_1198814_-	hypothetical protein	NA	NA	NA	NA	NA
APD00829.2|1198868_1199384_+	GtrA family protein	NA	NA	NA	NA	NA
APD00830.2|1199483_1199843_-	DUF1516 family protein	NA	NA	NA	NA	NA
APD00831.1|1199915_1201772_-	bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
APD00832.1|1201785_1204092_-	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase	NA	NA	NA	NA	NA
APD00833.1|1204980_1206618_+	sulfotransferase family protein	NA	NA	NA	NA	NA
APD00834.1|1206595_1207771_+	sulfate adenylyltransferase	NA	A0A2P1ELS9	Moumouvirus	31.7	3.8e-49
APD00835.1|1207773_1208397_+	adenylyl-sulfate kinase	NA	A0A2K9L4R9	Tupanvirus	40.6	6.3e-27
APD02634.2|1208365_1209343_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
APD00836.1|1209564_1211304_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
APD00837.1|1211736_1213512_+	SLC13 family permease	NA	NA	NA	NA	NA
APD00838.1|1213786_1215178_+	MATE family efflux transporter	NA	NA	NA	NA	NA
APD00839.1|1215304_1215550_+	DUF2187 domain-containing protein	NA	NA	NA	NA	NA
APD00840.1|1215939_1216386_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
APD00841.1|1216657_1218346_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.9	1.2e-75
>prophage 4
CP013149	Lactobacillus plantarum strain MF1298, complete genome	3235952	1246933	1258899	3235952		Lactobacillus_phage(87.5%)	9	NA	NA
APD00863.1|1246933_1247881_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	100.0	2.7e-178
APD00864.1|1248224_1248839_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	100.0	6.3e-112
APD00865.1|1248841_1251280_+	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	99.8	0.0e+00
APD00866.1|1251367_1251928_+	hypothetical protein	NA	A0A2P0ZL75	Lactobacillus_phage	100.0	2.7e-101
APD00867.1|1251998_1252439_-	nucleoside 2-deoxyribosyltransferase	NA	A0A2P0ZL88	Lactobacillus_phage	98.6	5.2e-76
APD00868.1|1252783_1253251_+	hypothetical protein	NA	A0A2P0ZL91	Lactobacillus_phage	99.4	6.1e-83
APD00869.1|1253225_1254200_+	hypothetical protein	NA	A0A2P0ZL95	Lactobacillus_phage	90.7	5.0e-31
APD00870.1|1254303_1254513_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
APD00871.1|1256625_1258899_-	HAD family hydrolase	NA	M1HX51	Paramecium_bursaria_Chlorella_virus	23.5	1.3e-37
>prophage 5
CP013149	Lactobacillus plantarum strain MF1298, complete genome	3235952	2091773	2145480	3235952	holin,capsid,tail,terminase,transposase,portal,head,protease,integrase	Lactobacillus_phage(36.11%)	61	2132332:2132345	2144271:2144284
APD01620.1|2091773_2093504_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.6	2.6e-46
APD01621.1|2093727_2094120_-	YxeA family protein	NA	NA	NA	NA	NA
APD01622.1|2094342_2095194_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
APD01623.1|2095190_2095349_-	cytochrome D ubiquinol oxidase	NA	NA	NA	NA	NA
APD01624.1|2096115_2096652_-|holin	holin	holin	E9LUS0	Lactobacillus_phage	98.8	6.4e-36
APD01625.1|2096663_2096927_-|holin	holin	holin	E9LUR9	Lactobacillus_phage	100.0	2.0e-38
APD01626.1|2096926_2098105_-	LysM peptidoglycan-binding domain-containing protein	NA	E9LUR8	Lactobacillus_phage	88.3	1.1e-197
APD01627.1|2098232_2098667_-	hypothetical protein	NA	NA	NA	NA	NA
APD01628.1|2098669_2099119_-	DUF1617 family protein	NA	A0A2P0ZLE0	Lactobacillus_phage	40.5	6.8e-23
APD01629.1|2099125_2104447_-	hypothetical protein	NA	Q6SE68	Lactobacillus_prophage	59.4	6.4e-144
APD01630.2|2104461_2104794_-	hypothetical protein	NA	V5UQS8	Oenococcus_phage	73.4	2.2e-42
APD01631.1|2104837_2110669_-|tail	phage tail protein	tail	V5URV5	Oenococcus_phage	40.7	1.2e-223
APD02655.1|2110684_2110948_-	hypothetical protein	NA	V9QKH3	Oenococcus_phage	65.4	2.3e-23
APD01632.1|2111055_2111454_-	hypothetical protein	NA	V9QJA0	Oenococcus_phage	74.0	6.6e-46
APD01633.2|2111553_2111937_-|tail	phage tail protein	tail	V5USQ9	Oenococcus_phage	58.4	1.8e-37
APD01634.1|2112038_2112404_-	hypothetical protein	NA	V5UQS4	Oenococcus_phage	53.4	3.0e-29
APD01635.1|2112403_2112955_-	HK97 gp10 family phage protein	NA	V5URV0	Oenococcus_phage	61.7	3.3e-64
APD01636.1|2112956_2113304_-	hypothetical protein	NA	V5US85	Oenococcus_phage	62.3	3.2e-36
APD01637.1|2113303_2113636_-	hypothetical protein	NA	V9QJ97	Oenococcus_phage	45.3	1.8e-12
APD01638.1|2113647_2113824_-	conjugal transfer protein	NA	NA	NA	NA	NA
APD01639.1|2113836_2114859_-|capsid	minor capsid protein E	capsid	V5US24	Oenococcus_phage	62.2	1.4e-116
APD01640.1|2114878_2115229_-	hypothetical protein	NA	V5UTH9	Oenococcus_phage	63.8	1.5e-30
APD01641.1|2115243_2115921_-	DUF4355 domain-containing protein	NA	Q6SE80	Lactobacillus_prophage	33.5	6.4e-17
APD01642.1|2116093_2116300_-	hypothetical protein	NA	NA	NA	NA	NA
APD01643.2|2116351_2116552_-	hypothetical protein	NA	NA	NA	NA	NA
APD01644.1|2116604_2118290_-|head	phage head morphogenesis protein	head	V5US81	Oenococcus_phage	58.8	9.1e-121
APD01645.1|2118436_2118733_-|protease	ribosomal-processing cysteine protease Prp	protease	D2J003	Enterococcus_phage	39.2	1.5e-10
APD01646.1|2118662_2120171_-|portal	phage portal protein	portal	V5US18	Oenococcus_phage	51.8	1.2e-135
APD01647.1|2120182_2121421_-|terminase	PBSX family phage terminase large subunit	terminase	M1PG09	Streptococcus_phage	61.3	1.9e-139
APD01648.1|2121410_2121938_-|terminase	terminase small subunit	terminase	O03926	Lactobacillus_phage	75.7	4.5e-58
APD01650.1|2122364_2122562_-	hypothetical protein	NA	NA	NA	NA	NA
APD01651.1|2123325_2124597_-	hypothetical protein	NA	NA	NA	NA	NA
APD01652.1|2124612_2125482_-	DNA adenine methylase	NA	A0A1S5PRR3	Streptococcus_phage	51.4	8.9e-80
APD01653.1|2126256_2126718_-	transcriptional regulator	NA	D6PSV8	Lactobacillus_phage	57.0	6.3e-40
APD01654.1|2126928_2127309_-	hypothetical protein	NA	NA	NA	NA	NA
APD01655.1|2127305_2127824_-	hypothetical protein	NA	O03915	Lactobacillus_phage	69.1	2.9e-54
APD01656.1|2127820_2128108_-	hypothetical protein	NA	NA	NA	NA	NA
APD01657.1|2128104_2129013_-	DnaD domain protein	NA	NA	NA	NA	NA
APD02656.2|2129091_2129952_-	hypothetical protein	NA	A0A0P0IZH9	Lactobacillus_phage	50.6	3.8e-75
APD01658.1|2129875_2130763_-	recombinase RecT	NA	E9LUM3	Lactobacillus_phage	47.0	1.6e-60
APD01659.2|2130759_2131146_-	hypothetical protein	NA	NA	NA	NA	NA
AXN90803.1|2131278_2131449_-	hypothetical protein	NA	NA	NA	NA	NA
APD01660.1|2131516_2132029_-	XRE family transcriptional regulator	NA	D6PST4	Lactobacillus_phage	43.5	8.0e-28
APD01661.1|2132096_2132402_-	DUF771 domain-containing protein	NA	NA	NA	NA	NA
2132332:2132345	attL	TCGTATTCTTCTTC	NA	NA	NA	NA
APD01662.1|2132742_2132943_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
APD01663.1|2133089_2133326_+	XRE family transcriptional regulator	NA	A0A0K2CNE2	Brevibacillus_phage	30.7	8.5e-09
APD01664.1|2133363_2133678_+	hypothetical protein	NA	NA	NA	NA	NA
APD01665.1|2133750_2133981_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
APD01666.1|2134154_2134517_+	helix-turn-helix domain-containing protein	NA	A0A0U4KKM4	Exiguobacterium_phage	32.0	2.6e-09
APD01667.1|2134528_2134942_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0M4RD70	Bacillus_phage	31.3	3.4e-05
APD01668.1|2134967_2136314_+	DUF4041 domain-containing protein	NA	A0A1B0Y697	Lactobacillus_phage	52.7	3.9e-82
APD01669.1|2136363_2137065_+	DUF3862 domain-containing protein	NA	A0A0P0IXE0	Lactobacillus_phage	80.8	2.0e-05
APD01670.1|2137836_2138214_+	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
APD01671.1|2138240_2138600_+	hypothetical protein	NA	NA	NA	NA	NA
APD01672.1|2138630_2138912_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
APD01673.1|2139660_2140755_+	hypothetical protein	NA	NA	NA	NA	NA
APD01674.1|2141044_2142166_+|integrase	site-specific integrase	integrase	D6PSS4	Lactobacillus_phage	32.7	9.9e-47
APD01675.1|2142516_2142723_-	hypothetical protein	NA	NA	NA	NA	NA
APD01676.1|2143135_2143369_+	hypothetical protein	NA	NA	NA	NA	NA
APD01677.1|2143393_2143666_+	hypothetical protein	NA	NA	NA	NA	NA
APD01678.1|2143824_2145480_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	41.5	4.6e-93
2144271:2144284	attR	GAAGAAGAATACGA	NA	NA	NA	NA
>prophage 6
CP013149	Lactobacillus plantarum strain MF1298, complete genome	3235952	2346251	2354765	3235952		Synechococcus_phage(33.33%)	9	NA	NA
APD01838.1|2346251_2346830_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	1.9e-22
APD01839.1|2346822_2347848_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	41.7	8.4e-61
APD01840.1|2347844_2349299_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.0	2.5e-50
APD01841.1|2349283_2351503_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.1	3.5e-144
APD02662.2|2351495_2352176_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
APD01842.1|2352175_2352430_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
APD01843.1|2352431_2353163_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4SM18	Cyanophage	37.3	2.1e-37
APD01844.1|2353165_2354296_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
APD01845.1|2354279_2354765_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	41.0	2.3e-16
>prophage 1
CP013155	Lactobacillus plantarum strain MF1298 plasmid pMF1298-5, complete sequence	37426	8895	18090	37426	transposase	unidentified_phage(33.33%)	6	NA	NA
AXN90893.1|8895_9825_+|transposase	IS30 family transposase	transposase	H7BW47	unidentified_phage	34.1	6.7e-25
APD02875.2|9839_11879_-	RNA-directed DNA polymerase	NA	A0A0H4TEY7	Erysipelothrix_phage	27.4	2.0e-29
APD02874.1|12123_13293_+	RNA-directed DNA polymerase	NA	H7BUU7	unidentified_phage	27.0	3.0e-06
APD02873.1|13696_14278_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	34.7	2.4e-20
APD02872.1|14679_15603_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	40.3	6.6e-49
APD02871.1|15840_18090_+	ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent	NA	S5Y360	Mycobacterium_phage	33.8	1.9e-89
