assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002850235.1_ASM285023v1	CP019600	Brachyspira hyodysenteriae strain BH718 chromosome, complete genome	5	1598348-1598465	4	CRISPRCasFinder	no		WYL,DinG,cas4,csa3,RT	Orphan	AATAAAGATCCTCTAAATCCTTATTATTC	29	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,cas4,csa3,RT	NA|107aa|up_8|CP019600.1_1587689_1588010_+,NA|142aa|down_7|CP019600.1_1608286_1608712_+,NA|180aa|down_8|CP019600.1_1608799_1609339_-	NA|111aa|up_9|CP019600.1_1587342_1587675_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|107aa|up_8|CP019600.1_1587689_1588010_+	NA	NA|713aa|up_7|CP019600.1_1588018_1590157_+	sd00006, TPR, Tetratricopeptide repeat	NA|70aa|up_6|CP019600.1_1590214_1590424_+	TIGR03980, conserved_hypothetical_protein, hybrid cluster protein-associated redox disulfide domain	NA|249aa|up_5|CP019600.1_1590486_1591233_-	pfam11306, DUF3108, Protein of unknown function (DUF3108)	NA|290aa|up_4|CP019600.1_1591765_1592635_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|373aa|up_3|CP019600.1_1592665_1593784_+	pfam07728, AAA_5, AAA domain (dynein-related subfamily)	NA|387aa|up_2|CP019600.1_1594114_1595275_+	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein	NA|381aa|up_1|CP019600.1_1595645_1596788_+	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein	NA|362aa|up_0|CP019600.1_1596997_1598083_+	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein	NA|393aa|down_0|CP019600.1_1598615_1599794_+	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein	NA|334aa|down_1|CP019600.1_1600001_1601003_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|720aa|down_2|CP019600.1_1601008_1603168_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|393aa|down_3|CP019600.1_1603332_1604511_+	TIGR00990, Mitochondrial_import_receptor_subunit_TOM70, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	NA|169aa|down_4|CP019600.1_1604882_1605389_-	cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|269aa|down_5|CP019600.1_1605500_1606307_-	cd08770, DAP_dppA_3, Peptidase M55, D-aminopeptidase dipeptide-binding protein family	NA|402aa|down_6|CP019600.1_1606752_1607958_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|142aa|down_7|CP019600.1_1608286_1608712_+	NA	NA|180aa|down_8|CP019600.1_1608799_1609339_-	NA	NA|329aa|down_9|CP019600.1_1609494_1610481_+	cd19089, AKR_AKR14A1_2, AKR14A family of aldo-keto reductase (AKR)
GCA_002850235.1_ASM285023v1	CP019600	Brachyspira hyodysenteriae strain BH718 chromosome, complete genome	7	2254717-2254813	6	CRISPRCasFinder	no		WYL,DinG,cas4,csa3,RT	Orphan	CAATTTTTATTAGCAACAATATAAAA	26	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,cas4,csa3,RT	NA,NA	NA|293aa|up_9|CP019600.1_2246209_2247088_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|112aa|up_8|CP019600.1_2247233_2247569_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|304aa|up_7|CP019600.1_2247712_2248624_+	pfam00119, ATP-synt_A, ATP synthase A chain	NA|74aa|up_6|CP019600.1_2248660_2248882_+	cd18121, ATP-synt_Fo_c, membrane-bound Fo complex of F-ATP synthase, subunit c	NA|168aa|up_5|CP019600.1_2248917_2249421_+	cd06503, ATP-synt_Fo_b, F-type ATP synthase, membrane subunit b	NA|183aa|up_4|CP019600.1_2249457_2250006_+	pfam00213, OSCP, ATP synthase delta (OSCP) subunit	NA|214aa|up_3|CP019600.1_2250031_2250673_+	pfam00213, OSCP, ATP synthase delta (OSCP) subunit	NA|500aa|up_2|CP019600.1_2250699_2252199_+	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|293aa|up_1|CP019600.1_2252262_2253141_+	pfam00231, ATP-synt, ATP synthase	NA|247aa|up_0|CP019600.1_2253783_2254524_+	sd00045, ANK, ankyrin repeats	NA|255aa|down_0|CP019600.1_2254871_2255636_+	sd00045, ANK, ankyrin repeats	NA|250aa|down_1|CP019600.1_2255875_2256625_+	sd00045, ANK, ankyrin repeats	NA|237aa|down_2|CP019600.1_2256858_2257569_+	sd00045, ANK, ankyrin repeats	NA|303aa|down_3|CP019600.1_2257958_2258867_-	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|393aa|down_4|CP019600.1_2259073_2260252_+	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|720aa|down_5|CP019600.1_2260534_2262694_+	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|602aa|down_6|CP019600.1_2262851_2264657_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|180aa|down_7|CP019600.1_2264711_2265251_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|123aa|down_8|CP019600.1_2265940_2266309_+	pfam04342, DMT_6, Putative member of DMT superfamily (DUF486)	NA|492aa|down_9|CP019600.1_2266397_2267873_-	pfam13623, SurA_N_2, SurA N-terminal domain
GCA_002850235.1_ASM285023v1	CP019600	Brachyspira hyodysenteriae strain BH718 chromosome, complete genome	8	2681510-2681609	7	CRISPRCasFinder	no		WYL,DinG,cas4,csa3,RT	Orphan	TTAATAAAAATATATCATTATAA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,cas4,csa3,RT	NA,NA|68aa|down_7|CP019600.1_2690902_2691106_-	NA|965aa|up_9|CP019600.1_2666916_2669811_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|128aa|up_8|CP019600.1_2669923_2670307_+	pfam10135, Rod-binding, Rod binding protein	NA|150aa|up_7|CP019600.1_2670343_2670793_+	pfam10825, DUF2752, Protein of unknown function (DUF2752)	NA|447aa|up_6|CP019600.1_2670893_2672234_+	pfam00593, TonB_dep_Rec, TonB dependent receptor	NA|921aa|up_5|CP019600.1_2672289_2675052_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|159aa|up_4|CP019600.1_2675727_2676204_+	pfam04229, GrpB, GrpB protein	NA|316aa|up_3|CP019600.1_2676376_2677324_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|717aa|up_2|CP019600.1_2677269_2679420_-	PRK05582, PRK05582, type I DNA topoisomerase	NA|425aa|up_1|CP019600.1_2679462_2680737_-	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|238aa|up_0|CP019600.1_2680733_2681447_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|CP019600.1_2685117_2686236_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|330aa|down_1|CP019600.1_2686265_2687255_+	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|217aa|down_2|CP019600.1_2687314_2687965_+	pfam00302, CAT, Chloramphenicol acetyltransferase	NA|414aa|down_3|CP019600.1_2688092_2689334_+	NF033164, lipo_LipL46, lipoprotein LipL46	NA|182aa|down_4|CP019600.1_2689344_2689890_+	pfam02677, DUF208, Uncharacterized BCR, COG1636	NA|121aa|down_5|CP019600.1_2689899_2690262_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|63aa|down_6|CP019600.1_2690465_2690654_-	pfam14070, YjfB_motility, Putative motility protein	NA|68aa|down_7|CP019600.1_2690902_2691106_-	NA	NA|563aa|down_8|CP019600.1_2691360_2693049_+	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	NA|202aa|down_9|CP019600.1_2693236_2693842_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein
