assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002849935.1_ASM284993v1	CP015496	Lactobacillus helveticus strain FAM8105 chromosome, complete genome	1	601821-603718	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas14k	cas14j,cas3,csa3,cas2,cas14k,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,Cas14u_CAS-V	Type I-C,Type I-U, Type I-U?	GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	27,27,28	28	TypeI-C,TypeI-U,TypeV,TypeI-U?	cas14j,cas3,csa3,cas2,cas14k,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,Cas14u_CAS-V	NA,NA|177aa|down_7|CP015496.1_614199_614730_+	NA|326aa|up_9|CP015496.1_587480_588458_+	pfam17312, Helveticin_J, Bacteriocin helveticin-J	NA|105aa|up_8|CP015496.1_588864_589179_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|294aa|up_7|CP015496.1_589196_590078_+	pfam01145, Band_7, SPFH domain / Band 7 family	cas3|845aa|up_6|CP015496.1_593552_596087_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|248aa|up_5|CP015496.1_596101_596845_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|658aa|up_4|CP015496.1_596844_598818_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|284aa|up_3|CP015496.1_598820_599672_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|219aa|up_2|CP015496.1_599674_600331_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|up_1|CP015496.1_600327_601359_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|CP015496.1_601368_601659_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|888aa|down_0|CP015496.1_604316_606980_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|277aa|down_1|CP015496.1_606988_607819_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|201aa|down_2|CP015496.1_607815_608418_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|156aa|down_3|CP015496.1_608420_608888_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|444aa|down_4|CP015496.1_608890_610222_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|303aa|down_5|CP015496.1_610253_611162_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|645aa|down_6|CP015496.1_611452_613387_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|177aa|down_7|CP015496.1_614199_614730_+	NA	NA|203aa|down_8|CP015496.1_614920_615529_+	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	cas14k|442aa|down_9|CP015496.1_615558_616884_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCA_002849935.1_ASM284993v1	CP015496	Lactobacillus helveticus strain FAM8105 chromosome, complete genome	2	752689-752779	2	CRISPRCasFinder	no		cas14j,cas3,csa3,cas2,cas14k,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,Cas14u_CAS-V	Orphan	GTATTCTCCACGTATGTGGAGGTGATCCTA	30	0	0	NA	NA	I-B,III-A,III-B	1	1	Orphan	cas14j,cas3,csa3,cas2,cas14k,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,Cas14u_CAS-V	NA|169aa|up_9|CP015496.1_734068_734575_-,NA|205aa|up_3|CP015496.1_745344_745959_+,NA|81aa|down_0|CP015496.1_753833_754076_-,NA|130aa|down_1|CP015496.1_754097_754487_-,NA|99aa|down_6|CP015496.1_758443_758740_+	NA|169aa|up_9|CP015496.1_734068_734575_-	NA	NA|393aa|up_8|CP015496.1_734849_736028_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|492aa|up_7|CP015496.1_736111_737587_+	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|426aa|up_6|CP015496.1_737647_738925_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1071aa|up_5|CP015496.1_739187_742400_+	PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional	NA|485aa|up_4|CP015496.1_742420_743875_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|205aa|up_3|CP015496.1_745344_745959_+	NA	NA|415aa|up_2|CP015496.1_746041_747286_+	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|395aa|up_1|CP015496.1_747525_748710_+	pfam03217, SLAP, SLAP domain	NA|207aa|up_0|CP015496.1_750378_750999_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|81aa|down_0|CP015496.1_753833_754076_-	NA	NA|130aa|down_1|CP015496.1_754097_754487_-	NA	NA|109aa|down_2|CP015496.1_754641_754968_-	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|295aa|down_3|CP015496.1_754969_755854_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|221aa|down_4|CP015496.1_755868_756531_-	TIGR00719, Probable_L-serine_dehydratase_beta_chain, L-serine dehydratase, iron-sulfur-dependent, beta subunit	NA|393aa|down_5|CP015496.1_756679_757858_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|99aa|down_6|CP015496.1_758443_758740_+	NA	NA|412aa|down_7|CP015496.1_758874_760110_+	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|874aa|down_8|CP015496.1_760166_762788_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|93aa|down_9|CP015496.1_764720_764999_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family
GCA_002849935.1_ASM284993v1	CP015496	Lactobacillus helveticus strain FAM8105 chromosome, complete genome	3	1706457-1706636	2	PILER-CR	no	cas14j,cas14k	cas14j,cas3,csa3,cas2,cas14k,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,Cas14u_CAS-V	Unclear	ATGTGGGATTTGAACCCACGC	21	0	0	NA	NA	NA	2	2	TypeV	cas14j,cas3,csa3,cas2,cas14k,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,Cas14u_CAS-V	NA|264aa|up_7|CP015496.1_1694495_1695287_-,NA|143aa|down_4|CP015496.1_1712493_1712922_-	NA|273aa|up_9|CP015496.1_1692953_1693772_+	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold	NA|223aa|up_8|CP015496.1_1693814_1694483_-	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|264aa|up_7|CP015496.1_1694495_1695287_-	NA	NA|541aa|up_6|CP015496.1_1695443_1697066_-	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|361aa|up_5|CP015496.1_1697170_1698253_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|402aa|up_4|CP015496.1_1698379_1699585_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|490aa|up_3|CP015496.1_1699608_1701078_-	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|177aa|up_2|CP015496.1_1701368_1701899_+	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|443aa|up_1|CP015496.1_1701911_1703240_+	PRK10720, PRK10720, uracil transporter; Provisional	cas14j|397aa|up_0|CP015496.1_1704162_1705353_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas14k|442aa|down_0|CP015496.1_1707038_1708364_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|203aa|down_1|CP015496.1_1708393_1709002_-	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	NA|167aa|down_2|CP015496.1_1709104_1709605_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|469aa|down_3|CP015496.1_1709815_1711222_-	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	NA|143aa|down_4|CP015496.1_1712493_1712922_-	NA	NA|260aa|down_5|CP015496.1_1714862_1715642_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|186aa|down_6|CP015496.1_1715759_1716317_-	pfam07563, DUF1541, Protein of unknown function (DUF1541)	NA|84aa|down_7|CP015496.1_1716498_1716750_-	pfam04024, PspC, PspC domain	NA|116aa|down_8|CP015496.1_1716795_1717143_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|154aa|down_9|CP015496.1_1717216_1717678_-	pfam13349, DUF4097, Putative adhesin
