The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP024619	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 chromosome, complete genome	4835517	1128788	1286357	4835517	tRNA,portal,capsid,lysis,integrase,head,transposase,holin,plate,tail,terminase	Salmonella_phage(48.84%)	155	1189881:1189897	1239039:1239055
ATU59431.1|1128788_1129951_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.9	5.2e-51
ATU59432.1|1130229_1132212_+	DNA helicase	NA	NA	NA	NA	NA
ATU59433.1|1132208_1132847_+	hypothetical protein	NA	NA	NA	NA	NA
ATU59434.1|1134560_1135157_-	DUF4102 domain-containing protein	NA	A0A1B5FPC6	Escherichia_phage	91.3	2.6e-99
ATU62896.1|1135734_1137018_+	hypothetical protein	NA	NA	NA	NA	NA
ATU59435.1|1137277_1139152_-	hypothetical protein	NA	NA	NA	NA	NA
ATU59436.1|1139317_1140193_-|integrase	integrase	integrase	NA	NA	NA	NA
ATU59437.1|1141127_1141310_-	hypothetical protein	NA	NA	NA	NA	NA
ATU59438.1|1141309_1142989_-	SgrR family transcriptional regulator	NA	NA	NA	NA	NA
ATU59439.1|1143211_1144753_+	PTS glucose transporter subunit IIABC	NA	NA	NA	NA	NA
ATU59440.1|1144882_1145725_+	cytoplasmic protein	NA	NA	NA	NA	NA
ATU59441.1|1145721_1146288_+	6-phospho-3-hexuloisomerase	NA	NA	NA	NA	NA
ATU59442.1|1146311_1146947_+	3-hexulose-6-phosphate synthase	NA	NA	NA	NA	NA
ATU59443.1|1147020_1148223_-	DUF3883 domain-containing protein	NA	NA	NA	NA	NA
ATU59444.1|1148517_1149531_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
ATU59445.1|1149541_1150522_-	PTS sorbitol transporter subunit IIB	NA	NA	NA	NA	NA
ATU59446.1|1150518_1150893_-	PTS sorbitol transporter	NA	NA	NA	NA	NA
ATU59447.1|1150889_1151411_-	PTS sorbitol transporter subunit IIC	NA	NA	NA	NA	NA
ATU59448.1|1151523_1151808_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	64.7	5.4e-18
ATU59449.1|1151902_1152259_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
ATU62897.1|1152412_1153231_-	DUF4435 domain-containing protein	NA	NA	NA	NA	NA
ATU59450.1|1153275_1154559_-	ATPase	NA	NA	NA	NA	NA
ATU59451.1|1155061_1157131_-	DUF927 domain-containing protein	NA	A0A1B0VP75	Pseudomonas_phage	35.1	1.7e-73
ATU59452.1|1157166_1157382_-	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
ATU59453.1|1157832_1158660_+	hypothetical protein	NA	NA	NA	NA	NA
ATU59454.1|1158994_1160188_-	hypothetical protein	NA	NA	NA	NA	NA
ATU62898.1|1160577_1161171_-	hypothetical protein	NA	NA	NA	NA	NA
ATU59455.1|1162791_1163817_-|integrase	integrase	integrase	A0A1S6L016	Salmonella_phage	95.9	4.0e-196
ATU59456.1|1163820_1164453_-	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	56.7	1.5e-63
ATU59457.1|1164572_1164821_+	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	70.7	8.9e-25
ATU59458.1|1164853_1165363_+	hypothetical protein	NA	A0A1S6L008	Salmonella_phage	93.5	3.5e-84
ATU59459.1|1165370_1165604_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	59.1	3.6e-12
ATU59460.1|1165551_1166010_-	hypothetical protein	NA	NA	NA	NA	NA
ATU59461.1|1166229_1166571_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	85.0	4.2e-49
ATU59462.1|1166638_1166872_+	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	3.4e-26
ATU59463.1|1166871_1167099_+	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	93.3	1.3e-35
ATU59464.1|1167095_1167953_+	DNA adenine methylase	NA	A0A1S6L011	Salmonella_phage	79.6	1.8e-128
ATU59465.1|1167943_1170352_+	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	95.3	0.0e+00
ATU59466.1|1170513_1170702_+	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	98.4	6.1e-26
ATU59467.1|1170713_1170947_+	DinI family protein	NA	A0A1S6L014	Salmonella_phage	94.8	4.4e-34
ATU59468.1|1171073_1171793_+	hypothetical protein	NA	NA	NA	NA	NA
ATU59469.1|1172154_1173207_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.3e-178
ATU59470.1|1173206_1174973_-	oxidoreductase	NA	A0A1S6KZW3	Salmonella_phage	97.8	0.0e+00
ATU59471.1|1175115_1175949_+|capsid	capsid protein	capsid	E5G6M5	Salmonella_phage	100.0	3.1e-130
ATU59472.1|1175965_1177048_+|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	97.1	1.7e-189
ATU59473.1|1177051_1177705_+	hypothetical protein	NA	A0A1S6KZX1	Salmonella_phage	98.2	1.3e-112
ATU59474.1|1177798_1178263_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	92.2	3.4e-78
ATU59475.1|1178262_1178466_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
ATU59476.1|1178469_1178685_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
ATU62899.1|1178704_1179181_+	lysozyme	NA	E5G6N1	Salmonella_phage	91.8	5.2e-82
ATU59477.1|1179177_1179606_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	91.5	1.5e-59
ATU59478.1|1179535_1179736_+	hypothetical protein	NA	A0A1S6KZX6	Salmonella_phage	75.8	1.1e-22
ATU59479.1|1179701_1180133_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	93.0	2.9e-71
ATU59480.1|1180125_1180572_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	84.2	3.3e-62
ATU59481.1|1180640_1181219_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.0	1.1e-107
ATU59482.1|1181215_1181575_+|plate	baseplate assembly protein	plate	E5G6N7	Salmonella_phage	95.8	2.3e-58
ATU59483.1|1181561_1182470_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	99.3	3.5e-159
ATU59484.1|1182462_1183068_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	98.0	1.9e-116
ATU59485.1|1183064_1184684_+|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	91.8	1.4e-155
ATU59486.1|1184690_1185098_+|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
ATU59487.1|1185295_1186018_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
ATU59488.1|1186231_1186450_+	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
ATU59489.1|1186552_1187725_+|tail	phage tail protein	tail	A0A1S6KZY7	Salmonella_phage	99.7	5.7e-223
ATU59490.1|1187734_1188250_+|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	100.0	9.3e-93
ATU59491.1|1188304_1188607_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	100.0	1.5e-45
ATU59492.1|1188621_1188741_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	100.0	1.8e-15
ATU59493.1|1188733_1191541_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	100.0	0.0e+00
1189881:1189897	attL	CGGAAATCGCCGCCAGC	NA	NA	NA	NA
ATU59494.1|1191537_1192023_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	99.4	4.4e-76
ATU59495.1|1192019_1193120_+	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	99.7	2.2e-200
ATU62900.1|1193186_1193405_+	levansucrase regulator	NA	Q53ZE7	Salmonella_virus	76.4	8.3e-27
ATU59496.1|1193689_1194280_+	ORF6N domain-containing protein	NA	A0A0P0ZC44	Stx2-converting_phage	75.9	4.4e-46
ATU62901.1|1194784_1195948_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
ATU59497.1|1195955_1198136_-	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
ATU59498.1|1198132_1199542_-	type I secretion protein TolC	NA	NA	NA	NA	NA
ATU59499.1|1199606_1211081_-	biofilm-associated protein BapA	NA	NA	NA	NA	NA
ATU62902.1|1211694_1212177_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
ATU59500.1|1212326_1212803_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
ATU59501.1|1212792_1213083_+	RnfH family protein	NA	NA	NA	NA	NA
ATU59502.1|1213248_1213587_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
ATU59503.1|1213735_1215397_-	DNA repair protein RecN	NA	NA	NA	NA	NA
ATU59504.1|1215482_1216361_-	NAD(+) kinase	NA	NA	NA	NA	NA
ATU62903.1|1216292_1216487_+	molecular chaperone GrpE	NA	NA	NA	NA	NA
ATU59505.1|1216483_1217074_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
ATU59506.1|1217108_1217714_-	cytoplasmic protein	NA	NA	NA	NA	NA
ATU59507.1|1217834_1219076_-	DUF21 domain-containing protein	NA	NA	NA	NA	NA
ATU59508.1|1219140_1219932_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
ATU59509.1|1219877_1220174_-	hypothetical protein	NA	NA	NA	NA	NA
ATU59510.1|1220097_1221459_+	signal recognition particle protein	NA	NA	NA	NA	NA
ATU62904.1|1221772_1222021_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
ATU59511.1|1222039_1222588_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
ATU59512.1|1222632_1223400_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
ATU59513.1|1223440_1223788_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
ATU59514.1|1223944_1225165_-	diguanylate cyclase	NA	A0A2K8I9Y5	Pseudomonas_phage	36.2	5.8e-08
ATU59515.1|1225157_1225676_-	YfiR family protein	NA	NA	NA	NA	NA
ATU59516.1|1226115_1227186_+	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
ATU59517.1|1227195_1228317_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
ATU59518.1|1228374_1229283_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
ATU59519.1|1229243_1230404_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
AXA99196.1|1230503_1230551_-	hypothetical protein	NA	NA	NA	NA	NA
ATU59520.1|1230714_1231734_-|integrase	integrase	integrase	A0A0F7LBR0	Escherichia_phage	58.2	1.4e-108
ATU59521.1|1231773_1232079_-	XRE family transcriptional regulator	NA	A0A0M5M1I9	Salmonella_phage	47.5	1.6e-15
ATU59522.1|1232176_1232515_+	hypothetical protein	NA	NA	NA	NA	NA
ATU59523.1|1232540_1232873_+	hypothetical protein	NA	NA	NA	NA	NA
ATU59524.1|1232882_1233452_+	3'-5' exoribonuclease	NA	K7PLW7	Enterobacteria_phage	47.4	1.2e-43
ATU59525.1|1233454_1233673_+	hypothetical protein	NA	A0A286S1P6	Klebsiella_phage	45.0	2.8e-06
ATU59526.1|1233712_1236367_+	bifunctional DNA primase/helicase	NA	A0A077K8T2	Ralstonia_phage	46.6	2.1e-241
ATU59527.1|1236504_1237467_+	hypothetical protein	NA	NA	NA	NA	NA
ATU59528.1|1237510_1237840_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	58.2	8.7e-28
ATU59529.1|1237839_1238859_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	68.5	6.1e-136
ATU59530.1|1238855_1240640_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	69.5	5.1e-247
1239039:1239055	attR	GCTGGCGGCGATTTCCG	NA	NA	NA	NA
ATU59531.1|1240783_1241620_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	49.2	4.8e-46
ATU59532.1|1241654_1242683_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	71.6	2.8e-133
ATU59533.1|1242694_1243393_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	52.6	3.6e-63
ATU59534.1|1243411_1243603_+	hypothetical protein	NA	NA	NA	NA	NA
ATU59535.1|1243696_1244149_+|head	head completion protein	head	F1BUL8	Cronobacter_phage	63.3	2.7e-48
ATU59536.1|1244145_1244628_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	48.7	3.0e-37
ATU59537.1|1244624_1245329_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	59.9	1.8e-70
ATU59538.1|1245325_1246453_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.2	5.6e-175
ATU59539.1|1246449_1246905_+	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	71.5	1.7e-58
ATU59540.1|1246917_1247214_+|holin	holin	holin	C7BGD7	Burkholderia_phage	48.2	2.4e-16
ATU59541.1|1247210_1247552_+	M15 family peptidase	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
ATU59542.1|1247551_1247884_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.0	4.4e-35
ATU59543.1|1247810_1248044_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	83.1	1.7e-30
ATU59544.1|1248021_1248288_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	61.0	2.4e-20
ATU59545.1|1248475_1250443_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	70.4	4.7e-270
ATU59546.1|1250439_1250769_+	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
ATU59547.1|1250765_1251950_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	77.9	2.6e-178
ATU59548.1|1251936_1252530_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.1	1.4e-89
ATU59549.1|1252539_1254777_+|tail	phage tail protein	tail	Q8HAB4	Salmonella_phage	87.3	7.4e-219
ATU59550.1|1254746_1255352_+|tail	tail fiber assembly protein	tail	Q8HAB3	Salmonella_phage	94.7	3.4e-102
ATU59551.1|1255341_1256067_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	56.8	1.7e-68
ATU59552.1|1256038_1256584_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	71.4	3.5e-58
ATU59553.1|1256583_1258287_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.1	4.9e-223
AXA99174.1|1258276_1258540_-	hypothetical protein	NA	NA	NA	NA	NA
ATU59554.1|1259841_1260228_-	hypothetical protein	NA	NA	NA	NA	NA
ATU59555.1|1260385_1260724_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
ATU59556.1|1260995_1261733_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
ATU59557.1|1261864_1262845_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
ATU59558.1|1262841_1263573_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
ATU59559.1|1263702_1266276_+	chaperone protein ClpB	NA	H6X3M6	Enterobacteria_phage	35.6	9.0e-128
AXA99175.1|1266471_1266672_-	hypothetical protein	NA	NA	NA	NA	NA
ATU59560.1|1272156_1272612_+	DUF4385 domain-containing protein	NA	E3SMI8	Prochlorococcus_phage	50.0	3.0e-34
ATU59561.1|1272715_1274017_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.4	6.9e-44
ATU59562.1|1274013_1274337_-	YfiM family lipoprotein	NA	NA	NA	NA	NA
ATU59563.1|1274381_1275737_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
ATU59564.1|1275851_1278512_-	protein lysine acetyltransferase Pat	NA	NA	NA	NA	NA
ATU59565.1|1278565_1279246_-	DTW domain-containing protein	NA	NA	NA	NA	NA
ATU59566.1|1279318_1279738_-	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	40.6	1.2e-16
ATU59567.1|1279941_1280979_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
ATU59568.1|1281094_1281784_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
ATU59569.1|1282102_1282486_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
ATU59570.1|1282547_1283135_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA	NA
ATU62905.1|1283237_1284137_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
ATU59571.1|1284154_1285489_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
ATU59572.1|1285619_1286357_+|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	tRNA	NA	NA	NA	NA
>prophage 2
CP024619	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 chromosome, complete genome	4835517	1677673	1689964	4835517	holin,tail	Salmonella_phage(45.45%)	11	NA	NA
ATU59924.1|1677673_1680040_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	NA	Q9MBL9	Phage_Gifsy-2	88.7	2.9e-72
ATU62916.1|1680368_1681358_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	6.0e-189
ATU59925.1|1681372_1681741_+	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
ATU59926.1|1681769_1683101_-	NTPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
ATU59927.1|1683397_1683727_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
ATU59928.1|1684319_1685561_+	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
ATU59929.1|1685563_1686091_+|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
ATU59930.1|1686468_1686912_+|tail	tail assembly chaperone	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
ATU59931.1|1686965_1688795_-	acyltransferase	NA	C6ZR20	Salmonella_phage	29.6	3.0e-61
ATU59932.1|1689142_1689433_-	DinI family protein	NA	S4TND2	Salmonella_phage	83.3	4.7e-25
ATU59933.1|1689460_1689964_+	LexA family transcriptional regulator	NA	Q1MVE7	Enterobacteria_phage	71.3	7.3e-50
>prophage 3
CP024619	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 chromosome, complete genome	4835517	1762041	1771212	4835517	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
ATU60001.1|1762041_1762989_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
ATU60002.1|1762972_1763704_+	ABC transporter permease	NA	NA	NA	NA	NA
ATU60003.1|1763684_1763792_-	hypothetical protein	NA	NA	NA	NA	NA
ATU60004.1|1763851_1764583_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
ATU60005.1|1764805_1766491_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
ATU60006.1|1766487_1767207_+	DNA-binding response regulator	NA	NA	NA	NA	NA
ATU60007.1|1767253_1767721_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
ATU60008.1|1767777_1768308_-	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
ATU60009.1|1768479_1768938_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
ATU60010.1|1769178_1771212_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 4
CP024619	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 chromosome, complete genome	4835517	1839520	1850026	4835517		Enterobacteria_phage(37.5%)	10	NA	NA
ATU60066.1|1839520_1840924_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	27.1	2.3e-21
ATU60067.1|1841101_1841995_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
ATU60068.1|1842371_1843457_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
ATU60069.1|1843456_1844356_+	NAD(P)-dependent oxidoreductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
ATU62920.1|1844403_1845282_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	9.3e-109
ATU60070.1|1845282_1845834_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.2e-52
ATU60071.1|1845839_1846832_+	protein RfbI	NA	NA	NA	NA	NA
ATU60072.1|1846828_1847602_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
ATU60073.1|1847606_1848686_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
ATU60074.1|1848712_1850026_+	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 5
CP024619	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 chromosome, complete genome	4835517	1876866	1908262	4835517	holin,terminase	Salmonella_phage(58.33%)	46	NA	NA
ATU60098.1|1876866_1878048_+	DUF4102 domain-containing protein	NA	A0A0M4QX09	Salmonella_phage	99.5	1.3e-227
ATU60099.1|1878028_1878235_-	AlpA family transcriptional regulator	NA	A0A0M4RTZ2	Salmonella_phage	98.5	3.1e-31
ATU62922.1|1878411_1878651_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
ATU60100.1|1878656_1879526_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	94.5	3.7e-158
ATU60101.1|1879522_1880203_-	exonuclease	NA	A0A0M3ULE0	Salmonella_phage	98.7	3.9e-131
ATU60102.1|1880199_1880985_-	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.2	1.4e-148
ATU60103.1|1880990_1881287_-	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	99.0	5.2e-48
ATU60104.1|1881367_1881517_-	host cell division inhibitory peptide Kil	NA	NA	NA	NA	NA
ATU60105.1|1881509_1881782_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99180.1|1881778_1881868_-	hypothetical protein	NA	NA	NA	NA	NA
ATU60106.1|1882156_1882561_-	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
ATU60107.1|1882690_1882927_+	Cro/Cl family transcriptional regulator	NA	H6WRX5	Salmonella_phage	100.0	1.8e-38
ATU60108.1|1882892_1883267_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	1.5e-63
ATU60109.1|1883358_1884195_+	replication protein	NA	K7PGT1	Enterobacteria_phage	47.4	7.6e-52
ATU60110.1|1884191_1884887_+	phage replication protein	NA	G8C7U6	Escherichia_phage	45.9	2.5e-56
ATU60111.1|1884900_1885158_+	DUF4752 family protein	NA	T1S9K2	Salmonella_phage	90.6	4.7e-37
ATU60112.1|1885154_1885769_+	hypothetical protein	NA	M1F3E2	Salmonella_phage	65.8	1.7e-72
ATU60113.1|1885765_1886239_+	ead/Ea22-like family protein	NA	A0A1R3Y5T1	Salmonella_virus	71.2	5.6e-36
ATU60114.1|1887143_1887701_+	DUF551 domain-containing protein	NA	A0A220NQT9	Salmonella_phage	92.8	1.7e-95
ATU60115.1|1887799_1888066_+	hypothetical protein	NA	S4TNF2	Salmonella_phage	100.0	1.5e-46
ATU60116.1|1888221_1888461_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
ATU60117.1|1888450_1888756_+	hypothetical protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
ATU60118.1|1888795_1889398_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
ATU60119.1|1889397_1889604_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
ATU60120.1|1889606_1890218_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	9.3e-92
ATU60121.1|1890214_1890355_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
ATU60122.1|1890351_1891041_+	antiterminator	NA	I6PDF8	Cronobacter_phage	50.2	5.3e-59
ATU60123.1|1891235_1891583_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	80.4	9.8e-46
ATU60124.1|1891585_1892212_+	glycoside hydrolase family 19 protein	NA	Q858F0	Salmonella_phage	80.2	2.1e-94
ATU60125.1|1892208_1892757_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
ATU60126.2|1892783_1893341_-	hypothetical protein	NA	NA	NA	NA	NA
ATU60127.1|1893428_1894181_+	hypothetical protein	NA	A0A1I9KFG9	Aeromonas_phage	34.1	1.6e-16
ATU60128.1|1894182_1895514_+|terminase	terminase	terminase	A0A0U2JTW9	Escherichia_phage	59.7	6.4e-154
ATU60129.1|1895525_1896947_+	DUF1073 domain-containing protein	NA	A0A0U2S5X9	Escherichia_phage	37.7	3.1e-90
ATU60130.1|1896943_1897768_+	hypothetical protein	NA	A0A0U2I1R8	Escherichia_phage	42.7	1.4e-53
ATU60131.1|1897780_1899400_+	NUDIX hydrolase	NA	NA	NA	NA	NA
ATU60132.1|1899415_1900276_+	hypothetical protein	NA	NA	NA	NA	NA
ATU60133.1|1900292_1901324_+	DUF2184 domain-containing protein	NA	A0A0U2QQI2	Escherichia_phage	46.9	7.1e-76
ATU60134.1|1901392_1901875_+	hypothetical protein	NA	A0A0U2SAX6	Escherichia_phage	36.1	1.4e-10
ATU60135.1|1901871_1902300_+	hypothetical protein	NA	A0A0U2S646	Escherichia_phage	39.1	7.9e-21
ATU60136.1|1902296_1902731_+	hypothetical protein	NA	NA	NA	NA	NA
ATU60137.1|1902714_1903656_+	hypothetical protein	NA	A0A0U2SH76	Escherichia_phage	37.1	8.5e-52
ATU60138.1|1903661_1905056_+	hypothetical protein	NA	A0A0U2KD19	Escherichia_phage	37.0	9.3e-71
ATU60139.1|1905059_1905497_+	hypothetical protein	NA	NA	NA	NA	NA
ATU60140.1|1905496_1906084_+	hypothetical protein	NA	NA	NA	NA	NA
ATU60141.1|1906207_1908262_+	hypothetical protein	NA	A0A2R3UAN6	Myoviridae_environmental_samples	35.8	2.9e-20
>prophage 6
CP024619	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 chromosome, complete genome	4835517	1911331	1919079	4835517	tail	Salmonella_phage(50.0%)	9	NA	NA
ATU60147.1|1911331_1912558_+	hypothetical protein	NA	A0A0U2RJZ0	Escherichia_phage	63.4	1.1e-147
ATU60148.1|1912541_1913168_+	hypothetical protein	NA	A0A0U2RK03	Escherichia_phage	71.6	3.3e-92
ATU62923.1|1913845_1915216_+|tail	phage tail protein	tail	A0A192Y7M1	Salmonella_phage	82.7	3.8e-210
ATU60149.1|1915185_1915791_+|tail	tail fiber assembly protein	tail	Q8HAB3	Salmonella_phage	93.6	2.2e-101
ATU60150.1|1916029_1917163_-	acyltransferase	NA	A0A2H4JA46	uncultured_Caudovirales_phage	33.0	7.2e-37
ATU60151.1|1917214_1917589_+	DUF1353 domain-containing protein	NA	A0A0A8J9K3	Ralstonia_phage	35.0	9.0e-13
ATU62924.1|1918062_1918497_+	hypothetical protein	NA	NA	NA	NA	NA
ATU60152.1|1918605_1918797_+	DUF2767 family protein	NA	A0A0M4R5C3	Salmonella_phage	97.7	5.8e-16
ATU60153.1|1918812_1919079_-	hypothetical protein	NA	A0A0M3ULK3	Salmonella_phage	89.8	4.0e-39
>prophage 7
CP024619	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 chromosome, complete genome	4835517	2103412	2133638	4835517	integrase,tail,protease	Escherichia_phage(18.18%)	40	2107274:2107288	2125761:2125775
ATU60339.1|2103412_2103643_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
ATU60340.1|2103780_2104155_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
ATU60341.1|2104155_2105031_+	hypothetical protein	NA	NA	NA	NA	NA
ATU60342.1|2105047_2105401_+	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
ATU62935.1|2105458_2105578_+	hypothetical protein	NA	NA	NA	NA	NA
ATU62934.1|2105774_2106629_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	50.9	3.6e-73
ATU62936.1|2106688_2107183_-	RecE	NA	A0A0U2I1R6	Escherichia_phage	68.9	8.2e-22
2107274:2107288	attL	CAGACATTTGCCCGC	NA	NA	NA	NA
ATU60343.1|2107372_2107603_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
ATU60344.1|2107656_2108190_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	48.3	1.4e-11
ATU60345.1|2108446_2108614_-	lytic enzyme	NA	NA	NA	NA	NA
ATU60346.1|2108678_2108867_-	hypothetical protein	NA	NA	NA	NA	NA
ATU60347.1|2109339_2110221_+|tail	phage tail protein	tail	A0A0M4RTP2	Salmonella_phage	76.0	2.2e-65
ATU60348.1|2110317_2110518_-	phage virulence factor	NA	NA	NA	NA	NA
ATU60349.1|2110708_2110825_-|tail	phage tail protein	tail	NA	NA	NA	NA
ATU60350.1|2111087_2111213_+	arsenic transporter	NA	NA	NA	NA	NA
ATU60351.1|2111341_2111608_+	hypothetical protein	NA	NA	NA	NA	NA
ATU60352.1|2112360_2112975_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
ATU60353.1|2112984_2113143_-	hypothetical protein	NA	NA	NA	NA	NA
ATU60354.1|2113275_2114190_-	protein PagO	NA	NA	NA	NA	NA
ATU62937.1|2114807_2115008_+	hypothetical protein	NA	NA	NA	NA	NA
ATU60355.1|2115298_2115556_+	hypothetical protein	NA	NA	NA	NA	NA
ATU60356.1|2115493_2115862_-|integrase	integrase	integrase	K7PHK0	Enterobacteria_phage	39.8	5.4e-18
ATU60357.1|2117325_2117466_-	hypothetical protein	NA	NA	NA	NA	NA
ATU60358.1|2117631_2117901_-	hypothetical protein	NA	Q6UAV5	Klebsiella_phage	39.0	1.5e-06
ATU60359.1|2117947_2118142_+	hypothetical protein	NA	NA	NA	NA	NA
ATU60360.1|2118270_2118690_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
ATU60361.1|2119077_2119554_-	hypothetical protein	NA	NA	NA	NA	NA
ATU60362.1|2119883_2120279_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	9.2e-16
ATU60363.1|2120962_2121685_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
ATU60364.1|2121969_2122134_+	hypothetical protein	NA	NA	NA	NA	NA
ATU60365.1|2122357_2123008_+	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	51.4	3.2e-58
ATU60366.1|2123026_2123218_-	DUF1482 family protein	NA	NA	NA	NA	NA
ATU60367.1|2123328_2123568_-	DUF1480 family protein	NA	NA	NA	NA	NA
ATU62938.1|2123682_2125122_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
ATU60368.1|2125199_2127839_-	MCE family protein	NA	NA	NA	NA	NA
2125761:2125775	attR	GCGGGCAAATGTCTG	NA	NA	NA	NA
ATU60369.1|2127801_2129085_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
ATU60370.1|2129126_2129711_+	GAF domain-containing protein	NA	NA	NA	NA	NA
ATU60371.1|2129808_2130495_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
ATU60372.1|2130514_2132563_+|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
ATU60373.1|2132756_2133638_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 8
CP024619	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 chromosome, complete genome	4835517	2897933	2983510	4835517	tRNA,portal,protease,lysis,holin,tail,terminase	Salmonella_phage(46.43%)	95	NA	NA
ATU61131.1|2897933_2898614_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
ATU61132.1|2898959_2899169_-	hypothetical protein	NA	NA	NA	NA	NA
ATU61133.1|2899234_2899894_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
ATU61134.1|2899980_2900310_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
ATU61135.1|2900306_2900588_-	acylphosphatase	NA	NA	NA	NA	NA
ATU61136.1|2900636_2901416_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
ATU61137.1|2901441_2901990_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
ATU61138.1|2902204_2903416_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
ATU61139.1|2903473_2903791_+	heat-shock protein HspQ	NA	NA	NA	NA	NA
ATU61140.1|2903835_2904252_-	CoA-binding protein	NA	NA	NA	NA	NA
ATU61141.1|2904422_2905085_+	DUF2057 family protein	NA	NA	NA	NA	NA
ATU61142.1|2905179_2905638_+	methylglyoxal synthase	NA	NA	NA	NA	NA
ATU61143.1|2905673_2907728_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
ATU61144.1|2907851_2908298_+	YccF domain-containing protein	NA	NA	NA	NA	NA
ATU61145.1|2908316_2910470_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
ATU61146.1|2910456_2911062_-	DNA transformation protein	NA	NA	NA	NA	NA
ATU61147.1|2911278_2911788_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
ATU61148.1|2912144_2913197_+	outer membrane protein A	NA	NA	NA	NA	NA
ATU61149.1|2913268_2913721_-	macrodomain Ter protein	NA	NA	NA	NA	NA
ATU61150.1|2913906_2915667_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
ATU61151.1|2915735_2916254_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
ATU61152.1|2916353_2916521_-	ribosome modulation factor	NA	NA	NA	NA	NA
ATU61153.1|2916776_2917340_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
ATU61154.1|2917336_2918977_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
ATU61155.1|2918981_2920235_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
ATU61156.1|2920249_2922157_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
ATU61157.1|2922169_2924278_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
ATU61158.1|2924376_2925486_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
ATU61159.1|2925482_2926025_-	cell division protein ZapC	NA	NA	NA	NA	NA
ATU61160.1|2926190_2927201_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
ATU61161.1|2927408_2930021_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
ATU61162.1|2930447_2930639_+	DinI family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
ATU61163.1|2930909_2931596_+	virulence protein	NA	NA	NA	NA	NA
ATU61164.1|2931955_2932582_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
ATU61165.1|2933229_2934198_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	97.2	5.9e-189
ATU61166.1|2934423_2934675_+|tail	phage tail protein	tail	A0A1B0VCD0	Salmonella_phage	63.4	3.3e-19
ATU61167.1|2935318_2935837_-|tail	phage tail protein	tail	A0A0U2QV64	Escherichia_phage	51.4	2.5e-45
ATU61168.1|2935851_2938530_-	shikimate transporter	NA	A0A1B0VFW4	Salmonella_phage	62.8	1.3e-145
ATU61169.1|2938583_2938826_-	hypothetical protein	NA	NA	NA	NA	NA
ATU61170.1|2938864_2939740_-	DUF1983 domain-containing protein	NA	K7PKJ2	Enterobacteria_phage	81.4	1.4e-51
ATU61171.1|2942286_2942991_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	62.6	2.0e-66
ATU61172.1|2942888_2943626_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	75.6	5.2e-113
ATU61173.1|2943635_2944331_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.0e-89
ATU61174.1|2944420_2944954_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
ATU61175.1|2945043_2945568_-	Ail/OmpX	NA	A0A1B0VBR9	Salmonella_phage	35.3	1.8e-19
ATU61176.1|2945666_2945999_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	2.6e-35
ATU62974.1|2945995_2948983_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.0	2.5e-262
ATU61177.1|2949062_2949392_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
ATU61178.1|2949388_2949787_-|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
ATU61179.1|2949832_2950582_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
ATU61180.1|2950593_2950995_-|tail	phage tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	2.0e-42
ATU61181.1|2950991_2951558_-|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	95.7	2.1e-13
ATU61182.1|2951538_2951838_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
ATU61183.1|2951830_2952154_-	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
ATU62976.1|2952244_2954323_-|protease	Clp protease ClpP	protease	A0A291AWT6	Escherichia_phage	69.4	1.4e-264
ATU62975.1|2954246_2955764_-|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	64.7	7.5e-175
ATU61184.1|2955790_2955997_-	primosomal replication protein PriB/PriC domain protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
ATU61185.1|2955993_2958132_-|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.6	2.0e-290
ATU61186.1|2958088_2958622_-	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
ATU62978.1|2958829_2959309_-|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
ATU61187.1|2959326_2959779_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	96.6	5.1e-79
ATU62977.1|2959762_2960092_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
ATU61188.1|2960367_2961054_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
ATU61189.1|2961414_2961864_+	hypothetical protein	NA	NA	NA	NA	NA
ATU61190.1|2961999_2962125_-	hypothetical protein	NA	NA	NA	NA	NA
ATU61191.1|2962298_2962616_-	hypothetical protein	NA	NA	NA	NA	NA
ATU61192.1|2962682_2963480_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	1.2e-150
ATU61193.1|2963469_2963616_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
ATU61194.1|2963612_2964224_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	91.6	6.9e-79
ATU61195.1|2964226_2964433_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
ATU61196.1|2964432_2965035_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	98.5	8.3e-109
ATU61197.1|2965117_2965339_-	hypothetical protein	NA	NA	NA	NA	NA
ATU61198.1|2965450_2965684_-	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
ATU61199.1|2965975_2966266_-	hypothetical protein	NA	NA	NA	NA	NA
ATU61200.1|2966343_2966655_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
ATU61201.1|2966651_2966999_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
ATU61202.1|2967009_2967759_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
ATU61203.1|2967761_2968745_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
ATU61204.1|2968829_2969204_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
ATU61205.1|2969169_2969409_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
ATU61206.1|2969528_2969939_+	helix-turn-helix domain-containing protein	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
ATU61207.1|2969988_2970249_+	hypothetical protein	NA	NA	NA	NA	NA
ATU61208.1|2970241_2970400_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	1.2e-22
ATU61209.1|2970421_2970721_+	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	84.5	8.1e-49
ATU61210.1|2970847_2973733_+	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	97.3	0.0e+00
ATU61211.1|2973695_2974853_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
ATU61212.1|2974895_2975135_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
ATU61213.1|2975175_2975424_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
ATU61214.1|2975468_2976761_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	1.0e-252
ATU61215.1|2976955_2978158_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
ATU61216.1|2978235_2979672_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
ATU61217.1|2979916_2981131_-	PLP-dependent lyase/thiolase	NA	NA	NA	NA	NA
ATU61218.1|2981217_2981451_+	hypothetical protein	NA	NA	NA	NA	NA
ATU61219.1|2981447_2981909_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
ATU61220.1|2982109_2983510_+|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
>prophage 9
CP024619	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 chromosome, complete genome	4835517	3047649	3055669	4835517	transposase,protease	Enterobacteria_phage(16.67%)	7	NA	NA
ATU61269.1|3047649_3048904_+|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	5.4e-17
ATU61270.1|3049305_3051582_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
ATU61271.1|3051612_3051933_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
ATU61272.1|3052256_3052478_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
ATU61273.1|3052432_3052627_-	hypothetical protein	NA	NA	NA	NA	NA
ATU61274.1|3052607_3054554_-	macrolide ABC transporter permease/ATP-binding protein MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
ATU61275.1|3054550_3055669_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
>prophage 10
CP024619	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 chromosome, complete genome	4835517	4376897	4461897	4835517	plate,tRNA,transposase,tail	Burkholderia_phage(32.14%)	73	NA	NA
ATU62464.1|4376897_4378106_-|transposase	IS4-like element ISVsa5 family transposase	transposase	Q9E8P4	Bluetongue_virus	99.8	3.0e-235
ATU62465.1|4378634_4380701_-	peptidase domain-containing ABC transporter	NA	F2Y2R6	Organic_Lake_phycodnavirus	23.7	6.3e-15
ATU62466.1|4380740_4397420_-	Ig-like domain repeat protein	NA	NA	NA	NA	NA
ATU62467.1|4397436_4398714_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
ATU62468.1|4398710_4400030_-	TolC family protein	NA	NA	NA	NA	NA
ATU62469.1|4400019_4401408_-	hypothetical protein	NA	NA	NA	NA	NA
ATU62470.1|4401404_4402037_-	hypothetical protein	NA	NA	NA	NA	NA
ATU62471.1|4402870_4403062_+	hypothetical protein	NA	NA	NA	NA	NA
ATU62472.1|4403077_4403608_-	ssDNA-binding protein	NA	A0A0A0P1Q9	Enterobacteria_phage	88.9	3.9e-54
ATU62473.1|4403774_4403891_-	hypothetical protein	NA	NA	NA	NA	NA
ATU62474.1|4403855_4406681_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.7	0.0e+00
ATU62475.1|4406812_4407268_+	hypothetical protein	NA	NA	NA	NA	NA
ATU62476.1|4407254_4407593_+	hypothetical protein	NA	NA	NA	NA	NA
ATU62477.1|4407593_4407950_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
ATU62478.1|4407952_4408369_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
ATU62479.1|4408497_4409211_-	acid phosphatase AphA	NA	NA	NA	NA	NA
AXA99190.1|4409257_4409488_+	hypothetical protein	NA	NA	NA	NA	NA
ATU62480.1|4409397_4410591_-	aromatic amino acid transaminase	NA	NA	NA	NA	NA
ATU62481.1|4410776_4411856_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	28.8	3.4e-28
ATU62482.1|4411887_4413303_-	replicative DNA helicase	NA	A0A1B0VG30	Salmonella_phage	78.4	7.0e-199
ATU62483.1|4413367_4414351_+	quinone oxidoreductase	NA	NA	NA	NA	NA
ATU62484.1|4414525_4414768_-	envelope stress response protein PspG	NA	NA	NA	NA	NA
ATU62485.1|4414935_4415934_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
ATU62486.1|4416021_4417332_-	conjugal transfer protein	NA	NA	NA	NA	NA
ATU62487.1|4417578_4418094_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
ATU62488.1|4418193_4418403_-	CsbD family protein	NA	NA	NA	NA	NA
ATU63038.1|4418424_4418538_-	hypothetical protein	NA	NA	NA	NA	NA
ATU62489.1|4418534_4419860_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
ATU62490.1|4420038_4420647_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
ATU62491.1|4420755_4421124_-	diacylglycerol kinase	NA	NA	NA	NA	NA
ATU62492.1|4421294_4423715_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
ATU62493.1|4423813_4424686_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
ATU62494.1|4424699_4425197_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
ATU62495.1|4425377_4426295_-	maltose operon protein MalM	NA	NA	NA	NA	NA
ATU62496.1|4426458_4427817_-	maltoporin	NA	NA	NA	NA	NA
ATU62497.1|4427905_4429015_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
ATU62498.1|4429375_4430566_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
ATU62499.1|4430697_4432242_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
ATU62500.1|4432256_4433147_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
ATU62501.1|4433312_4433723_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
ATU62502.1|4433865_4435962_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
ATU62503.1|4435961_4436696_-	hypothetical protein	NA	NA	NA	NA	NA
ATU62504.1|4436692_4437331_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
ATU62505.1|4437394_4437637_-	hypothetical protein	NA	NA	NA	NA	NA
ATU62506.1|4438080_4439730_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
ATU62507.1|4440074_4441424_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
ATU62508.1|4441554_4441902_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
ATU62509.1|4442480_4442768_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	48.1	5.1e-16
ATU62510.1|4442770_4443376_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	60.4	6.5e-61
ATU62511.1|4443388_4443703_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
ATU62512.1|4443862_4444318_+	hypothetical protein	NA	NA	NA	NA	NA
ATU62513.1|4444314_4444512_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
ATU62514.1|4444501_4445929_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	2.3e-194
ATU62515.1|4445928_4446453_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
ATU62516.1|4446504_4446822_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
ATU62517.1|4446781_4446910_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
ATU62518.1|4447006_4449358_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.8	8.1e-67
ATU62519.1|4449357_4450311_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	51.5	7.9e-37
ATU62520.1|4450310_4450520_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
ATU62521.1|4450507_4451551_+	phage protein D	NA	Q6QIA2	Burkholderia_phage	45.1	3.2e-76
ATU62522.1|4451560_4452283_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	5.1e-12
ATU62523.1|4452291_4452531_+	hypothetical protein	NA	NA	NA	NA	NA
ATU62524.1|4452606_4452969_+	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
ATU62525.1|4452965_4453895_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	83.8	6.7e-150
ATU62526.1|4453894_4455442_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	1.5e-48
ATU62527.1|4455605_4455965_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
ATU62528.1|4455955_4457071_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	51.2	6.5e-99
ATU62529.1|4457063_4457696_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
ATU62530.1|4457698_4459357_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	5.2e-52
ATU62531.1|4459363_4459978_+	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
ATU62532.1|4459974_4460430_+	hypothetical protein	NA	NA	NA	NA	NA
ATU62533.1|4460681_4460972_+	hypothetical protein	NA	NA	NA	NA	NA
ATU62534.1|4461168_4461897_+	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	1.9e-35
>prophage 1
CP025339	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 plasmid p113k, complete sequence	112565	61729	105819	112565	integrase,transposase	Escherichia_phage(35.71%)	54	55610:55626	100069:100085
55610:55626	attL	TCATTGGCGTCCTGACT	NA	NA	NA	NA
AXA99295.1|61729_62632_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	53.8	9.0e-67
AXA99296.1|62628_63018_-	cobalamin biosynthesis protein CbiX	NA	NA	NA	NA	NA
AXA99297.1|63194_63461_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99298.1|63554_63989_-	post-segregation killing protein PndC	NA	NA	NA	NA	NA
AXA99299.1|64011_64257_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99300.1|64278_64578_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99301.1|64717_65608_-	DUF1472 domain-containing protein	NA	G9FHQ1	Rhodococcus_virus	27.3	4.3e-05
AXA99302.1|65817_66276_-	hypothetical protein	NA	A0A0N7KZV3	Escherichia_phage	56.6	9.0e-15
AXA99303.1|66272_66992_-	plasmid SOS inhibition protein A	NA	NA	NA	NA	NA
AXA99304.1|66988_67426_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA	NA
AXA99305.1|67477_69514_-	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	29.4	7.6e-21
AXA99306.1|69494_69755_-	DUF905 domain-containing protein	NA	A0A096XUX0	Cronobacter_phage	53.2	1.9e-06
AXA99307.1|69785_70313_-	single-stranded DNA-binding protein	NA	I3PGW4	Xanthomonas_phage	73.5	3.5e-47
AXA99308.1|70309_70516_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99309.1|70696_71011_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99310.1|71081_71273_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99311.1|71269_71692_-	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
AXA99312.1|71738_72164_-	antirestriction protein	NA	NA	NA	NA	NA
AXA99313.1|73397_73832_-	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
AXA99314.1|73845_74067_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99315.1|74067_74751_-	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.4	1.1e-29
AXA99316.1|75135_76107_-	DUF1281 domain-containing protein	NA	NA	NA	NA	NA
AXA99354.1|76075_76345_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99317.1|76455_76704_+	protein ImpC	NA	Q2A098	Sodalis_phage	48.0	1.9e-14
AXA99318.1|76700_77138_+	peptidase	NA	A0A1W6JNS2	Morganella_phage	48.4	8.3e-26
AXA99319.1|77336_78866_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
AXA99320.1|78865_80716_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99321.1|80712_82704_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99322.1|82705_83146_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99323.1|83401_84361_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99355.1|84362_85463_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99324.1|85898_86987_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99325.1|88578_89007_-	plasmid stability protein	NA	NA	NA	NA	NA
AXA99326.1|88975_89947_-	plasmid segregation protein parM	NA	A0A222YXF2	Escherichia_phage	42.9	7.4e-67
AXA99327.1|90175_90820_+	chromosome partitioning protein ParA	NA	A0A222YXS3	Escherichia_phage	43.0	1.9e-39
AXA99328.1|90813_91089_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
AXA99329.1|91226_92009_-|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	92.0	5.4e-52
AXA99330.1|92076_92685_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99331.1|92754_93105_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99332.1|93675_94257_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99333.1|94436_94772_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99334.1|94759_95407_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99335.1|95577_95862_-	korC	NA	NA	NA	NA	NA
AXA99336.1|95881_97015_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99337.1|97339_97537_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99338.1|97533_97824_-	korC	NA	NA	NA	NA	NA
AXA99339.1|97905_98610_-|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
AXA99340.1|101133_102270_-	DUF3883 domain-containing protein	NA	NA	NA	NA	NA
100069:100085	attR	TCATTGGCGTCCTGACT	NA	NA	NA	NA
AXA99341.1|102320_102566_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99342.1|102571_102763_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99343.1|103244_103787_-	tunicamycin resistance protein	NA	NA	NA	NA	NA
AXA99344.1|103799_104660_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA	NA
AXA99345.1|104778_105483_+|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
AXA99346.1|105516_105819_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 1
CP025340	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 plasmid p220k, complete sequence	220023	0	8651	220023		Salmonella_phage(75.0%)	7	NA	NA
AXA99357.1|1870_3034_-	DNA-binding protein	NA	A0A1P8DTT7	Salmonella_phage	32.1	1.3e-17
AXA99358.1|3402_4215_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1C9II58	Salmonella_phage	38.1	1.9e-44
AXA99359.1|4223_5078_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99360.1|5312_6029_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99361.1|6025_6226_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99362.1|6243_7299_-	hypothetical protein	NA	A0A2P9HXK7	Yersinia_phage	31.2	1.1e-12
AXA99363.1|7775_8651_+	RepB family plasmid replication initiator protein	NA	J9Q7H0	Salmonella_phage	43.0	2.1e-60
>prophage 2
CP025340	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 plasmid p220k, complete sequence	220023	24497	25502	220023		Aeromonas_phage(100.0%)	1	NA	NA
AXA99376.1|24497_25502_+	peptide transporter	NA	A0A1I9KFW9	Aeromonas_phage	33.8	2.7e-11
>prophage 3
CP025340	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 plasmid p220k, complete sequence	220023	28607	29645	220023		Enterobacteria_phage(100.0%)	1	NA	NA
AXA99381.1|28607_29645_+	stbA family protein	NA	A0A0A7NPX4	Enterobacteria_phage	35.0	3.6e-43
>prophage 4
CP025340	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 plasmid p220k, complete sequence	220023	44328	46113	220023		Bacillus_phage(100.0%)	1	NA	NA
AXA99391.1|44328_46113_+	ATP-dependent helicase	NA	S5M596	Bacillus_phage	26.7	3.5e-22
>prophage 5
CP025340	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 plasmid p220k, complete sequence	220023	65852	125127	220023	transposase,integrase	Escherichia_phage(17.65%)	60	80921:80935	110405:110419
AXA99414.1|65852_67028_-	recombinase	NA	A0A077SLE7	Escherichia_phage	26.9	4.2e-16
AXA99415.1|67228_68437_-|transposase	IS4-like element ISVsa5 family transposase	transposase	Q9E8P4	Bluetongue_virus	99.8	3.0e-235
AXA99416.1|68509_68749_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99417.1|69109_70192_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99418.1|70358_71858_-	kinase	NA	NA	NA	NA	NA
AXA99419.1|71883_73521_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA	NA
AXA99420.1|73520_74561_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AXA99421.1|74646_75285_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AXA99422.1|75284_75926_-	tellurium resistance protein TerX	NA	NA	NA	NA	NA
AXA99423.1|75948_76587_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AXA99424.1|77049_77517_-	tellurium resistance protein TerW	NA	NA	NA	NA	NA
AXA99425.1|77534_78743_-	DUF4236 domain-containing protein	NA	NA	NA	NA	NA
AXA99426.1|78753_79710_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
AXA99427.1|79709_80789_-	hypothetical protein	NA	A0A172Q0S8	Acinetobacter_phage	34.1	2.8e-38
AXA99428.1|80790_81564_-	hypothetical protein	NA	NA	NA	NA	NA
80921:80935	attL	ACTCCGCGTTCAGCC	NA	NA	NA	NA
AXA99429.1|81556_82699_-	adenine/guanine phosphoribosyltransferase	NA	A0A172Q0Y1	Acinetobacter_phage	35.4	1.7e-30
AXA99430.1|82708_83767_-	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA	NA
AXA99431.1|84090_84672_+	tellurium resistance protein TerZ	NA	K4JRX3	Caulobacter_phage	30.0	6.3e-13
AXA99432.1|84671_85829_+	tellurium resistance protein TerA	NA	NA	NA	NA	NA
AXA99433.1|85851_86307_+	Tellurite resistance protein TerB	NA	NA	NA	NA	NA
AXA99434.1|86329_87370_+	tellurium resistance protein TerC	NA	K7QKE8	Escherichia_phage	48.0	2.2e-77
AXA99435.1|87418_87997_+	chemical-damaging agent resistance protein C	NA	A0A2P1N0L4	Streptomyces_phage	40.0	3.3e-06
AXA99436.1|88064_88640_+	TerD family protein	NA	K4JRX3	Caulobacter_phage	41.6	8.7e-31
AXA99437.1|89068_90310_+	tellurium resistance protein TerF	NA	NA	NA	NA	NA
AXA99438.1|90872_91154_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99439.1|91203_91395_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99440.1|91486_91858_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99441.1|92200_92593_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99442.1|92571_92883_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99562.1|93196_93490_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXA99443.1|93494_94820_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AXA99444.1|94880_95087_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99445.1|95188_95479_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99446.1|95520_96357_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
AXA99563.1|96356_97160_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA	NA
AXA99447.1|97391_97742_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99448.1|97982_98624_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AXA99449.1|100006_100870_+	SDR family NAD(P)-dependent oxidoreductase	NA	W8CYX9	Bacillus_phage	31.0	2.5e-05
AXA99450.1|100907_101153_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99451.1|101621_102413_+	sulfonamide-resistant dihydropteroate synthase Sul3	NA	A0A0B5J4J5	Pandoravirus	26.5	1.2e-14
AXA99452.1|103267_103453_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99453.1|103592_103925_-	quaternary ammonium compound efflux SMR transporter QacL	NA	NA	NA	NA	NA
AXA99454.1|104094_104886_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA	NA
AXA99455.1|104978_106238_-	chloramphenicol efflux MFS transporter CmlA1	NA	S4TR35	Salmonella_phage	31.7	4.8e-26
AXA99456.1|106499_107291_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
AXA99457.1|107348_107957_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AXA99564.1|108052_108895_-	alpha/beta fold putative hydrolase EstX	NA	NA	NA	NA	NA
AXA99458.1|109061_109928_+|integrase	integrase/recombinase	integrase	A0A1P8DJJ6	Virus_Rctr41k	39.4	1.3e-38
AXA99459.1|109818_110523_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	3.1e-139
110405:110419	attR	ACTCCGCGTTCAGCC	NA	NA	NA	NA
AXA99460.1|111652_112495_+|transposase	transposase	transposase	NA	NA	NA	NA
AXA99461.1|112481_114605_+|transposase	transposase	transposase	NA	NA	NA	NA
AXA99462.1|114604_116053_+	ATP-binding protein	NA	NA	NA	NA	NA
AXA99463.1|116093_117650_+|transposase	transposase	transposase	NA	NA	NA	NA
AXA99464.1|117661_118588_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99465.1|118940_119240_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXA99466.1|119803_121630_+	OLD family endonuclease	NA	E5E3R2	Burkholderia_phage	22.8	4.7e-14
AXA99467.1|121798_122149_-	DUF305 domain-containing protein	NA	A0A218MND9	uncultured_virus	50.5	1.8e-18
AXA99468.1|122296_122728_-	silver-binding protein SilE	NA	NA	NA	NA	NA
AXA99469.1|122972_124454_-	Cu(+)/Ag(+) sensor histidine kinase	NA	W8CYF6	Bacillus_phage	30.1	1.8e-27
AXA99470.1|124446_125127_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.0	2.7e-31
>prophage 6
CP025340	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 plasmid p220k, complete sequence	220023	128499	135757	220023		Leptospira_phage(33.33%)	5	NA	NA
AXA99474.1|128499_131646_+	CusA/CzcA family heavy metal efflux RND transporter	NA	S5VTK5	Leptospira_phage	22.4	2.1e-62
AXA99475.1|131732_132173_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99476.1|132300_134748_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.4	2.9e-83
AXA99477.1|134788_134986_+	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
AXA99478.1|135019_135757_-	peptidase	NA	A0A2H4JAF5	uncultured_Caudovirales_phage	31.9	1.3e-10
>prophage 7
CP025340	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 plasmid p220k, complete sequence	220023	140851	142929	220023		Bacillus_phage(100.0%)	2	NA	NA
AXA99484.1|140851_141532_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	34.4	8.7e-30
AXA99485.1|141528_142929_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	26.6	5.4e-18
>prophage 8
CP025340	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 plasmid p220k, complete sequence	220023	147828	149986	220023		Burkholderia_phage(50.0%)	2	NA	NA
AXA99491.1|147828_149256_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	52.3	3.4e-100
AXA99492.1|149470_149986_+	thermonuclease family protein	NA	V5UN65	Mycobacterium_phage	31.8	5.4e-08
>prophage 9
CP025340	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 plasmid p220k, complete sequence	220023	154671	180127	220023	transposase,integrase	Escherichia_phage(45.45%)	27	157212:157227	164648:164663
AXA99499.1|154671_157638_-|transposase	Tn3-like element TnAs1 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	99.9	0.0e+00
157212:157227	attL	CGGCCAGCAGCAAGCC	NA	NA	NA	NA
AXA99500.1|157641_158202_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	100.0	1.1e-59
AXA99501.1|158377_158992_-	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
AXA99502.1|158930_159944_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
AXA99503.1|160088_160586_+	trimethoprim-resistant dihydrofolate reductase DfrA12	NA	A0A0A0PL85	Bacillus_phage	40.9	7.5e-23
AXA99504.1|160697_160988_+	DUF1010 domain-containing protein	NA	NA	NA	NA	NA
AXA99505.1|160993_161785_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
AXA99506.1|162289_163129_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
AXA99507.1|163058_163238_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99508.1|163256_163460_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99509.1|164831_165137_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
164648:164663	attR	GGCTTGCTGCTGGCCG	NA	NA	NA	NA
AXA99510.1|165152_165335_-	resolvase	NA	NA	NA	NA	NA
AXA99568.1|165363_166128_+|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
AXA99511.1|166318_166675_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99512.1|166620_167205_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXA99513.1|167204_168443_-	MFS transporter	NA	NA	NA	NA	NA
AXA99514.1|168439_169345_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
AXA99515.1|169466_170171_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	3.1e-139
AXA99516.1|170284_171061_+	aminoglycoside N-acetyltransferase AAC(3)-IV	NA	NA	NA	NA	NA
AXA99517.1|171081_171303_+	hypothetical protein	NA	NA	NA	NA	NA
AXA99518.1|171289_172315_+	aminoglycoside O-phosphotransferase APH(4)-Ia	NA	NA	NA	NA	NA
AXA99519.1|172736_173489_-|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	44.7	2.4e-41
AXA99520.1|175070_176345_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXA99521.1|176419_177193_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	55.4	5.5e-73
AXA99522.1|177192_178218_-|transposase	IS21-like element ISEc57 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	44.1	6.6e-74
AXA99523.1|178579_178885_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXA99524.1|178912_180127_-	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	5.5e-19
>prophage 10
CP025340	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 plasmid p220k, complete sequence	220023	184552	188709	220023	transposase	Cronobacter_phage(66.67%)	5	NA	NA
AXA99530.1|184552_185257_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	3.1e-139
AXA99531.1|185714_186071_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99532.1|186220_186838_-	hypothetical protein	NA	NA	NA	NA	NA
AXA99533.1|187031_187466_+	peptidase	NA	F1C5A6	Cronobacter_phage	48.8	2.5e-22
AXA99534.1|187449_188709_+	translesion error-prone DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	44.3	2.6e-96
>prophage 11
CP025340	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 plasmid p220k, complete sequence	220023	193548	194257	220023		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
AXA99540.1|193548_193830_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	62.4	2.9e-24
AXA99569.1|194068_194257_-	hypothetical protein	NA	A0A077SL39	Escherichia_phage	96.7	8.8e-09
>prophage 12
CP025340	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 plasmid p220k, complete sequence	220023	197302	199108	220023	transposase	Hepacivirus(50.0%)	2	NA	NA
AXA99543.1|197302_198097_+	aminoglycoside O-phosphotransferase APH(3')-IIa	NA	Q75ZG1	Hepacivirus	100.0	9.5e-153
AXA99544.1|198403_199108_+|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
>prophage 13
CP025340	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 plasmid p220k, complete sequence	220023	204419	208418	220023	transposase	Escherichia_phage(75.0%)	5	NA	NA
AXA99548.1|204419_205124_+|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
AXA99549.1|205234_205627_-	NimC/NimA family protein	NA	NA	NA	NA	NA
AXA99550.1|206778_207483_-|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
AXA99551.1|207483_207786_+	hypothetical protein	NA	M9UXL5	Escherichia_phage	46.5	2.9e-09
AXA99552.1|207806_208418_+	hypothetical protein	NA	A0A248SKW5	Klebsiella_phage	71.1	1.2e-09
>prophage 14
CP025340	Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 plasmid p220k, complete sequence	220023	213300	214356	220023		Salmonella_phage(100.0%)	1	NA	NA
AXA99570.1|213300_214356_-	RepB family plasmid replication initiator protein	NA	J9Q7H0	Salmonella_phage	50.6	1.4e-82
