assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002208945.2_ASM220894v2	CP022059	Enterococcus faecalis strain FDAARGOS_338 chromosome, complete genome	1	4162-4791	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csn2,cas2,cas1,cas9,cas3,csa3,WYL,DEDDh,cas14j,DinG	Type II-B,Type II-A,Type II-C	GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	9,9,8	9	TypeII-B,TypeII-A,TypeII-C	csn2,cas2,cas1,cas9,cas3,csa3,WYL,DEDDh,cas14j,DinG	NA,NA|78aa|down_4|CP022059.2_11222_11456_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|506aa|up_2|CP022059.2_59_1577_-	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|318aa|up_1|CP022059.2_1577_2531_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|338aa|up_0|CP022059.2_2766_3780_+	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]	csn2|220aa|down_0|CP022059.2_4883_5543_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|110aa|down_1|CP022059.2_5543_5873_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|CP022059.2_5869_6736_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1338aa|down_3|CP022059.2_6736_10750_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|78aa|down_4|CP022059.2_11222_11456_-	NA	NA|472aa|down_5|CP022059.2_11600_13016_-	TIGR01886, Beta-Ala-Xaa_dipeptidase, dipeptidase PepV	NA|258aa|down_6|CP022059.2_13149_13923_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|550aa|down_7|CP022059.2_13992_15642_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|509aa|down_8|CP022059.2_15845_17372_+	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|191aa|down_9|CP022059.2_17438_18011_-	COG0400, COG0400, Predicted esterase [General function prediction only]
GCA_002208945.2_ASM220894v2	CP022059	Enterococcus faecalis strain FDAARGOS_338 chromosome, complete genome	2	2231014-2231314	2,2,2	CRT,CRISPRCasFinder,PILER-CR	no		csn2,cas2,cas1,cas9,cas3,csa3,WYL,DEDDh,cas14j,DinG	Orphan	GGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	37,36,37	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	4,4,3	4	Orphan	csn2,cas2,cas1,cas9,cas3,csa3,WYL,DEDDh,cas14j,DinG	NA|44aa|up_8|CP022059.2_2221143_2221275_-,NA|33aa|up_0|CP022059.2_2230767_2230866_-,NA|50aa|down_6|CP022059.2_2237540_2237690_-	NA|808aa|up_9|CP022059.2_2218614_2221038_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|44aa|up_8|CP022059.2_2221143_2221275_-	NA	NA|404aa|up_7|CP022059.2_2221351_2222563_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|302aa|up_6|CP022059.2_2222591_2223497_-	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|327aa|up_5|CP022059.2_2223618_2224599_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|589aa|up_4|CP022059.2_2224678_2226445_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|578aa|up_3|CP022059.2_2226441_2228175_-	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit	NA|338aa|up_2|CP022059.2_2228179_2229193_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|473aa|up_1|CP022059.2_2229189_2230608_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|33aa|up_0|CP022059.2_2230767_2230866_-	NA	NA|288aa|down_0|CP022059.2_2231471_2232335_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|694aa|down_1|CP022059.2_2232419_2234501_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|122aa|down_2|CP022059.2_2234631_2234997_-	pfam06279, DUF1033, Protein of unknown function (DUF1033)	NA|190aa|down_3|CP022059.2_2235094_2235664_-	pfam13305, WHG, WHG domain	NA|172aa|down_4|CP022059.2_2235796_2236312_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|413aa|down_5|CP022059.2_2236328_2237567_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|50aa|down_6|CP022059.2_2237540_2237690_-	NA	NA|375aa|down_7|CP022059.2_2237746_2238871_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|115aa|down_8|CP022059.2_2239096_2239441_-	pfam08866, DUF1831, Putative amino acid metabolism	NA|382aa|down_9|CP022059.2_2239508_2240654_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCA_002208945.2_ASM220894v2	CP022059	Enterococcus faecalis strain FDAARGOS_338 chromosome, complete genome	3	2250839-2250946	3	CRISPRCasFinder	no		csn2,cas2,cas1,cas9,cas3,csa3,WYL,DEDDh,cas14j,DinG	Orphan	TTCGTGCAAATGATACAACCTGCCCT	26	0	0	NA	NA	NA	1	1	Orphan	csn2,cas2,cas1,cas9,cas3,csa3,WYL,DEDDh,cas14j,DinG	NA|36aa|up_4|CP022059.2_2246266_2246374_-,NA|69aa|down_0|CP022059.2_2251328_2251535_+,NA|64aa|down_2|CP022059.2_2253467_2253659_+,NA|322aa|down_3|CP022059.2_2253746_2254712_-,NA|97aa|down_4|CP022059.2_2254885_2255176_-	NA|325aa|up_9|CP022059.2_2240810_2241785_-	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional	NA|250aa|up_8|CP022059.2_2241997_2242747_+	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|290aa|up_7|CP022059.2_2242743_2243613_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|309aa|up_6|CP022059.2_2243599_2244526_+	cd01137, PsaA, Metal binding protein PsaA	NA|513aa|up_5|CP022059.2_2244580_2246119_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|36aa|up_4|CP022059.2_2246266_2246374_-	NA	NA|398aa|up_3|CP022059.2_2246488_2247682_-	cd08019, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|278aa|up_2|CP022059.2_2247696_2248530_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|227aa|up_1|CP022059.2_2248549_2249230_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|CP022059.2_2249248_2250319_-	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|69aa|down_0|CP022059.2_2251328_2251535_+	NA	NA|497aa|down_1|CP022059.2_2251775_2253266_+	pfam14264, Glucos_trans_II, Glucosyl transferase GtrII	NA|64aa|down_2|CP022059.2_2253467_2253659_+	NA	NA|322aa|down_3|CP022059.2_2253746_2254712_-	NA	NA|97aa|down_4|CP022059.2_2254885_2255176_-	NA	NA|427aa|down_5|CP022059.2_2255223_2256504_-	pfam02388, FemAB, FemAB family	NA|603aa|down_6|CP022059.2_2256772_2258581_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|278aa|down_7|CP022059.2_2259023_2259857_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|569aa|down_8|CP022059.2_2259853_2261560_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|184aa|down_9|CP022059.2_2261660_2262212_-	PRK13661, PRK13661, ECF-type riboflavin transporter substrate-binding protein
