The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP034958	Escherichia coli strain SCEC020026 chromosome, complete genome	4763166	1082830	1096013	4763166		Escherichia_phage(50.0%)	12	NA	NA
QAS84421.1|1082830_1083592_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	2.0e-59
QAS84422.1|1083585_1084212_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
QAS84423.1|1084351_1085491_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
QAS84424.1|1085553_1086546_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
QAS84425.1|1086639_1088004_-	GntP family transporter	NA	NA	NA	NA	NA
QAS84426.1|1088092_1088869_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
QAS84427.1|1088873_1089512_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
QAS84428.1|1089508_1090771_-	3-oxo-tetronate kinase	NA	A0A077SLJ7	Escherichia_phage	61.4	1.3e-135
QAS84429.1|1090767_1091676_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.9	3.0e-118
QAS84430.1|1091871_1092639_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	3.3e-70
QAS84431.1|1092689_1093346_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	46.3	8.0e-49
QAS84432.1|1093451_1096013_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	1.7e-30
>prophage 2
CP034958	Escherichia coli strain SCEC020026 chromosome, complete genome	4763166	1708661	1718103	4763166		Enterobacteria_phage(85.71%)	10	NA	NA
QAS84951.1|1708661_1709588_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	26.8	5.7e-08
QAS84952.1|1709592_1710324_+	ABC transporter permease	NA	NA	NA	NA	NA
QAS84953.1|1710304_1710412_-	protein YohO	NA	NA	NA	NA	NA
QAS84954.1|1710471_1711203_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
QAS84955.1|1711424_1713110_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
QAS84956.1|1713106_1713826_+	two-component system response regulator YehT	NA	NA	NA	NA	NA
QAS84957.1|1713872_1714343_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
QAS87651.1|1714383_1714845_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
QAS84958.1|1714969_1716970_-	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	96.3	0.0e+00
QAS84959.1|1716966_1718103_-	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.4	3.2e-162
>prophage 3
CP034958	Escherichia coli strain SCEC020026 chromosome, complete genome	4763166	2270978	2293545	4763166	tail,integrase	Escherichia_phage(26.67%)	27	2268190:2268203	2294805:2294818
2268190:2268203	attL	AAACATCTTCATCA	NA	NA	NA	NA
QAS85453.1|2270978_2273405_-	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.0	7.7e-214
QAS87681.1|2273603_2273909_-	DUF1161 domain-containing protein	NA	NA	NA	NA	NA
QAS85454.1|2274016_2274727_+	YnfC family lipoprotein	NA	NA	NA	NA	NA
QAS85455.1|2274729_2275290_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
QAS85456.1|2275324_2275666_-	DUF1283 family protein	NA	NA	NA	NA	NA
QAS85457.1|2275800_2276127_+	YnfA family protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
QAS85458.1|2276332_2277547_+	D-galactonate dehydratase family protein	NA	Q6A202	Oenococcus_phage	29.0	1.4e-46
QAS85459.1|2277558_2278578_+	Zn-dependent oxidoreductase	NA	E3SJ82	Synechococcus_phage	26.2	4.3e-17
QAS85460.1|2278635_2278746_+	transporter	NA	NA	NA	NA	NA
QAS85461.1|2278765_2280046_-	DUF3596 domain-containing protein	NA	B6DZ48	Enterobacteria_phage	62.3	6.6e-156
QAS87682.1|2280080_2280317_-	DNA-binding protein	NA	S4TND0	Salmonella_phage	50.7	6.1e-15
QAS85462.1|2280404_2282876_-	exonuclease	NA	K7PLW7	Enterobacteria_phage	59.8	6.1e-57
QAS85463.1|2282969_2283161_-	DUF1482 family protein	NA	NA	NA	NA	NA
QAS85464.1|2283157_2283346_-	division inhibition protein DicB	NA	NA	NA	NA	NA
QAS85465.1|2283429_2283672_+	hypothetical protein	NA	NA	NA	NA	NA
QAS85466.1|2283652_2284618_+	hypothetical protein	NA	U5P0A0	Shigella_phage	63.9	9.7e-59
QAS85467.1|2284658_2285081_+	DUF977 family protein	NA	A0A0U2QQN3	Escherichia_phage	85.6	2.0e-61
QAS85468.1|2285210_2286155_-	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
QAS85469.1|2286702_2288052_-	hypothetical protein	NA	A0A1W6JNS5	Morganella_phage	98.0	5.7e-259
QAS85470.1|2288369_2288972_+|integrase	integrase	integrase	A0A1V0E036	Clostridioides_phage	31.2	3.7e-08
QAS85471.1|2289331_2290312_+	hypothetical protein	NA	NA	NA	NA	NA
QAS87683.1|2290516_2290825_+	hypothetical protein	NA	NA	NA	NA	NA
QAS85472.1|2290831_2290939_-	hypothetical protein	NA	Q7Y2Q9	Escherichia_phage	100.0	3.8e-09
QAS85473.1|2290983_2291196_+	type I toxin-antitoxin system Hok family toxin	NA	A0A0U2QV81	Escherichia_phage	95.4	2.0e-25
QAS85474.1|2291411_2291663_+	hypothetical protein	NA	NA	NA	NA	NA
QAS85475.1|2291729_2292008_+	hypothetical protein	NA	I6PCV7	Cronobacter_phage	48.4	7.4e-12
QAS87684.1|2293419_2293545_+|tail	phage tail protein	tail	K7PMH7	Enterobacteria_phage	82.5	1.5e-12
2294805:2294818	attR	TGATGAAGATGTTT	NA	NA	NA	NA
>prophage 4
CP034958	Escherichia coli strain SCEC020026 chromosome, complete genome	4763166	2696228	2707006	4763166	integrase	Enterobacteria_phage(40.0%)	11	2694201:2694224	2705709:2705732
2694201:2694224	attL	AACGGGCGTGTTATACGCCCGTTG	NA	NA	NA	NA
QAS85823.1|2696228_2698184_-	AAA family ATPase	NA	K4I1H4	Acidithiobacillus_phage	28.6	7.5e-26
QAS85824.1|2700548_2701088_-	regulator	NA	M9NZI6	Enterobacteria_phage	65.6	7.5e-61
QAS85825.1|2701270_2701582_+	recombinase	NA	A0A0N7KZJ3	Stx2-converting_phage	100.0	2.4e-43
QAS85826.1|2701578_2702259_+	exonuclease	NA	A0A0P0ZCD4	Stx2-converting_phage	98.7	5.1e-131
QAS87700.1|2702255_2702414_+	DUF1317 family protein	NA	M1FJ61	Enterobacteria_phage	88.5	6.4e-21
QAS85827.1|2702410_2703475_+	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	64.8	1.7e-133
QAS85828.1|2703628_2703847_+	TraR/DksA family transcriptional regulator	NA	M1FQT7	Enterobacteria_phage	94.4	3.2e-34
QAS85829.1|2703894_2704134_+	DUF4222 domain-containing protein	NA	M1FPC8	Enterobacteria_phage	94.9	3.9e-38
QAS85830.1|2704273_2704510_+	excisionase	NA	NA	NA	NA	NA
QAS85831.1|2704499_2705642_+|integrase	integrase	integrase	O21929	Phage_21	99.7	8.1e-206
QAS85832.1|2705755_2707006_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	100.0	3.8e-23
2705709:2705732	attR	CAACGGGCGTATAACACGCCCGTT	NA	NA	NA	NA
>prophage 5
CP034958	Escherichia coli strain SCEC020026 chromosome, complete genome	4763166	2835813	2880466	4763166	transposase	Stx2-converting_phage(33.33%)	38	NA	NA
QAS85956.1|2835813_2836272_-|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	5.5e-12
QAS85957.1|2837000_2838146_-	class C beta-lactamase CMY-2	NA	NA	NA	NA	NA
QAS85958.1|2838469_2839732_-|transposase	IS1380-like element ISEc9 family transposase	transposase	A0A1B0VDR3	Salmonella_phage	100.0	1.3e-39
QAS85959.1|2839997_2841326_-|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
QAS85960.1|2841557_2841737_-	hypothetical protein	NA	NA	NA	NA	NA
QAS85961.1|2841699_2841876_-	DUF3927 domain-containing protein	NA	NA	NA	NA	NA
QAS85962.1|2842119_2842902_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.2	1.7e-138
QAS85963.1|2843934_2844078_-	chemotaxis protein	NA	NA	NA	NA	NA
QAS85964.1|2844631_2846170_-|transposase	IS66-like element ISEc8 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	99.2	2.1e-297
QAS85965.1|2846219_2846567_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	100.0	2.2e-61
QAS85966.1|2846563_2846944_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBP6	Stx2-converting_phage	99.2	1.2e-65
QAS85967.1|2847398_2848412_-	DUF4432 domain-containing protein	NA	NA	NA	NA	NA
QAS85968.1|2848423_2849740_-	L-fucose:H+ symporter permease	NA	NA	NA	NA	NA
QAS85969.1|2849767_2850688_-	ribokinase	NA	NA	NA	NA	NA
QAS85970.1|2850993_2851776_+	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
QAS85971.1|2851777_2851876_-	acetolactate synthase	NA	NA	NA	NA	NA
QAS87708.1|2852003_2852204_-	hypothetical protein	NA	NA	NA	NA	NA
QAS85972.1|2852488_2853717_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	96.0	2.7e-170
QAS85973.1|2853893_2854133_+	hypothetical protein	NA	NA	NA	NA	NA
QAS87709.1|2854319_2854955_+	galactonate dehydratase	NA	NA	NA	NA	NA
QAS85974.1|2855036_2855474_+	hypothetical protein	NA	NA	NA	NA	NA
QAS85975.1|2855536_2856361_-	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
QAS85976.1|2856609_2856948_+	aldolase	NA	NA	NA	NA	NA
QAS85977.1|2857061_2858633_+	PTS maltose transporter subunit IICB	NA	NA	NA	NA	NA
QAS85978.1|2858644_2859820_+	putative C-S lyase	NA	NA	NA	NA	NA
QAS87710.1|2859833_2861723_+	enterotoxin	NA	NA	NA	NA	NA
QAS87711.1|2861891_2862098_-	methyltransferase	NA	NA	NA	NA	NA
QAS85979.1|2862202_2863639_-	hypothetical protein	NA	NA	NA	NA	NA
QAS87712.1|2863635_2868594_-	nuclease	NA	NA	NA	NA	NA
QAS85980.1|2869268_2869832_-	inovirus Gp2 family protein	NA	NA	NA	NA	NA
QAS85981.1|2870652_2872086_-	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
QAS85982.1|2872304_2872502_-	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
QAS85983.1|2872746_2873043_-	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
QAS85984.1|2874154_2875972_+	hypothetical protein	NA	NA	NA	NA	NA
QAS85985.1|2876158_2877361_-	DUF4102 domain-containing protein	NA	A0A1B0VMI6	Pseudomonas_phage	34.4	2.9e-44
QAS85986.1|2877727_2878714_-	hypothetical protein	NA	NA	NA	NA	NA
QAS85987.1|2878710_2879202_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
QAS85988.1|2879304_2880466_+|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	3.1e-51
>prophage 6
CP034958	Escherichia coli strain SCEC020026 chromosome, complete genome	4763166	3094145	3102915	4763166	integrase	Salmonella_phage(90.0%)	12	3093815:3093828	3102957:3102970
3093815:3093828	attL	AAAACAATAAGTTA	NA	NA	NA	NA
QAS86165.1|3094145_3094334_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	95.2	2.0e-24
QAS86166.1|3094492_3096886_-	replication endonuclease	NA	E5G6L9	Salmonella_phage	93.7	0.0e+00
QAS86167.1|3096882_3097740_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	95.8	9.5e-159
QAS86168.1|3097736_3097964_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	98.7	7.8e-36
QAS86169.1|3097963_3098197_-	DUF2732 family protein	NA	E5G6L6	Salmonella_phage	97.4	1.9e-32
QAS86170.1|3098264_3098606_-	hypothetical protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
QAS86171.1|3098723_3099020_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	88.5	1.9e-21
QAS86172.1|3099027_3099537_-	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.2	1.3e-86
QAS86173.1|3099569_3099791_-	regulator	NA	NA	NA	NA	NA
QAS87721.1|3099936_3100815_+	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	39.4	1.7e-30
QAS86174.1|3100826_3101771_+	hypothetical protein	NA	NA	NA	NA	NA
QAS86175.1|3101862_3102915_+|integrase	site-specific integrase	integrase	A0A218M4I3	Erwinia_phage	57.0	1.4e-106
3102957:3102970	attR	TAACTTATTGTTTT	NA	NA	NA	NA
>prophage 7
CP034958	Escherichia coli strain SCEC020026 chromosome, complete genome	4763166	3186473	3209702	4763166	tail,integrase,capsid,lysis	Enterobacteria_phage(50.0%)	45	3184414:3184428	3209776:3209790
3184414:3184428	attL	TTAGTATAAAAAAGC	NA	NA	NA	NA
QAS87725.1|3186473_3186650_-|tail	phage tail protein	tail	K7PMH7	Enterobacteria_phage	84.5	9.4e-21
QAS86248.1|3186799_3187468_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
QAS86249.1|3187412_3187550_-|capsid	nucleocapsid protein	capsid	NA	NA	NA	NA
QAS86250.1|3188358_3188919_-	DNA-packaging protein NohD	NA	A0A0K2FIG2	Enterobacteria_phage	98.8	4.9e-87
QAS86251.1|3189307_3189541_+	DUF3950 domain-containing protein	NA	A0A0K2FIR8	Escherichia_phage	94.4	7.3e-21
QAS86252.1|3189597_3190008_+	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	76.3	1.3e-52
QAS86253.1|3190359_3190512_-	hypothetical protein	NA	K7PKL2	Enterobacteria_phage	96.0	3.1e-20
QAS86254.1|3190540_3190747_-	hypothetical protein	NA	H6WRZ6	Salmonella_phage	98.5	5.3e-31
QAS86255.1|3190963_3191461_-	lysozyme	NA	A0A1B5FP97	Escherichia_phage	97.0	1.6e-89
QAS86256.1|3191460_3191676_-|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	98.6	1.2e-33
QAS86257.1|3191863_3192451_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
QAS86258.1|3192459_3192594_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QAS86259.1|3192945_3193905_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA	NA
QAS86260.1|3194097_3194622_+	outer membrane lipoprotein Blc	NA	A0A1W6JNX6	Morganella_phage	54.1	1.1e-48
QAS86261.1|3194777_3195155_-	antitermination protein	NA	Q777W5	Enterobacteria_phage	84.2	7.3e-55
QAS86262.1|3195240_3195381_-	YlcG family protein	NA	K7PHH3	Enterobacteria_phage	67.4	5.5e-08
QAS86263.1|3195377_3195740_-	crossover junction endodeoxyribonuclease RusA	NA	K7PM48	Enterobacteria_phage	97.4	1.5e-60
QAS86264.1|3195736_3196027_-	DUF1364 domain-containing protein	NA	K7PGZ6	Enterobacteria_phage	91.7	4.8e-46
QAS86265.1|3196019_3196190_-	hypothetical protein	NA	K7P7K0	Enterobacteria_phage	69.8	2.4e-13
QAS86266.1|3196189_3196645_-	DNA base-flipping protein YbcN	NA	I6PD71	Cronobacter_phage	66.2	5.9e-59
QAS86267.1|3196641_3196743_-	hypothetical protein	NA	NA	NA	NA	NA
QAS86268.1|3196835_3197288_-	hypothetical protein	NA	NA	NA	NA	NA
QAS86269.1|3197284_3197845_-	UDP-N-acetylglucosamine acyltransferase	NA	NA	NA	NA	NA
QAS86270.1|3198101_3198293_+	hypothetical protein	NA	NA	NA	NA	NA
QAS86271.1|3198329_3198623_-	protein ren	NA	A0A0N6WES4	Escherichia_phage	95.7	1.1e-42
QAS86272.1|3198619_3199321_-	Replication protein P	NA	K7P6G2	Enterobacteria_phage	99.6	3.8e-129
QAS87726.1|3199317_3200247_-	Replication protein O	NA	A0A0M5M7Y1	Salmonella_phage	63.4	1.2e-109
QAS86273.1|3200333_3200873_-	regulator	NA	M9NZI6	Enterobacteria_phage	66.1	2.0e-61
QAS86274.1|3200942_3201173_-	helix-turn-helix domain-containing protein	NA	A0A2H4FNF3	Salmonella_phage	68.0	1.5e-21
QAS87727.1|3201277_3201967_+	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	75.0	2.8e-92
QAS86275.1|3202089_3202839_+	hypothetical protein	NA	NA	NA	NA	NA
QAS86276.1|3202835_3203663_+	DUF3037 domain-containing protein	NA	NA	NA	NA	NA
QAS86277.1|3204171_3204378_+	cell division inhibitor protein	NA	K7P6H3	Enterobacteria_phage	85.3	3.2e-28
QAS86278.1|3204453_3204750_+	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	100.0	1.6e-49
QAS86279.1|3204755_3205541_+	phage recombination protein Bet	NA	A0A1I9LJN0	Stx_converting_phage	100.0	6.3e-149
QAS86280.1|3205537_3206218_+	exonuclease	NA	A0A0P0ZCD4	Stx2-converting_phage	98.7	3.0e-131
QAS86281.1|3206214_3206397_+	DUF1317 family protein	NA	A0A0N7CHV0	Escherichia_phage	98.3	2.2e-28
QAS86282.1|3206369_3206561_+	DUF1382 family protein	NA	A0A0P0ZC67	Stx2-converting_phage	98.4	2.8e-26
QAS86283.1|3206571_3206853_+	cell division protein ZapA	NA	A0A0P0ZE02	Stx2-converting_phage	100.0	2.5e-47
QAS86284.1|3206951_3207173_+	TraR/DksA family transcriptional regulator	NA	A0A0N7C211	Escherichia_phage	97.3	1.4e-34
QAS86285.1|3207383_3207986_-	hypothetical protein	NA	NA	NA	NA	NA
QAS86286.1|3208110_3208296_-	hypothetical protein	NA	NA	NA	NA	NA
QAS86287.1|3208228_3208396_+	hypothetical protein	NA	A5VWB7	Enterobacteria_phage	98.2	2.9e-27
QAS86288.1|3208435_3208654_+	excisionase	NA	Q77WA4	Escherichia_phage	100.0	3.7e-35
QAS86289.1|3208631_3209702_+|integrase	integrase	integrase	Q9MCR4	Enterobacteria_phage	99.7	1.9e-201
3209776:3209790	attR	TTAGTATAAAAAAGC	NA	NA	NA	NA
>prophage 8
CP034958	Escherichia coli strain SCEC020026 chromosome, complete genome	4763166	3697192	3712880	4763166	tail,integrase	Shigella_phage(33.33%)	17	3694296:3694355	3708965:3709024
3694296:3694355	attL	CTTATTGATTTAAATGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
QAS86697.1|3697192_3697966_+	hypothetical protein	NA	G9IA57	Pseudomonas_phage	37.7	4.1e-36
QAS87748.1|3698035_3698164_-|tail	phage tail protein	tail	K7PMH7	Enterobacteria_phage	84.6	1.7e-11
QAS86698.1|3698218_3701362_-	GntR family transcriptional regulator	NA	K7PGT9	Enterobacteria_phage	57.4	9.3e-260
QAS86699.1|3701351_3701531_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	68.5	7.8e-15
QAS87749.1|3701706_3702264_-	protein YmfL	NA	S5FXP0	Shigella_phage	96.2	1.5e-96
QAS86700.1|3702301_3702502_-	cell division protein	NA	NA	NA	NA	NA
QAS86701.1|3702599_3703226_+	LexA family transcriptional regulator	NA	K7PM82	Enterobacteria_phage	48.8	2.5e-47
QAS87750.1|3703456_3703954_-	hypothetical protein	NA	NA	NA	NA	NA
QAS86702.1|3704447_3704810_+	hypothetical protein	NA	Q8SBF8	Shigella_phage	100.0	8.6e-61
QAS86703.1|3704875_3705700_+	DUF2303 family protein	NA	U5P439	Shigella_phage	99.6	6.0e-150
QAS86704.1|3705827_3706364_+	5'-deoxynucleotidase	NA	S5MW55	Escherichia_phage	98.3	2.0e-98
QAS86705.1|3706354_3707233_+	hypothetical protein	NA	A0A2R2Z314	Escherichia_phage	92.4	5.3e-165
QAS86706.1|3707229_3707574_+	DNA-binding protein	NA	U5P0J0	Shigella_phage	80.7	2.0e-30
QAS86707.1|3707800_3708964_+|integrase	integrase	integrase	U5P434	Shigella_phage	100.0	2.4e-229
QAS86708.1|3709168_3710422_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.0	1.7e-95
3708965:3709024	attR	CTTATTGATTTAAATGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
QAS86709.1|3710433_3711537_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
QAS86710.1|3711824_3712880_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	60.9	7.7e-118
>prophage 9
CP034958	Escherichia coli strain SCEC020026 chromosome, complete genome	4763166	4098759	4105318	4763166	transposase	uncultured_Caudovirales_phage(16.67%)	7	NA	NA
QAS87034.1|4098759_4099716_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
QAS87035.1|4099716_4100484_+	Fe(3+) dicitrate transport ATP-binding protein FecE	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
QAS87036.1|4101041_4101299_-	hypothetical protein	NA	NA	NA	NA	NA
QAS87037.1|4102350_4103502_+|transposase	IS30-like element IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.0	2.6e-42
QAS87038.1|4103421_4103772_-|transposase	transposase	transposase	Q716C1	Shigella_phage	97.7	8.9e-39
QAS87039.1|4103872_4104445_+	hypothetical protein	NA	Q858R9	Enterobacteria_phage	69.0	2.2e-71
QAS87040.1|4104493_4105318_-	hypothetical protein	NA	L7TR00	Rhizobium_phage	35.5	3.0e-16
>prophage 10
CP034958	Escherichia coli strain SCEC020026 chromosome, complete genome	4763166	4505967	4540540	4763166	tail,integrase,protease,lysis	Escherichia_virus(26.09%)	41	4521864:4521910	4537752:4537798
QAS87372.1|4505967_4506498_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
QAS87373.1|4506507_4507839_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.9	1.7e-45
QAS87374.1|4507905_4508832_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
QAS87375.1|4508924_4509410_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA	NA
QAS87376.1|4509494_4509740_-	septal ring assembly protein ZapB	NA	NA	NA	NA	NA
QAS87377.1|4510165_4511011_+	glycerol uptake facilitator protein GlpF	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	28.0	4.4e-15
QAS87378.1|4511033_4512542_+	glycerol kinase	NA	NA	NA	NA	NA
QAS87379.1|4512674_4513685_+	class II fructose-bisphosphatase	NA	NA	NA	NA	NA
QAS87380.1|4513781_4514528_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
QAS87381.1|4514532_4514961_-	universal stress protein UspD	NA	NA	NA	NA	NA
QAS87382.1|4514987_4515287_-	DUF406 domain-containing protein	NA	NA	NA	NA	NA
QAS87383.1|4515498_4515939_-	DUF805 domain-containing protein	NA	NA	NA	NA	NA
QAS87384.1|4516039_4516639_+	DUF1454 family protein	NA	NA	NA	NA	NA
QAS87385.1|4516746_4517514_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
QAS87386.1|4517568_4518324_-	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA	NA
QAS87387.1|4518430_4519420_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QAS87388.1|4519739_4520702_-	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA	NA
QAS87389.1|4520882_4521785_-	cation-efflux pump FieF	NA	NA	NA	NA	NA
4521864:4521910	attL	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
QAS87390.1|4522021_4522276_-	DNA-binding transcriptional regulator	NA	M1SNR2	Escherichia_phage	100.0	1.3e-44
QAS87391.1|4523487_4524387_-	hypothetical protein	NA	Q7Y4D2	Escherichia_virus	99.7	4.0e-168
QAS87392.1|4524602_4525130_-|tail	tail fiber assembly protein	tail	A0A0C4UR05	Shigella_phage	88.6	5.1e-86
QAS87393.1|4525131_4526133_-|tail	phage tail protein	tail	A0A0C4UQV0	Shigella_phage	91.7	1.2e-176
QAS87394.1|4526656_4527442_+	hypothetical protein	NA	NA	NA	NA	NA
QAS87395.1|4527513_4527966_-	phage virion morphogenesis protein	NA	A0A0F7LBV9	Escherichia_phage	98.7	5.3e-76
QAS87396.1|4527958_4528426_-|tail	phage tail protein	tail	Q7Y4E0	Escherichia_virus	98.7	1.9e-81
QAS87778.1|4528388_4528562_-|lysis	phage lysis protein	lysis	Q7Y4E1	Escherichia_virus	96.5	2.3e-24
QAS87397.1|4528533_4528959_-|lysis	LysB family phage lysis regulatory protein	lysis	Q858W0	Yersinia_virus	98.6	5.5e-67
QAS87398.1|4528946_4529372_-	protein lysA	NA	A0A0F7LBP4	Escherichia_phage	92.9	3.4e-56
QAS87399.1|4530284_4530470_-	hypothetical protein	NA	M1TAP7	Escherichia_phage	88.7	2.5e-16
QAS87400.1|4530661_4531735_+	hypothetical protein	NA	Q7Y4B3	Escherichia_virus	100.0	1.2e-203
QAS87401.1|4531727_4532765_+	hypothetical protein	NA	Q7Y4B4	Escherichia_virus	100.0	4.6e-200
QAS87402.1|4532761_4533700_-	DNA cytosine methyltransferase	NA	Q7Y4B5	Escherichia_virus	100.0	3.1e-187
QAS87403.1|4533942_4534149_-	hypothetical protein	NA	Q2P9X3	Enterobacteria_phage	97.0	2.4e-31
QAS87404.1|4534148_4534601_-	DUF3850 domain-containing protein	NA	Q2P9X4	Enterobacteria_phage	96.7	1.4e-79
QAS87405.1|4535197_4535698_-	replication protein B	NA	M1SV55	Escherichia_phage	99.4	1.3e-91
QAS87406.1|4535867_4536140_-	hypothetical protein	NA	Q1JS44	Enterobacteria_phage	100.0	1.5e-46
QAS87407.1|4536292_4536586_+	helix-turn-helix domain-containing protein	NA	Q1JS45	Enterobacteria_phage	100.0	1.0e-48
QAS87408.1|4536655_4537636_+|integrase	integrase	integrase	U5N0A8	Enterobacteria_phage	99.7	2.3e-185
QAS87779.1|4537821_4538322_-	cell-envelope stress modulator CpxP	NA	NA	NA	NA	NA
4537752:4537798	attR	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
QAS87409.1|4538471_4539170_+	envelope stress response regulator transcription factor CpxR	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
QAS87410.1|4539166_4540540_+	envelope stress sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.9	3.8e-16
>prophage 1
CP034956	Escherichia coli strain SCEC020026 plasmid pCTXM15_020026, complete sequence	98397	8609	57113	98397	protease,integrase,transposase	Escherichia_phage(50.0%)	48	NA	NA
QAS83305.1|8609_9314_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAS83306.1|9888_10092_-	hypothetical protein	NA	NA	NA	NA	NA
QAS83307.1|10110_10290_+	hypothetical protein	NA	NA	NA	NA	NA
QAS83308.1|10219_11059_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
QAS83309.1|11052_11400_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
QAS83310.1|11605_12394_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA	NA
QAS83387.1|12524_12998_-	trimethoprim-resistant dihydrofolate reductase DfrA17	NA	A0A1B2IAU3	Erwinia_phage	34.6	1.3e-16
QAS83311.1|13155_14169_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
QAS83312.1|14433_14625_+	hypothetical protein	NA	NA	NA	NA	NA
QAS83313.1|14570_15275_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAS83314.1|15414_16179_+|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
QAS83315.1|16369_16726_-	hypothetical protein	NA	NA	NA	NA	NA
QAS83316.1|16671_17256_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QAS83317.1|17255_18494_-	MFS transporter	NA	NA	NA	NA	NA
QAS83318.1|18490_19396_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
QAS83319.1|19517_20222_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAS83320.1|20258_21386_-	DUF3883 domain-containing protein	NA	NA	NA	NA	NA
QAS83321.1|21436_21682_-	hypothetical protein	NA	NA	NA	NA	NA
QAS83322.1|21687_21879_+	hypothetical protein	NA	NA	NA	NA	NA
QAS83323.1|22360_22903_-	tunicamycin resistance protein	NA	NA	NA	NA	NA
QAS83324.1|22915_23776_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA	NA
QAS83325.1|24990_25857_+|transposase	IS4 family transposase	transposase	A4KWT9	Enterobacteria_phage	100.0	1.3e-163
QAS83326.1|25890_26595_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAS83327.1|27032_27893_+	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
QAS83328.1|28042_28468_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
QAS83329.1|28479_29184_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAS83330.1|29244_30081_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
QAS83331.1|30080_30884_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA	NA
QAS83332.1|30944_31760_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	3.5e-09
QAS83333.1|32067_32919_-	replication protein	NA	NA	NA	NA	NA
QAS83334.1|33674_34379_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAS83335.1|35338_35980_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
QAS83336.1|36552_37113_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	86.2	4.0e-49
QAS83337.1|39733_40594_-	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
QAS83338.1|41102_41807_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAS83339.1|42188_43064_+	class A extended-spectrum beta-lactamase CTX-M-15	NA	A0A1B0VBP7	Salmonella_phage	82.4	1.1e-125
QAS83340.1|43110_43443_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA	NA
QAS83341.1|45764_46469_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAS83388.1|47100_47931_-	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA	NA
QAS83389.1|48061_48616_-	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA	NA
QAS83342.1|48759_49464_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAS83343.1|52008_52341_-	mRNA interferase PemK	NA	NA	NA	NA	NA
QAS83344.1|52342_52600_-	antitoxin PemI	NA	NA	NA	NA	NA
QAS83345.1|52692_53346_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QAS83346.1|54285_55143_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA	NA
QAS83390.1|55135_55210_-	RepA leader peptide Tap	NA	NA	NA	NA	NA
QAS83347.1|55293_55431_+	replication protein RepA	NA	NA	NA	NA	NA
QAS83348.1|55571_57113_+|transposase	IS21-like element ISEc12 family transposase	transposase	K4I413	Acidithiobacillus_phage	46.4	1.7e-129
>prophage 2
CP034956	Escherichia coli strain SCEC020026 plasmid pCTXM15_020026, complete sequence	98397	89835	97265	98397		Escherichia_phage(57.14%)	7	NA	NA
QAS83379.1|89835_92952_-	HsdR family type I site-specific deoxyribonuclease	NA	A0A220A398	Liberibacter_phage	24.0	2.9e-27
QAS83380.1|93073_94357_-	restriction endonuclease subunit S	NA	F2Y1N5	Organic_Lake_phycodnavirus	26.5	2.2e-10
QAS83381.1|94353_95910_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	42.5	7.1e-104
QAS83382.1|96092_96314_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	A0A222YXU1	Escherichia_phage	100.0	6.7e-32
QAS83383.1|96313_96694_+	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A077SK56	Escherichia_phage	100.0	1.1e-63
QAS83384.1|96698_96878_+	PdcA protein	NA	Q71TH5	Escherichia_phage	96.6	3.5e-23
QAS83385.1|96905_97265_+	pdcB	NA	A0A077SLM1	Escherichia_phage	98.9	5.0e-45
>prophage 1
CP034957	Escherichia coli strain SCEC020026 plasmid pNDM5_020026, complete sequence	46161	0	11827	46161	transposase	Bacillus_phage(33.33%)	12	NA	NA
QAS83395.1|1310_1766_+	DNA-binding protein	NA	NA	NA	NA	NA
QAS83396.1|1803_2454_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
QAS83397.1|2443_2710_+	hypothetical protein	NA	NA	NA	NA	NA
QAS83398.1|2726_2906_+	hypothetical protein	NA	NA	NA	NA	NA
QAS83399.1|2902_3724_+	sprT domain-containing protein	NA	NA	NA	NA	NA
QAS83400.1|3833_4088_+	hypothetical protein	NA	NA	NA	NA	NA
QAS83401.1|4105_4381_+	hypothetical protein	NA	NA	NA	NA	NA
QAS83448.1|4443_4656_+	hypothetical protein	NA	NA	NA	NA	NA
QAS83402.1|4613_4799_+	hypothetical protein	NA	NA	NA	NA	NA
QAS83403.1|6463_9481_+|transposase	Tn3-like element IS3000 family transposase	transposase	A0A125RQ78	Bacillus_phage	24.7	5.5e-52
QAS83404.1|9700_10702_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	38.1	2.6e-51
QAS83405.1|10810_11827_-|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	99.7	9.8e-187
>prophage 2
CP034957	Escherichia coli strain SCEC020026 plasmid pNDM5_020026, complete sequence	46161	15089	19542	46161	transposase	Escherichia_phage(40.0%)	6	NA	NA
QAS83410.1|15089_15794_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAS83411.1|15827_16184_-	sOS mutagenesis and repair protein UmuD	NA	A0A222YZE2	Escherichia_phage	46.6	5.5e-20
QAS83412.1|16186_16426_-	DNA polymerase V	NA	I6PD82	Cronobacter_phage	55.1	4.4e-21
QAS83413.1|16527_17748_+|transposase	ISL3-like element ISKox3 family transposase	transposase	NA	NA	NA	NA
QAS83414.1|17836_18499_-	resolvase	NA	M9Q1K0	Clostridium_phage	29.1	9.7e-10
QAS83415.1|18879_19542_+	peptidyl-arginine deiminase	NA	E5FFJ3	Burkholderia_phage	25.2	2.6e-07
>prophage 3
CP034957	Escherichia coli strain SCEC020026 plasmid pNDM5_020026, complete sequence	46161	24142	24658	46161		Tupanvirus(100.0%)	1	NA	NA
QAS83421.1|24142_24658_+	molecular chaperone DnaJ	NA	A0A2K9L588	Tupanvirus	39.8	3.3e-05
>prophage 4
CP034957	Escherichia coli strain SCEC020026 plasmid pNDM5_020026, complete sequence	46161	43289	45129	46161		Moraxella_phage(50.0%)	2	NA	NA
QAS83446.1|43289_43784_+	micrococcal nuclease	NA	A0A0R6PHV6	Moraxella_phage	37.3	8.0e-17
QAS83447.1|43866_45129_+	ATP-binding protein	NA	A0A1V0SKF8	Klosneuvirus	31.4	1.3e-07
