The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP016766	Lactobacillus agilis strain La3, complete genome	2187209	211850	221178	2187209	tRNA	Enterococcus_phage(33.33%)	12	NA	NA
ASR40194.1|211850_214022_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	62.7	1.4e-262
ASR40195.1|214002_214389_-	ribonucleotide reductase stimulatory protein	NA	A0A142F1R4	Bacillus_phage	34.4	3.2e-13
ASR40196.1|214410_214641_-	NrdH-redoxin	NA	X2KRY7	Enterococcus_phage	41.6	3.0e-11
ASR40197.1|214862_215471_+	16S rRNA methyltransferase	NA	NA	NA	NA	NA
ASR41914.1|215499_215937_+|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
ASR40198.1|216172_217882_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	39.3	1.3e-58
ASR40199.1|217903_218218_+	nucleoid-associated protein	NA	NA	NA	NA	NA
ASR40200.1|218246_218846_+	recombination protein RecR	NA	NA	NA	NA	NA
ASR40201.1|218847_219102_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40202.1|219185_219830_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	46.6	1.6e-46
ASR40203.1|219843_220173_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40204.1|220182_221178_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	34.8	7.4e-38
>prophage 2
CP016766	Lactobacillus agilis strain La3, complete genome	2187209	300219	404845	2187209	tRNA,terminase,holin,portal,tail,transposase,capsid,head,protease	Lactobacillus_phage(16.67%)	117	NA	NA
ASR40261.1|300219_301431_+|transposase	transposase	transposase	A0A0P0IJS6	Lactobacillus_phage	57.7	1.7e-124
ASR40262.1|301579_302641_-	luciferase	NA	NA	NA	NA	NA
ASR40263.1|302780_303884_-	dipeptidase	NA	NA	NA	NA	NA
ASR40264.1|304094_305096_+	catabolite control protein A	NA	NA	NA	NA	NA
ASR40265.1|305358_306165_+	Fe-S oxidoreductase	NA	NA	NA	NA	NA
ASR40266.1|306165_307683_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
ASR40267.1|307675_308407_+	lactate utilization protein C	NA	NA	NA	NA	NA
ASR40268.1|308528_309404_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40269.1|309438_309969_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40270.1|310052_310781_+	transcriptional regulator	NA	NA	NA	NA	NA
ASR40271.1|310957_311866_+	ribokinase	NA	NA	NA	NA	NA
ASR40272.1|311940_312903_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
ASR40273.1|312918_314898_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	46.5	1.2e-07
ASR40274.1|315071_316040_+	competence protein ComG	NA	NA	NA	NA	NA
ASR41925.1|316080_317043_+	competence protein ComG	NA	NA	NA	NA	NA
ASR41926.1|317101_318481_-	hypothetical protein	NA	A0A2H4J6X5	uncultured_Caudovirales_phage	47.7	5.0e-117
ASR40275.1|318945_319416_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40276.1|319626_320460_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40277.1|320465_320795_-	hypothetical protein	NA	A0A0M4QX29	Bacillus_phage	44.1	5.5e-14
ASR40278.1|321031_321247_+	transcriptional regulator	NA	A0A1S5SDM7	Streptococcus_phage	55.0	4.4e-12
ASR41927.1|321239_321956_+	antirepressor	NA	A0A0P0IDD0	Lactobacillus_phage	57.7	3.5e-66
ASR40279.1|322052_322250_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40280.1|322236_322536_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40281.1|322549_323104_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40282.1|323241_323817_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41928.1|324041_325229_+	helicase SNF2	NA	A0A2H4J064	uncultured_Caudovirales_phage	53.7	7.6e-114
ASR40283.1|325212_325398_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40284.1|325397_325712_+	hypothetical protein	NA	A0A1B1P7L0	Bacillus_phage	37.5	1.1e-11
ASR40285.1|325711_326125_+	VRR-NUC domain-containing protein	NA	A0A2H4J095	uncultured_Caudovirales_phage	45.0	6.4e-20
ASR41929.1|326175_327801_+	NTP-binding protein	NA	A0A2H4J7Q2	uncultured_Caudovirales_phage	49.7	1.0e-116
ASR40286.1|327820_328273_+	hypothetical protein	NA	A0A2H4J1S8	uncultured_Caudovirales_phage	54.3	4.9e-37
ASR40287.1|328359_330111_+	hypothetical protein	NA	A0A1B1P7M5	Bacillus_phage	53.3	6.9e-172
ASR40288.1|330080_332012_+	hypothetical protein	NA	H7BVJ4	unidentified_phage	46.8	1.8e-157
ASR40289.1|332008_332254_+	hypothetical protein	NA	A0A0E3TAK6	Staphylococcus_phage	48.1	2.6e-08
ASR40290.1|332234_332825_+	hypothetical protein	NA	M1PKJ5	Streptococcus_phage	33.9	7.1e-20
ASR40291.1|332894_333083_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40292.1|333079_333685_+	hypothetical protein	NA	H2A0H0	Bacteroides_phage	38.0	1.4e-23
ASR40293.1|333918_334311_+	hypothetical protein	NA	A0A0S0N9G6	Pseudomonas_phage	36.9	2.0e-10
ASR40294.1|334312_334513_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40295.1|334512_334719_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40296.1|334715_334913_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40297.1|334912_335299_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41930.1|335680_335968_+	hypothetical protein	NA	A0A1S5SA24	Streptococcus_phage	47.1	5.1e-16
ASR40298.1|335960_336149_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40299.1|336151_336355_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40300.1|336370_336835_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40301.1|336835_337033_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40302.1|337026_337272_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40303.1|337268_337487_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40304.1|337483_337816_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40305.1|337799_338057_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40306.1|338053_338470_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41931.1|339267_339477_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40307.1|339478_339799_+	endonuclease	NA	A0A0K2CZH3	Paenibacillus_phage	45.0	1.6e-18
ASR40308.1|339927_340380_+|terminase	terminase	terminase	A6M947	Geobacillus_virus	35.4	1.7e-18
ASR41932.1|340369_342142_+|terminase	terminase	terminase	F8J1B1	Lactobacillus_phage	59.1	7.2e-201
ASR40309.1|342157_343405_+|portal	phage portal protein	portal	A0A0U3SQF0	Bacillus_phage	52.0	2.9e-100
ASR41933.1|343376_344087_+|protease	Clp protease ClpP	protease	A0A0B5A796	Paenibacillus_phage	60.6	8.1e-71
ASR40310.1|344077_345205_+|capsid	major capsid protein	capsid	A0A0C5AEH1	Paenibacillus_phage	46.1	7.8e-84
ASR40311.1|345423_345738_+	DNA packaging protein	NA	NA	NA	NA	NA
ASR40312.1|345734_346073_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
ASR40313.1|346086_346515_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
ASR40314.1|346511_346880_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
ASR40315.1|346899_347535_+|tail	phage tail protein	tail	A0A060AKE9	Staphylococcus_phage	34.0	5.6e-15
ASR40316.1|347534_347921_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40317.1|352410_353226_+|tail	phage tail protein	tail	A0A0B5CTY7	Listeria_phage	33.6	4.3e-07
ASR40318.1|353225_354605_+	peptidase M23	NA	A0A0M7RDS2	Lactobacillus_phage	31.9	3.5e-54
ASR40319.1|354608_355367_+|holin	holin	holin	A0A1U9WQS3	Geobacillus_phage	32.7	3.6e-16
ASR40320.1|355359_355806_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40321.1|355805_357152_+	DUF2479 domain-containing protein	NA	NA	NA	NA	NA
ASR40322.1|357159_357669_+|tail	phage tail protein	tail	A0A288TYH2	Enterococcus_phage	45.6	3.2e-05
ASR40323.1|357674_358571_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40324.1|358584_359052_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40325.1|359070_359433_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40326.1|359626_359932_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40327.1|359928_360225_+	hypothetical protein	NA	A0A0M7REJ4	Lactobacillus_phage	51.6	2.0e-07
ASR40328.1|360217_361498_+	1,4-beta-N-acetylmuramidase	NA	A0A0S2MYF3	Enterococcus_phage	52.6	3.3e-115
ASR40329.1|361694_361886_+	hypothetical protein	NA	F8J1H1	Lactobacillus_phage	45.5	2.1e-05
ASR40330.1|361878_362346_+	Cro/Cl family transcriptional regulator	NA	Q9AZG0	Lactococcus_phage	43.1	1.2e-27
ASR40331.1|362335_362776_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40332.1|363428_363677_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40333.1|363666_364125_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40334.1|364108_364357_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40335.1|364370_364811_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40336.1|364815_365076_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40337.1|365146_366157_+	DNA methyltransferase	NA	NA	NA	NA	NA
ASR40338.1|366303_367665_+	amino acid permease	NA	NA	NA	NA	NA
ASR40339.1|367765_368344_+	transcriptional regulator	NA	NA	NA	NA	NA
ASR40340.1|368355_369132_+	HAD family hydrolase	NA	NA	NA	NA	NA
ASR40341.1|369124_369757_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41934.1|369802_370447_-	cytochrome O ubiquinol oxidase	NA	NA	NA	NA	NA
ASR40342.1|370545_371556_-	ferredoxin--NADP(+) reductase	NA	Q9JRK7	Streptococcus_phage	53.6	2.3e-26
ASR40343.1|371680_372262_+	peptidylprolyl isomerase	NA	A0A076FI46	Aureococcus_anophage	39.4	3.9e-23
ASR40344.1|372382_372772_+	general stress protein	NA	NA	NA	NA	NA
ASR40345.1|380102_381290_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	1.1e-139
ASR40346.1|381517_384031_+	hypothetical protein	NA	A5A5E0	Lactobacillus_phage	38.0	2.2e-17
ASR40347.1|384352_386770_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	72.5	0.0e+00
ASR40348.1|386831_387191_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40349.1|387736_389077_+	amino acid permease	NA	NA	NA	NA	NA
ASR40350.1|389211_390834_+	transporter	NA	NA	NA	NA	NA
ASR40351.1|390841_391555_+	16S rRNA pseudouridine(516) synthase	NA	NA	NA	NA	NA
ASR40352.1|391608_392457_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
ASR40353.1|392557_393958_+	dipeptidase PepV	NA	NA	NA	NA	NA
ASR41935.1|394059_394314_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40354.1|394795_395080_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40355.1|395265_395556_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40356.1|395622_396072_+	universal stress protein UspA	NA	NA	NA	NA	NA
ASR40357.1|396175_396517_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40358.1|396553_396952_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40359.1|396951_397533_+	Rossman fold protein, TIGR00730 family	NA	A0A1G5S9X4	Enterococcus_phage	35.9	2.2e-18
ASR40360.1|397761_399195_+	amino acid permease	NA	NA	NA	NA	NA
ASR40361.1|399267_399825_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40362.1|400083_401277_+	acetate kinase	NA	NA	NA	NA	NA
ASR40363.1|401441_401903_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40364.1|401925_402729_+	hypothetical protein	NA	A0A1V0SD50	Indivirus	34.6	2.9e-08
ASR40365.1|402773_403499_-	deoxyadenosine kinase	NA	C1KFI3	Lactobacillus_virus	58.3	3.6e-74
ASR40366.1|403693_404845_-|transposase	transposase	transposase	C1KFS0	Lactobacillus_virus	46.9	1.4e-93
>prophage 3
CP016766	Lactobacillus agilis strain La3, complete genome	2187209	415533	424551	2187209		Prochlorococcus_phage(33.33%)	7	NA	NA
ASR40376.1|415533_417756_+	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	42.0	1.3e-146
ASR40377.1|417731_419168_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.2	8.4e-59
ASR40378.1|419181_420228_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	42.8	1.4e-58
ASR40379.1|420232_420808_+	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	35.1	2.2e-26
ASR40380.1|420822_422361_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	45.1	3.3e-69
ASR40381.1|422373_423639_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
ASR40382.1|423711_424551_-	2,5-diketo-D-gluconic acid reductase	NA	A0A2H4PQR8	Staphylococcus_phage	39.7	1.1e-47
>prophage 4
CP016766	Lactobacillus agilis strain La3, complete genome	2187209	654579	682840	2187209	terminase,tail,holin,capsid	Lactobacillus_phage(62.5%)	33	NA	NA
ASR40589.1|654579_655041_+	hypothetical protein	NA	A0A1S5RCT5	Lactobacillus_phage	52.4	3.7e-32
ASR41949.1|655602_656019_+	hypothetical protein	NA	B8R690	Lactobacillus_phage	34.0	2.0e-16
ASR40590.1|656097_656763_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40591.1|656743_657871_+	transcriptional regulator	NA	A0A0A7RTT7	Clostridium_phage	33.1	1.3e-49
ASR41950.1|658003_658549_+	hypothetical protein	NA	Q20DE2	Lactobacillus_phage	52.2	1.9e-48
ASR40592.1|659065_659905_+|terminase	terminase	terminase	Q6SE85	Lactobacillus_prophage	63.0	9.9e-84
ASR40593.1|659897_661205_+|terminase	terminase	terminase	A4L7R3	Lactococcus_phage	66.6	1.1e-182
ASR40594.1|661218_662799_+|capsid	capsid protein	capsid	U3PCP8	Lactobacillus_phage	56.7	3.0e-166
ASR40595.1|662755_664354_+	hypothetical protein	NA	U3PFU0	Lactobacillus_phage	54.1	1.1e-107
ASR40596.1|664350_664569_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41951.1|664709_664925_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40597.1|665024_665645_+	hypothetical protein	NA	O03931	Lactobacillus_phage	43.0	3.9e-13
ASR40598.1|665660_666695_+	replication protein	NA	O03966	Lactobacillus_phage	77.3	1.0e-151
ASR40599.1|666711_667098_+	hypothetical protein	NA	Q5YA68	Bacillus_phage	32.8	6.9e-08
ASR40600.1|667091_667442_+|capsid	minor capsid protein	capsid	O03932	Lactobacillus_phage	44.8	1.9e-25
ASR40601.1|667442_667823_+|capsid	capsid protein	capsid	O03933	Lactobacillus_phage	42.3	8.3e-14
ASR40602.1|667812_668202_+|capsid	minor capsid protein	capsid	O03934	Lactobacillus_phage	40.3	5.7e-18
ASR40603.1|668214_668769_+	hypothetical protein	NA	O03972	Lactobacillus_phage	48.2	2.1e-29
ASR40604.1|668849_669284_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40605.1|669296_669935_+	hypothetical protein	NA	O03936	Lactobacillus_phage	36.8	2.1e-22
ASR40606.1|669938_674597_+	hypothetical protein	NA	A0A075KJK1	Lactobacillus_phage	49.6	1.0e-73
ASR40607.1|674583_675312_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41952.1|676475_677264_+|holin	holin	holin	A0A1U9WQS3	Geobacillus_phage	33.2	1.2e-17
ASR40608.1|677280_678135_+	hypothetical protein	NA	A0A1X9IGH6	Lactococcus_phage	43.0	2.2e-22
ASR40609.1|678142_678652_+|tail	phage tail protein	tail	A0A288TYH2	Enterococcus_phage	45.6	1.5e-05
ASR40610.1|678658_679105_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40611.1|679118_679535_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40612.1|679564_679927_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40613.1|680120_680426_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40614.1|680422_680719_+	hypothetical protein	NA	A0A0M7REJ4	Lactobacillus_phage	51.6	2.0e-07
ASR40615.1|680711_681992_+	1,4-beta-N-acetylmuramidase	NA	A0A0S2MYF3	Enterococcus_phage	52.6	3.3e-115
ASR40616.1|682188_682380_+	hypothetical protein	NA	F8J1H1	Lactobacillus_phage	45.5	2.1e-05
ASR40617.1|682372_682840_+	Cro/Cl family transcriptional regulator	NA	Q9AZG0	Lactococcus_phage	43.1	1.2e-27
>prophage 5
CP016766	Lactobacillus agilis strain La3, complete genome	2187209	931687	984681	2187209	tRNA,portal,integrase,transposase	Staphylococcus_phage(12.5%)	51	949578:949594	991046:991062
ASR40840.1|931687_933457_-|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
ASR40841.1|933460_934750_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
ASR40842.1|935340_935916_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
ASR40843.1|935915_937214_+	Uric acid permease PucJ	NA	NA	NA	NA	NA
ASR40844.1|937341_938226_+	N-acetylmuramoyl-L-alanine amidase	NA	E5DV68	Deep-sea_thermophilic_phage	35.9	1.1e-19
ASR40845.1|938237_938687_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40846.1|938724_939342_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40847.1|939345_940290_-	esterase	NA	NA	NA	NA	NA
ASR40848.1|940302_940740_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
ASR40849.1|940752_942981_-	GTP pyrophosphokinase	NA	A0A1S6L1R3	Vibrio_phage	34.8	6.2e-08
ASR40850.1|943028_943361_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40851.1|943532_944270_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
ASR40852.1|944272_945157_-	ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
ASR40853.1|945174_945654_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40854.1|945876_946845_-	hypothetical protein	NA	A0A0N9RUA4	Staphylococcus_phage	51.7	2.4e-89
ASR40855.1|947042_948002_+	nucleoside hydrolase	NA	NA	NA	NA	NA
ASR40856.1|948022_948373_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40857.1|948506_949610_-	o-succinylbenzoate synthase	NA	NA	NA	NA	NA
949578:949594	attL	AATTTCATATACTTTAT	NA	NA	NA	NA
ASR40858.1|949626_950811_-	transporter	NA	NA	NA	NA	NA
ASR41965.1|950794_952099_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40859.1|952245_953139_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40860.1|953135_953948_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41966.1|954018_954636_-|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	42.6	2.4e-34
ASR40861.1|954914_955451_-|transposase	transposase	transposase	NA	NA	NA	NA
ASR40862.1|956706_956907_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40863.1|956899_957151_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40864.1|958827_959943_-	hypothetical protein	NA	S6C485	Thermus_phage	31.2	9.2e-37
ASR40865.1|960114_960708_-	hypothetical protein	NA	A0A1P8VVN6	Streptococcus_phage	44.6	9.9e-06
ASR40866.1|960878_961133_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40867.1|961408_962383_+	hypothetical protein	NA	A0A2H4JB92	uncultured_Caudovirales_phage	33.4	3.7e-26
ASR40868.1|962441_964133_+	hypothetical protein	NA	A7J282	Streptococcus_phage	27.0	6.7e-23
ASR40869.1|964201_964432_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40870.1|964431_964761_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40871.1|965054_965405_+	hypothetical protein	NA	X2KRF8	Campylobacter_phage	41.9	7.1e-12
ASR40872.1|965571_966021_+	hypothetical protein	NA	A0A1J0MG04	Staphylococcus_phage	32.0	1.6e-11
ASR40873.1|966022_967735_+	hypothetical protein	NA	E9LUI0	Lactobacillus_phage	37.0	1.1e-94
ASR40874.1|967879_968938_+|portal	phage portal protein	portal	Q8LTC2	Lactobacillus_phage	24.6	3.9e-13
ASR40875.1|968942_970430_+	hypothetical protein	NA	Q9AZE1	Lactococcus_phage	46.7	1.5e-26
ASR40876.1|970429_970693_+	hypothetical protein	NA	A0A0M4S687	Enterococcus_phage	33.7	2.6e-06
ASR40877.1|970786_971200_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40878.1|971820_972840_-	glycosyl transferase	NA	NA	NA	NA	NA
ASR40879.1|973002_973506_+	hypothetical protein	NA	NA	NA	NA	NA
ASR40880.1|976041_976248_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40881.1|976406_976679_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40882.1|976681_976960_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40883.1|977354_977555_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40884.1|979671_981537_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41967.1|981681_982299_-|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	42.6	2.4e-34
ASR40885.1|982577_983114_-|transposase	transposase	transposase	NA	NA	NA	NA
ASR40886.1|983227_983446_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40887.1|983757_984681_+|integrase	integrase	integrase	H7BVY4	unidentified_phage	31.7	1.1e-32
991046:991062	attR	AATTTCATATACTTTAT	NA	NA	NA	NA
>prophage 6
CP016766	Lactobacillus agilis strain La3, complete genome	2187209	989391	1040816	2187209	integrase,holin,transposase	Megavirus(15.38%)	48	1020399:1020414	1022101:1022116
ASR40892.1|989391_990120_-|holin	choline kinase	holin	NA	NA	NA	NA
ASR40893.1|990112_991864_-|holin	choline kinase	holin	NA	NA	NA	NA
ASR40894.1|992134_993340_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41968.1|993705_994308_+|transposase	transposase	transposase	NA	NA	NA	NA
ASR40895.1|994427_995183_+|integrase	integrase	integrase	NA	NA	NA	NA
ASR40896.1|996948_997305_-|transposase	transposase	transposase	NA	NA	NA	NA
ASR40897.1|997589_998411_-	hypothetical protein	NA	A0A1V0SD50	Indivirus	31.3	6.2e-06
ASR40898.1|998427_999270_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40899.1|999334_1000474_-	UDP-N-acetylglucosamine 2-epimerase	NA	K7YFA0	Megavirus	30.8	9.7e-34
ASR41969.1|1000491_1001556_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40900.1|1001584_1003063_-	O-unit flippase	NA	NA	NA	NA	NA
ASR40901.1|1003090_1004359_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40902.1|1004477_1005479_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40903.1|1005506_1006421_-	dTDP-4-dehydrorhamnose reductase	NA	A0A140G5S3	Enterobacteria_phage	39.7	5.8e-29
ASR40904.1|1006477_1007509_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	39.2	2.1e-59
ASR40905.1|1007520_1008102_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A218MN57	uncultured_virus	46.0	3.6e-32
ASR40906.1|1008120_1008990_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	60.8	4.0e-104
ASR40907.1|1009117_1009843_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40908.1|1009844_1010900_-	nucleotide sugar dehydratase	NA	NA	NA	NA	NA
ASR40909.1|1010899_1011628_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
ASR40910.1|1011657_1012725_-	glycosyl transferase	NA	NA	NA	NA	NA
ASR40911.1|1012753_1013404_-	multidrug MFS transporter	NA	NA	NA	NA	NA
ASR40912.1|1013485_1014256_-	tyrosine protein phosphatase	NA	NA	NA	NA	NA
ASR40913.1|1014262_1015000_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
ASR40914.1|1015012_1015774_-	chain-length determining protein	NA	NA	NA	NA	NA
ASR40915.1|1016360_1017656_-	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
ASR40916.1|1017726_1017915_-	tautomerase	NA	NA	NA	NA	NA
ASR40917.1|1018090_1019527_+	peptidase U34	NA	NA	NA	NA	NA
ASR40918.1|1019537_1020395_+	hypothetical protein	NA	NA	NA	NA	NA
1020399:1020414	attL	AAAAGCCCACCCTGAG	NA	NA	NA	NA
ASR40919.1|1020482_1021187_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	38.8	3.1e-30
ASR40920.1|1021216_1022044_+|integrase	integrase	integrase	NA	NA	NA	NA
ASR41970.1|1022125_1023961_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	26.4	2.8e-22
1022101:1022116	attR	CTCAGGGTGGGCTTTT	NA	NA	NA	NA
ASR40921.1|1024243_1024549_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40922.1|1024739_1025360_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40923.1|1026322_1027468_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	28.3	4.3e-29
ASR40924.1|1027595_1029437_-	molecular chaperone DnaK	NA	A0A2P1EIW2	Megavirus	47.9	7.3e-140
ASR40925.1|1029465_1030035_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
ASR40926.1|1030052_1031090_-	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
ASR40927.1|1031291_1031960_+	fructose-2,6-bisphosphatase	NA	NA	NA	NA	NA
ASR40928.1|1032029_1032566_+|transposase	transposase	transposase	NA	NA	NA	NA
ASR41971.1|1032844_1033462_+|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	42.6	2.4e-34
ASR40929.1|1033529_1034315_-	hypothetical protein	NA	NA	NA	NA	NA
ASR40930.1|1034295_1034511_-	transcriptional regulator	NA	S5M643	Brevibacillus_phage	43.4	8.8e-05
ASR40931.1|1034799_1035282_+	iron transporter FeoA	NA	NA	NA	NA	NA
ASR40932.1|1035278_1037393_+	ferrous iron transport protein B	NA	NA	NA	NA	NA
ASR40933.1|1037703_1038267_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41972.1|1038912_1039248_-	tranposase	NA	A0A0P0IQC6	Lactobacillus_phage	63.8	2.5e-30
ASR40934.1|1039418_1040816_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 7
CP016766	Lactobacillus agilis strain La3, complete genome	2187209	1072344	1081609	2187209	integrase,protease	Ectocarpus_siliculosus_virus(16.67%)	7	1069423:1069437	1079380:1079394
1069423:1069437	attL	AGCAATTGCTTCTTC	NA	NA	NA	NA
ASR40971.1|1072344_1073856_-	two-component sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	25.8	4.5e-10
ASR40972.1|1073857_1074544_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	30.2	8.7e-30
ASR40973.1|1074743_1076165_-	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.0	7.9e-41
ASR40974.1|1076290_1077526_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	57.0	5.3e-134
ASR40975.1|1077619_1078669_-|integrase	integrase	integrase	H7BWC8	unidentified_phage	34.0	1.8e-42
ASR40976.1|1078950_1080264_-	trigger factor	NA	NA	NA	NA	NA
1079380:1079394	attR	AGCAATTGCTTCTTC	NA	NA	NA	NA
ASR40977.1|1080421_1081609_-	translation elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.5	8.9e-30
>prophage 8
CP016766	Lactobacillus agilis strain La3, complete genome	2187209	1311788	1378386	2187209	tRNA,integrase,protease,transposase	Bacillus_phage(11.76%)	60	1355974:1355990	1389696:1389712
ASR41188.1|1311788_1312451_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
ASR41189.1|1312434_1313004_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
ASR41190.1|1313473_1314466_+	lactate dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	37.5	5.7e-46
ASR41191.1|1314554_1316642_-	penicillin-binding protein	NA	NA	NA	NA	NA
ASR41192.1|1316867_1319507_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41193.1|1319552_1320071_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	41.7	3.5e-31
ASR41984.1|1320100_1322428_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	33.0	8.8e-82
ASR41194.1|1322441_1323251_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
ASR41195.1|1323268_1324207_-	ribonuclease Z	NA	NA	NA	NA	NA
ASR41196.1|1324409_1324850_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41197.1|1325089_1326025_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41198.1|1326089_1327958_-	acyltransferase	NA	B5WZU0	Pseudomonas_phage	30.4	5.1e-32
ASR41199.1|1328111_1328405_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41200.1|1328401_1329280_-	acyltransferase	NA	NA	NA	NA	NA
ASR41201.1|1329281_1330559_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41202.1|1330689_1331940_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
ASR41203.1|1331939_1332170_-	D-alanine--poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
ASR41204.1|1332196_1333396_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	A0A125RNP0	Pseudomonas_phage	27.2	2.8e-23
ASR41205.1|1333395_1334907_-	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	30.5	1.6e-47
ASR41206.1|1334921_1335068_-	D-alanyl-lipoteichoic acid biosynthesis protein	NA	NA	NA	NA	NA
ASR41207.1|1335235_1337098_-	potassium transporter	NA	NA	NA	NA	NA
ASR41208.1|1337248_1338814_-	ribonuclease Y	NA	NA	NA	NA	NA
ASR41209.1|1338988_1340071_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	66.1	1.3e-123
ASR41210.1|1340144_1341395_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
ASR41211.1|1341529_1342123_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
ASR41212.1|1342138_1343062_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41213.1|1343173_1343899_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
ASR41214.1|1343906_1345202_-|protease	zinc protease	protease	M1NN74	Moumouvirus	30.7	9.4e-17
ASR41215.1|1345201_1346464_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41216.1|1346477_1348781_-	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	46.3	7.9e-83
ASR41217.1|1348898_1349411_-|tRNA	tRNA (uridine(34)/cytosine(34/5- carboxymethylaminomethyluridine(34)-2'-O))- methyltransferase TrmL	tRNA	NA	NA	NA	NA
ASR41218.1|1349598_1350108_-|tRNA	aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
ASR41219.1|1350298_1351279_+	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	73.0	3.9e-140
ASR41220.1|1351491_1352763_+	glutamate/aspartate:proton symporter GltP	NA	NA	NA	NA	NA
ASR41221.1|1352816_1353167_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
ASR41222.1|1353321_1354335_+	6-phosphogluconolactonase	NA	NA	NA	NA	NA
ASR41985.1|1354403_1355021_-|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	42.6	4.0e-34
ASR41223.1|1355299_1355836_-|transposase	transposase	transposase	NA	NA	NA	NA
1355974:1355990	attL	GCAATTATCCCACTAAA	NA	NA	NA	NA
ASR41224.1|1356011_1356494_+	hypothetical protein	NA	E7DN70	Pneumococcus_phage	36.0	3.4e-12
ASR41225.1|1356506_1356737_+	hypothetical protein	NA	A8AT88	Listeria_phage	35.9	3.2e-05
ASR41986.1|1356732_1357494_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
ASR41226.1|1357561_1358926_-	magnesium transporter	NA	NA	NA	NA	NA
ASR41227.1|1358941_1359835_-	RNA pseudouridine synthase	NA	NA	NA	NA	NA
ASR41228.1|1359824_1360643_-	NAD kinase	NA	NA	NA	NA	NA
ASR41229.1|1360656_1361298_-	GTP pyrophosphokinase	NA	NA	NA	NA	NA
ASR41230.1|1361453_1362101_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41231.1|1362150_1363959_-	oligoendopeptidase F	NA	NA	NA	NA	NA
ASR41232.1|1364002_1364920_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41233.1|1365093_1365852_-	adaptor protein MecA	NA	NA	NA	NA	NA
ASR41234.1|1365968_1366370_-	transcriptional regulator Spx	NA	NA	NA	NA	NA
ASR41235.1|1366718_1367279_+	D-alanyl-D-alanine dipeptidase	NA	NA	NA	NA	NA
ASR41987.1|1367422_1368967_-	cardiolipin synthase	NA	NA	NA	NA	NA
ASR41988.1|1369033_1369636_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.8	3.2e-52
ASR41989.1|1369650_1371813_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	60.1	3.4e-253
ASR41236.1|1372024_1372588_+	TIGR01440 family protein	NA	NA	NA	NA	NA
ASR41237.1|1372659_1373961_-	ammonia permease	NA	H8ZJB2	Ostreococcus_tauri_virus	31.5	9.7e-38
ASR41238.1|1374171_1375821_-	phosphoenolpyruvate carboxykinase	NA	NA	NA	NA	NA
ASR41239.1|1375996_1376599_-	nitroreductase	NA	NA	NA	NA	NA
ASR41240.1|1376824_1377529_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	38.8	3.1e-30
ASR41241.1|1377558_1378386_+|integrase	integrase	integrase	NA	NA	NA	NA
1389696:1389712	attR	GCAATTATCCCACTAAA	NA	NA	NA	NA
>prophage 9
CP016766	Lactobacillus agilis strain La3, complete genome	2187209	1445848	1476741	2187209	tRNA,transposase	Erysipelothrix_phage(33.33%)	28	NA	NA
ASR41292.1|1445848_1447180_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	32.1	2.5e-49
ASR41293.1|1447286_1448444_-	hypothetical protein	NA	D2KRB9	Lactobacillus_phage	40.0	8.7e-14
ASR41294.1|1448662_1449685_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41295.1|1449700_1450651_-	malate transporter	NA	NA	NA	NA	NA
ASR41994.1|1450821_1451439_-|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	42.6	5.3e-34
ASR41296.1|1451717_1452254_-|transposase	transposase	transposase	NA	NA	NA	NA
ASR41297.1|1452329_1453127_-	hydrolase	NA	NA	NA	NA	NA
ASR41298.1|1453197_1455357_-	PTS glucose/maltose transporter subunit IIBCA	NA	NA	NA	NA	NA
ASR41299.1|1455614_1456769_+	LytR family transcriptional regulator	NA	NA	NA	NA	NA
ASR41300.1|1456835_1457096_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41301.1|1457733_1458327_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41302.1|1458509_1458842_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41995.1|1459355_1459742_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41303.1|1460065_1460395_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41304.1|1460476_1461085_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41305.1|1461133_1461388_-	thiamine permease	NA	NA	NA	NA	NA
ASR41306.1|1462022_1462547_+	hypothetical protein	NA	A0A2K5B2B4	Erysipelothrix_phage	61.9	1.8e-51
ASR41996.1|1462582_1463524_-|transposase	transposase	transposase	A0A218MNE7	uncultured_virus	32.0	2.7e-37
ASR41307.1|1463882_1464116_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41308.1|1464171_1464519_-|transposase	transposase	transposase	NA	NA	NA	NA
ASR41309.1|1464511_1464694_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41310.1|1465016_1468985_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41311.1|1469934_1470558_+	hypothetical protein	NA	A0A2K5B2B4	Erysipelothrix_phage	60.5	1.2e-65
ASR41312.1|1470645_1471107_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41313.1|1471432_1472806_-	23S rRNA (uracil-5-)-methyltransferase RumA	NA	A0A2K5B251	Erysipelothrix_phage	48.8	3.0e-122
ASR41314.1|1472906_1473914_-	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.3	2.3e-18
ASR41315.1|1473935_1475369_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
ASR41316.1|1475565_1476741_-|transposase	transposase	transposase	C1KFS0	Lactobacillus_virus	46.9	4.7e-92
>prophage 10
CP016766	Lactobacillus agilis strain La3, complete genome	2187209	1565458	1629158	2187209	tRNA,integrase,transposase	Lactobacillus_phage(30.0%)	57	1559815:1559832	1604743:1604760
1559815:1559832	attL	TTCTACCACTGAACTACT	NA	NA	NA	NA
ASR41381.1|1565458_1566715_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	41.7	2.5e-83
ASR41382.1|1566985_1567438_-	transcriptional repressor	NA	NA	NA	NA	NA
ASR41383.1|1567555_1568143_-	TcpI protein	NA	NA	NA	NA	NA
ASR41384.1|1568231_1569410_-	acetate kinase	NA	NA	NA	NA	NA
ASR41385.1|1569503_1570508_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
ASR42006.1|1570663_1571881_+|transposase	transposase	transposase	A0A0P0IJS6	Lactobacillus_phage	57.7	9.2e-123
ASR41386.1|1572164_1572401_-	cytochrome B5	NA	NA	NA	NA	NA
ASR41387.1|1572481_1573435_-	peroxidase	NA	NA	NA	NA	NA
ASR41388.1|1573796_1574357_+	ABC transporter permease	NA	NA	NA	NA	NA
ASR41389.1|1574356_1575760_+	ABC transporter	NA	NA	NA	NA	NA
ASR41390.1|1575752_1576418_+	ABC transporter permease	NA	NA	NA	NA	NA
ASR41391.1|1576590_1576770_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41392.1|1576902_1577538_-	hypothetical protein	NA	A0A0E3XCL7	Enterococcus_phage	41.6	9.0e-21
ASR41393.1|1578098_1578464_+	mechanosensitive ion channel protein MscL	NA	NA	NA	NA	NA
ASR41394.1|1578515_1579223_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41395.1|1579347_1579983_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41396.1|1579955_1580660_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	38.8	6.9e-30
ASR41397.1|1580689_1581517_+|integrase	integrase	integrase	NA	NA	NA	NA
ASR41398.1|1581556_1581937_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41399.1|1582034_1583402_-	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
ASR41400.1|1583447_1583807_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41401.1|1583920_1585015_+	phosphoesterase	NA	NA	NA	NA	NA
ASR41402.1|1585057_1585855_+	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
ASR41403.1|1585900_1586566_-	hypothetical protein	NA	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	29.9	7.7e-15
ASR41404.1|1586616_1587099_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41405.1|1587207_1587894_-	phosphoglyceromutase	NA	NA	NA	NA	NA
ASR41406.1|1587983_1589174_-	aminotransferase	NA	NA	NA	NA	NA
ASR41407.1|1589175_1590243_-	AI-2E family transporter	NA	NA	NA	NA	NA
ASR41408.1|1590381_1591281_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41409.1|1591354_1592206_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41410.1|1592395_1593445_-	galactose mutarotase	NA	NA	NA	NA	NA
ASR41411.1|1593870_1594173_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41412.1|1594292_1595294_-	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	36.6	3.0e-47
ASR41413.1|1595492_1596218_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
ASR41414.1|1596369_1598739_+	phosphoketolase	NA	NA	NA	NA	NA
ASR41415.1|1598885_1600217_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	32.1	2.5e-49
ASR41416.1|1600491_1600920_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41417.1|1600981_1601572_+	phosphoglycerate mutase	NA	NA	NA	NA	NA
ASR41418.1|1601617_1602802_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41419.1|1602936_1603782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
ASR41420.1|1603823_1604669_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41421.1|1605157_1605673_+	hypothetical protein	NA	NA	NA	NA	NA
1604743:1604760	attR	AGTAGTTCAGTGGTAGAA	NA	NA	NA	NA
ASR41422.1|1605719_1606202_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41423.1|1606241_1606760_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
ASR41424.1|1606875_1607364_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41425.1|1607408_1607909_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41426.1|1608000_1608522_-|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	NA	NA	NA	NA
ASR41427.1|1608521_1612238_-	hypothetical protein	NA	NA	NA	NA	NA
ASR42007.1|1613033_1613891_-	fructosamine kinase	NA	NA	NA	NA	NA
ASR41428.1|1614032_1616450_-	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	65.0	7.3e-305
ASR41429.1|1616464_1617019_-	NADPH-dependent FMN reductase	NA	A0A2P0ZL77	Lactobacillus_phage	58.0	7.8e-53
ASR41430.1|1617183_1618764_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41431.1|1618868_1620227_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41432.1|1620239_1621091_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41433.1|1621187_1622294_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
ASR42008.1|1627725_1628343_-|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	42.6	2.4e-34
ASR41434.1|1628621_1629158_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 11
CP016766	Lactobacillus agilis strain La3, complete genome	2187209	1636139	1696075	2187209	transposase	Streptococcus_phage(28.57%)	50	NA	NA
ASR41441.1|1636139_1636820_+|transposase	transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	2.6e-127
ASR41442.1|1636995_1637313_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41443.1|1637629_1638337_-	aquaporin	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	31.9	9.3e-27
ASR41444.1|1638372_1640202_-	alpha-glycerophosphate oxidase	NA	NA	NA	NA	NA
ASR41445.1|1640213_1641728_-	glycerol kinase	NA	NA	NA	NA	NA
ASR42009.1|1642376_1644059_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41446.1|1644102_1644915_-	paraslipin	NA	NA	NA	NA	NA
ASR41447.1|1644929_1645292_-	hypothetical protein	NA	NA	NA	NA	NA
ASR42010.1|1645406_1646051_-	NAD(P)H-dependent quinone reductase	NA	NA	NA	NA	NA
ASR41448.1|1646238_1646553_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41449.1|1646705_1647263_-	elongation factor P	NA	NA	NA	NA	NA
ASR41450.1|1647400_1648228_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	69.6	2.5e-103
ASR41451.1|1648358_1649234_-	fructokinase	NA	NA	NA	NA	NA
ASR41452.1|1649397_1649781_+	glyoxalase	NA	NA	NA	NA	NA
ASR41453.1|1649850_1651899_-	aconitate hydratase	NA	NA	NA	NA	NA
ASR41454.1|1652178_1653957_-	oleate hydratase	NA	NA	NA	NA	NA
ASR41455.1|1654134_1654965_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41456.1|1654957_1656670_-	heme ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.2	2.3e-23
ASR41457.1|1656673_1657228_-	ECF transporter S component	NA	NA	NA	NA	NA
ASR41458.1|1657324_1657813_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41459.1|1657850_1659272_-	peptidase C69	NA	NA	NA	NA	NA
ASR41460.1|1660110_1660848_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41461.1|1660860_1661922_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41462.1|1661936_1662617_-	GMP synthase	NA	NA	NA	NA	NA
ASR41463.1|1663339_1664071_-	hypothetical protein	NA	S5MAL1	Bacillus_phage	48.8	9.6e-43
ASR41464.1|1664266_1665235_+	transcriptional regulator	NA	NA	NA	NA	NA
ASR41465.1|1665284_1666016_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41466.1|1666400_1666805_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41467.1|1666964_1668233_-	galactoside permease	NA	NA	NA	NA	NA
ASR41468.1|1668250_1669603_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	26.9	7.3e-28
ASR41469.1|1669739_1670729_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
ASR41470.1|1670862_1671960_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41471.1|1672049_1672586_+|transposase	transposase	transposase	NA	NA	NA	NA
ASR42011.1|1672864_1673482_+|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	42.6	4.0e-34
ASR41472.1|1673541_1674534_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41473.1|1674624_1676007_-	argininosuccinate lyase	NA	NA	NA	NA	NA
ASR41474.1|1676006_1677215_-	argininosuccinate synthase	NA	NA	NA	NA	NA
ASR41475.1|1677490_1678027_+|transposase	transposase	transposase	NA	NA	NA	NA
ASR42012.1|1678305_1678923_+|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	42.6	2.4e-34
ASR41476.1|1679200_1680352_+|transposase	transposase	transposase	C1KFS0	Lactobacillus_virus	46.4	2.7e-92
ASR41477.1|1680752_1681712_-	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	34.6	5.1e-44
ASR41478.1|1682050_1683676_+	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
ASR41479.1|1683697_1684669_+	malate permease	NA	NA	NA	NA	NA
ASR41480.1|1684764_1684980_-	addiction module antidote protein, HigA family	NA	M9MUN2	Rhodococcus_phage	49.1	3.8e-08
ASR41481.1|1685672_1686926_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	51.8	4.0e-105
ASR41482.1|1686930_1687737_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	41.6	1.1e-44
ASR41483.1|1687917_1688826_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41484.1|1688853_1691895_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41485.1|1692512_1694630_-	ornithine decarboxylase	NA	NA	NA	NA	NA
ASR41486.1|1694923_1696075_+|transposase	transposase	transposase	C1KFS0	Lactobacillus_virus	47.2	3.8e-94
>prophage 12
CP016766	Lactobacillus agilis strain La3, complete genome	2187209	1714379	1760140	2187209	transposase	Streptococcus_phage(38.89%)	39	NA	NA
ASR41504.1|1714379_1715597_-|transposase	transposase	transposase	A0A0P0IJS6	Lactobacillus_phage	57.5	7.0e-123
ASR41505.1|1715960_1716491_+	ECF transporter S component	NA	NA	NA	NA	NA
ASR41506.1|1716545_1717130_-	uracil-DNA glycosylase	NA	NA	NA	NA	NA
ASR41507.1|1717263_1718442_-	3-phosphoglycerate dehydrogenase	NA	M1NSB9	Streptococcus_phage	44.1	7.8e-95
ASR41508.1|1718445_1719540_-	phosphoserine transaminase	NA	M1Q1P2	Streptococcus_phage	49.7	1.4e-93
ASR41509.1|1720094_1721519_+	hypothetical protein	NA	D2KRB9	Lactobacillus_phage	40.2	2.3e-16
ASR41510.1|1721578_1722082_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41511.1|1722672_1723065_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41512.1|1723084_1724863_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41513.1|1725069_1726449_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
ASR41514.1|1726584_1729209_+	ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	27.7	1.2e-58
ASR41515.1|1729543_1730698_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
ASR41516.1|1730706_1731951_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41517.1|1731943_1732834_-	sodium ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.1e-19
ASR42013.1|1732936_1733233_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41518.1|1733311_1734019_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41519.1|1734160_1735186_-	hypothetical protein	NA	A0A1L2BY83	Clostridium_phage	44.3	5.3e-07
ASR41520.1|1735371_1738344_-	DNA helicase	NA	A0A097BY72	Enterococcus_phage	25.5	2.9e-29
ASR41521.1|1738330_1738753_-	7,8-dihydro-8-oxoguanine-triphosphatase	NA	NA	NA	NA	NA
ASR41522.1|1738905_1739985_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41523.1|1740305_1740842_+|transposase	transposase	transposase	NA	NA	NA	NA
ASR42014.1|1741120_1741738_+|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	42.6	2.4e-34
ASR41524.1|1741812_1742388_-	hypothetical protein	NA	NA	NA	NA	NA
ASR41525.1|1742817_1743753_-	restriction endonuclease	NA	NA	NA	NA	NA
ASR41526.1|1743950_1745858_-	copper-transporting ATPase	NA	A0A218MNH6	uncultured_virus	37.4	1.8e-93
ASR41527.1|1745857_1746226_-	copper-binding protein	NA	NA	NA	NA	NA
ASR41528.1|1746385_1746676_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41529.1|1746838_1747165_+	hypothetical protein	NA	NA	NA	NA	NA
ASR41530.1|1747520_1747790_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
ASR41531.1|1748768_1749305_-|transposase	transposase	transposase	NA	NA	NA	NA
ASR41532.1|1749369_1751289_-	tetracycline resistance ribosomal protection protein	NA	A0A1S5SF82	Streptococcus_phage	98.3	0.0e+00
ASR41533.1|1751665_1752595_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	56.6	1.9e-83
ASR41534.1|1752611_1753634_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	75.5	3.1e-132
ASR41535.1|1753630_1755658_-	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	65.5	2.3e-195
ASR41536.1|1755654_1756380_-	hypothetical protein	NA	A0A1S5SF64	Streptococcus_phage	84.5	6.9e-110
ASR42015.1|1756390_1757008_-|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	42.6	4.0e-34
ASR41537.1|1757286_1757823_-|transposase	transposase	transposase	NA	NA	NA	NA
ASR41538.1|1758184_1759363_-	hypothetical protein	NA	Q6SEA7	Lactobacillus_prophage	34.5	8.2e-44
ASR41539.1|1759468_1760140_-	hypothetical protein	NA	Q8SDV8	Staphylococcus_phage	36.2	5.6e-05
>prophage 13
CP016766	Lactobacillus agilis strain La3, complete genome	2187209	2091182	2098242	2187209	transposase	Planktothrix_phage(33.33%)	6	NA	NA
ASR41806.1|2091182_2092226_+	peptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.6	6.4e-16
ASR41807.1|2092248_2093205_+	peptide ABC transporter substrate-binding protein	NA	G9BWD6	Planktothrix_phage	33.3	4.6e-21
ASR41808.1|2093553_2094771_-|transposase	transposase	transposase	A0A0P0IJS6	Lactobacillus_phage	57.6	5.9e-122
ASR41809.1|2094927_2095617_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	37.6	3.3e-37
ASR41810.1|2095630_2096788_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	32.0	6.6e-30
ASR41811.1|2096910_2098242_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	25.8	4.1e-15
