assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002089075.2_ASM208907v2	CP019593	Staphylococcus aureus strain GD705 chromosome, complete genome	1	260724-260923	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	31	2	2	260755-260779|260811-260835	CP019593.2_260924-260948|CP019593.2_2115226-2115250	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA,NA|131aa|down_5|CP019593.2_266099_266492_+	NA|574aa|up_9|CP019593.2_248170_249892_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_8|CP019593.2_250035_250710_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|580aa|up_7|CP019593.2_250971_252711_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_6|CP019593.2_252713_253454_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|up_5|CP019593.2_253566_254010_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_4|CP019593.2_254002_254704_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|764aa|up_3|CP019593.2_255044_257336_+	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]	NA|235aa|up_2|CP019593.2_257561_258266_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|CP019593.2_258414_259206_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|479aa|up_0|CP019593.2_259221_260658_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|254aa|down_0|CP019593.2_261233_261995_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|305aa|down_1|CP019593.2_262246_263161_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_2|CP019593.2_263188_263593_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_3|CP019593.2_263607_264489_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_4|CP019593.2_264720_265719_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|131aa|down_5|CP019593.2_266099_266492_+	NA	NA|459aa|down_6|CP019593.2_266620_267997_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_7|CP019593.2_268230_269223_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|317aa|down_8|CP019593.2_269548_270499_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|220aa|down_9|CP019593.2_270550_271210_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCA_002089075.2_ASM208907v2	CP019593	Staphylococcus aureus strain GD705 chromosome, complete genome	2	614719-614827	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA,NA|169aa|down_4|CP019593.2_618560_619067_+,NA|239aa|down_5|CP019593.2_619228_619945_+	NA|209aa|up_9|CP019593.2_604223_604850_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_8|CP019593.2_605119_606058_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_7|CP019593.2_606503_607040_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_6|CP019593.2_607209_607686_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_5|CP019593.2_607725_609021_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_4|CP019593.2_609048_609570_+	pfam08741, YwhD, YwhD family	NA|337aa|up_3|CP019593.2_610068_611079_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|128aa|up_2|CP019593.2_611387_611771_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|CP019593.2_611767_613429_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|CP019593.2_613913_614549_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|CP019593.2_614938_615766_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|CP019593.2_615916_616867_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|CP019593.2_616921_617641_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|CP019593.2_617624_618425_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|CP019593.2_618560_619067_+	NA	NA|239aa|down_5|CP019593.2_619228_619945_+	NA	NA|263aa|down_6|CP019593.2_620113_620902_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|CP019593.2_621165_621540_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|CP019593.2_622487_623417_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|CP019593.2_623609_623834_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_002089075.2_ASM208907v2	CP019593	Staphylococcus aureus strain GD705 chromosome, complete genome	3	776805-776893	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	TCTGTGTTGGGGCCCACACCCCAACTCGCATT	32	1	19	776837-776861|776837-776861|776837-776861|776837-776861|776837-776861|776837-776861|776837-776861|776837-776861|776837-776861|776837-776861|776837-776861|776837-776861|776837-776861|776837-776861|776837-776861|776837-776861|776837-776861|776837-776861|776837-776861	CP019593.2_891983-892007|CP019593.2_242726-242750|CP019593.2_242784-242808|CP019593.2_242842-242866|CP019593.2_336545-336521|CP019593.2_606226-606202|CP019593.2_871241-871217|CP019593.2_984951-984975|CP019593.2_1085299-1085275|CP019593.2_1085353-1085329|CP019593.2_1829629-1829605|CP019593.2_1927281-1927305|CP019593.2_1927391-1927415|CP019593.2_2291982-2292006|CP019593.2_2737798-2737822|CP019593.2_785818-785842|CP019593.2_1085245-1085221|CP019593.2_1652827-1652851|CP019593.2_2337126-2337102	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|77aa|up_6|CP019593.2_771104_771335_-,NA|32aa|up_5|CP019593.2_771350_771446_-,NA	NA|79aa|up_9|CP019593.2_765730_765967_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_8|CP019593.2_766235_768221_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_7|CP019593.2_768228_771075_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|77aa|up_6|CP019593.2_771104_771335_-	NA	NA|32aa|up_5|CP019593.2_771350_771446_-	NA	NA|311aa|up_4|CP019593.2_771684_772617_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|CP019593.2_772622_773462_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|CP019593.2_773469_773955_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|CP019593.2_773962_775402_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_0|CP019593.2_775468_776404_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|CP019593.2_777171_778083_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|CP019593.2_778079_779075_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|CP019593.2_779183_780128_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|CP019593.2_780697_781285_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|545aa|down_4|CP019593.2_781467_783102_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|301aa|down_5|CP019593.2_783308_784211_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_6|CP019593.2_784913_785543_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_7|CP019593.2_786317_787331_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_8|CP019593.2_787383_788394_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_9|CP019593.2_788532_789723_+	PRK00073, pgk, phosphoglycerate kinase; Provisional
GCA_002089075.2_ASM208907v2	CP019593	Staphylococcus aureus strain GD705 chromosome, complete genome	4	826269-826349	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	TCTTTATCATTTCTGTCCCACTCCC	25	1	1	826294-826324	CP019593.2_771274-771244	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|38aa|up_7|CP019593.2_820511_820625_+,NA|65aa|up_0|CP019593.2_825842_826037_-,NA|105aa|down_7|CP019593.2_833955_834270_-	NA|119aa|up_9|CP019593.2_819552_819909_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_8|CP019593.2_820066_820447_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_7|CP019593.2_820511_820625_+	NA	NA|293aa|up_6|CP019593.2_820626_821505_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|up_5|CP019593.2_822206_822593_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|up_4|CP019593.2_822585_822882_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|up_3|CP019593.2_823131_824157_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|up_2|CP019593.2_824149_824845_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|up_1|CP019593.2_824862_825684_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|up_0|CP019593.2_825842_826037_-	NA	NA|65aa|down_0|CP019593.2_826491_826686_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_1|CP019593.2_826919_827771_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_2|CP019593.2_828098_828860_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_3|CP019593.2_828958_830266_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_4|CP019593.2_830380_831622_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|155aa|down_5|CP019593.2_831611_832076_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|466aa|down_6|CP019593.2_832226_833624_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|105aa|down_7|CP019593.2_833955_834270_-	NA	NA|347aa|down_8|CP019593.2_834638_835679_+	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|356aa|down_9|CP019593.2_835692_836760_+	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
GCA_002089075.2_ASM208907v2	CP019593	Staphylococcus aureus strain GD705 chromosome, complete genome	5	1738810-1738943	1,5	PILER-CR,CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	TGCAAGTTGGGCTGGGGCCCCAACATAGAGAA,TGCAAGTTGGGGTGGGGCCCCAACATAGA	32,29	1	25	1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866|1738842-1738866	CP019593.2_730521-730545|CP019593.2_2029418-2029394|CP019593.2_730312-730336|CP019593.2_821874-821850|CP019593.2_892005-891981|CP019593.2_1741222-1741246|CP019593.2_242748-242724|CP019593.2_242806-242782|CP019593.2_242864-242840|CP019593.2_336523-336547|CP019593.2_606204-606228|CP019593.2_871219-871243|CP019593.2_984973-984949|CP019593.2_1085166-1085190|CP019593.2_1085277-1085301|CP019593.2_1085331-1085355|CP019593.2_1829607-1829631|CP019593.2_1927303-1927279|CP019593.2_1927413-1927389|CP019593.2_2292004-2291980|CP019593.2_2302752-2302728|CP019593.2_2302807-2302783|CP019593.2_2302862-2302838|CP019593.2_2440900-2440924|CP019593.2_2737820-2737796	NA:NA	2,1	2	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA,NA	NA|423aa|up_9|CP019593.2_1723321_1724590_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|CP019593.2_1724638_1725760_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|CP019593.2_1726107_1727469_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|CP019593.2_1727812_1729570_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|CP019593.2_1729591_1730560_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|CP019593.2_1730828_1731773_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|CP019593.2_1731772_1732630_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|CP019593.2_1732824_1734054_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|CP019593.2_1734502_1737700_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|CP019593.2_1737720_1738662_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|CP019593.2_1739031_1740330_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|CP019593.2_1740534_1740948_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|CP019593.2_1741453_1742143_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|CP019593.2_1742317_1743373_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_4|CP019593.2_1743688_1744807_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_5|CP019593.2_1744947_1745448_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_6|CP019593.2_1745694_1746897_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_7|CP019593.2_1746984_1747932_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_8|CP019593.2_1748054_1748549_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_9|CP019593.2_1748646_1749417_-	PRK10621, PRK10621, hypothetical protein; Provisional
GCA_002089075.2_ASM208907v2	CP019593	Staphylococcus aureus strain GD705 chromosome, complete genome	6	1741274-1741356	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	GAAGCTGACGAAAAAGTCAGCTTAC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|35aa|up_2|CP019593.2_1738892_1738997_+,NA	NA|586aa|up_9|CP019593.2_1727812_1729570_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_8|CP019593.2_1729591_1730560_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_7|CP019593.2_1730828_1731773_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_6|CP019593.2_1731772_1732630_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_5|CP019593.2_1732824_1734054_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_4|CP019593.2_1734502_1737700_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_3|CP019593.2_1737720_1738662_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|35aa|up_2|CP019593.2_1738892_1738997_+	NA	NA|433aa|up_1|CP019593.2_1739031_1740330_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|up_0|CP019593.2_1740534_1740948_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_0|CP019593.2_1741453_1742143_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_1|CP019593.2_1742317_1743373_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_2|CP019593.2_1743688_1744807_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_3|CP019593.2_1744947_1745448_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_4|CP019593.2_1745694_1746897_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_5|CP019593.2_1746984_1747932_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_6|CP019593.2_1748054_1748549_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_7|CP019593.2_1748646_1749417_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|408aa|down_8|CP019593.2_1749460_1750684_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|383aa|down_9|CP019593.2_1750683_1751832_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCA_002089075.2_ASM208907v2	CP019593	Staphylococcus aureus strain GD705 chromosome, complete genome	7	1829628-1829712	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Type I-A	GCAATGCGCGTTGGGGTGTGGGGCC	25	1	1	1829653-1829687	CP019593.2_1927372-1927338	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|75aa|up_5|CP019593.2_1825721_1825946_-,NA|148aa|up_2|CP019593.2_1827157_1827601_-,NA|101aa|down_1|CP019593.2_1830855_1831158_+	NA|501aa|up_9|CP019593.2_1820753_1822256_-	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|105aa|up_8|CP019593.2_1822898_1823213_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|431aa|up_7|CP019593.2_1823212_1824505_+	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|285aa|up_6|CP019593.2_1824591_1825446_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|75aa|up_5|CP019593.2_1825721_1825946_-	NA	NA|157aa|up_4|CP019593.2_1826144_1826615_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|148aa|up_3|CP019593.2_1826727_1827171_+	pfam06338, ComK, ComK protein	NA|148aa|up_2|CP019593.2_1827157_1827601_-	NA	NA|212aa|up_1|CP019593.2_1827898_1828534_+	pfam02517, Abi, CAAX protease self-immunity	NA|207aa|up_0|CP019593.2_1828700_1829321_+	pfam02517, Abi, CAAX protease self-immunity	NA|238aa|down_0|CP019593.2_1829883_1830597_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|101aa|down_1|CP019593.2_1830855_1831158_+	NA	NA|122aa|down_2|CP019593.2_1831412_1831778_+	PRK14201, PRK14201, fluoride efflux transporter CrcB	NA|118aa|down_3|CP019593.2_1831774_1832128_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|278aa|down_4|CP019593.2_1832377_1833211_-	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|303aa|down_5|CP019593.2_1833422_1834331_-	pfam08378, NERD, Nuclease-related domain	NA|398aa|down_6|CP019593.2_1834455_1835649_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|531aa|down_7|CP019593.2_1836020_1837613_+	cd00484, PEPCK_ATP, Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis	NA|249aa|down_8|CP019593.2_1837909_1838656_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|158aa|down_9|CP019593.2_1838660_1839134_-	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD
GCA_002089075.2_ASM208907v2	CP019593	Staphylococcus aureus strain GD705 chromosome, complete genome	8	1893076-1893203	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|132aa|up_8|CP019593.2_1885296_1885692_-,NA|68aa|up_7|CP019593.2_1885966_1886170_+,NA|51aa|up_6|CP019593.2_1886234_1886387_-,NA|77aa|down_9|CP019593.2_1911314_1911545_+	NA|462aa|up_9|CP019593.2_1883715_1885101_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_8|CP019593.2_1885296_1885692_-	NA	NA|68aa|up_7|CP019593.2_1885966_1886170_+	NA	NA|51aa|up_6|CP019593.2_1886234_1886387_-	NA	NA|200aa|up_5|CP019593.2_1886411_1887011_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|CP019593.2_1887169_1887640_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|CP019593.2_1887644_1888787_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|CP019593.2_1888922_1889651_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|CP019593.2_1889637_1891095_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|CP019593.2_1891351_1892413_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|CP019593.2_1901270_1901717_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|CP019593.2_1901813_1902764_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|CP019593.2_1902769_1903225_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|CP019593.2_1903305_1904595_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|CP019593.2_1904887_1905982_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|CP019593.2_1906172_1907909_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|CP019593.2_1908199_1908742_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|CP019593.2_1909044_1910082_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|CP019593.2_1910233_1911211_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|77aa|down_9|CP019593.2_1911314_1911545_+	NA
GCA_002089075.2_ASM208907v2	CP019593	Staphylococcus aureus strain GD705 chromosome, complete genome	9	2104152-2104364	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	47	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|46aa|up_4|CP019593.2_2101013_2101151_-,NA|107aa|down_0|CP019593.2_2104397_2104718_+	NA|232aa|up_9|CP019593.2_2093705_2094401_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|507aa|up_8|CP019593.2_2094753_2096274_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|452aa|up_7|CP019593.2_2096789_2098145_-	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|357aa|up_6|CP019593.2_2098159_2099230_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|401aa|up_5|CP019593.2_2099547_2100750_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|46aa|up_4|CP019593.2_2101013_2101151_-	NA	NA|70aa|up_3|CP019593.2_2101278_2101488_-	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|98aa|up_2|CP019593.2_2101499_2101793_-	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|495aa|up_1|CP019593.2_2101958_2103443_+	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|216aa|up_0|CP019593.2_2103470_2104118_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|107aa|down_0|CP019593.2_2104397_2104718_+	NA	NA|291aa|down_1|CP019593.2_2106359_2107232_-	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|214aa|down_2|CP019593.2_2107317_2107959_-	PRK00043, thiE, thiamine phosphate synthase	NA|264aa|down_3|CP019593.2_2107960_2108752_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|277aa|down_4|CP019593.2_2108735_2109566_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|230aa|down_5|CP019593.2_2109558_2110248_-	TIGR04306, salvage_TenA, thiaminase II	NA|232aa|down_6|CP019593.2_2110634_2111330_-	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|132aa|down_7|CP019593.2_2111718_2112114_-	pfam00436, SSB, Single-strand binding protein family	NA|168aa|down_8|CP019593.2_2112244_2112748_+	pfam14183, YwpF, YwpF-like protein	NA|147aa|down_9|CP019593.2_2112804_2113245_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ
GCA_002089075.2_ASM208907v2	CP019593	Staphylococcus aureus strain GD705 chromosome, complete genome	10	2159783-2159933	10	CRISPRCasFinder	no	csa3,TnsE_C	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|77aa|up_5|CP019593.2_2154655_2154886_-,NA|364aa|up_0|CP019593.2_2158673_2159765_+,NA|35aa|down_0|CP019593.2_2160262_2160367_-,NA|61aa|down_1|CP019593.2_2160799_2160982_-,NA|53aa|down_2|CP019593.2_2161046_2161205_+,NA|31aa|down_3|CP019593.2_2161640_2161733_+	NA|237aa|up_9|CP019593.2_2150265_2150976_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP019593.2_2151096_2151540_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP019593.2_2151739_2152153_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP019593.2_2152610_2153984_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP019593.2_2154655_2154886_-	NA	NA|313aa|up_4|CP019593.2_2154916_2155855_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP019593.2_2156288_2156954_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP019593.2_2157105_2157426_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|CP019593.2_2157427_2158408_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP019593.2_2158673_2159765_+	NA	NA|35aa|down_0|CP019593.2_2160262_2160367_-	NA	NA|61aa|down_1|CP019593.2_2160799_2160982_-	NA	NA|53aa|down_2|CP019593.2_2161046_2161205_+	NA	NA|31aa|down_3|CP019593.2_2161640_2161733_+	NA	NA|286aa|down_4|CP019593.2_2161862_2162720_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|CP019593.2_2162787_2163570_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|203aa|down_6|CP019593.2_2163859_2164468_-	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|345aa|down_7|CP019593.2_2164495_2165530_-	pfam13676, TIR_2, TIR domain	NA|490aa|down_8|CP019593.2_2165623_2167093_-	pfam18185, STALD, Sir2- and TIR-associating SLOG family	NA|97aa|down_9|CP019593.2_2167152_2167443_-	pfam11867, DUF3387, Domain of unknown function (DUF3387)
GCA_002089075.2_ASM208907v2	CP019593	Staphylococcus aureus strain GD705 chromosome, complete genome	11	2337168-2337253	11	CRISPRCasFinder	no	WYL	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	7	2337198-2337223|2337198-2337223|2337198-2337223|2337198-2337223|2337198-2337223|2337198-2337223|2337198-2337223	CP019593.2_1618843-1618818|CP019593.2_821951-821926|CP019593.2_826071-826096|CP019593.2_871006-871031|CP019593.2_1289804-1289829|CP019593.2_2115264-2115289|CP019593.2_2469119-2469094	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|65aa|up_8|CP019593.2_2329912_2330107_-,NA|93aa|up_3|CP019593.2_2334275_2334554_+,NA|80aa|up_0|CP019593.2_2336869_2337109_-,NA|78aa|down_1|CP019593.2_2338203_2338437_-,NA|110aa|down_8|CP019593.2_2346525_2346855_+	NA|270aa|up_9|CP019593.2_2329034_2329844_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|65aa|up_8|CP019593.2_2329912_2330107_-	NA	NA|467aa|up_7|CP019593.2_2330280_2331681_-	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|361aa|up_6|CP019593.2_2331775_2332858_-	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|141aa|up_5|CP019593.2_2333105_2333528_+	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|up_4|CP019593.2_2333764_2334265_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|93aa|up_3|CP019593.2_2334275_2334554_+	NA	NA|318aa|up_2|CP019593.2_2334627_2335581_+	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|375aa|up_1|CP019593.2_2335672_2336797_-	PRK06753, PRK06753, hypothetical protein; Provisional	NA|80aa|up_0|CP019593.2_2336869_2337109_-	NA	NA|213aa|down_0|CP019593.2_2337405_2338044_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|78aa|down_1|CP019593.2_2338203_2338437_-	NA	NA|158aa|down_2|CP019593.2_2338731_2339205_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|985aa|down_3|CP019593.2_2339204_2342159_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|308aa|down_4|CP019593.2_2342760_2343684_-	PRK09379, PRK09379, LytR family transcriptional regulator	NA|266aa|down_5|CP019593.2_2343840_2344638_-	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	WYL|231aa|down_6|CP019593.2_2345022_2345715_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|246aa|down_7|CP019593.2_2345739_2346477_-	pfam02517, Abi, CAAX protease self-immunity	NA|110aa|down_8|CP019593.2_2346525_2346855_+	NA	NA|291aa|down_9|CP019593.2_2347299_2348172_+	COG1737, RpiR, Transcriptional regulators [Transcription]
