The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP020411	Haemophilus influenzae strain FDAARGOS_199 chromosome, complete genome	1830681	477147	530339	1830681	tRNA,head,holin,plate,tail	Shigella_phage(25.58%)	62	NA	NA
ARB89429.1|477147_477945_-|holin	LPS cholinephosphotransferase LicD	holin	A0A1V0SD50	Indivirus	53.7	7.8e-06
ARB89430.1|477944_478646_-	protein LicC	NA	NA	NA	NA	NA
ARB89431.1|478642_479521_-	protein LicB	NA	NA	NA	NA	NA
ARB89432.2|479520_480501_-	protein licA	NA	NA	NA	NA	NA
ARB89433.1|480575_482588_-|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	tRNA	NA	NA	NA	NA
ARB89434.1|482736_483957_+	3-oxoacyl-ACP synthase I	NA	NA	NA	NA	NA
ARB89435.1|484023_484287_-	glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	71.4	3.2e-25
ARB89436.1|484402_485311_+	30S ribosomal protein S6--L-glutamate ligase	NA	A0A1D7SR78	Cyanophage	31.4	5.9e-34
ARB89437.1|485349_486564_-	sodium/glutamate symport carrier protein	NA	NA	NA	NA	NA
AVH82714.1|486605_488849_-	DNA topoisomerase 4 subunit A	NA	G3M9Z5	Bacillus_virus	36.2	2.6e-86
ARB89438.1|488915_490814_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	35.9	1.0e-96
ARB89439.1|490887_491823_-	lipid A biosynthesis lauroyltransferase	NA	A0A1W6JP29	Morganella_phage	38.8	1.2e-50
ARB89440.1|491919_493350_+	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	NA	E3SJ88	Synechococcus_phage	44.6	4.1e-21
ARB89441.1|493536_494274_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
ARB89443.1|494827_495718_-	hypothetical protein	NA	F6MIM2	Haemophilus_phage	72.1	3.6e-116
ARB89444.1|495728_495848_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
ARB89445.1|496092_496329_-	hypothetical protein	NA	A0A0M3LSI9	Mannheimia_phage	74.0	4.2e-32
ARB89446.1|496331_498203_-|tail	phage tail fiber protein	tail	A0A0M3LRW6	Mannheimia_phage	45.2	2.8e-46
ARB90656.1|498202_498763_-	DUF2313 domain-containing protein	NA	A0A2I7S9L6	Vibrio_phage	34.6	1.7e-23
ARB89447.1|498795_499863_-	hypothetical protein	NA	A0A0C4UQU9	Shigella_phage	43.1	4.6e-70
ARB89448.1|499862_500270_-	hypothetical protein	NA	A0A0C4UR04	Shigella_phage	43.3	2.3e-22
ARB89449.1|500278_500827_-|plate	phage baseplate protein	plate	A0A2I7S9F6	Vibrio_phage	44.0	4.7e-26
ARB89450.1|500863_501340_-|tail	phage tail protein	tail	C9DGQ3	Escherichia_phage	38.9	2.7e-14
ARB89451.1|501339_502125_-|tail	phage tail protein	tail	A0A0C4UQS1	Shigella_phage	37.9	1.9e-44
ARB89452.1|502124_503492_-	DNA circularization protein	NA	A0A0C4UR32	Shigella_phage	29.8	8.4e-40
ARB89453.1|503491_505387_-	tape measure domain-containing protein	NA	A0A2I7S9D9	Vibrio_phage	33.7	1.7e-54
ARB89454.1|505467_505851_-	hypothetical protein	NA	C9DGP9	Escherichia_phage	49.6	5.6e-18
ARB89455.1|505863_506220_-|tail	phage tail tube protein	tail	A0A0C4UQZ1	Shigella_phage	36.0	4.3e-12
ARB89456.1|506229_507693_-|tail	phage tail sheath protein	tail	A0A0C4UQS0	Shigella_phage	46.6	6.3e-118
ARB89457.1|507692_507884_-	DUF2635 domain-containing protein	NA	NA	NA	NA	NA
ARB89458.1|507896_508448_-	DUF1834 domain-containing protein	NA	A0A0C4UQU7	Shigella_phage	42.0	2.6e-32
ARB89459.1|508447_508873_-	hypothetical protein	NA	A0A0C4UR02	Shigella_phage	37.4	1.3e-15
ARB89460.1|508875_509262_-	hypothetical protein	NA	NA	NA	NA	NA
ARB89461.1|509344_510271_-|head	phage head protein	head	A0SMP3	Pseudomonas_virus	52.9	1.3e-76
ARB89462.1|510270_511338_-	hypothetical protein	NA	A0A0C4UQU6	Shigella_phage	47.8	4.3e-76
ARB89463.1|511569_512010_-	phage virion morphogenesis protein	NA	NA	NA	NA	NA
ARB90657.1|512147_513392_-|head	phage head morphogenesis protein	head	C9DGN7	Escherichia_phage	40.9	1.4e-81
ARB89464.1|513483_515046_-	hypothetical protein	NA	A0A0C4UQR8	Shigella_phage	53.1	9.9e-146
ARB89465.1|515057_516584_-	hypothetical protein	NA	A0A2I7S9C5	Vibrio_phage	58.7	1.0e-158
ARB89466.1|516583_517153_-	DUF3486 domain-containing protein	NA	A0A2I7S9D1	Vibrio_phage	44.8	6.5e-39
AVH82715.1|517175_517472_-	hypothetical protein	NA	A0A2I7S9D8	Vibrio_phage	62.5	5.3e-24
ARB89467.1|517476_517896_-	DUF2730 domain-containing protein	NA	NA	NA	NA	NA
ARB89468.1|517802_518030_-	hypothetical protein	NA	NA	NA	NA	NA
ARB89469.1|518147_518402_-	DUF2681 domain-containing protein	NA	NA	NA	NA	NA
ARB89470.1|518398_518659_-	DUF2644 domain-containing protein	NA	F6MIK0	Haemophilus_phage	56.7	1.8e-12
ARB89471.1|518665_519211_-	N-acetylmuramoyl-L-alanine amidase	NA	F6MIJ9	Haemophilus_phage	72.1	1.1e-78
ARB89472.1|519292_519799_-	hypothetical protein	NA	A0A1I9KF52	Aeromonas_phage	33.5	1.9e-13
ARB89473.1|519807_520242_-	transcriptional regulator	NA	A0A0C4UQZ9	Shigella_phage	44.0	1.7e-23
ARB89474.1|520434_520989_-	hypothetical protein	NA	A0A0M3LPP6	Mannheimia_phage	54.6	8.3e-47
ARB89475.1|520985_521543_-	DUF1018 domain-containing protein	NA	A0A2I7S9B8	Vibrio_phage	30.6	1.4e-14
ARB89476.1|521716_522277_-	hypothetical protein	NA	A0A0M3LP85	Mannheimia_phage	35.2	7.2e-22
ARB89477.1|522279_522453_-	hypothetical protein	NA	NA	NA	NA	NA
ARB89478.1|522452_522674_-	hypothetical protein	NA	NA	NA	NA	NA
ARB89479.1|522853_523147_-	hypothetical protein	NA	NA	NA	NA	NA
ARB89480.1|523304_523814_-	nuclease inhibitor	NA	F6MIJ0	Haemophilus_phage	77.7	1.6e-65
ARB89481.1|523828_524146_-	hypothetical protein	NA	A0A0M3LQH1	Mannheimia_phage	50.5	1.1e-16
ARB89482.1|525105_525576_+	hypothetical protein	NA	NA	NA	NA	NA
ARB89483.1|525508_525781_-	hypothetical protein	NA	NA	NA	NA	NA
ARB89484.1|525837_527901_-	DDE endonuclease	NA	A0A2P9JZG7	Alteromonadaceae_phage	42.9	4.4e-125
ARB89485.1|527934_528204_-	transcriptional regulator	NA	F6MII4	Haemophilus_phage	60.5	4.6e-19
ARB89486.1|528431_529151_+	transcriptional regulator	NA	F6MII3	Haemophilus_phage	53.1	1.0e-65
ARB89488.1|529739_530339_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	5.3e-15
>prophage 2
CP020411	Haemophilus influenzae strain FDAARGOS_199 chromosome, complete genome	1830681	576040	632575	1830681	tRNA,head,terminase,holin,integrase,protease	Haemophilus_phage(24.0%)	55	568434:568450	599624:599640
568434:568450	attL	ATATTTTGACCGCACTT	NA	NA	NA	NA
ARB89540.1|576040_576955_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	52.2	1.5e-80
ARB89541.1|576955_577240_-	hypothetical protein	NA	NA	NA	NA	NA
ARB89542.1|577527_578103_-	hypothetical protein	NA	A0A0M3LQ72	Mannheimia_phage	55.2	5.2e-52
ARB89543.1|578171_578534_+	hypothetical protein	NA	NA	NA	NA	NA
ARB89544.1|578564_578858_-	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	46.6	8.3e-14
ARB89545.1|578854_579154_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	45.3	7.9e-20
ARB89546.1|580519_580876_+|holin	phage holin, lambda family	holin	NA	NA	NA	NA
ARB89547.1|580844_581447_+	hypothetical protein	NA	Q7Y5V0	Haemophilus_phage	53.4	2.1e-56
ARB89548.1|581439_581715_+	DUF2570 domain-containing protein	NA	Q7Y5U9	Haemophilus_phage	47.2	2.5e-12
ARB89549.1|581626_581908_+	hypothetical protein	NA	Q776X1	Haemophilus_phage	73.3	9.4e-31
ARB89550.1|582035_582557_+	hypothetical protein	NA	A0A0P0HSR5	Acinetobacter_phage	34.9	2.8e-20
ARB89551.1|582566_583082_+|terminase	terminase small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	40.9	5.6e-21
ARB89552.1|583068_584412_+|terminase	PBSX family phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	54.1	3.1e-124
ARB89553.1|584413_585724_+	DUF1073 domain-containing protein	NA	Q7Y5U6	Haemophilus_phage	84.2	1.3e-210
ARB89554.1|585647_586991_+|head	phage head morphogenesis protein	head	Q7Y5U5	Haemophilus_phage	77.9	3.3e-105
ARB89555.1|587478_587835_+	DUF2513 domain-containing protein	NA	NA	NA	NA	NA
ARB89556.1|587895_588996_+	DUF2213 domain-containing protein	NA	Q7Y5U2	Haemophilus_phage	85.9	3.1e-138
ARB89557.1|589493_590042_+	hypothetical protein	NA	Q94MY0	Haemophilus_virus	49.2	1.1e-19
ARB89558.1|589978_590281_+	hypothetical protein	NA	NA	NA	NA	NA
ARB89559.1|590510_591530_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
ARB89560.1|591529_592354_+	phosphatase	NA	NA	NA	NA	NA
ARB89561.1|592452_593061_-	hypothetical protein	NA	NA	NA	NA	NA
ARB89562.1|593188_594583_-	class II fumarate hydratase	NA	NA	NA	NA	NA
ARB89563.1|594817_595252_+	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
ARB89564.1|595496_595895_+	hypothetical protein	NA	NA	NA	NA	NA
ARB89565.1|595922_596090_+	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
ARB89566.1|596116_596488_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
ARB89567.1|596435_597338_+	type-2 restriction enzyme HindIII	NA	NA	NA	NA	NA
AVH82717.1|597318_598248_+	restriction endonuclease subunit M	NA	E5ERN0	Ostreococcus_lucimarinus_virus	30.2	3.6e-26
ARB89568.1|598248_601113_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.3	3.0e-148
599624:599640	attR	AAGTGCGGTCAAAATAT	NA	NA	NA	NA
ARB89569.1|601146_601419_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
ARB89570.1|601480_602914_-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase	NA	A0A0P0IR83	Acinetobacter_phage	38.0	2.7e-33
ARB89571.1|602950_603952_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.4	1.4e-44
ARB89572.1|604004_604391_-	tautomerase family protein	NA	NA	NA	NA	NA
ARB89573.1|604439_605021_-	glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	40.4	4.5e-35
ARB89574.1|605033_606590_-	anthranilate synthase component I	NA	A0A0B5J984	Pandoravirus	33.2	1.8e-22
ARB89575.1|607511_608009_-	non-heme ferritin	NA	NA	NA	NA	NA
ARB89576.1|608024_608573_-	non-heme ferritin	NA	NA	NA	NA	NA
ARB90658.1|609029_610034_+	phosphate ABC transporter substrate-binding protein PstS	NA	A0A222YW41	Synechococcus_phage	40.5	9.1e-52
ARB89577.1|610124_611072_+	phosphate ABC transporter permease	NA	NA	NA	NA	NA
ARB89578.1|611073_611922_+	phosphate ABC transporter permease	NA	NA	NA	NA	NA
ARB89579.1|611931_612699_+	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.6e-16
ARB89580.1|612793_613489_+	DNA-binding response regulator	NA	NA	NA	NA	NA
ARB89581.1|613485_614763_+	phosphate regulon sensor histidine kinase PhoR	NA	W8CYF6	Bacillus_phage	31.0	2.4e-25
ARB89582.1|615453_616875_-	exodeoxyribonuclease I	NA	NA	NA	NA	NA
ARB89583.1|616887_617763_-	hypothetical protein	NA	NA	NA	NA	NA
ARB89584.1|617765_618674_-	hypothetical protein	NA	NA	NA	NA	NA
ARB89585.1|618744_623277_-	chromosome partition protein MukB	NA	NA	NA	NA	NA
ARB89586.1|623276_624008_-	condensin subunit E	NA	NA	NA	NA	NA
ARB89587.1|624054_625389_-	condensin subunit F	NA	NA	NA	NA	NA
ARB89588.1|625538_626480_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	83.1	5.4e-123
ARB89589.1|626481_626811_+	sulfurtransferase TusE	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	51.9	3.4e-24
ARB89590.1|626918_627128_+	molybdenum-pterin-binding protein	NA	NA	NA	NA	NA
AVH82718.1|627171_629691_+	TonB-dependent receptor	NA	NA	NA	NA	NA
ARB89591.1|629794_632575_+|protease	zinc protease	protease	NA	NA	NA	NA
>prophage 3
CP020411	Haemophilus influenzae strain FDAARGOS_199 chromosome, complete genome	1830681	830856	839370	1830681		uncultured_Caudovirales_phage(16.67%)	9	NA	NA
ARB89745.1|830856_831540_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.2	2.3e-54
ARB89746.1|831532_831958_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.7	1.3e-20
ARB89747.1|831958_832594_+	7-carboxy-7-deazaguanine synthase	NA	S4TZT1	uncultured_phage	30.3	8.7e-16
ARB89748.1|832988_833222_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
AVH82727.1|833205_835389_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.4	1.1e-115
ARB89749.1|835508_836480_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
ARB89750.1|836494_837382_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
ARB89751.1|837391_838384_+	dipeptide transport ATP-binding protein DppD	NA	G3M9Y6	Bacillus_virus	30.8	2.0e-14
ARB89752.1|838386_839370_+	dipeptide transport ATP-binding protein DppF	NA	G9BWD6	Planktothrix_phage	32.8	1.8e-20
>prophage 4
CP020411	Haemophilus influenzae strain FDAARGOS_199 chromosome, complete genome	1830681	971632	983720	1830681		Escherichia_phage(71.43%)	12	NA	NA
ARB89874.1|971632_973477_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.3	2.8e-22
ARB89875.1|973601_973880_-	copper chaperone	NA	NA	NA	NA	NA
ARB90661.1|973888_974182_-	hypothetical protein	NA	NA	NA	NA	NA
ARB89876.1|974225_975335_-	transglutaminase family protein	NA	NA	NA	NA	NA
ARB89877.1|975588_978009_+	dimethyl sulfoxide reductase DmsA	NA	A0A077SK27	Escherichia_phage	50.6	4.8e-224
ARB89878.1|978019_978637_+	dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	56.8	2.2e-72
ARB89879.1|978638_979478_+	dimethyl sulfoxide reductase subunit C	NA	A0A077SK59	Escherichia_phage	31.4	5.5e-18
ARB89880.1|979589_980201_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	32.5	1.0e-21
ARB89881.1|980200_980701_+	ferredoxin-type protein NapF	NA	A0A077SLP0	Escherichia_phage	32.6	3.8e-14
ARB90662.1|980978_981227_+	methionine synthase	NA	NA	NA	NA	NA
ARB89882.1|981220_982660_+	meth protein	NA	NA	NA	NA	NA
ARB89883.1|982805_983720_-	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	30.6	2.7e-26
>prophage 5
CP020411	Haemophilus influenzae strain FDAARGOS_199 chromosome, complete genome	1830681	1761129	1764882	1830681		uncultured_virus(100.0%)	7	NA	NA
ARB90582.1|1761129_1761336_+	copper chaperone	NA	A0A218MNH0	uncultured_virus	52.2	3.0e-10
ARB90583.1|1761410_1761617_+	copper chaperone	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
ARB90584.1|1761690_1761897_+	copper chaperone	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
ARB90585.1|1761971_1762178_+	copper chaperone	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
ARB90586.1|1762252_1762459_+	copper chaperone	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
ARB90587.1|1762532_1762739_+	copper chaperone	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
ARB90588.1|1762713_1764882_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	51.4	6.7e-193
