The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP036300	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 chromosome, complete genome	5459441	448576	517954	5459441	capsid,integrase,tail,tRNA,protease,terminase,head,portal	uncultured_Caudovirales_phage(61.11%)	74	466184:466201	482179:482196
QBH36270.1|448576_449524_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	37.2	2.2e-07
QBH36271.1|449538_450048_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	40.3	2.6e-18
QBH36272.1|450176_451301_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
QBH36273.1|451272_451746_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
QBH36274.1|451771_452314_+	hypothetical protein	NA	NA	NA	NA	NA
QBH36275.1|452318_452891_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA	NA
QBH36276.1|452894_453713_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
QBH36277.1|453709_453967_+	DUF1488 domain-containing protein	NA	NA	NA	NA	NA
QBH36278.1|453942_454497_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
QBH36279.1|460292_460514_-	hypothetical protein	NA	NA	NA	NA	NA
QBH36280.1|460807_463918_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
QBH36281.1|463930_465070_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
QBH36282.1|465448_466099_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA	NA
466184:466201	attL	GTATCAGTTCATGCCGTA	NA	NA	NA	NA
QBH36283.1|466374_467601_+|integrase	site-specific integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	62.2	1.8e-150
QBH36284.1|467693_468635_+	hypothetical protein	NA	NA	NA	NA	NA
QBH36285.1|468816_469101_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
QBH36286.1|469111_469891_+	hypothetical protein	NA	Q8HA02	Enterobacteria_phage	51.5	6.2e-40
QBH40860.1|470014_470209_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
QBH40859.1|470342_470612_+	host cell division inhibitor Icd-like protein	NA	A0A2H4JGW3	uncultured_Caudovirales_phage	94.4	2.4e-44
QBH36287.1|470604_470793_+	hypothetical protein	NA	NA	NA	NA	NA
QBH36288.1|470785_471100_+	hypothetical protein	NA	NA	NA	NA	NA
QBH36289.1|471096_471465_+	hypothetical protein	NA	A0A2H4JCX7	uncultured_Caudovirales_phage	81.1	3.7e-51
QBH36290.1|471461_471827_+	hypothetical protein	NA	NA	NA	NA	NA
QBH36291.1|471826_473962_+	DUF927 domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	62.4	3.4e-205
QBH36292.1|474304_474640_+	hypothetical protein	NA	NA	NA	NA	NA
QBH36293.1|474688_475201_-	hypothetical protein	NA	NA	NA	NA	NA
QBH36294.1|475464_476631_+|capsid	phage major capsid protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	95.9	9.8e-207
QBH36295.1|476682_477243_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	95.7	1.2e-98
QBH36296.1|477244_478486_+|portal	phage portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	96.5	1.0e-230
QBH36297.1|478482_478818_+|head,tail	head-tail adaptor	head,tail	A0A2H4JHK5	uncultured_Caudovirales_phage	57.8	3.7e-26
QBH36298.1|478814_479114_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JD08	uncultured_Caudovirales_phage	80.8	3.4e-39
QBH36299.1|479113_479557_+	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	91.8	2.8e-77
QBH36300.1|479683_479875_+|terminase	terminase	terminase	NA	NA	NA	NA
QBH36301.1|479832_480189_+|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	99.2	5.5e-60
QBH36302.1|480172_481834_+|terminase	terminase large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	98.0	0.0e+00
QBH36303.1|481836_482028_+	hypothetical protein	NA	NA	NA	NA	NA
QBH36304.1|482181_482478_-	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA	NA
482179:482196	attR	GTATCAGTTCATGCCGTA	NA	NA	NA	NA
QBH36305.1|482502_483468_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
QBH36306.1|483625_483853_-	hypothetical protein	NA	NA	NA	NA	NA
QBH36307.1|483825_484707_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
QBH40861.1|484718_486170_-	sodium/pantothenate symporter	NA	NA	NA	NA	NA
QBH36308.1|486159_486402_-	DUF997 family protein	NA	NA	NA	NA	NA
QBH36309.1|486512_487862_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
QBH36310.1|487872_488340_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
QBH36311.1|488362_488815_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
QBH36312.1|489038_489647_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
QBH36313.1|489646_490648_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
QBH36314.1|490876_491068_+	hypothetical protein	NA	NA	NA	NA	NA
QBH36315.1|491147_493088_+	RNase E specificity factor CsrD	NA	NA	NA	NA	NA
QBH36316.1|493393_494437_+	rod shape-determining protein	NA	F2Y0P3	Organic_Lake_phycodnavirus	22.3	6.7e-05
QBH36317.1|494507_495500_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
QBH36318.1|495499_495988_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
QBH36319.1|495995_496577_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
QBH36320.1|496579_498049_+	ribonuclease G	NA	NA	NA	NA	NA
QBH36321.1|498086_501884_+	AsmA2 domain-containing protein	NA	NA	NA	NA	NA
QBH36322.1|501972_503418_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
QBH36323.1|503453_504383_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA	NA
QBH36324.1|504514_504718_+	DUF1656 domain-containing protein	NA	NA	NA	NA	NA
QBH36325.1|504725_505658_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA	NA
QBH36326.1|505663_507631_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA	NA
QBH36327.1|507710_507986_+	hypothetical protein	NA	NA	NA	NA	NA
QBH36328.1|508036_508303_-	peroxide/acid stress response protein YhcN	NA	NA	NA	NA	NA
QBH36329.1|508401_508665_-	peroxide/acid stress response protein YhcN	NA	NA	NA	NA	NA
QBH36330.1|509040_509511_-	transcriptional regulator ArgR	NA	NA	NA	NA	NA
QBH36331.1|509925_510864_+	malate dehydrogenase	NA	NA	NA	NA	NA
QBH36332.1|511000_512059_-|protease	serine endoprotease DegS	protease	NA	NA	NA	NA
QBH36333.1|512146_513514_-|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	25.3	6.0e-22
QBH36334.1|513687_514086_-	DUF1043 family protein	NA	NA	NA	NA	NA
QBH36335.1|514276_515404_+	cell division protein ZapE	NA	NA	NA	NA	NA
QBH36336.1|515669_516098_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
QBH36337.1|516113_516506_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
QBH36338.1|516615_516819_-	hypothetical protein	NA	NA	NA	NA	NA
QBH36339.1|516817_517456_+	stringent starvation protein A	NA	NA	NA	NA	NA
QBH36340.1|517459_517954_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	54.8	1.5e-26
>prophage 2
CP036300	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 chromosome, complete genome	5459441	1218042	1267186	5459441	capsid,integrase,tail,tRNA,terminase,transposase,lysis,plate,head,coat,portal	Salmonella_phage(80.0%)	63	1208153:1208170	1246720:1246737
1208153:1208170	attL	CGGCAAAGAGGCGGGCGA	NA	NA	NA	NA
QBH37004.1|1218042_1219023_-|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	99.1	8.9e-185
QBH37005.1|1219068_1220067_-|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	94.5	2.2e-183
QBH37006.1|1220069_1220699_-	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	54.5	1.4e-61
QBH37007.1|1220821_1221064_+	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	4.0e-38
QBH37008.1|1221096_1221606_+	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	85.8	1.1e-77
QBH37009.1|1221613_1221814_+	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	68.8	4.5e-19
QBH37010.1|1221777_1222116_+	hypothetical protein	NA	A0A218M4I7	Erwinia_phage	58.0	6.2e-29
QBH37011.1|1222183_1222417_+	DUF2732 family protein	NA	A0A1S6L021	Salmonella_phage	90.9	6.0e-31
QBH37012.1|1222416_1222644_+	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	92.0	5.1e-35
QBH37013.1|1222640_1223492_+	DNA adenine methylase	NA	A0A1S6L011	Salmonella_phage	75.4	2.2e-115
QBH37014.1|1223488_1225873_+	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	87.9	0.0e+00
QBH37015.1|1226102_1226354_+	hypothetical protein	NA	NA	NA	NA	NA
QBH40896.1|1226353_1227838_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBH37016.1|1227945_1228134_+	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	90.3	2.2e-23
QBH37017.1|1228145_1228379_+	DinI family protein	NA	A0A0M4S6H1	Salmonella_phage	96.1	2.0e-34
QBH37018.1|1228474_1229158_-	hypothetical protein	NA	NA	NA	NA	NA
QBH37019.1|1229144_1230224_-	hypothetical protein	NA	NA	NA	NA	NA
QBH37020.1|1230223_1231225_-	hypothetical protein	NA	NA	NA	NA	NA
QBH37021.1|1231746_1232016_+	hypothetical protein	NA	D2IZW1	Enterococcus_phage	41.3	1.4e-15
QBH37022.1|1232072_1233116_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	85.6	3.1e-172
QBH37023.1|1233115_1234879_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	91.8	0.0e+00
QBH37024.1|1235019_1235853_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	77.6	4.4e-100
QBH37025.1|1235869_1236922_+|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	91.0	6.8e-175
QBH37026.1|1236925_1237579_+	hypothetical protein	NA	A0A1S6KZX1	Salmonella_phage	80.0	1.9e-90
QBH37027.1|1237674_1238139_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	85.7	1.5e-73
QBH37028.1|1238138_1238342_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	89.6	9.8e-30
QBH40897.1|1238345_1238561_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	88.7	6.1e-30
QBH37029.1|1238541_1239051_+	lysozyme	NA	E5G6N1	Salmonella_phage	85.2	1.6e-81
QBH37030.1|1239055_1239439_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	45.4	1.9e-18
QBH37031.1|1239435_1239864_+|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	82.5	7.1e-54
QBH37032.1|1239793_1239997_+	hypothetical protein	NA	A0A1S6KZX6	Salmonella_phage	77.6	3.0e-23
QBH37033.1|1239959_1240382_+|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	83.2	8.2e-63
QBH37034.1|1240374_1240821_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	72.3	2.5e-54
QBH37035.1|1240843_1241710_-	hypothetical protein	NA	NA	NA	NA	NA
QBH37036.1|1241804_1242377_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	70.8	1.4e-76
QBH37037.1|1242373_1242736_+|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	85.6	8.4e-48
QBH37038.1|1242722_1243631_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	68.9	1.9e-109
QBH37039.1|1243623_1244295_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	58.9	3.2e-61
QBH37040.1|1244296_1246246_+|coat	spore coat protein CotH	coat	Q6QI97	Burkholderia_phage	38.9	1.0e-06
QBH37041.1|1246255_1247374_+	hypothetical protein	NA	A0A248XD67	Klebsiella_phage	38.0	4.4e-55
1246720:1246737	attR	CGGCAAAGAGGCGGGCGA	NA	NA	NA	NA
QBH37042.1|1247425_1248499_+|tail	phage tail protein	tail	A0A1S6KZZ8	Salmonella_phage	53.6	6.6e-40
QBH37043.1|1248647_1249820_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	91.5	3.4e-207
QBH37044.1|1249829_1250345_+|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	84.2	1.4e-80
QBH37045.1|1250397_1250697_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	78.0	8.2e-33
QBH37046.1|1250711_1250831_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.2e-13
QBH37047.1|1250823_1253454_+|tail	phage tail tape measure protein	tail	E5FFG5	Burkholderia_phage	41.9	8.9e-115
QBH37048.1|1253450_1253936_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.1	5.2e-61
QBH37049.1|1253932_1255027_+	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	83.6	2.4e-170
QBH37050.1|1255093_1255312_+	levansucrase regulator	NA	Q53ZE7	Salmonella_virus	72.2	1.9e-26
QBH37051.1|1255339_1255717_-	hypothetical protein	NA	NA	NA	NA	NA
QBH37052.1|1256320_1256803_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	2.3e-29
QBH37053.1|1256913_1257390_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
QBH37054.1|1257379_1257670_+	RnfH family protein	NA	NA	NA	NA	NA
QBH37055.1|1257736_1258078_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
QBH37056.1|1258225_1259887_-	DNA repair protein RecN	NA	NA	NA	NA	NA
QBH37057.1|1259973_1260852_-	NAD(+) kinase	NA	NA	NA	NA	NA
QBH37058.1|1260976_1261567_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
QBH37059.1|1261686_1262973_-	DUF21 domain-containing protein	NA	NA	NA	NA	NA
QBH37060.1|1262992_1263784_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
QBH37061.1|1263947_1265312_+	signal recognition particle protein	NA	NA	NA	NA	NA
QBH37062.1|1265571_1265820_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
QBH40898.1|1265838_1266387_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
QBH37063.1|1266418_1267186_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
>prophage 3
CP036300	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 chromosome, complete genome	5459441	1371902	1424645	5459441	terminase,tail,transposase,holin	Salmonella_phage(40.38%)	61	NA	NA
QBH37151.1|1371902_1373369_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	38.7	1.2e-87
QBH37152.1|1373436_1375014_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA	NA
QBH37153.1|1375205_1376456_+	DUF4102 domain-containing protein	NA	A0A1X9TCT6	Enterobacter_phage	84.4	5.8e-205
QBH37154.1|1376398_1376641_-	hypothetical protein	NA	NA	NA	NA	NA
QBH37155.1|1376637_1377231_-	adenine methylase	NA	T1SA14	Salmonella_phage	91.9	6.3e-109
QBH37156.1|1377227_1377890_-	hypothetical protein	NA	A0A059VF56	Pseudomonas_phage	46.6	1.2e-47
QBH37157.1|1377886_1378045_-	DUF1317 family protein	NA	T1SAR0	Salmonella_phage	78.8	1.1e-17
QBH37158.1|1378037_1378331_-	PerC family transcriptional regulator	NA	T1S9J5	Salmonella_phage	71.1	4.0e-32
QBH37159.1|1378440_1378689_-	AlpA family phage regulatory protein	NA	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	76.8	4.9e-31
QBH37160.1|1378737_1379619_-	recombinase RecT	NA	T1SBJ5	Salmonella_phage	84.3	8.9e-136
QBH37161.1|1379615_1380437_-	exodeoxyribonuclease VIII	NA	A0A193GYK2	Enterobacter_phage	80.2	1.8e-130
QBH37162.1|1380433_1380733_-	hypothetical protein	NA	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	54.5	2.1e-20
QBH37163.1|1381099_1381681_-	XRE family transcriptional regulator	NA	Q858D7	Salmonella_phage	64.3	7.1e-65
QBH37164.1|1381835_1382069_+	hypothetical protein	NA	T1SAR5	Salmonella_phage	66.2	9.2e-24
QBH37165.1|1382215_1382425_+	hypothetical protein	NA	A0A193GYW4	Enterobacter_phage	78.3	1.8e-26
QBH37166.1|1382424_1383192_+	primosomal protein	NA	A0A193GZ86	Enterobacter_phage	91.4	8.9e-140
QBH37167.1|1383188_1383974_+	replication protein	NA	A0A193GYX1	Enterobacter_phage	87.7	3.7e-133
QBH37168.1|1384093_1384441_+	DUF1064 domain-containing protein	NA	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	82.6	6.5e-50
QBH37169.1|1384633_1385044_+	hypothetical protein	NA	A0A2P1MXC5	Escherichia_phage	45.1	4.3e-16
QBH37170.1|1385027_1385219_+	hypothetical protein	NA	NA	NA	NA	NA
QBH37171.1|1385215_1385860_+	hypothetical protein	NA	Q1MVG0	Enterobacteria_phage	79.3	8.0e-110
QBH40902.1|1386153_1386621_+	hypothetical protein	NA	A0A2R2Z312	Escherichia_phage	51.7	1.3e-37
QBH37172.1|1386620_1386914_+	hypothetical protein	NA	Q6UAT9	Klebsiella_phage	86.6	2.7e-44
QBH37173.1|1386910_1387531_+	hypothetical protein	NA	Q1MVF7	Enterobacteria_phage	40.7	1.0e-29
QBH40904.1|1387530_1387734_+	hypothetical protein	NA	NA	NA	NA	NA
QBH37174.1|1387726_1388065_+	hypothetical protein	NA	A0A193GYX4	Enterobacter_phage	80.0	1.8e-44
QBH40903.1|1388161_1389646_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBH37175.1|1389645_1389897_-	hypothetical protein	NA	NA	NA	NA	NA
QBH37176.1|1390049_1390307_+	lF-82	NA	NA	NA	NA	NA
QBH37177.1|1390384_1390969_+|terminase	terminase small subunit	terminase	T1SBI8	Salmonella_phage	88.6	2.2e-90
QBH37178.1|1390965_1392441_+|terminase	terminase	terminase	Q858H3	Salmonella_phage	93.1	6.4e-280
QBH37179.1|1392484_1392856_-	hypothetical protein	NA	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	91.9	3.7e-59
QBH37180.1|1392905_1393148_+	hypothetical protein	NA	NA	NA	NA	NA
QBH37181.1|1393609_1393816_+	hypothetical protein	NA	T1SA67	Salmonella_phage	88.2	4.8e-08
QBH37182.1|1393830_1395513_+|tail	phage tail protein	tail	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	84.4	1.5e-264
QBH37183.1|1395509_1395806_+	hypothetical protein	NA	T1SBI9	Salmonella_phage	70.4	1.2e-33
QBH37184.1|1395808_1396489_+	peptidase	NA	G9L6C4	Escherichia_phage	84.0	6.1e-76
QBH37185.1|1396503_1397490_+	hypothetical protein	NA	A0A193GZ49	Enterobacter_phage	94.2	2.5e-179
QBH37186.1|1397543_1397981_+	hypothetical protein	NA	A0A193GYT9	Enterobacter_phage	91.7	1.3e-66
QBH37187.1|1397991_1398333_+	hypothetical protein	NA	G9L6C7	Escherichia_phage	70.8	2.4e-36
QBH37188.1|1398383_1398707_+	hypothetical protein	NA	G9L6C8	Escherichia_phage	85.0	5.3e-46
QBH37189.1|1398706_1399312_+	hypothetical protein	NA	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	77.0	4.0e-87
QBH37190.1|1399311_1401789_+	hypothetical protein	NA	Q858G3	Salmonella_phage	84.4	0.0e+00
QBH37191.1|1401788_1402253_+	hypothetical protein	NA	Q858G2	Salmonella_phage	81.2	1.5e-70
QBH37192.1|1402252_1402792_+	hypothetical protein	NA	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	80.0	8.0e-71
QBH37193.1|1402802_1405337_+	hypothetical protein	NA	Q858G0	Salmonella_phage	84.1	0.0e+00
QBH37194.1|1405336_1407247_+	hypothetical protein	NA	Q858F9	Salmonella_phage	82.7	5.4e-287
QBH37195.1|1407246_1410003_+	hypothetical protein	NA	Q858F8	Salmonella_phage	95.4	0.0e+00
QBH37196.1|1409999_1410194_+	hypothetical protein	NA	Q858F7	Salmonella_phage	67.2	6.5e-15
QBH37197.1|1410228_1410381_-	transmembrane anchored protein	NA	G9L6D9	Escherichia_phage	83.7	2.5e-14
QBH37198.1|1410479_1410776_-	hypothetical protein	NA	T1SA06	Salmonella_phage	63.9	6.9e-24
QBH37199.1|1413603_1413867_+	hypothetical protein	NA	NA	NA	NA	NA
QBH37200.1|1413907_1414735_-	hypothetical protein	NA	NA	NA	NA	NA
QBH37201.1|1415154_1416135_-|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
QBH37202.1|1417003_1418266_-|transposase	IS1380-like element ISEc9 family transposase	transposase	A0A1B0VDR3	Salmonella_phage	100.0	1.3e-39
QBH37203.1|1419374_1420691_+	right-handed parallel beta-helix repeat-containing protein	NA	A0A0K2FI18	Enterobacter_phage	32.3	2.3e-34
QBH37204.1|1420777_1421182_+	hypothetical protein	NA	T1SA79	Salmonella_phage	81.1	8.7e-54
QBH37205.1|1421168_1421474_+|holin	phage holin family protein	holin	A0A193GYK3	Enterobacter_phage	81.4	2.7e-39
QBH37206.1|1421463_1422093_+	glycoside hydrolase family 19 protein	NA	Q858F0	Salmonella_phage	76.9	1.8e-90
QBH37207.1|1422089_1422590_+	DUF2514 domain-containing protein	NA	Q858E9	Salmonella_phage	76.9	1.3e-59
QBH37208.1|1422776_1424645_-	phosphatase	NA	A0A2P0VMN7	Tetraselmis_virus	22.6	2.6e-07
>prophage 4
CP036300	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 chromosome, complete genome	5459441	1756996	1763901	5459441		Planktothrix_phage(33.33%)	6	NA	NA
QBH40916.1|1756996_1757860_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.5	7.4e-10
QBH37498.1|1757870_1758644_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.7	3.9e-26
QBH40917.1|1758884_1759778_-	lipid kinase YegS	NA	A0A1V0SBJ0	Catovirus	29.8	6.1e-15
QBH37499.1|1760023_1761385_-	U32 family peptidase	NA	Q6DW11	Phage_TP	94.8	1.8e-207
QBH37500.1|1761703_1762426_-	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	33.2	8.3e-31
QBH37501.1|1762422_1763901_-	two-component system sensor histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	28.3	1.9e-29
>prophage 5
CP036300	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 chromosome, complete genome	5459441	1807246	1818921	5459441	transposase	Escherichia_phage(33.33%)	10	NA	NA
QBH37531.1|1807246_1808653_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.7	4.7e-38
QBH37532.1|1808879_1810295_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	31.0	1.4e-53
QBH37533.1|1810316_1811687_+	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	25.9	6.4e-32
QBH37534.1|1811841_1812906_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	54.7	9.8e-105
QBH37535.1|1812919_1813789_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	66.7	1.7e-110
QBH37536.1|1813820_1814711_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.2	2.8e-28
QBH37537.1|1814725_1815280_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	58.2	2.9e-52
QBH37538.1|1815459_1816626_+	UDP-glucose 6-dehydrogenase	NA	M1I798	Paramecium_bursaria_Chlorella_virus	54.7	9.1e-112
QBH37539.1|1816988_1817900_+	acyltransferase	NA	NA	NA	NA	NA
QBH37540.1|1817940_1818921_+|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	99.1	8.9e-185
>prophage 6
CP036300	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 chromosome, complete genome	5459441	2815218	2826105	5459441		Escherichia_phage(87.5%)	9	NA	NA
QBH38445.1|2815218_2818326_+	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	59.6	0.0e+00
QBH38446.1|2818380_2819646_+	MFS transporter	NA	NA	NA	NA	NA
QBH38447.1|2819676_2820765_-	chromosome segregation protein SMC	NA	A0A077SLJ9	Escherichia_phage	100.0	8.0e-211
QBH38448.1|2820851_2821112_-	hypothetical protein	NA	A0A077SK33	Escherichia_phage	97.7	3.5e-40
QBH38449.1|2821409_2822270_+	class A broad-spectrum beta-lactamase SHV-11	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
QBH38450.1|2822290_2823052_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
QBH38451.1|2823312_2824215_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	99.3	7.7e-159
QBH38452.1|2824226_2825492_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	99.5	6.6e-233
QBH38453.1|2825484_2826105_+	aldolase	NA	A0A077SK32	Escherichia_phage	100.0	8.0e-115
>prophage 7
CP036300	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 chromosome, complete genome	5459441	3009507	3082204	5459441	tail,terminase,transposase,lysis,plate,head	uncultured_Caudovirales_phage(32.08%)	86	NA	NA
QBH38620.1|3009507_3010593_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
QBH38621.1|3010556_3012311_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
QBH38622.1|3013982_3017408_-	type VI secretion protein VasK	NA	NA	NA	NA	NA
QBH38623.1|3017391_3018531_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38624.1|3018527_3018785_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
QBH38625.1|3018829_3021247_-	DUF2235 domain-containing protein	NA	NA	NA	NA	NA
QBH38626.1|3021234_3021765_-	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
QBH38627.1|3021832_3022363_-	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
QBH38628.1|3022431_3022962_-	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
QBH38629.1|3023029_3023560_-	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
QBH38630.1|3023628_3024159_-	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
QBH38631.1|3024222_3025002_-	DUF4123 domain-containing protein	NA	NA	NA	NA	NA
QBH38632.1|3025002_3027381_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	33.8	9.2e-18
QBH38633.1|3027373_3030028_-	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	33.4	2.5e-96
QBH38634.1|3030292_3030784_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
QBH38635.1|3030788_3032495_-	OmpA family protein	NA	NA	NA	NA	NA
QBH38636.1|3032491_3033181_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
QBH40988.1|3033177_3034518_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
QBH38637.1|3034530_3036075_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
QBH40989.1|3036117_3036609_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
QBH38638.1|3037078_3038059_+|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	99.1	8.9e-185
QBH38639.1|3038116_3038326_+	hypothetical protein	NA	NA	NA	NA	NA
QBH38640.1|3038654_3038903_+	DinI family protein	NA	S5MQI1	Escherichia_phage	70.4	1.4e-25
QBH38641.1|3039125_3039410_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38642.1|3039514_3039724_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38643.1|3039720_3040452_-	hypothetical protein	NA	NA	NA	NA	NA
QBH40990.1|3040462_3041191_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38644.1|3043541_3043739_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38645.1|3043738_3044605_-	hypothetical protein	NA	A0A2H4IYR0	uncultured_Caudovirales_phage	64.5	1.9e-34
QBH38646.1|3044604_3045378_-	DUF2612 domain-containing protein	NA	A0A2H4J1A9	uncultured_Caudovirales_phage	54.4	2.8e-77
QBH38647.1|3045374_3046571_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	72.9	3.9e-158
QBH38648.1|3046570_3046924_-	hypothetical protein	NA	A0A2H4J629	uncultured_Caudovirales_phage	80.3	2.3e-50
QBH38649.1|3046925_3047579_-	hypothetical protein	NA	A0A2H4J8H6	uncultured_Caudovirales_phage	63.5	1.0e-59
QBH38650.1|3047632_3048199_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38651.1|3048235_3048421_+	hypothetical protein	NA	NA	NA	NA	NA
QBH38652.1|3048473_3048815_-	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	46.6	1.8e-23
QBH38653.1|3048814_3049837_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	54.2	9.2e-100
QBH38654.1|3049839_3050142_-	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	55.2	2.0e-26
QBH38655.1|3050142_3050742_-	hypothetical protein	NA	A0A2H4J1B3	uncultured_Caudovirales_phage	57.6	9.9e-54
QBH38656.1|3050741_3052745_-	lytic transglycosylase domain-containing protein	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	63.6	1.2e-247
QBH38657.1|3052734_3052887_-	NTP pyrophosphohydrolase	NA	A0A2H4J1A2	uncultured_Caudovirales_phage	88.0	7.6e-19
QBH38658.1|3052922_3053348_-	hypothetical protein	NA	A0A2H4J2V6	uncultured_Caudovirales_phage	63.4	2.6e-40
QBH38659.1|3053351_3053792_-	DUF3277 family protein	NA	A0A0M5M1K6	Salmonella_phage	80.1	3.3e-62
QBH38660.1|3053802_3054948_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	76.9	6.3e-166
QBH40991.1|3054951_3055392_-	hypothetical protein	NA	A0A2H4J1A0	uncultured_Caudovirales_phage	51.7	1.6e-40
QBH38661.1|3055486_3055873_-|head,tail	head-tail adaptor	head,tail	A0A2H4J1A4	uncultured_Caudovirales_phage	78.2	1.1e-48
QBH38662.1|3055872_3056379_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38663.1|3056375_3056795_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	60.7	3.3e-40
QBH38664.1|3056763_3057045_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38665.1|3057084_3058026_-	DUF2184 domain-containing protein	NA	A0A2H4J191	uncultured_Caudovirales_phage	77.1	1.7e-137
QBH38666.1|3058037_3058532_-	hypothetical protein	NA	A0A2H4JHM9	uncultured_Caudovirales_phage	62.7	4.2e-50
QBH38667.1|3058535_3059738_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	54.1	2.6e-106
QBH40992.1|3059789_3060338_-	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	56.3	3.0e-49
QBH38668.1|3060393_3061845_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	68.8	3.8e-192
QBH38669.1|3062082_3063483_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	69.0	9.4e-188
QBH38670.1|3063433_3064186_-	hypothetical protein	NA	A0A077KBY7	Edwardsiella_phage	66.0	4.0e-12
QBH38671.1|3064287_3064608_-	negative regulator GrlR	NA	NA	NA	NA	NA
QBH38672.1|3064700_3064958_-	Rz1 lytic protein	NA	S5FXQ4	Shigella_phage	70.9	2.3e-23
QBH38673.1|3064842_3065232_-	lipase chaperone	NA	A0A192Y6H8	Salmonella_phage	49.2	9.4e-21
QBH38674.1|3065228_3065759_-	lysozyme	NA	K7PLY1	Enterobacteria_phage	77.1	2.7e-79
QBH38675.1|3065761_3066010_-|lysis	lysis protein	lysis	NA	NA	NA	NA
QBH38676.1|3066415_3067198_-	antitermination protein	NA	F1C595	Cronobacter_phage	76.8	7.2e-113
QBH38677.1|3067194_3067671_-	hypothetical protein	NA	A0A286N2Q1	Klebsiella_phage	100.0	1.8e-90
QBH38678.1|3067667_3068630_-	DNA primase	NA	A0A286N2Q0	Klebsiella_phage	99.4	4.8e-183
QBH38679.1|3068631_3070290_-	DEAD/DEAH box helicase	NA	A0A286N2P9	Klebsiella_phage	96.0	0.0e+00
QBH38680.1|3070598_3070892_-	hypothetical protein	NA	A0A286S2B5	Klebsiella_phage	97.6	2.8e-38
QBH38681.1|3070866_3071088_-	XRE family transcriptional regulator	NA	A0A286S2C1	Klebsiella_phage	100.0	3.0e-32
QBH38682.1|3071185_3071854_+	LexA family transcriptional regulator	NA	A0A286S2B2	Klebsiella_phage	99.5	2.4e-125
QBH38683.1|3072024_3072339_+	hypothetical protein	NA	A0A286S1T9	Klebsiella_phage	100.0	1.0e-49
QBH38684.1|3072331_3072520_+	hypothetical protein	NA	A0A286S1P8	Klebsiella_phage	100.0	4.6e-26
QBH38685.1|3072689_3073055_+	hypothetical protein	NA	A0A286S1Q6	Klebsiella_phage	99.2	6.9e-58
QBH38686.1|3073047_3073302_+	hypothetical protein	NA	A0A286SGR4	Klebsiella_phage	97.6	3.1e-41
QBH38687.1|3073273_3073492_+	hypothetical protein	NA	A0A286S1P6	Klebsiella_phage	98.6	6.6e-32
QBH38688.1|3073488_3073914_+	hypothetical protein	NA	A0A286S1S2	Klebsiella_phage	77.9	3.5e-53
QBH38689.1|3073910_3074105_+	hypothetical protein	NA	NA	NA	NA	NA
QBH38690.1|3074101_3074929_+	SPFH/Band 7/PHB domain protein	NA	Q8W654	Enterobacteria_phage	84.0	5.5e-111
QBH38691.1|3075033_3075552_+	hypothetical protein	NA	A0A286S1S7	Klebsiella_phage	98.8	1.7e-94
QBH38692.1|3075557_3076268_+	DNA-binding protein	NA	A0A286S260	Klebsiella_phage	88.3	2.1e-111
QBH38693.1|3076257_3076482_+	hypothetical protein	NA	A0A286S2B3	Klebsiella_phage	89.2	3.1e-29
QBH38694.1|3076478_3076691_+	hypothetical protein	NA	A0A286S2B6	Klebsiella_phage	98.6	3.4e-33
QBH38695.1|3076687_3077167_+	hypothetical protein	NA	NA	NA	NA	NA
QBH38696.1|3077345_3077588_+	AlpA family transcriptional regulator	NA	A0A0M4RTZ2	Salmonella_phage	73.8	2.2e-20
QBH38697.1|3077568_3078750_-	DUF4102 domain-containing protein	NA	A0A0M4QX09	Salmonella_phage	84.2	5.6e-202
QBH38698.1|3078946_3079495_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
QBH38699.1|3079693_3081226_-	HD domain-containing protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	30.0	1.1e-21
QBH38700.1|3081442_3082204_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.5	2.4e-20
>prophage 8
CP036300	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 chromosome, complete genome	5459441	3115137	3146016	5459441	integrase,transposase,holin	Enterobacteria_phage(38.71%)	42	3114919:3114934	3143322:3143337
3114919:3114934	attL	TATGCCCTACGATAGC	NA	NA	NA	NA
QBH38730.1|3115137_3115809_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	59.6	4.5e-79
QBH40996.1|3115995_3116823_+	FRG domain-containing protein	NA	A0A1S6KZX9	Salmonella_phage	30.2	8.4e-19
QBH38731.1|3116898_3118164_-	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	82.7	9.6e-208
QBH38732.1|3118165_3118585_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	57.5	1.4e-35
QBH40997.1|3118664_3120149_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBH38733.1|3120148_3120400_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38734.1|3121046_3121469_-	hypothetical protein	NA	K7P834	Enterobacteria_phage	45.3	3.6e-26
QBH38735.1|3122061_3122766_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBH38736.1|3123381_3123729_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
QBH40998.1|3123892_3124684_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
QBH38737.1|3125665_3126370_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBH38738.1|3126525_3127065_-	hypothetical protein	NA	A0A286N2Q6	Klebsiella_phage	98.9	3.3e-101
QBH40999.1|3127061_3127361_-|holin	holin	holin	A0A286N2Q5	Klebsiella_phage	100.0	4.5e-47
QBH41000.1|3128010_3128700_-	antiterminator	NA	I6PDF8	Cronobacter_phage	53.1	2.1e-55
QBH38739.1|3128699_3128840_-	YlcG family protein	NA	NA	NA	NA	NA
QBH38740.1|3128836_3129475_-	hypothetical protein	NA	H6WRY9	Salmonella_phage	69.8	3.2e-74
QBH38741.1|3129467_3130136_-	serine/threonine protein phosphatase	NA	K7P6H8	Enterobacteria_phage	78.7	1.4e-104
QBH38742.1|3130132_3130300_-	NinE family protein	NA	K7P7K0	Enterobacteria_phage	62.5	4.6e-09
QBH38743.1|3130280_3130748_-	recombination protein NinB	NA	Q8VNP6	Enterobacteria_phage	45.8	3.4e-33
QBH38744.1|3131268_3132297_+	hypothetical protein	NA	NA	NA	NA	NA
QBH38745.1|3132504_3132750_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38746.1|3132805_3133108_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
QBH38747.1|3133104_3133953_-	AAA family ATPase	NA	K7PLU3	Enterobacteria_phage	60.1	5.1e-88
QBH38748.1|3133949_3134810_-	replication protein	NA	K7PGT1	Enterobacteria_phage	53.3	1.0e-59
QBH38749.1|3134895_3135117_-	transcriptional regulator	NA	G8EYH8	Enterobacteria_phage	41.7	6.9e-05
QBH38750.1|3135157_3135385_-	helix-turn-helix domain-containing protein	NA	Q76H55	Enterobacteria_phage	77.1	1.4e-24
QBH41001.1|3135496_3136195_+	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	84.1	3.7e-108
QBH38751.1|3136217_3136337_+	hypothetical protein	NA	NA	NA	NA	NA
QBH38752.1|3136482_3137559_+	ParA family protein	NA	H2BD62	Pseudomonas_phage	37.9	9.1e-58
QBH38753.1|3137640_3137844_-	hypothetical protein	NA	A0A192Y6Q5	Salmonella_phage	71.6	3.9e-18
QBH38754.1|3138272_3138467_+	hypothetical protein	NA	NA	NA	NA	NA
QBH38755.1|3138555_3138840_+	host nuclease inhibitor GamL	NA	G8C7T1	Escherichia_phage	79.8	1.1e-39
QBH38756.1|3138855_3139701_+	phage recombination protein Bet	NA	A0A1I9KF88	Aeromonas_phage	59.2	1.8e-69
QBH38757.1|3139697_3139985_+	hypothetical protein	NA	NA	NA	NA	NA
QBH38758.1|3139986_3140667_+	exonuclease	NA	A0A0M3ULE0	Salmonella_phage	91.2	8.2e-121
QBH38759.1|3140663_3141092_+	regulator	NA	M9NYX4	Enterobacteria_phage	80.3	7.5e-64
QBH38760.1|3141088_3141751_+	DNA methyltransferase	NA	G8C7S6	Escherichia_phage	84.6	2.7e-105
QBH38761.1|3141747_3142062_+	hypothetical protein	NA	K7PM28	Enterobacteria_phage	50.8	1.6e-10
QBH38762.1|3141958_3143146_-|integrase	site-specific integrase	integrase	K7PGY1	Enterobacteria_phage	52.4	1.1e-120
QBH38763.1|3143322_3144213_+	peptide ABC transporter permease SapC	NA	NA	NA	NA	NA
3143322:3143337	attR	TATGCCCTACGATAGC	NA	NA	NA	NA
QBH38764.1|3144212_3145205_+	peptide ABC transporter ATP-binding protein SapD	NA	G9BWD6	Planktothrix_phage	27.2	3.0e-07
QBH38765.1|3145206_3146016_+	peptide ABC transporter ATP-binding protein SapF	NA	A0A2H4PQG7	Staphylococcus_phage	28.9	2.1e-14
>prophage 9
CP036300	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 chromosome, complete genome	5459441	3273688	3361567	5459441	capsid,tail,integrase,tRNA,holin,terminase,head,portal	Klebsiella_phage(45.45%)	97	3300491:3300505	3359378:3359392
QBH38885.1|3273688_3274189_+|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
QBH38886.1|3274305_3274752_+	DUF441 domain-containing protein	NA	NA	NA	NA	NA
QBH41005.1|3274735_3275527_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QBH38887.1|3275628_3276813_+	MFS transporter	NA	NA	NA	NA	NA
QBH38888.1|3276844_3277537_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38889.1|3277682_3278192_+	DUF523 domain-containing protein	NA	NA	NA	NA	NA
QBH41006.1|3278178_3278535_+	DUF488 domain-containing protein	NA	NA	NA	NA	NA
QBH38890.1|3278524_3278764_-	DUF333 domain-containing protein	NA	NA	NA	NA	NA
QBH38891.1|3279064_3280078_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	29.0	1.4e-12
QBH38892.1|3280135_3280237_+	hypothetical protein	NA	NA	NA	NA	NA
QBH41007.1|3280236_3280311_+	protein YoaJ	NA	NA	NA	NA	NA
QBH38893.1|3280428_3280554_+	hypothetical protein	NA	NA	NA	NA	NA
QBH38894.1|3280613_3280877_-	DUF2534 family protein	NA	NA	NA	NA	NA
QBH38895.1|3281007_3281646_-	leucine efflux protein LeuE	NA	NA	NA	NA	NA
QBH38896.1|3281735_3282650_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	NA	A0A1W6JP29	Morganella_phage	50.4	1.1e-72
QBH38897.1|3282865_3283057_+	hypothetical protein	NA	NA	NA	NA	NA
QBH38898.1|3283311_3284355_-	type II asparaginase	NA	NA	NA	NA	NA
QBH38899.1|3284657_3285866_+	HD domain-containing protein	NA	NA	NA	NA	NA
QBH38900.1|3285939_3287724_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	36.1	5.8e-17
QBH38901.1|3287730_3288621_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBH38902.1|3288741_3290250_+	UbiD family decarboxylase	NA	NA	NA	NA	NA
QBH38903.1|3290560_3291247_-	EAL domain-containing protein	NA	NA	NA	NA	NA
QBH38904.1|3291644_3291824_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38905.1|3291863_3292496_-	DNA-binding protein	NA	NA	NA	NA	NA
QBH38906.1|3293062_3293260_+	hypothetical protein	NA	NA	NA	NA	NA
QBH38907.1|3293375_3294386_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
QBH38908.1|3294382_3295789_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
QBH38909.1|3295844_3296732_-	manganese catalase family protein	NA	NA	NA	NA	NA
QBH38910.1|3296748_3297255_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
QBH38911.1|3297281_3297776_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
QBH38912.1|3297866_3298052_-	stress-induced acidophilic repeat motif-containing protein	NA	NA	NA	NA	NA
QBH38913.1|3298673_3299867_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA	NA
QBH38914.1|3299979_3300207_+	DUF1272 domain-containing protein	NA	NA	NA	NA	NA
3300491:3300505	attL	TGGCTGGCGTTCTTT	NA	NA	NA	NA
QBH38915.1|3300643_3300967_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
QBH38916.1|3300959_3301352_+	amino acid-binding protein	NA	NA	NA	NA	NA
QBH38917.1|3301348_3302062_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
QBH38918.1|3302334_3302487_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.0	3.8e-18
QBH38919.1|3302641_3304138_-|tail	tail fiber domain-containing protein	tail	A0A0P0IDN1	Klebsiella_phage	63.7	1.4e-125
QBH38920.1|3304206_3316911_-	DUF1983 domain-containing protein	NA	Q6UAW1	Klebsiella_phage	47.1	0.0e+00
QBH38921.1|3316973_3317567_-|tail	tail assembly protein	tail	K7PHE5	Enterobacteria_phage	76.6	8.0e-80
QBH38922.1|3317593_3318016_-	hypothetical protein	NA	J9Q806	Salmonella_phage	50.0	5.9e-29
QBH38923.1|3318057_3318768_-	peptidase P60	NA	Q6UAW4	Klebsiella_phage	90.3	1.9e-136
QBH38924.1|3318769_3319525_-|tail	phage minor tail protein L	tail	Q6UAW5	Klebsiella_phage	80.5	4.6e-125
QBH38925.1|3319521_3319860_-|tail	phage tail protein	tail	Q6UAW6	Klebsiella_phage	88.4	1.4e-57
QBH38926.1|3319859_3323195_-|tail	phage tail tape measure protein	tail	Q6UAW7	Klebsiella_phage	88.3	0.0e+00
QBH41008.1|3323194_3323413_-	hypothetical protein	NA	Q6UAW9	Klebsiella_phage	90.5	5.4e-34
QBH38927.1|3323427_3323793_-|tail	phage tail protein	tail	Q6UAW8	Klebsiella_phage	89.3	1.6e-51
QBH38928.1|3323850_3324312_-|tail	phage tail protein	tail	Q6UAX0	Klebsiella_phage	83.7	7.8e-67
QBH38929.1|3324343_3324745_-	hypothetical protein	NA	Q6UAX1	Klebsiella_phage	94.0	2.3e-62
QBH38930.1|3324741_3325131_-	hypothetical protein	NA	Q6UAX2	Klebsiella_phage	86.0	9.6e-58
QBH38931.1|3325111_3325450_-|head,tail	head-tail adaptor protein	head,tail	Q6UAX3	Klebsiella_phage	90.2	2.8e-53
QBH38932.1|3325446_3325764_-|head,tail	phage gp6-like head-tail connector protein	head,tail	Q6UAX4	Klebsiella_phage	89.8	1.5e-45
QBH38933.1|3325744_3326005_-	hypothetical protein	NA	Q6UAX5	Klebsiella_phage	60.5	7.4e-22
QBH38934.1|3326063_3327350_-|capsid	phage major capsid protein	capsid	Q6UAX6	Klebsiella_phage	89.0	9.8e-216
QBH38935.1|3327427_3328348_-	S49 family peptidase	NA	Q6UAX7	Klebsiella_phage	88.2	9.6e-149
QBH38936.1|3328384_3329644_-|portal	phage portal protein	portal	Q6UAX8	Klebsiella_phage	89.8	1.8e-222
QBH38937.1|3329643_3329823_-	hypothetical protein	NA	Q6UAX9	Klebsiella_phage	57.6	3.1e-11
QBH38938.1|3329816_3331538_-|terminase	terminase large subunit	terminase	Q7Y413	Yersinia_phage	57.4	1.5e-190
QBH38939.1|3331537_3331972_-|terminase	phage terminase small subunit P27 family	terminase	A0A1J0GV10	Halomonas_phage	61.9	9.4e-30
QBH38940.1|3332220_3332652_-	hypothetical protein	NA	Q6UAS0	Klebsiella_phage	61.6	1.8e-41
QBH38941.1|3332648_3332972_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38942.1|3332923_3333286_-	HNH endonuclease	NA	Q6UAS2	Klebsiella_phage	83.3	1.2e-57
QBH38943.1|3333612_3333837_+	hypothetical protein	NA	NA	NA	NA	NA
QBH38944.1|3333875_3334313_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38945.1|3335262_3335613_-	hypothetical protein	NA	R9TPM9	Aeromonas_phage	38.1	7.9e-11
QBH38946.1|3335609_3336107_-	lysozyme	NA	A0A1V0E5Q7	Salmonella_phage	84.6	1.1e-77
QBH38947.1|3336106_3336322_-|holin	holin	holin	A5LH82	Enterobacteria_phage	88.7	2.7e-30
QBH38948.1|3338126_3338330_+	hypothetical protein	NA	NA	NA	NA	NA
QBH38949.1|3338573_3339176_-	hypothetical protein	NA	H9C175	Pectobacterium_phage	68.6	1.1e-76
QBH38950.1|3339192_3340224_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	49.6	4.7e-96
QBH38951.1|3340223_3340427_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38952.1|3340423_3340816_-	DNA-binding protein	NA	K7PHB4	Enterobacterial_phage	36.6	8.0e-12
QBH38953.1|3340856_3341147_-	hypothetical protein	NA	H6WRY6	Salmonella_phage	56.9	8.0e-17
QBH38954.1|3341158_3341392_-	DinI family protein	NA	K7PM44	Enterobacteria_phage	71.1	3.7e-25
QBH41009.1|3341470_3342955_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBH38955.1|3342954_3343206_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38956.1|3343795_3345157_-	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA	NA
QBH38957.1|3345330_3346044_-	hypothetical protein	NA	NA	NA	NA	NA
QBH41010.1|3346395_3347265_+	hypothetical protein	NA	NA	NA	NA	NA
QBH38958.1|3347353_3348745_+	hypothetical protein	NA	NA	NA	NA	NA
QBH38959.1|3349093_3349534_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38960.1|3349547_3350012_-	replication protein	NA	A0A0U2JGJ0	Escherichia_phage	72.2	4.1e-63
QBH41011.1|3350004_3351009_-	DNA-binding protein	NA	A0A0U2RT81	Escherichia_phage	40.0	1.0e-31
QBH38961.1|3351068_3351623_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38962.1|3351625_3351850_-	Cro/Cl family transcriptional regulator	NA	H6WRX5	Salmonella_phage	62.5	1.3e-19
QBH38963.1|3351938_3352376_+	helix-turn-helix domain-containing protein	NA	H6WRX4	Salmonella_phage	62.2	1.3e-39
QBH41012.1|3352697_3353012_-	hypothetical protein	NA	NA	NA	NA	NA
QBH38964.1|3353174_3353393_+	hypothetical protein	NA	NA	NA	NA	NA
QBH38965.1|3353402_3353597_+	DUF1482 family protein	NA	NA	NA	NA	NA
QBH38966.1|3353639_3353984_+	transcriptional regulator	NA	NA	NA	NA	NA
QBH38967.1|3354125_3356264_+	exonuclease	NA	S4TNL0	Salmonella_phage	42.7	5.6e-99
QBH38968.1|3356316_3356562_+	excisionase	NA	NA	NA	NA	NA
QBH38969.1|3356542_3357670_+|integrase	integrase	integrase	O21925	Phage_21	58.4	4.4e-119
QBH38970.1|3357787_3359038_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.1e-19
QBH38971.1|3359278_3359929_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
3359378:3359392	attR	AAAGAACGCCAGCCA	NA	NA	NA	NA
QBH38972.1|3359945_3360404_+	NUDIX hydrolase	NA	NA	NA	NA	NA
QBH38973.1|3360460_3361567_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
>prophage 10
CP036300	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 chromosome, complete genome	5459441	3471142	3527301	5459441	capsid,tail,integrase,protease,terminase,plate,head,portal	Enterobacteria_phage(40.0%)	63	3469302:3469322	3503826:3503846
3469302:3469322	attL	AACCCGGAGTGCTCCGGGTTT	NA	NA	NA	NA
QBH39074.1|3471142_3472297_-	phage late control D family protein	NA	B9A7A9	Serratia_phage	77.2	6.6e-171
QBH39075.1|3472448_3473630_+|tail	phage tail protein	tail	A0A0A7NV69	Enterobacteria_phage	69.4	8.0e-156
QBH39076.1|3473630_3474146_+|tail	phage major tail tube protein	tail	A0A0A7NPV8	Enterobacteria_phage	70.0	2.6e-63
QBH39077.1|3474197_3474497_+|tail	phage tail assembly protein	tail	B9A7B2	Serratia_phage	72.7	2.9e-30
QBH41021.1|3474517_3474670_+|tail	GpE family phage tail protein	tail	O80316	Escherichia_phage	71.4	1.5e-11
QBH39078.1|3474659_3477395_+|tail	phage tail tape measure protein	tail	B9A7B3	Serratia_phage	80.6	2.0e-242
QBH39079.1|3477406_3477895_+|tail	phage tail protein	tail	A0A0A7NV65	Enterobacteria_phage	59.9	2.9e-51
QBH39080.1|3477992_3479069_-|tail	phage tail protein	tail	Q37842	Escherichia_phage	48.3	2.3e-32
QBH39081.1|3479080_3479824_-	hypothetical protein	NA	NA	NA	NA	NA
QBH39082.1|3479829_3482094_-	hypothetical protein	NA	B5TAB2	Burkholderia_phage	39.7	5.7e-102
QBH39083.1|3482095_3482698_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	44.8	1.8e-42
QBH39084.1|3482690_3483590_-|plate	baseplate assembly protein	plate	A0A0A7NPY5	Enterobacteria_phage	62.2	6.2e-92
QBH39085.1|3483576_3483945_-|plate	baseplate assembly protein	plate	A0A0A7NQ90	Enterobacteria_phage	57.4	2.3e-29
QBH39086.1|3483941_3484526_-|plate	phage baseplate assembly protein V	plate	A0A0A7NRZ3	Enterobacteria_phage	61.4	8.7e-63
QBH39087.1|3484525_3485167_-	phage virion morphogenesis protein	NA	A0A0M4RCU1	Salmonella_phage	49.8	1.4e-45
QBH39088.1|3485163_3485622_-|tail	phage tail protein	tail	A0A0A7NPU6	Enterobacteria_phage	46.8	3.1e-31
QBH39089.1|3485618_3485882_-	peptidase	NA	NA	NA	NA	NA
QBH39090.1|3485766_3486162_-	DUF2570 domain-containing protein	NA	NA	NA	NA	NA
QBH39091.1|3486158_3486710_-	lysozyme	NA	Q1I0Z1	Pasteurella_virus	42.5	6.8e-33
QBH39092.1|3486706_3486988_-	hypothetical protein	NA	NA	NA	NA	NA
QBH39093.1|3486978_3487179_-|tail	phage tail protein	tail	A0A0A7NV57	Enterobacteria_phage	64.6	3.0e-15
QBH39094.1|3487178_3487676_-|head	head completion/stabilization protein	head	B9A7B7	Serratia_phage	69.7	2.2e-59
QBH39095.1|3487778_3488639_-|terminase	terminase	terminase	B9A7B6	Serratia_phage	68.4	1.0e-83
QBH39096.1|3488685_3489735_-|capsid	phage major capsid protein, P2 family	capsid	A0A0M3ULA3	Salmonella_phage	53.9	2.3e-106
QBH39097.1|3489758_3490592_-|capsid	GPO family capsid scaffolding protein	capsid	A0A0A7NRY7	Enterobacteria_phage	65.3	6.5e-96
QBH39098.1|3490752_3492474_+	oxidoreductase	NA	A0A0A7NV54	Enterobacteria_phage	66.5	4.3e-227
QBH41022.1|3492494_3493529_+|portal	phage portal protein	portal	A0A0A7NPT9	Enterobacteria_phage	68.6	2.0e-139
QBH41023.1|3493936_3494251_-	hypothetical protein	NA	NA	NA	NA	NA
QBH39099.1|3494523_3494931_-	hypothetical protein	NA	NA	NA	NA	NA
QBH39100.1|3495102_3497697_-	replication endonuclease	NA	A0A0M4RTM8	Salmonella_phage	51.7	1.1e-192
QBH39101.1|3497689_3498706_-	DNA cytosine methyltransferase	NA	Q6J1P4	Burkholderia_virus	54.8	2.4e-92
QBH39102.1|3499007_3499976_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4QWR0	Salmonella_phage	49.1	3.1e-73
QBH39103.1|3499984_3500563_-	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	39.5	2.7e-32
QBH39104.1|3500559_3500784_-	hypothetical protein	NA	NA	NA	NA	NA
QBH39105.1|3500851_3501124_-	hypothetical protein	NA	NA	NA	NA	NA
QBH39106.1|3501139_3501526_-	hypothetical protein	NA	NA	NA	NA	NA
QBH41024.1|3501542_3501740_-	DUF4761 domain-containing protein	NA	NA	NA	NA	NA
QBH39107.1|3501931_3502264_-	hypothetical protein	NA	NA	NA	NA	NA
QBH39108.1|3502358_3502661_+	XRE family transcriptional regulator	NA	Q1JS63	Enterobacteria_phage	61.0	2.6e-26
QBH39109.1|3502748_3503756_+|integrase	integrase	integrase	A0A0M4RTQ0	Salmonella_phage	52.1	7.6e-99
QBH39110.1|3503852_3505100_-	bifunctional glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA	NA
3503826:3503846	attR	AACCCGGAGTGCTCCGGGTTT	NA	NA	NA	NA
QBH39111.1|3505252_3505702_+	transcriptional regulator	NA	NA	NA	NA	NA
QBH39112.1|3505817_3506606_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
QBH39113.1|3506626_3506848_-	hypothetical protein	NA	NA	NA	NA	NA
QBH39114.1|3507104_3507227_+	hypothetical protein	NA	NA	NA	NA	NA
QBH39115.1|3507345_3508737_-	APC family permease	NA	NA	NA	NA	NA
QBH39116.1|3508726_3508918_-	hypothetical protein	NA	NA	NA	NA	NA
QBH39117.1|3509090_3510512_-	glutamine synthetase	NA	NA	NA	NA	NA
QBH39118.1|3510725_3511490_+	gamma-glutamyl-gamma-aminobutyrate hydrolase	NA	NA	NA	NA	NA
QBH39119.1|3511515_3512073_+	HTH-type transcriptional regulator PuuR	NA	NA	NA	NA	NA
QBH41025.1|3512393_3513881_+	aldehyde dehydrogenase PuuC	NA	NA	NA	NA	NA
QBH39120.1|3513883_3515164_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
QBH41026.1|3515160_3516102_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBH39121.1|3516205_3517291_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
QBH39122.1|3517795_3519403_+	BCCT family transporter	NA	NA	NA	NA	NA
QBH39123.1|3519439_3520564_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
QBH39124.1|3520582_3522031_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
QBH39125.1|3522088_3523054_+	oxidoreductase	NA	NA	NA	NA	NA
QBH39126.1|3523223_3523412_-	hypothetical protein	NA	NA	NA	NA	NA
QBH41027.1|3523476_3523764_+	hypothetical protein	NA	NA	NA	NA	NA
QBH39127.1|3523742_3524363_+	EAL domain-containing protein	NA	NA	NA	NA	NA
QBH39128.1|3524719_3526372_-	oligopeptide ABC transporter substrate-binding protein OppA	NA	NA	NA	NA	NA
QBH39129.1|3526641_3527301_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	46.6	3.2e-37
>prophage 11
CP036300	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 chromosome, complete genome	5459441	3612070	3699020	5459441	capsid,tail,integrase,tRNA,protease,terminase,transposase,lysis,plate,head,portal	Salmonella_phage(49.02%)	87	3667596:3667614	3699095:3699113
QBH39199.1|3612070_3613363_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.7	7.3e-94
QBH39200.1|3613453_3614797_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	40.8	7.3e-81
QBH39201.1|3614805_3615417_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
QBH39202.1|3615539_3619793_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.2	5.2e-88
QBH39203.1|3619928_3620423_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA	NA
QBH39204.1|3620928_3621924_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.0	3.3e-62
QBH39205.1|3622038_3623805_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	W8CYL7	Bacillus_phage	25.9	2.3e-21
QBH39206.1|3623805_3625527_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	34.3	1.5e-14
QBH39207.1|3625571_3626273_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
QBH39208.1|3626626_3626845_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
QBH39209.1|3626965_3629245_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.0	1.6e-165
QBH39210.1|3629275_3629593_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	2.0e-13
QBH39211.1|3629918_3630140_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	1.3e-16
QBH39212.1|3630216_3632157_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	40.5	1.9e-37
QBH39213.1|3632153_3633269_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	52.7	1.3e-06
QBH39214.1|3633415_3635074_-	ATP-dependent endonuclease	NA	NA	NA	NA	NA
QBH39215.1|3635493_3636189_+	aquaporin Z	NA	NA	NA	NA	NA
QBH39216.1|3636304_3637204_+	lysine exporter LysO family protein	NA	NA	NA	NA	NA
QBH39217.1|3637347_3639000_+	hydroxylamine reductase	NA	NA	NA	NA	NA
QBH39218.1|3639010_3639979_+	NADH oxidoreductase	NA	NA	NA	NA	NA
QBH39219.1|3639929_3640133_+	hypothetical protein	NA	NA	NA	NA	NA
QBH39220.1|3640190_3640625_-	DoxX family protein	NA	NA	NA	NA	NA
QBH39221.1|3640776_3642495_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA	NA
QBH39222.1|3642533_3643535_+	low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
QBH39223.1|3643545_3644988_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
QBH39224.1|3645075_3646089_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
QBH39225.1|3646085_3646916_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	31.6	4.1e-05
QBH39226.1|3646947_3648087_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
QBH39227.1|3648139_3648319_+	hypothetical protein	NA	NA	NA	NA	NA
QBH39228.1|3648964_3649480_+	lipoprotein	NA	NA	NA	NA	NA
QBH39229.1|3649706_3650435_+	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	37.1	1.2e-29
QBH39230.1|3650455_3651187_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBH39231.1|3651193_3651910_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA	NA
QBH39232.1|3651909_3652578_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA	NA
QBH39233.1|3652761_3653493_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBH39234.1|3653535_3655008_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	31.8	7.9e-28
QBH39235.1|3655004_3655721_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.9	2.1e-34
QBH39236.1|3655799_3656927_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	A0A2K5B251	Erysipelothrix_phage	25.6	1.3e-19
QBH39237.1|3656968_3657457_-	DUF2593 family protein	NA	NA	NA	NA	NA
QBH39238.1|3657514_3658360_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA	NA
QBH39239.1|3658356_3659310_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA	NA
QBH41030.1|3659320_3660454_-	putrescine ABC transporter ATP-binding subunit PotG	NA	G3M9Y6	Bacillus_virus	34.9	2.2e-30
QBH39240.1|3660617_3661730_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA	NA
QBH39241.1|3662078_3662558_-	YbjN domain-containing protein	NA	NA	NA	NA	NA
QBH39242.1|3662646_3663549_-	30S ribosomal protein S6--L-glutamate ligase	NA	A0A1D7SR78	Cyanophage	35.3	2.0e-34
QBH39243.1|3664370_3664658_-	DUF1418 family protein	NA	NA	NA	NA	NA
QBH39244.1|3664860_3665124_+	GrxA family glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	73.1	1.6e-27
QBH39245.1|3665130_3665514_-	hypothetical protein	NA	NA	NA	NA	NA
QBH39246.1|3665780_3667466_+	transporter	NA	NA	NA	NA	NA
3667596:3667614	attL	ATGGGTTTTTTGTTGCCTG	NA	NA	NA	NA
QBH39247.1|3667685_3667904_-	transcriptional regulator	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
QBH39248.1|3667995_3669096_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	87.4	4.9e-176
QBH39249.1|3669092_3669578_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	75.6	7.2e-63
QBH39250.1|3669574_3672202_-|tail	phage tail tape measure protein	tail	E5FFG5	Burkholderia_phage	42.0	5.6e-117
QBH39251.1|3672194_3672314_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.2e-13
QBH39252.1|3672328_3672628_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	79.0	3.7e-33
QBH39253.1|3672680_3673196_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	85.4	1.3e-81
QBH39254.1|3673205_3674378_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	93.3	1.9e-210
QBH39255.1|3674516_3675593_-|tail	phage tail protein	tail	Q37842	Escherichia_phage	44.8	1.2e-25
QBH39256.1|3675622_3675826_-	hypothetical protein	NA	NA	NA	NA	NA
QBH39257.1|3675822_3676554_-	hypothetical protein	NA	NA	NA	NA	NA
QBH39258.1|3676557_3679509_-	hypothetical protein	NA	A0A2H4N7A3	Pectobacterium_phage	50.9	1.2e-06
QBH39259.1|3679510_3680110_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	60.5	1.3e-58
QBH39260.1|3680102_3681011_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	66.9	7.6e-106
QBH39261.1|3680997_3681360_-|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	83.9	4.9e-48
QBH39262.1|3681356_3681929_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	72.3	4.7e-77
QBH39263.1|3682288_3683269_-|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
QBH39264.1|3683406_3683916_+	hypothetical protein	NA	NA	NA	NA	NA
QBH39265.1|3683912_3684359_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	71.2	2.2e-50
QBH39266.1|3684351_3684783_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	82.5	9.9e-64
QBH39267.1|3684878_3685307_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	77.9	9.6e-51
QBH39268.1|3685303_3685687_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	42.0	2.1e-17
QBH39269.1|3685691_3686201_-	lysozyme	NA	E5G6N1	Salmonella_phage	83.4	2.1e-81
QBH39270.1|3686181_3686397_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	90.1	3.6e-30
QBH39271.1|3686400_3686604_-|tail	phage tail protein	tail	A0A1S6KZY4	Salmonella_phage	88.1	1.3e-29
QBH39272.1|3686603_3687068_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	8.4e-77
QBH39273.1|3687163_3687814_-	hypothetical protein	NA	E5G6M7	Salmonella_phage	96.3	8.7e-112
QBH39274.1|3687817_3688876_-|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.1e-180
QBH39275.1|3688892_3689726_-|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	88.8	6.3e-123
QBH39276.1|3689868_3691635_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.0	0.0e+00
QBH39277.1|3691634_3692660_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.7	7.6e-171
QBH39278.1|3692721_3694464_-	hypothetical protein	NA	NA	NA	NA	NA
QBH39279.1|3694739_3695417_-	hypothetical protein	NA	NA	NA	NA	NA
QBH39280.1|3695531_3695837_-	DinI family protein	NA	E5G6M1	Salmonella_phage	100.0	4.7e-36
QBH41032.1|3695775_3695964_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	98.4	5.5e-27
QBH41031.1|3696064_3697549_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBH39281.1|3697548_3697800_-	hypothetical protein	NA	NA	NA	NA	NA
QBH39282.1|3697967_3699020_+|integrase	site-specific integrase	integrase	A0A218M4I3	Erwinia_phage	57.0	1.0e-106
3699095:3699113	attR	ATGGGTTTTTTGTTGCCTG	NA	NA	NA	NA
>prophage 12
CP036300	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 chromosome, complete genome	5459441	4350803	4362456	5459441		Enterobacteria_phage(70.0%)	13	NA	NA
QBH39864.1|4350803_4351907_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.5	4.8e-62
QBH39865.1|4351917_4353171_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	44.9	8.9e-89
QBH39866.1|4353523_4354714_+	DUF4102 domain-containing protein	NA	Q7M297	Enterobacteria_phage	62.7	6.4e-145
QBH39867.1|4354701_4355652_+	cobyrinic acid a,c-diamide synthase	NA	A0A1X9IGI7	Lactococcus_phage	27.1	1.2e-13
QBH39868.1|4355651_4356077_+	hypothetical protein	NA	NA	NA	NA	NA
QBH39869.1|4356644_4357211_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	63.8	9.7e-59
QBH39870.1|4357228_4357474_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	56.8	5.5e-19
QBH39871.1|4357470_4358208_-	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	59.4	1.9e-70
QBH39872.1|4358749_4359016_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	71.6	2.6e-30
QBH39873.1|4359012_4359570_+	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	70.4	1.8e-33
QBH39874.1|4359566_4359794_+	hypothetical protein	NA	NA	NA	NA	NA
QBH39875.1|4359790_4360111_+	hypothetical protein	NA	NA	NA	NA	NA
QBH39876.1|4360122_4362456_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	82.2	0.0e+00
>prophage 13
CP036300	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 chromosome, complete genome	5459441	4830693	4839506	5459441	transposase	Enterobacteria_phage(83.33%)	9	NA	NA
QBH40278.1|4830693_4833027_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	83.9	0.0e+00
QBH40279.1|4833041_4833362_-	hypothetical protein	NA	NA	NA	NA	NA
QBH40280.1|4833358_4833586_-	hypothetical protein	NA	NA	NA	NA	NA
QBH40281.1|4833582_4834131_-	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	69.4	1.1e-30
QBH40282.1|4834954_4835692_+	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	59.4	1.1e-70
QBH40283.1|4835688_4835934_+	hypothetical protein	NA	Q7M294	Enterobacteria_phage	56.8	5.5e-19
QBH40284.1|4835951_4836518_+	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	63.8	9.7e-59
QBH40285.1|4837258_4838338_+	hypothetical protein	NA	NA	NA	NA	NA
QBH40286.1|4838525_4839506_+|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
>prophage 1
CP036302	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 plasmid p1_015093, complete sequence	205652	1727	66699	205652	transposase,protease,integrase	uncultured_Caudovirales_phage(26.32%)	58	NA	NA
QBH41300.1|1727_2468_-|integrase	site-specific integrase	integrase	I3WFA4	Macacine_betaherpesvirus	58.6	5.4e-25
QBH41301.1|3611_4559_+	sensor domain-containing diguanylate cyclase	NA	G3MA91	Bacillus_virus	30.6	1.8e-12
QBH41495.1|4585_4897_-	EAL domain-containing protein	NA	NA	NA	NA	NA
QBH41302.1|4961_5885_+|transposase	IS5 family transposase	transposase	Q9MCT5	Escherichia_phage	98.4	2.1e-175
QBH41303.1|6557_6815_-	hypothetical protein	NA	NA	NA	NA	NA
QBH41304.1|7434_8871_+	EAL domain-containing protein	NA	NA	NA	NA	NA
QBH41305.1|9853_11131_-	DUF2254 domain-containing protein	NA	NA	NA	NA	NA
QBH41306.1|11193_13191_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	25.9	9.7e-21
QBH41496.1|14230_15438_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	63.2	1.7e-100
QBH41307.1|16866_17298_-	silver-binding protein SilE	NA	NA	NA	NA	NA
QBH41308.1|17548_19024_-	copper/silver sensor histidine kinase SilS	NA	W8CYF6	Bacillus_phage	30.1	1.0e-27
QBH41497.1|19016_19697_-	copper/silver response regulator transcription factor SilR	NA	W8CYM9	Bacillus_phage	35.6	2.1e-31
QBH41309.1|19886_21272_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA	NA
QBH41310.1|21300_21654_+	copper ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBH41311.1|21767_23060_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA	NA
QBH41312.1|23070_26217_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	NA	S5VTK5	Leptospira_phage	22.5	4.0e-61
QBH41313.1|26303_26744_+	hypothetical protein	NA	NA	NA	NA	NA
QBH41314.1|26870_29318_+	Ag(+)-translocating P-type ATPase SilP	NA	A0A218MNH6	uncultured_virus	35.8	7.6e-84
QBH41315.1|29358_29556_+	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
QBH41316.1|29589_30327_-	peptidase M23	NA	A0A2H4JAF5	uncultured_Caudovirales_phage	32.5	1.2e-11
QBH41317.1|30615_31065_-	copper resistance protein	NA	NA	NA	NA	NA
QBH41318.1|31298_33116_+	multicopper oxidase PcoA	NA	NA	NA	NA	NA
QBH41498.1|33115_34012_+	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA	NA
QBH41319.1|34051_34432_+	copper resistance system metallochaperone PcoC	NA	NA	NA	NA	NA
QBH41320.1|34436_35366_+	copper resistance inner membrane protein PcoD	NA	NA	NA	NA	NA
QBH41321.1|35420_36101_+	copper response regulator transcription factor PcoR	NA	W8CYM9	Bacillus_phage	34.4	8.7e-30
QBH41322.1|36097_37498_+	copper resistance membrane spanning protein PcoS	NA	W8CYF6	Bacillus_phage	26.3	4.1e-18
QBH41323.1|37714_38149_+	copper resistance system metallochaperone PcoE	NA	NA	NA	NA	NA
QBH41324.1|38380_38560_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
QBH41325.1|40302_40812_+	porin	NA	NA	NA	NA	NA
QBH41326.1|40861_41359_-	N-acetyltransferase family protein	NA	NA	NA	NA	NA
QBH41327.1|41690_42017_+	transcriptional regulator	NA	NA	NA	NA	NA
QBH41499.1|42016_42727_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	77.0	2.9e-92
QBH41328.1|42735_43281_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
QBH41329.1|43356_43719_+	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA	NA
QBH41330.1|45615_46152_+	N-acetyltransferase family protein	NA	NA	NA	NA	NA
QBH41331.1|46184_46610_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	72.9	2.3e-52
QBH41332.1|46622_47912_-	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	74.0	1.9e-171
QBH41333.1|47959_49711_-	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
QBH41334.1|49728_50091_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA	NA
QBH41335.1|50140_50491_-	transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	50.9	1.4e-23
QBH41336.1|50848_51118_+	hypothetical protein	NA	NA	NA	NA	NA
QBH41337.1|51105_51681_+	hypothetical protein	NA	NA	NA	NA	NA
QBH41338.1|51711_52206_+	DNA-binding protein	NA	NA	NA	NA	NA
QBH41339.1|52249_52618_+	hypothetical protein	NA	NA	NA	NA	NA
QBH41340.1|52651_52855_+	hemolysin expression modulator Hha	NA	NA	NA	NA	NA
QBH41341.1|52903_53161_+	hypothetical protein	NA	NA	NA	NA	NA
QBH41342.1|53236_53491_+	hypothetical protein	NA	NA	NA	NA	NA
QBH41343.1|53666_53933_+	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
QBH41344.1|53920_54403_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBH41345.1|54614_55961_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
QBH41346.1|57803_58766_-|protease	Zn-dependent protease	protease	NA	NA	NA	NA
QBH41347.1|58752_59502_-	diguanylate cyclase	NA	NA	NA	NA	NA
QBH41348.1|59739_59937_-	hypothetical protein	NA	NA	NA	NA	NA
QBH41349.1|59936_62732_-	heat shock survival AAA family ATPase ClpK	NA	K4FB40	Cronobacter_phage	41.0	5.2e-129
QBH41350.1|62846_63416_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
QBH41500.1|63450_63732_-	DNA-binding protein	NA	A0A1B1IUF9	uncultured_Mediterranean_phage	38.2	5.2e-05
QBH41351.1|65718_66699_+|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	99.1	8.9e-185
>prophage 2
CP036302	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 plasmid p1_015093, complete sequence	205652	73168	96732	205652	transposase,protease,integrase	Escherichia_phage(50.0%)	27	75140:75199	85317:86654
QBH41358.1|73168_73873_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
75140:75199	attL	TTAATGAGATGGTCACTCCCTCCTTCCCAGTACTATGCTGAGGACAGGCTTTCATTCGGA	NA	NA	NA	NA
QBH41359.1|75207_76212_+|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
QBH41360.1|76503_77172_+|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	99.5	1.9e-130
QBH41361.1|77361_78177_-	aminoglycoside O-phosphotransferase APH(3')-Ia	NA	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	100.0	6.1e-163
QBH41362.1|78327_79032_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBH41363.1|79523_80537_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
QBH41364.1|80681_81179_+	trimethoprim-resistant dihydrofolate reductase DfrA12	NA	A0A0A0PL85	Bacillus_phage	40.9	7.5e-23
QBH41365.1|81290_81581_+	DUF1010 domain-containing protein	NA	NA	NA	NA	NA
QBH41366.1|81586_82378_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
QBH41367.1|82541_82889_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
QBH41368.1|82882_83722_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
QBH41369.1|83651_83831_-	hypothetical protein	NA	NA	NA	NA	NA
QBH41370.1|83849_84122_+	hypothetical protein	NA	NA	NA	NA	NA
QBH41371.1|84303_85308_-|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
QBH41372.1|85535_86741_+	chromate efflux transporter	NA	NA	NA	NA	NA
85317:86654	attR	TCCGAATGAAAGCCTGTCCTCAGCATAGTACTGGGAAGGAGGGAGTGACCATCTCATTAAATAAAGCACGCTAAGCCGTAAGTAAGCGTGCTCCTGTGAAAGCCACAGCTAAAACTGCGTAGTACACATAGAGGTATTTTTTTCTAGATTTATATCGAATTTCGTTATCGAATTTCGCTTATTATTGATCAACTCGTTGCAGATCATGAAGGCGAAAGTATGACGAATAACCCTACCGATGACAGCAGACCATGGTCGGTCTTTCTTATTTTTCTGCGGCTTGGATTGACATCTTTTGGCGGCCCCATTGCGCACTTGGGCTACTTCCGCGCCGAATTTGTCACACGGCGGCGCTGGCTCTCCGAACGGAGCTATGCTGACTTGGTCGCGCTTTGTCAGTTCTTGCCAGGGCCTGCAAGCAGCCAGGTCGGCATAGCGGTAGGACTGTCTCGGGCTGGATACAGCGGGGCGCTGGCTGCTTGGGCTGGCTTCACGCTGCCGTCTGCCATAGCCTTGATCCTTTTTGCGCTCGGCATCTCCAGCTATGGCGATTACGTCTCGCAGGGCGCGTTGCATGGCTTAAAAGTGGTGGCTGTGGCCGTGGTCGCTCAAGCAGTATGGGGCATGGCGCGTAACCTATGCACGGATGGGCTGCGAGTCACCATCATGGCAATTGCTACCTGCGTCGTTTTACTTGTGCCGTCCGCGTGGGGACAGGTTGGCGTGATTGCTATCGCAGGCATCGCAGGCCGGTTATTGTTCAAGCCAGCGAAAGTTGTTGAGCATGACCCCCTACCTATCACGGTCAGTCACCGGGCCGGCGTGCTTTGGCTCTCGCTGTTCTTTGTCTTGCTGATTGGCCTGCCGGTGTTGGCCGAACTGATGCCAAGTCAAACCATGGCAATGGTGGATTCCTTCTATCGTGTCGGATCACTGGTGTTCGGCGGTGGTCACGTTGTGCTGCCATTACTGCAAGCCGAAGTGGTGCCCTCCGGCTGGGTCAACAATGAATCCTTTCTCGCGGGGTACGGGGCAGCTCAAGCGGTGCCCGGCCCTTTGTTCACGTTCGCCGCGTTTCTTGGTGCCTCGATGAACACCGCCCCGTCGGGCTGGATCGGCGGCATTGTGTGTCTGCTGGCTATCTTCGCGCCCTCGTTCTTGCTGGTCGTCGGATCAATGCCATTTTGGGAGCGTTTGCGCCGCAATACAGGCATCCAAGCTGCGCTGGCCGGGATCAATGCCGCTGTAGTCGGCTTGCTGCTGGCCGCGCTGTATCAGCCTGTATGGACTAGCGCCATCTTTCAGCCGCAAGACTTCGGCTTGGCATTAGTTGCCCTT	NA	NA	NA	NA
QBH41373.1|86751_87057_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
QBH41374.1|87072_87255_-	resolvase	NA	NA	NA	NA	NA
QBH41375.1|87283_88048_+|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
QBH41376.1|88238_88595_-	hypothetical protein	NA	NA	NA	NA	NA
QBH41377.1|88540_89125_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBH41378.1|89124_90363_-	MFS transporter	NA	NA	NA	NA	NA
QBH41379.1|90359_91265_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
QBH41380.1|91386_92091_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
QBH41381.1|92360_95258_+|transposase	Tn3-like element Tn5403 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	37.8	4.2e-182
QBH41382.1|95394_95727_-	mRNA interferase PemK	NA	NA	NA	NA	NA
QBH41383.1|95728_95986_-	antitoxin PemI	NA	NA	NA	NA	NA
QBH41384.1|96078_96732_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 1
CP036301	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 plasmid pKPC2_015093, complete sequence	154724	1796	21998	154724	transposase,protease	Escherichia_phage(53.85%)	18	NA	NA
QBH41110.1|1796_2450_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QBH41111.1|2542_2800_+	antitoxin PemI	NA	NA	NA	NA	NA
QBH41112.1|2801_3134_+	mRNA interferase PemK	NA	NA	NA	NA	NA
QBH41113.1|4316_5021_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBH41114.1|5272_5977_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBH41115.1|7245_8127_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	NA	A0A1B0VBP7	Salmonella_phage	52.2	2.2e-73
QBH41116.1|8402_9383_-|transposase	IS481-like element ISKpn27 family transposase	transposase	A8RHK4	Spiroplasma_virus	27.4	2.9e-10
QBH41117.1|9505_9979_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	99.3	3.3e-76
QBH41118.1|10018_10723_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBH41119.1|11233_12109_+	class A extended-spectrum beta-lactamase CTX-M-65	NA	A0A1B0VBP7	Salmonella_phage	98.9	6.8e-152
QBH41120.1|12188_13112_+|transposase	IS5 family transposase	transposase	Q9MCT5	Escherichia_phage	99.7	2.2e-177
QBH41121.1|14862_15567_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBH41122.1|16677_17382_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBH41123.1|18059_18248_-	hypothetical protein	NA	NA	NA	NA	NA
QBH41279.1|18339_18876_+	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	100.0	2.8e-84
QBH41124.1|19058_19919_+	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
QBH41125.1|20088_20844_+	16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1	NA	NA	NA	NA	NA
QBH41126.1|21293_21998_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
>prophage 2
CP036301	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 plasmid pKPC2_015093, complete sequence	154724	79076	92882	154724	transposase	Enterobacteria_phage(18.18%)	18	NA	NA
QBH41188.1|79076_80057_-|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
QBH41189.1|80570_80966_+	hypothetical protein	NA	NA	NA	NA	NA
QBH41190.1|80962_81574_+	DUF2913 family protein	NA	NA	NA	NA	NA
QBH41191.1|81570_82521_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	55.6	6.6e-76
QBH41192.1|82667_82868_-	hypothetical protein	NA	NA	NA	NA	NA
QBH41193.1|82921_83554_-	LacI family DNA-binding transcriptional regulator	NA	A0A1V0E035	Clostridioides_phage	31.9	2.5e-07
QBH41194.1|83916_85122_+	ParA family protein	NA	Q1MVJ3	Enterobacteria_phage	89.2	1.1e-205
QBH41195.1|85118_86090_+	ParB/RepB/Spo0J family partition protein	NA	Q1MVJ4	Enterobacteria_phage	68.9	1.4e-113
QBH41196.1|86225_87497_-	translesion error-prone DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	63.0	6.1e-154
QBH41197.1|87496_87919_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	51.5	3.1e-30
QBH41198.1|88098_88770_-	DNA breaking-rejoining protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.7	5.1e-83
QBH41199.1|89128_89806_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.9	1.6e-28
QBH41200.1|89805_90027_+	hypothetical protein	NA	NA	NA	NA	NA
QBH41201.1|90037_90457_+	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
QBH41202.1|90510_91290_+	hypothetical protein	NA	NA	NA	NA	NA
QBH41203.1|91694_92201_+	antirestriction protein ArdA	NA	A0A1I9S7Y0	Rhodococcus_phage	31.8	4.8e-09
QBH41204.1|92243_92435_+	hypothetical protein	NA	NA	NA	NA	NA
QBH41205.1|92621_92882_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	46.2	4.1e-12
>prophage 3
CP036301	Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 plasmid pKPC2_015093, complete sequence	154724	123399	134558	154724		Escherichia_phage(50.0%)	11	NA	NA
QBH41249.1|123399_124101_-	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.2	1.6e-26
QBH41250.1|124537_124768_-	hypothetical protein	NA	NA	NA	NA	NA
QBH41251.1|124830_125502_-	Mediator of plasmid stability	NA	NA	NA	NA	NA
QBH41252.1|125504_126476_-	StbA family protein	NA	A0A222YXF2	Escherichia_phage	46.8	1.1e-73
QBH41293.1|126724_128209_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBH41253.1|128208_128460_-	hypothetical protein	NA	NA	NA	NA	NA
QBH41254.1|128618_129050_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	53.3	2.1e-29
QBH41255.1|129049_130321_+	translesion error-prone DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	63.7	7.5e-152
QBH41256.1|130402_131380_-	ParB/RepB/Spo0J family partition protein	NA	Q38420	Escherichia_phage	53.8	1.4e-86
QBH41257.1|131376_132582_-	ParA family protein	NA	A0A077SL49	Escherichia_phage	69.3	5.3e-163
QBH41258.1|133691_134558_-	RepB family plasmid replication initiator protein	NA	A0A222YYK1	Escherichia_phage	31.1	1.5e-23
