assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002853715.1_ASM285371v1	CP024138	Escherichia coli strain 14EC020 chromosome, complete genome	1	1112469-1112926	1,1,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Unclear	GAGAGTTCCCCACGTCAGCGGGGATAAACCG,GAGTTCCCCACGTCAGCGGGGATAAACCG,GAGTTCCCCNCGNCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	31,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	6,7,7,6	7	Unclear	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA	NA|451aa|up_9|CP024138.1_1095412_1096765_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|447aa|up_8|CP024138.1_1096766_1098107_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|up_7|CP024138.1_1098127_1099468_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|919aa|up_6|CP024138.1_1099698_1102455_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_5|CP024138.1_1102511_1103813_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_4|CP024138.1_1103860_1106095_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_3|CP024138.1_1106190_1106982_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP024138.1_1107209_1108847_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP024138.1_1108933_1110232_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP024138.1_1111459_1112131_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|CP024138.1_1113563_1115042_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|CP024138.1_1115068_1116346_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|CP024138.1_1116664_1117450_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|CP024138.1_1117519_1118974_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|CP024138.1_1119067_1120405_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|CP024138.1_1120382_1121162_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|CP024138.1_1121158_1122019_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|CP024138.1_1122165_1122741_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|CP024138.1_1122757_1123018_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|CP024138.1_1123008_1124280_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_002853715.1_ASM285371v1	CP024138	Escherichia coli strain 14EC020 chromosome, complete genome	2	1138628-1139327	3,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,11	11	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA	NA|245aa|up_9|CP024138.1_1128623_1129358_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|CP024138.1_1129621_1129774_+	pfam01848, HOK_GEF, Hok/gef family	cas3|886aa|up_7|CP024138.1_1130011_1132669_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|CP024138.1_1132766_1134329_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|CP024138.1_1134325_1134862_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|CP024138.1_1134876_1135932_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP024138.1_1135942_1136689_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP024138.1_1136670_1137321_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|CP024138.1_1137317_1138241_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP024138.1_1138237_1138531_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP024138.1_1139408_1140446_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP024138.1_1140697_1141606_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP024138.1_1141607_1143035_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP024138.1_1143034_1143640_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP024138.1_1143689_1144013_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP024138.1_1144206_1144518_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP024138.1_1144536_1145247_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP024138.1_1145246_1145726_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP024138.1_1145722_1146772_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP024138.1_1146752_1147514_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_002853715.1_ASM285371v1	CP024138	Escherichia coli strain 14EC020 chromosome, complete genome	3	2332188-2332311	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA|75aa|down_7|CP024138.1_2340896_2341121_-,NA|30aa|down_8|CP024138.1_2341207_2341297_+	NA|471aa|up_9|CP024138.1_2321641_2323054_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|CP024138.1_2323610_2323820_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|CP024138.1_2324275_2324902_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|CP024138.1_2324922_2327025_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|CP024138.1_2327028_2327676_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|CP024138.1_2327739_2328408_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|CP024138.1_2328404_2329190_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|CP024138.1_2329193_2330006_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|537aa|up_1|CP024138.1_2330011_2331622_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP024138.1_2331747_2332053_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP024138.1_2332625_2333882_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP024138.1_2333922_2335296_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP024138.1_2335510_2336152_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP024138.1_2336191_2337340_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP024138.1_2337630_2338842_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP024138.1_2338954_2339887_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP024138.1_2339883_2340909_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|CP024138.1_2340896_2341121_-	NA	NA|30aa|down_8|CP024138.1_2341207_2341297_+	NA	NA|390aa|down_9|CP024138.1_2341462_2342632_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCA_002853715.1_ASM285371v1	CP024138	Escherichia coli strain 14EC020 chromosome, complete genome	5	4027916-4028048	4	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA|73aa|down_7|CP024138.1_4035985_4036204_+	NA|283aa|up_9|CP024138.1_4018455_4019304_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|78aa|up_8|CP024138.1_4019604_4019838_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|CP024138.1_4019923_4020403_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|CP024138.1_4020594_4022457_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|CP024138.1_4022449_4022980_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|CP024138.1_4023087_4024419_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|CP024138.1_4024477_4024765_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|CP024138.1_4024761_4026048_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|CP024138.1_4026098_4027040_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|CP024138.1_4027054_4027825_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|CP024138.1_4028297_4029812_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|CP024138.1_4029842_4030985_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|CP024138.1_4031102_4032320_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|CP024138.1_4032392_4033946_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|CP024138.1_4034054_4034840_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|CP024138.1_4034845_4035436_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|CP024138.1_4035555_4035951_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|73aa|down_7|CP024138.1_4035985_4036204_+	NA	NA|1074aa|down_8|CP024138.1_4036211_4039433_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_9|CP024138.1_4039450_4040599_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit
