The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP017884	Bordetella pertussis strain J074, complete genome	4105450	0	64055	4105450	transposase,tRNA,protease	Natrialba_phage(12.5%)	57	NA	NA
AUK66399.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AUK66400.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
AUK66401.1|2605_3403_+	chromosome partitioning protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AUK66402.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK66403.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AUK66404.1|5124_5910_+	L-asparaginase	NA	NA	NA	NA	NA
AUK66405.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66406.1|6721_7912_+	translation elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AUK66407.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AUK66408.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AUK66409.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AUK66410.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AUK66411.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AUK66412.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AUK66413.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AUK66414.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AUK69768.1|20126_20531_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66415.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66416.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AUK69769.1|26575_27286_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66417.1|27282_28185_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66418.1|28314_28614_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66419.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66420.1|29141_30359_-	thiolase	NA	NA	NA	NA	NA
AUK66421.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AUK66422.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69770.1|32214_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK66423.1|33048_34470_+	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
AUK66424.1|34673_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66425.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AUK66426.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AUK66427.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AUK66428.1|40060_40600_+	D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AUK66429.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK66430.1|41318_42212_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66431.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUK66432.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AUK66433.1|43346_43526_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66434.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69771.1|45224_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66435.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUK66436.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66437.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AUK66438.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AUK66439.1|50189_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66440.1|51134_52391_+	muropeptide transporter AmpG	NA	NA	NA	NA	NA
AUK66441.1|53622_54357_-	glutamate racemase	NA	NA	NA	NA	NA
AUK66442.1|54362_54953_-	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AUK66443.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK66444.1|55663_56425_-	glutamate ABC transporter permease	NA	NA	NA	NA	NA
AUK66445.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK66446.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66447.1|59248_60475_-	serine kinase HipA	NA	NA	NA	NA	NA
AUK66448.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK69772.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66449.1|62442_63417_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66450.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
>prophage 2
CP017884	Bordetella pertussis strain J074, complete genome	4105450	69133	122073	4105450	transposase,tRNA	Planktothrix_phage(20.0%)	53	NA	NA
AUK66456.1|69133_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66457.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AUK66458.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AUK66459.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK66460.1|74357_74939_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AUK66461.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66462.1|75280_76123_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66463.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AUK66464.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69773.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66465.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AUK66466.1|82822_83527_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AUK66467.1|83523_84630_-	glycosyl transferase	NA	NA	NA	NA	NA
AUK66468.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AUK66469.1|85481_86669_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AUK66470.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AUK66471.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AUK66472.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AUK66473.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUK66474.1|90793_91846_-	oxidoreductase	NA	NA	NA	NA	NA
AUK66475.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AUK66476.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AUK66477.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66478.1|94468_95272_-	pantothenate kinase	NA	NA	NA	NA	NA
AUK66479.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AUK66480.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK66481.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AUK66482.1|98332_98800_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66483.1|98889_99111_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66484.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66485.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK69774.1|100607_101786_+	peptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	5.8e-66
AUK66486.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUK66487.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AUK66488.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AUK66489.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AUK66490.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AUK66491.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AUK66492.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AUK66493.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66494.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK66495.1|110552_111182_-	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
AUK66496.1|111243_111927_-	cell division protein	NA	NA	NA	NA	NA
AUK66497.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK69775.1|113906_114254_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66498.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69776.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK66499.1|116036_116837_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK66500.1|116833_117709_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK66501.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK66502.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AUK66503.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AUK66504.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP017884	Bordetella pertussis strain J074, complete genome	4105450	232693	291254	4105450	transposase	uncultured_Mediterranean_phage(20.0%)	45	NA	NA
AUK66613.1|232693_233596_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66614.1|233763_234666_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66615.1|234662_235853_-	voltage-gated potassium channel TrkA	NA	NA	NA	NA	NA
AUK66616.1|235974_236739_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
AUK66617.1|236825_237929_-	AI-2E family transporter	NA	NA	NA	NA	NA
AUK69784.1|238120_239137_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK66618.1|239418_239907_+	ADP-heptose synthase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AUK66619.1|239927_240887_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66620.1|240887_241223_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66621.1|241250_241931_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AUK66622.1|241992_242844_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AUK66623.1|242840_243638_-	thiazole synthase	NA	NA	NA	NA	NA
AUK66624.1|243741_244635_-	cobalamin-binding protein	NA	NA	NA	NA	NA
AUK66625.1|244646_246536_-	hypothetical protein	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AUK66626.1|246872_250646_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AUK66627.1|250642_251545_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66628.1|251901_252594_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AUK66629.1|252967_253468_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
AUK66630.1|253574_254495_+	bestrophin	NA	NA	NA	NA	NA
AUK66631.1|254511_254988_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK69785.1|255090_256932_+	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AUK66632.1|256987_257746_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK66633.1|257773_259207_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUK66634.1|259280_260060_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AUK66635.1|260072_260906_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK66636.1|260914_261685_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AUK66637.1|261684_262749_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK66638.1|262900_265528_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AUK66639.1|265591_268213_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66640.1|269140_269599_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66641.1|269877_272121_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AUK66642.1|272317_274342_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AUK66643.1|274465_275428_-	immunogenic protein	NA	NA	NA	NA	NA
AUK66644.1|275639_276779_+	alanine racemase	NA	NA	NA	NA	NA
AUK66645.1|276801_277767_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK66646.1|277962_279153_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AUK66647.1|279166_279412_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66648.1|279440_281462_-	3-methylcrotonyl-CoA carboxylase	NA	NA	NA	NA	NA
AUK69786.1|281508_283116_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
AUK66649.1|283216_284386_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK66650.1|287267_288218_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66651.1|288241_289300_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK66652.1|289374_289749_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK66653.1|289962_290307_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66654.1|290303_291254_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP017884	Bordetella pertussis strain J074, complete genome	4105450	307108	347523	4105450	transposase,integrase	Acinetobacter_phage(10.0%)	40	295736:295760	342808:342832
295736:295760	attL	CGCTGCCCCGGTACGGCACGTGCAG	NA	NA	NA	NA
AUK66667.1|307108_308059_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66668.1|308516_309440_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK66669.1|309448_309847_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66670.1|310088_312059_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66671.1|313545_314535_+|integrase	integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AUK66672.1|314531_314732_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66673.1|314732_314852_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66674.1|314844_315186_-	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
AUK66675.1|315196_316381_-	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AUK66676.1|316417_316945_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66677.1|317002_317650_-	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AUK66678.1|317646_318633_-	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AUK66679.1|318636_318819_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66680.1|318815_319193_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66681.1|319426_319894_-	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AUK66682.1|319929_320832_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66683.1|320978_321221_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66684.1|321387_322029_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66685.1|322039_322990_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66686.1|323099_323495_-	enamine deaminase RidA	NA	NA	NA	NA	NA
AUK66687.1|323664_324366_+	glutathione S-transferase	NA	NA	NA	NA	NA
AUK66688.1|324629_325490_+	Band 7 protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AUK66689.1|325564_325900_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66690.1|326040_327186_-	alanine racemase	NA	NA	NA	NA	NA
AUK66691.1|327213_327873_-	haloacid dehalogenase	NA	NA	NA	NA	NA
AUK66692.1|328877_329084_+|integrase	integrase	integrase	NA	NA	NA	NA
AUK69788.1|329192_329318_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66693.1|329349_329481_+	entericidin	NA	NA	NA	NA	NA
AUK66694.1|329696_336830_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK66695.1|336881_337463_+	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AUK66696.1|337735_338713_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66697.1|338747_340301_+	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
AUK66698.1|340308_341049_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK66699.1|341072_341837_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK66700.1|341881_342217_+	alkylhydroperoxidase	NA	NA	NA	NA	NA
AUK66701.1|342270_343200_+	hypothetical protein	NA	NA	NA	NA	NA
342808:342832	attR	CTGCACGTGCCGTACCGGGGCAGCG	NA	NA	NA	NA
AUK66702.1|343159_344110_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66703.1|344228_345173_-	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AUK66704.1|345169_346411_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AUK66705.1|346572_347523_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP017884	Bordetella pertussis strain J074, complete genome	4105450	596203	660666	4105450	transposase,tRNA	Pandoravirus(16.67%)	51	NA	NA
AUK66913.1|596203_597193_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66914.1|597432_597681_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66915.1|597717_598851_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66916.1|598949_599900_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66917.1|601122_602025_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK66918.1|602026_602881_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AUK66919.1|602927_604037_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUK66920.1|604047_604566_-	flavin reductase	NA	NA	NA	NA	NA
AUK66921.1|604595_605228_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK66922.1|605299_605959_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AUK66923.1|605955_607095_-	MFS transporter	NA	NA	NA	NA	NA
AUK66924.1|607444_608317_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AUK66925.1|608472_609210_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK66926.1|609212_610844_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AUK69806.1|610939_611929_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK66927.1|611925_612636_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK69807.1|612731_613748_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK66928.1|614019_614646_-	aminotransferase	NA	NA	NA	NA	NA
AUK66929.1|614701_615829_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AUK66930.1|615834_621552_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AUK66931.1|621880_622051_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66932.1|622119_623064_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AUK66933.1|623252_624188_+	glycosyl transferase	NA	NA	NA	NA	NA
AUK66934.1|624305_625877_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK66935.1|625956_627165_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK69808.1|627713_628580_+	EamA family transporter	NA	NA	NA	NA	NA
AUK66936.1|630940_631162_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69809.1|631492_632509_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK66937.1|632593_632845_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AUK66938.1|632848_633664_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AUK66939.1|633776_634655_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AUK66940.1|634766_636530_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AUK66941.1|636645_637986_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUK66942.1|639055_640480_-	ATPase	NA	NA	NA	NA	NA
AUK66943.1|640479_641181_-	two-component system response regulator OmpR	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AUK66944.1|642733_643636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69810.1|643731_644703_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK66945.1|644707_645388_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66946.1|645525_645918_+	osmotically inducible protein OsmC	NA	NA	NA	NA	NA
AUK69811.1|646025_647042_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK66947.1|647281_648067_-	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK66948.1|648161_649571_-	lytic transglycosylase	NA	NA	NA	NA	NA
AUK66949.1|649581_650382_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AUK66950.1|650402_651173_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK66951.1|651215_651683_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AUK66952.1|651679_652630_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66953.1|652711_654232_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66954.1|654210_654543_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66955.1|654578_655457_-	fatty acid desaturase	NA	NA	NA	NA	NA
AUK66956.1|656383_659362_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66957.1|659763_660666_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP017884	Bordetella pertussis strain J074, complete genome	4105450	695475	772784	4105450	transposase,tRNA,protease,integrase	Bacillus_phage(20.0%)	59	742612:742630	762500:762518
AUK66989.1|695475_696378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66990.1|696524_698000_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AUK66991.1|699587_700475_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK66992.1|700477_701419_-	peptide ABC transporter	NA	NA	NA	NA	NA
AUK66993.1|701464_703030_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK66994.1|703317_704532_-	methylmalonate-semialdehyde dehydrogenase (acylating)	NA	NA	NA	NA	NA
AUK66995.1|704807_706133_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AUK66996.1|706315_707773_+	GntR family transcriptional regulator	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
AUK66997.1|707736_708234_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
AUK66998.1|708264_709236_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
AUK69812.1|709288_709720_-	peroxiredoxin	NA	NA	NA	NA	NA
AUK66999.1|709849_710518_+	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA	NA
AUK67000.1|711246_712350_+	glycosyl transferase	NA	NA	NA	NA	NA
AUK67001.1|712455_713730_+	Vi polysaccharide biosynthesis protein VipA/TviB	NA	NA	NA	NA	NA
AUK67002.1|713741_714767_+	LPS biosynthesis protein WbpP	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AUK67003.1|714768_716139_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67004.1|716139_717276_+	glycosyl transferase	NA	NA	NA	NA	NA
AUK67005.1|717322_719248_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
AUK67006.1|719244_720366_+	glycosyl transferase	NA	NA	NA	NA	NA
AUK67007.1|720362_721517_+	glycosyl transferase	NA	NA	NA	NA	NA
AUK67008.1|721513_722644_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AUK67009.1|722651_724217_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AUK67010.1|724223_725606_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
AUK67011.1|725884_726496_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67012.1|726587_728003_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AUK67013.1|728020_728731_+	two-component system response regulator	NA	NA	NA	NA	NA
AUK67014.1|728727_730050_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK69813.1|730195_732091_+	sulfatase	NA	NA	NA	NA	NA
AUK67015.1|732216_733530_-	fumarylacetoacetase	NA	NA	NA	NA	NA
AUK67016.1|733638_734937_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
AUK67017.1|735119_736028_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67018.1|736037_736247_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67019.1|736258_737938_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUK67020.1|738039_738993_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AUK67021.1|739083_739911_-	DNA-formamidopyrimidine glycosylase	NA	NA	NA	NA	NA
AUK67022.1|739909_741796_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67023.1|741792_742392_+	lipoprotein localization factor LolB	NA	NA	NA	NA	NA
AUK67024.1|742440_743340_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
742612:742630	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AUK67025.1|743548_744499_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
AUK67026.1|744621_745236_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
AUK67027.1|745364_745961_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AUK67028.1|745957_746740_+|protease	CAAX protease	protease	NA	NA	NA	NA
AUK67029.1|746812_747904_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AUK67030.1|748183_749311_+|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AUK67031.1|749652_750699_+	cell filamentation protein Fic	NA	NA	NA	NA	NA
AUK69814.1|751209_753966_+	restriction endonuclease	NA	NA	NA	NA	NA
AUK67032.1|753967_756919_+	site-specific DNA-methyltransferase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AUK67033.1|756934_758146_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AUK67034.1|758377_759280_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67035.1|759794_760052_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67036.1|760280_760526_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67037.1|760595_761507_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67038.1|761588_761873_+	hypothetical protein	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AUK67039.1|761951_762422_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67040.1|762656_763607_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
762500:762518	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AUK67041.1|764025_766590_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK67042.1|766634_768488_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67043.1|768820_770392_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK67044.1|771833_772784_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP017884	Bordetella pertussis strain J074, complete genome	4105450	1028123	1085787	4105450	transposase,tRNA	Bacillus_virus(25.0%)	53	NA	NA
AUK67248.1|1028123_1029074_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67249.1|1029176_1029839_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67250.1|1029941_1030352_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67251.1|1030456_1031458_+	amidase	NA	NA	NA	NA	NA
AUK67252.1|1031460_1032657_+	formyl-CoA transferase	NA	NA	NA	NA	NA
AUK67253.1|1032677_1033481_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK67254.1|1033561_1033858_+	histidine kinase	NA	NA	NA	NA	NA
AUK67255.1|1033888_1034452_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69831.1|1034492_1035350_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK67256.1|1035357_1036107_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AUK67257.1|1036128_1037001_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67258.1|1037029_1037809_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK67259.1|1037842_1038640_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67260.1|1041294_1041687_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67261.1|1041680_1042541_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK67262.1|1042544_1043507_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK67263.1|1044274_1044973_+	branched-chain amino acid ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.7	3.8e-12
AUK67264.1|1045833_1046784_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67265.1|1046847_1047123_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67266.1|1047133_1048003_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67267.1|1048073_1048769_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67268.1|1048758_1049268_+|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
AUK67269.1|1049264_1050485_+	MFS transporter	NA	NA	NA	NA	NA
AUK67270.1|1050432_1051335_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67271.1|1053546_1054920_+	amidase	NA	NA	NA	NA	NA
AUK67272.1|1054958_1055660_-	riboflavin synthase subunit alpha	NA	NA	NA	NA	NA
AUK67273.1|1055958_1056948_+	MFS transporter	NA	NA	NA	NA	NA
AUK67274.1|1057048_1057510_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK67275.1|1057525_1058074_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AUK67276.1|1058215_1059691_-	acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AUK67277.1|1059796_1060888_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67278.1|1060891_1061674_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK67279.1|1061683_1062472_-	ABC transporter	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AUK67280.1|1063597_1064032_-	thioesterase	NA	NA	NA	NA	NA
AUK67281.1|1064028_1065039_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AUK67282.1|1065082_1066009_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67283.1|1066295_1066664_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67284.1|1066928_1067831_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67285.1|1067875_1070302_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
AUK67286.1|1070350_1071043_+	hydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AUK67287.1|1071115_1072315_+	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
AUK67288.1|1072332_1073238_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67289.1|1073353_1074283_+	acetylxylan esterase	NA	NA	NA	NA	NA
AUK69832.1|1074308_1075655_+	MFS transporter	NA	NA	NA	NA	NA
AUK67290.1|1075667_1076432_+	short-chain dehydrogenase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
AUK67291.1|1076445_1077228_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK67292.1|1077420_1078371_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67293.1|1078432_1079542_-	porin	NA	NA	NA	NA	NA
AUK67294.1|1080054_1080891_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AUK67295.1|1081017_1081926_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67296.1|1081922_1082873_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67297.1|1083258_1083801_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67298.1|1084884_1085787_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP017884	Bordetella pertussis strain J074, complete genome	4105450	1090317	1152448	4105450	transposase	Bacillus_virus(16.67%)	58	NA	NA
AUK67302.1|1090317_1091220_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67303.1|1091216_1093325_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67304.1|1093469_1094081_-	3-methyladenine DNA glycosylase	NA	NA	NA	NA	NA
AUK67305.1|1094160_1094625_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AUK67306.1|1094900_1095086_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67307.1|1095137_1095890_-	DNA-binding protein	NA	NA	NA	NA	NA
AUK67308.1|1095896_1097159_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK67309.1|1099516_1100644_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AUK67310.1|1100654_1101482_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AUK67311.1|1101468_1102335_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK67312.1|1102331_1103240_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67313.1|1103246_1103705_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67314.1|1103701_1104106_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69834.1|1104468_1105380_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67315.1|1105394_1106105_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67316.1|1106101_1107346_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67317.1|1107347_1107782_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67318.1|1107810_1108116_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AUK67319.1|1108214_1109165_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67320.1|1109221_1110370_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK67321.1|1110450_1111353_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67322.1|1111932_1112730_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK67323.1|1112777_1113431_-	DL-methionine transporter permease subunit	NA	NA	NA	NA	NA
AUK67324.1|1113387_1114476_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AUK67325.1|1114640_1116866_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AUK67326.1|1119143_1120040_+	inositol monophosphatase	NA	NA	NA	NA	NA
AUK67327.1|1120208_1121111_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67328.1|1121107_1122799_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AUK67329.1|1122860_1124057_+	amidohydrolase	NA	NA	NA	NA	NA
AUK67330.1|1124070_1124949_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67331.1|1125055_1126102_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67332.1|1126165_1126576_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK67333.1|1126586_1128059_+	magnesium transporter	NA	NA	NA	NA	NA
AUK67334.1|1128254_1129118_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67335.1|1129201_1130353_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK67336.1|1130500_1131511_-	hypothetical protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
AUK67337.1|1131681_1132647_-	MFS transporter	NA	NA	NA	NA	NA
AUK67338.1|1132821_1133652_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67339.1|1133738_1134005_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
AUK67340.1|1134009_1134921_+	geranyl transferase	NA	NA	NA	NA	NA
AUK67341.1|1134970_1136833_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
AUK67342.1|1136989_1137787_+	GTP cyclohydrolase	NA	NA	NA	NA	NA
AUK67343.1|1138006_1138387_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
AUK67344.1|1138434_1138758_+	primosomal replication protein N	NA	NA	NA	NA	NA
AUK67345.1|1138850_1139123_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
AUK67346.1|1139138_1139594_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
AUK67347.1|1139710_1140547_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67348.1|1140543_1141917_+	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
AUK67349.1|1141937_1142906_-	bile acid:sodium symporter	NA	NA	NA	NA	NA
AUK67350.1|1142985_1143963_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
AUK67351.1|1144067_1145747_-	phosphate starvation-inducible protein PhoH	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
AUK67352.1|1145826_1146291_-	peroxiredoxin	NA	NA	NA	NA	NA
AUK67353.1|1146293_1146746_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67354.1|1146962_1148150_+	alanine transaminase	NA	NA	NA	NA	NA
AUK67355.1|1148146_1149451_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
AUK67356.1|1149447_1150854_+	threonine synthase	NA	NA	NA	NA	NA
AUK67357.1|1151067_1151289_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67358.1|1151497_1152448_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP017884	Bordetella pertussis strain J074, complete genome	4105450	1156000	1222468	4105450	transposase,protease	uncultured_Mediterranean_phage(25.0%)	51	NA	NA
AUK67360.1|1156000_1156951_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67361.1|1157541_1158318_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AUK67362.1|1158435_1158699_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AUK67363.1|1158799_1159804_-	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AUK67364.1|1160004_1161606_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AUK67365.1|1161631_1162390_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK67366.1|1162481_1163138_-	adenylate kinase	NA	NA	NA	NA	NA
AUK67367.1|1163228_1163993_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AUK67368.1|1164002_1164191_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67369.1|1164246_1165290_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AUK67370.1|1165286_1165700_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AUK67371.1|1165696_1166317_-	flagellar motor protein MotA	NA	NA	NA	NA	NA
AUK67372.1|1166597_1167548_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67373.1|1167715_1169107_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AUK67374.1|1169179_1169758_+	superoxide dismutase	NA	NA	NA	NA	NA
AUK67375.1|1169874_1171272_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AUK67376.1|1171387_1172593_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AUK67377.1|1172692_1173184_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	4.8e-14
AUK67378.1|1173305_1173551_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AUK67379.1|1173778_1174093_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AUK69836.1|1174806_1179372_+	alpha-2-macroglobulin	NA	NA	NA	NA	NA
AUK69835.1|1179368_1181537_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AUK67380.1|1181592_1183908_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
AUK67381.1|1183912_1185232_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AUK67382.1|1185250_1186924_+	paraquat-inducible protein B	NA	NA	NA	NA	NA
AUK67383.1|1186928_1187597_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67384.1|1187753_1191575_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUK67385.1|1191953_1192856_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67386.1|1192877_1194023_+	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK67387.1|1194171_1195101_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK67388.1|1195097_1196186_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK67389.1|1196182_1196986_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AUK67390.1|1196982_1197714_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AUK67391.1|1197771_1199061_-	MFS transporter	NA	NA	NA	NA	NA
AUK67392.1|1199157_1199760_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67393.1|1200705_1202985_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK67394.1|1204313_1204652_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK67395.1|1205359_1205626_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67396.1|1207380_1208283_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67397.1|1208279_1209611_-	arabinose ABC transporter permease	NA	NA	NA	NA	NA
AUK67398.1|1210871_1212872_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUK67399.1|1212864_1213506_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AUK67400.1|1213502_1213910_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AUK67401.1|1213906_1214707_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67402.1|1214781_1215486_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK67403.1|1215517_1216312_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AUK67404.1|1216308_1217259_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67405.1|1217357_1218260_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67406.1|1218406_1218841_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUK67407.1|1218923_1221260_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AUK69837.1|1221451_1222468_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP017884	Bordetella pertussis strain J074, complete genome	4105450	1322736	1379899	4105450	transposase	Klosneuvirus(16.67%)	52	NA	NA
AUK67482.1|1322736_1323639_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67483.1|1323824_1324094_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67484.1|1324332_1324971_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK67485.1|1325220_1325757_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67486.1|1325775_1327389_+	autotransporter	NA	NA	NA	NA	NA
AUK67487.1|1327385_1327997_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67488.1|1328219_1329680_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AUK67489.1|1329776_1331369_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AUK67490.1|1331722_1331980_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK67491.1|1331981_1333322_+	toxin HipA	NA	NA	NA	NA	NA
AUK67492.1|1333417_1334107_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67493.1|1334119_1335550_+	MFS transporter	NA	NA	NA	NA	NA
AUK67494.1|1337274_1338096_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK67495.1|1338106_1339678_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67496.1|1339706_1340684_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK67497.1|1340710_1341514_+	nitrate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AUK67498.1|1341510_1342305_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK67499.1|1342312_1343548_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69847.1|1343540_1343975_+	aconitase subunit 2	NA	NA	NA	NA	NA
AUK67500.1|1344724_1345675_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67501.1|1345654_1346236_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67502.1|1346296_1348024_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AUK67503.1|1348135_1349494_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AUK67504.1|1349786_1350737_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67505.1|1350777_1351848_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69848.1|1351870_1352749_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67506.1|1352920_1353892_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK67507.1|1354054_1354897_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67508.1|1355058_1355739_+	anti-sigma factor	NA	NA	NA	NA	NA
AUK67509.1|1355732_1356902_+	amine oxidase	NA	NA	NA	NA	NA
AUK67510.1|1356898_1357930_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AUK67511.1|1357997_1359215_+	MFS transporter	NA	NA	NA	NA	NA
AUK67512.1|1359249_1360782_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67513.1|1360862_1361486_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK67514.1|1361516_1362128_+	RhtB family transporter	NA	NA	NA	NA	NA
AUK67515.1|1362163_1362634_+	histidine kinase	NA	NA	NA	NA	NA
AUK67516.1|1363065_1364070_+	peptidase M20	NA	NA	NA	NA	NA
AUK67517.1|1364106_1365621_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK67518.1|1365624_1366584_+	ABC transporter	NA	NA	NA	NA	NA
AUK67519.1|1366612_1367416_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK67520.1|1367417_1369052_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AUK67521.1|1369135_1370197_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK67522.1|1370668_1371193_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AUK67523.1|1371656_1372559_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67524.1|1372555_1373590_-	hydrolase	NA	NA	NA	NA	NA
AUK67525.1|1373698_1374337_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67526.1|1374631_1374859_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK67527.1|1374981_1375695_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK67528.1|1375939_1376890_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67529.1|1377029_1377275_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67530.1|1377389_1378838_-	2-aminoadipate aminotransferase	NA	NA	NA	NA	NA
AUK67531.1|1378948_1379899_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP017884	Bordetella pertussis strain J074, complete genome	4105450	1470128	1522281	4105450	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
AUK67612.1|1470128_1471079_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67613.1|1471245_1471599_+	cytochrome C	NA	NA	NA	NA	NA
AUK67614.1|1471611_1471974_+	cytochrome	NA	NA	NA	NA	NA
AUK67615.1|1472015_1472441_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67616.1|1472643_1473900_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AUK67617.1|1474098_1475079_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67618.1|1475228_1476470_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67619.1|1476568_1477519_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67620.1|1477527_1478223_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AUK67621.1|1478264_1480979_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK67622.1|1481044_1481644_-	potassium-transporting ATPase subunit C	NA	NA	NA	NA	NA
AUK67623.1|1481654_1483820_-	potassium-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AUK67624.1|1483843_1485628_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
AUK67625.1|1485627_1485717_-	potassium-transporting ATPase subunit F	NA	NA	NA	NA	NA
AUK67626.1|1486411_1486684_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67627.1|1486683_1488750_+	cation acetate symporter	NA	NA	NA	NA	NA
AUK67628.1|1488746_1489649_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67629.1|1489795_1490698_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67630.1|1490861_1491194_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AUK67631.1|1491190_1491877_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AUK67632.1|1491863_1492823_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AUK67633.1|1492855_1495225_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AUK67634.1|1495224_1495857_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AUK67635.1|1495958_1497299_+	recombination factor protein RarA	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AUK67636.1|1497345_1498701_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AUK67637.1|1498991_1499228_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67638.1|1499415_1499733_-	virulence factor	NA	NA	NA	NA	NA
AUK67639.1|1500005_1500521_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AUK67640.1|1500614_1500776_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67641.1|1500791_1501547_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AUK67642.1|1501885_1502092_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67643.1|1502099_1502759_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AUK67644.1|1503053_1505258_-	porin	NA	NA	NA	NA	NA
AUK67645.1|1505368_1506592_-	multidrug transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AUK67646.1|1506714_1507689_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK67647.1|1507756_1508950_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK67648.1|1508964_1509765_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AUK67649.1|1509761_1511618_-	IucA/IucC family protein	NA	NA	NA	NA	NA
AUK67650.1|1511614_1512220_-	siderophore biosynthesis protein	NA	NA	NA	NA	NA
AUK67651.1|1512238_1513624_-	alcaligin biosynthesis protein	NA	NA	NA	NA	NA
AUK67652.1|1514349_1515576_+	transporter	NA	NA	NA	NA	NA
AUK67653.1|1515664_1516447_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK67654.1|1516593_1517496_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67655.1|1517522_1518296_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AUK67656.1|1518307_1519549_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67657.1|1521378_1522281_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP017884	Bordetella pertussis strain J074, complete genome	4105450	1624117	1695223	4105450	transposase	Ectocarpus_siliculosus_virus(11.11%)	55	NA	NA
AUK67750.1|1624117_1625068_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67751.1|1625089_1626310_+	YggW family oxidoreductase	NA	NA	NA	NA	NA
AUK67752.1|1626495_1627908_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AUK67753.1|1627971_1629039_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AUK67754.1|1629038_1630526_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AUK69861.1|1630535_1631480_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67755.1|1631639_1632338_+	quercetin 2,3-dioxygenase	NA	NA	NA	NA	NA
AUK67756.1|1632415_1633321_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67757.1|1633340_1634243_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67758.1|1634389_1635184_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AUK67759.1|1635188_1636859_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AUK67760.1|1636982_1638032_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK67761.1|1638353_1639130_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AUK67762.1|1639194_1640097_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67763.1|1641390_1642194_+	2,5-didehydrogluconate reductase B	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AUK67764.1|1644887_1645274_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AUK67765.1|1645289_1647380_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
AUK67766.1|1647431_1648385_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AUK69862.1|1648399_1649287_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67767.1|1649424_1650951_+	methylmalonate-semialdehyde dehydrogenase (acylating)	NA	NA	NA	NA	NA
AUK69863.1|1651049_1651550_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AUK67768.1|1651873_1653829_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK67769.1|1653996_1656081_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69864.1|1656107_1656533_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67770.1|1657748_1658519_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AUK67771.1|1658518_1659259_+	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK67772.1|1659300_1660470_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AUK67773.1|1660501_1662586_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AUK67774.1|1662582_1663473_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK67775.1|1663469_1664567_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUK67776.1|1664589_1665879_+	Vi polysaccharide biosynthesis protein VipA/TviB	NA	NA	NA	NA	NA
AUK67777.1|1665890_1666916_+	LPS biosynthesis protein WbpP	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AUK67778.1|1666912_1668970_+	beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase	NA	NA	NA	NA	NA
AUK67779.1|1668983_1670159_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUK67780.1|1670240_1671191_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67781.1|1671249_1672023_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK67782.1|1672015_1673572_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK67783.1|1673568_1674519_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67784.1|1675845_1676448_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67785.1|1676687_1677389_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK67786.1|1677382_1678165_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AUK67787.1|1678349_1679300_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67788.1|1679398_1680136_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AUK67789.1|1680325_1681084_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK67790.1|1681130_1682132_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK67791.1|1682297_1683266_-	phenol degradation protein meta	NA	NA	NA	NA	NA
AUK67792.1|1684805_1685774_+	AAA family ATPase	NA	NA	NA	NA	NA
AUK67793.1|1685782_1686724_+	MoxR protein	NA	NA	NA	NA	NA
AUK69865.1|1687197_1688208_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69867.1|1688198_1689713_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67794.1|1689709_1691056_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69866.1|1691058_1692093_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AUK67795.1|1692142_1693768_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AUK67796.1|1693861_1694341_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67797.1|1694320_1695223_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP017884	Bordetella pertussis strain J074, complete genome	4105450	1716062	1777410	4105450	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	54	NA	NA
AUK67813.1|1716062_1717013_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67814.1|1717121_1717310_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69871.1|1717306_1718029_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AUK67815.1|1718467_1719655_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69872.1|1719658_1720009_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK67816.1|1720242_1721655_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67817.1|1721758_1722730_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK67818.1|1722743_1723457_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK67819.1|1723461_1724379_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67820.1|1724485_1724782_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67821.1|1724928_1725831_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67822.1|1726989_1729923_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AUK67823.1|1729922_1730267_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AUK67824.1|1730263_1731892_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AUK67825.1|1731891_1732368_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AUK67826.1|1732367_1732649_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AUK67827.1|1732645_1732972_+	cation:proton antiporter	NA	NA	NA	NA	NA
AUK67828.1|1733127_1734078_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67829.1|1734121_1734664_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67830.1|1734761_1735610_+	hydrolase	NA	NA	NA	NA	NA
AUK69873.1|1735659_1736109_+|tRNA	tRNA-specific adenosine deaminase	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
AUK67831.1|1736105_1737107_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
AUK67832.1|1737119_1737914_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK67833.1|1737962_1739864_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK67834.1|1739860_1740484_-	hypothetical protein	NA	NA	NA	NA	NA
AUK67835.1|1740610_1741735_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK67836.1|1742115_1743720_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
AUK67837.1|1743875_1744652_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AUK67838.1|1744736_1745735_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK67839.1|1745731_1746505_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK67840.1|1747489_1748440_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67841.1|1748463_1748928_-|tRNA	glutamyl-tRNA amidotransferase	tRNA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AUK67842.1|1749074_1750283_+	nitric oxide dioxygenase	NA	NA	NA	NA	NA
AUK67843.1|1750326_1750764_+	BadM/Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
AUK67844.1|1750882_1752172_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AUK67845.1|1754912_1755863_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67846.1|1755961_1756978_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
AUK67847.1|1757156_1758191_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AUK67848.1|1758187_1758814_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AUK67849.1|1758810_1759863_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AUK67850.1|1759912_1760683_+	DNAase	NA	NA	NA	NA	NA
AUK67851.1|1760733_1761570_+	hypothetical protein	NA	NA	NA	NA	NA
AUK67852.1|1761765_1762506_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67853.1|1762580_1763324_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK67854.1|1763985_1764759_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AUK67855.1|1765896_1767186_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
AUK67856.1|1768796_1770044_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK67857.1|1770053_1771763_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AUK67858.1|1771759_1772698_-	CoA ester lyase	NA	NA	NA	NA	NA
AUK67859.1|1772694_1773978_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AUK67860.1|1773981_1774464_-	TRAP transporter small permease protein	NA	NA	NA	NA	NA
AUK67861.1|1774464_1775451_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK67862.1|1775623_1776343_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67863.1|1776459_1777410_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP017884	Bordetella pertussis strain J074, complete genome	4105450	1958596	2028249	4105450	transposase,tRNA	Staphylococcus_phage(16.67%)	57	NA	NA
AUK67990.1|1958596_1961254_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AUK69887.1|1961331_1962489_-	MFS transporter	NA	NA	NA	NA	NA
AUK67991.1|1962530_1963043_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK67992.1|1963165_1963603_-	DNA-binding protein	NA	NA	NA	NA	NA
AUK67993.1|1963927_1964830_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67994.1|1964976_1965879_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67995.1|1966132_1967938_+	sulfate transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
AUK67996.1|1968051_1968219_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AUK67997.1|1968282_1968519_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AUK69888.1|1968887_1970039_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AUK67998.1|1971650_1972553_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK67999.1|1973004_1974006_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK68000.1|1974178_1975036_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK68001.1|1975032_1976295_+	glycine/betaine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AUK68002.1|1976395_1976770_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AUK68003.1|1976842_1978030_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK68004.1|1978114_1978885_+	spermidine synthase	NA	NA	NA	NA	NA
AUK68005.1|1978998_1979763_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68006.1|1979713_1981015_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AUK68007.1|1981011_1981818_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK68008.1|1983562_1984534_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK68009.1|1984690_1985203_+	superoxide dismutase	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AUK68010.1|1985361_1986336_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK68011.1|1987336_1988131_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AUK69889.1|1988156_1988963_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AUK68012.1|1989073_1989664_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68013.1|1989674_1990853_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68014.1|1990955_1991330_+	DNA-binding protein	NA	NA	NA	NA	NA
AUK68015.1|1991582_1992914_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK68016.1|1992980_1996211_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AUK68017.1|1997701_1998448_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AUK68018.1|1998532_1998994_+	holo-ACP synthase	NA	NA	NA	NA	NA
AUK68019.1|1999031_2000090_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
AUK68020.1|2000052_2001882_+	excinuclease ABC subunit C	NA	NA	NA	NA	NA
AUK68021.1|2001921_2002494_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AUK68022.1|2002663_2003632_+	MFS transporter	NA	NA	NA	NA	NA
AUK68023.1|2003641_2003983_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68024.1|2003918_2004740_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
AUK68025.1|2005058_2006381_+	isocitrate lyase	NA	NA	NA	NA	NA
AUK68026.1|2006740_2007376_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68027.1|2007335_2008238_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68028.1|2009156_2010029_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK68029.1|2010106_2011246_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK68030.1|2011604_2012861_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AUK68031.1|2012866_2013394_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AUK68032.1|2013398_2014217_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK68033.1|2014216_2014939_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK68034.1|2014960_2015275_+	2Fe-2S ferredoxin	NA	NA	NA	NA	NA
AUK68035.1|2015292_2016441_+	carnitine dehydratase	NA	NA	NA	NA	NA
AUK68036.1|2016471_2017347_-	esterase	NA	NA	NA	NA	NA
AUK68037.1|2017343_2018663_-	acyl--CoA ligase	NA	NA	NA	NA	NA
AUK68038.1|2019943_2021314_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68039.1|2021671_2023498_-	DUF3604 domain-containing protein	NA	NA	NA	NA	NA
AUK68040.1|2024025_2024925_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68041.1|2025062_2026028_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK68042.1|2026126_2027077_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68043.1|2027298_2028249_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP017884	Bordetella pertussis strain J074, complete genome	4105450	2039745	2082172	4105450	transposase	Erysipelothrix_phage(20.0%)	41	NA	NA
AUK68056.1|2039745_2040696_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68057.1|2040682_2041687_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68058.1|2041833_2042130_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68059.1|2042304_2043657_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AUK69891.1|2043799_2044816_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK69892.1|2046795_2047809_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK68060.1|2047895_2048801_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68061.1|2048957_2049302_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68062.1|2049459_2049918_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AUK68063.1|2049931_2052148_+	aldehyde oxidase	NA	NA	NA	NA	NA
AUK68064.1|2052144_2053206_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68065.1|2053234_2054209_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK68066.1|2054160_2054979_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AUK68067.1|2054991_2055600_-	peptidase S16	NA	NA	NA	NA	NA
AUK68068.1|2055774_2056170_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68069.1|2056188_2057628_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AUK68070.1|2057656_2058004_+	aldehyde-activating protein	NA	NA	NA	NA	NA
AUK68071.1|2058022_2058925_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69893.1|2059047_2059527_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK68072.1|2059625_2060576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68073.1|2060659_2062477_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AUK69894.1|2062604_2063198_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68074.1|2063210_2064140_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68075.1|2064309_2064774_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68076.1|2065021_2065702_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68077.1|2065750_2067442_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AUK68078.1|2067457_2068009_-	ATPase	NA	NA	NA	NA	NA
AUK68079.1|2068005_2068377_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK68080.1|2068489_2069326_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK68081.1|2069336_2069816_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68082.1|2069958_2070138_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AUK68083.1|2070267_2071242_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK68084.1|2071372_2071729_+	RNA signal recognition particle	NA	NA	NA	NA	NA
AUK69895.1|2071718_2072594_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AUK68085.1|2072692_2073577_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68086.1|2073598_2074894_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68087.1|2075842_2076493_+	NAD(P)H dehydrogenase	NA	NA	NA	NA	NA
AUK69896.1|2076580_2078101_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUK68088.1|2078358_2080224_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK68089.1|2080307_2081171_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68090.1|2081269_2082172_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP017884	Bordetella pertussis strain J074, complete genome	4105450	2100345	2171855	4105450	transposase,tRNA	Klosneuvirus(22.22%)	60	NA	NA
AUK68108.1|2100345_2101296_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68109.1|2101442_2102345_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68110.1|2102304_2102718_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AUK68111.1|2103002_2103302_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68112.1|2103711_2105994_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
AUK68113.1|2106679_2108710_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AUK68114.1|2108729_2108942_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AUK68115.1|2109219_2109759_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
AUK68116.1|2109872_2111168_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AUK68117.1|2111244_2112402_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AUK68118.1|2112585_2113485_-	HflC protein	NA	NA	NA	NA	NA
AUK68119.1|2113503_2114808_-	HflK protein	NA	NA	NA	NA	NA
AUK68120.1|2114773_2115880_-	GTPase HflX	NA	NA	NA	NA	NA
AUK68121.1|2115967_2116204_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
AUK68122.1|2116342_2117413_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AUK68123.1|2117416_2118772_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AUK69900.1|2118798_2119956_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AUK68124.1|2119961_2120600_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68125.1|2120601_2121897_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK68126.1|2121946_2123233_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	NA	NA	NA	NA	NA
AUK68127.1|2123248_2123755_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK68128.1|2123751_2124900_-	23S rRNA (adenine(2503)-C(2))-methyltransferase	NA	NA	NA	NA	NA
AUK68129.1|2124927_2125353_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AUK68130.1|2125675_2128558_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AUK68131.1|2128650_2129406_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68132.1|2130171_2131521_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK68133.1|2131667_2132570_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68134.1|2132668_2133619_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68135.1|2133692_2134166_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68136.1|2134191_2135400_+	class V aminotransferase	NA	NA	NA	NA	NA
AUK68137.1|2135396_2136170_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AUK68138.1|2136169_2136793_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AUK68139.1|2136958_2137219_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AUK68140.1|2137522_2138104_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68141.1|2138170_2138425_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68142.1|2138411_2141036_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AUK68143.1|2141107_2141926_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68144.1|2141922_2142528_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AUK68145.1|2142565_2143699_-	general secretion pathway protein	NA	NA	NA	NA	NA
AUK69901.1|2145414_2145789_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68146.1|2145886_2147161_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68147.1|2147164_2148742_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68148.1|2149648_2151004_-	amidase	NA	NA	NA	NA	NA
AUK68149.1|2151000_2152635_-	microcin ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AUK69902.1|2152627_2153548_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK68150.1|2153475_2154420_-	peptide ABC transporter	NA	NA	NA	NA	NA
AUK68151.1|2154472_2156047_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK68152.1|2156094_2156460_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68153.1|2157917_2158874_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68154.1|2159023_2160361_-	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK68155.1|2160365_2161622_-	amino acid dehydrogenase	NA	NA	NA	NA	NA
AUK68156.1|2161817_2162864_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AUK68157.1|2162921_2163290_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AUK68158.1|2163420_2164293_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AUK68159.1|2164369_2165272_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68160.1|2165276_2166332_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
AUK68161.1|2166328_2167546_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68162.1|2168819_2169722_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68163.1|2169970_2170780_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK68164.1|2170952_2171855_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP017884	Bordetella pertussis strain J074, complete genome	4105450	2223104	2280383	4105450	transposase,tRNA	Klosneuvirus(15.38%)	49	NA	NA
AUK68213.1|2223104_2224055_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69903.1|2224153_2225551_-	rRNA methyltransferase	NA	NA	NA	NA	NA
AUK68214.1|2226207_2227173_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA	NA
AUK68215.1|2227162_2230024_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AUK68216.1|2230026_2230533_+	signal peptidase II	NA	NA	NA	NA	NA
AUK68217.1|2230637_2231846_+	phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AUK68218.1|2231847_2232786_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68219.1|2232947_2233421_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK68220.1|2233417_2234368_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68221.1|2234478_2234919_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68222.1|2235047_2236277_-	lytic transglycosylase	NA	NA	NA	NA	NA
AUK68223.1|2236315_2237137_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68224.1|2237190_2238342_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK68225.1|2238433_2238904_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68226.1|2241472_2244022_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AUK68227.1|2244092_2246666_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AUK68228.1|2246931_2247132_+	general stress protein CsbD	NA	NA	NA	NA	NA
AUK68229.1|2247163_2247325_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AUK68230.1|2247382_2247721_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AUK68231.1|2247869_2248772_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68232.1|2249594_2250263_+	arylesterase	NA	NA	NA	NA	NA
AUK69904.1|2250244_2252200_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AUK68233.1|2252442_2253192_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AUK68234.1|2253204_2254068_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AUK68235.1|2254071_2255487_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AUK68236.1|2255620_2256349_-	glutathione peroxidase	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AUK68237.1|2256487_2256688_-	heavy metal transporter	NA	NA	NA	NA	NA
AUK68238.1|2256863_2257262_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUK68239.1|2257285_2258686_-	23S rRNA (uracil(1939)-C(5))-methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AUK68240.1|2258804_2259557_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68241.1|2259845_2260445_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68242.1|2260549_2261329_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AUK68243.1|2261325_2262210_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AUK68244.1|2262227_2263007_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
AUK68245.1|2262991_2263750_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AUK69905.1|2263887_2264523_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK69906.1|2264790_2265807_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK68246.1|2265904_2266945_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AUK68247.1|2267079_2268372_+	guanine permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AUK68248.1|2269731_2270115_+	thiol reductase thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AUK68249.1|2270132_2270720_-	thymidylate synthase	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AUK68250.1|2270757_2271708_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68251.1|2271806_2272367_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AUK68252.1|2272363_2272909_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68253.1|2273104_2274133_+	silent information regulator protein Sir2	NA	NA	NA	NA	NA
AUK68254.1|2274173_2275514_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AUK68255.1|2275622_2276627_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK68256.1|2276733_2279334_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK68257.1|2279480_2280383_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP017884	Bordetella pertussis strain J074, complete genome	4105450	2319544	2383074	4105450	transposase,protease	uncultured_Caudovirales_phage(11.11%)	50	NA	NA
AUK68294.1|2319544_2320447_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68295.1|2320748_2321225_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
AUK68296.1|2321848_2323486_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
AUK68297.1|2323516_2324830_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
AUK69913.1|2324990_2325281_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68298.1|2325381_2326704_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK68299.1|2326700_2327603_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68300.1|2327749_2328652_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68301.1|2328781_2329165_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68302.1|2329229_2330252_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK68303.1|2330280_2331111_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AUK69914.1|2331127_2332825_-	phosphonate ABC transporter permease	NA	NA	NA	NA	NA
AUK68304.1|2332889_2333966_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
AUK68305.1|2334125_2334989_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68306.1|2335019_2335589_+	phosphohydrolase	NA	NA	NA	NA	NA
AUK68307.1|2335605_2336457_-	sulfurtransferase	NA	NA	NA	NA	NA
AUK68308.1|2337514_2338396_+|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
AUK68309.1|2338470_2339460_-	quinone oxidoreductase	NA	NA	NA	NA	NA
AUK68310.1|2339522_2340473_-	EamA family transporter	NA	NA	NA	NA	NA
AUK68311.1|2340535_2341393_+	EamA family transporter	NA	NA	NA	NA	NA
AUK68312.1|2341452_2341941_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68313.1|2343513_2344704_+	HlyD family secretion protein	NA	NA	NA	NA	NA
AUK68314.1|2344700_2346287_+	MFS transporter	NA	NA	NA	NA	NA
AUK68315.1|2346305_2347373_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
AUK69915.1|2347477_2349007_-	DNA-binding protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.0e-14
AUK68316.1|2349441_2351016_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK68317.1|2351123_2352140_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK68318.1|2352136_2352976_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK68319.1|2352986_2354618_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.7e-21
AUK68320.1|2354614_2355517_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68321.1|2355707_2356982_+	4-aminobutyrate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
AUK68322.1|2357011_2357302_+	cupin	NA	NA	NA	NA	NA
AUK69916.1|2357374_2358388_+	acetylpolyamine amidohydrolase	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
AUK68323.1|2358407_2359670_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK68324.1|2359672_2360596_+	EamA family transporter	NA	NA	NA	NA	NA
AUK68325.1|2360592_2362086_+	aldehyde dehydrogenase PuuC	NA	NA	NA	NA	NA
AUK68326.1|2362096_2363029_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AUK68327.1|2363246_2364536_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
AUK69917.1|2364570_2365914_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AUK68328.1|2365986_2367507_-	ATP-binding protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
AUK68329.1|2367661_2368393_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68330.1|2368490_2369801_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AUK68331.1|2369816_2370728_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AUK69918.1|2370724_2371312_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AUK68332.1|2371373_2371760_+	ribosome silencing factor	NA	NA	NA	NA	NA
AUK68333.1|2371771_2372242_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AUK68334.1|2372253_2372877_+	septum formation protein Maf	NA	NA	NA	NA	NA
AUK68335.1|2372897_2375645_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK68336.1|2381921_2382137_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68337.1|2382123_2383074_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP017884	Bordetella pertussis strain J074, complete genome	4105450	2528015	2586259	4105450	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
AUK68457.1|2528015_2528918_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68458.1|2529445_2530102_-	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
AUK68459.1|2530116_2531784_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK68460.1|2531786_2532416_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK68461.1|2532627_2533722_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK68462.1|2533866_2534679_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AUK68463.1|2534682_2536266_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AUK68464.1|2536436_2537567_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUK68465.1|2537753_2538830_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AUK69929.1|2538911_2539562_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUK68466.1|2539576_2540980_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AUK68467.1|2541263_2542082_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK68468.1|2542078_2542783_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AUK68469.1|2543682_2544798_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68470.1|2544831_2545206_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68471.1|2545228_2546386_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AUK68472.1|2546398_2546632_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68473.1|2547266_2550236_-	formate dehydrogenase	NA	NA	NA	NA	NA
AUK68474.1|2550250_2550460_-	formate dehydrogenase	NA	NA	NA	NA	NA
AUK68475.1|2550611_2551241_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69930.1|2551237_2553295_-	4Fe-4S ferredoxin	NA	NA	NA	NA	NA
AUK68476.1|2553351_2554032_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68477.1|2554028_2554589_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68478.1|2554595_2555693_-	MRP family ATP-binding protein	NA	NA	NA	NA	NA
AUK68479.1|2555845_2556439_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AUK68480.1|2556435_2557728_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AUK68481.1|2557741_2558284_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AUK68482.1|2558293_2559130_-	peptidase M48	NA	NA	NA	NA	NA
AUK68483.1|2559163_2560225_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AUK68484.1|2560266_2561319_-	diguanylate cyclase	NA	NA	NA	NA	NA
AUK68485.1|2561334_2561637_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68486.1|2561778_2562729_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68487.1|2562907_2564602_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK68488.1|2564598_2565684_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AUK68489.1|2565731_2566631_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68490.1|2566641_2567286_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AUK68491.1|2568307_2571550_-	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
AUK68492.1|2571560_2572715_-	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
AUK68493.1|2572941_2573904_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
AUK68494.1|2574050_2574953_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68495.1|2575099_2576002_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68496.1|2576011_2576701_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68497.1|2576760_2577198_-	thioesterase	NA	NA	NA	NA	NA
AUK68498.1|2577243_2578137_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK68499.1|2578184_2579357_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK68500.1|2579353_2580508_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK68501.1|2580704_2581055_-	RnfH family protein	NA	NA	NA	NA	NA
AUK68502.1|2581044_2581479_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AUK68503.1|2581495_2582398_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68504.1|2582593_2583061_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AUK68505.1|2583041_2584199_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AUK68506.1|2584264_2585191_-	paraslipin	NA	NA	NA	NA	NA
AUK68507.1|2585356_2586259_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP017884	Bordetella pertussis strain J074, complete genome	4105450	2628587	2695039	4105450	transposase	uncultured_Caudovirales_phage(40.0%)	58	NA	NA
AUK68545.1|2628587_2629490_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68546.1|2629505_2629718_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68547.1|2629859_2630432_+	flagellar basal body protein FliL	NA	NA	NA	NA	NA
AUK68548.1|2630434_2631445_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AUK68549.1|2631437_2631938_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AUK68550.1|2631948_2632290_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AUK69934.1|2632358_2633093_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AUK68551.1|2633109_2633379_+	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AUK68552.1|2633401_2634190_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AUK69935.1|2634236_2635253_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK68553.1|2635469_2636912_-	chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AUK68554.1|2637090_2638710_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AUK68555.1|2638830_2640651_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AUK68556.1|2640729_2642262_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AUK68557.1|2642295_2643942_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AUK68558.1|2644011_2645034_-	flagellar rod assembly protein/muramidase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AUK68559.1|2645051_2646185_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AUK68560.1|2646187_2646877_-	flagellar basal body L-ring protein	NA	NA	NA	NA	NA
AUK68561.1|2646876_2647662_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AUK68562.1|2647705_2648470_-	flagellar biosynthesis protein FlgF	NA	NA	NA	NA	NA
AUK68563.1|2648508_2649930_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AUK68564.1|2649995_2650700_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AUK68565.1|2650747_2651167_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AUK68566.1|2651179_2651587_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AUK69936.1|2651770_2652481_+	flagella basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AUK68567.1|2652607_2652898_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AUK68568.1|2652915_2653398_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AUK68569.1|2657903_2659058_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AUK69937.1|2659363_2660380_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK68570.1|2660626_2661415_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK68571.1|2661481_2662162_+	cysteine ABC transporter permease	NA	NA	NA	NA	NA
AUK68572.1|2662158_2662929_+	ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AUK68573.1|2663027_2663978_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68574.1|2664033_2664951_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AUK68575.1|2664961_2666140_-	mandelate racemase	NA	NA	NA	NA	NA
AUK68576.1|2666159_2667155_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68577.1|2668743_2669352_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUK68578.1|2669339_2670380_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK68579.1|2670397_2671360_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68580.1|2671356_2672550_-	CoA transferase	NA	NA	NA	NA	NA
AUK68581.1|2672546_2673344_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AUK68582.1|2673369_2674356_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68583.1|2674374_2676414_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUK69938.1|2676615_2677296_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68584.1|2677309_2678221_-	CoA ester lyase	NA	NA	NA	NA	NA
AUK68585.1|2678217_2678796_-	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
AUK68586.1|2678934_2679840_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68587.1|2679847_2683267_+	nuclease	NA	NA	NA	NA	NA
AUK68588.1|2683254_2685855_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK68589.1|2686810_2687443_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68590.1|2687836_2688595_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68591.1|2688591_2689794_+	cardiolipin synthase B	NA	NA	NA	NA	NA
AUK68592.1|2689790_2689991_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68593.1|2689981_2690932_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68594.1|2691839_2692985_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68595.1|2692971_2693727_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK68596.1|2693843_2694023_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68597.1|2694088_2695039_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP017884	Bordetella pertussis strain J074, complete genome	4105450	2916888	3051099	4105450	transposase,tRNA	uncultured_Mediterranean_phage(16.67%)	111	NA	NA
AUK68774.1|2916888_2917791_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68775.1|2917837_2918392_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AUK68776.1|2918459_2919305_-	phosphatase	NA	NA	NA	NA	NA
AUK68777.1|2919374_2920343_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK68778.1|2924038_2927932_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68779.1|2928255_2928432_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68780.1|2928700_2931931_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK68781.1|2932212_2933040_-	DNAase	NA	NA	NA	NA	NA
AUK68782.1|2933073_2933769_-	lipoprotein releasing system, ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AUK69958.1|2933761_2934994_-	cell division protein FtsX	NA	NA	NA	NA	NA
AUK68783.1|2935087_2936029_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69959.1|2936010_2937711_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AUK68784.1|2937985_2938918_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AUK68785.1|2938947_2939703_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK68786.1|2939709_2941230_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AUK68787.1|2941272_2941575_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68788.1|2941571_2942204_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68789.1|2942282_2944148_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AUK68790.1|2944144_2944960_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AUK68791.1|2944967_2946083_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK68792.1|2946493_2946736_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68793.1|2946987_2947866_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK68794.1|2947865_2948690_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AUK68795.1|2948857_2949760_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68796.1|2950020_2952870_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AUK68797.1|2952851_2953580_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68798.1|2953720_2955184_-	hypothetical protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AUK68799.1|2955180_2955552_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68800.1|2955569_2956883_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68801.1|2956919_2957378_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68802.1|2957490_2958441_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68803.1|2958437_2959415_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AUK68804.1|2959590_2960577_+	homoserine kinase	NA	NA	NA	NA	NA
AUK68805.1|2960620_2961421_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68806.1|2962223_2963126_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68807.1|2963325_2963928_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68808.1|2963946_2964579_+	rRNA methyltransferase	NA	NA	NA	NA	NA
AUK68809.1|2964816_2966703_+	cell division protein FtsH	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AUK68810.1|2966721_2967564_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AUK68811.1|2967560_2968919_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AUK68812.1|2969139_2969934_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK68813.1|2970164_2971658_-	exopolyphosphatase	NA	NA	NA	NA	NA
AUK68814.1|2971893_2973975_+	RNA degradosome polyphosphate kinase	NA	NA	NA	NA	NA
AUK68815.1|2974169_2975210_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AUK68816.1|2975344_2976361_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AUK68817.1|2976403_2977240_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AUK69960.1|2977284_2978061_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AUK68818.1|2978428_2979379_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68819.1|2979405_2979870_-	barstar family protein 2	NA	NA	NA	NA	NA
AUK68820.1|2981076_2983365_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AUK68821.1|2983481_2984354_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68822.1|2984396_2985551_+	aminotransferase	NA	NA	NA	NA	NA
AUK68823.1|2985585_2986416_-	lytic transglycosylase	NA	NA	NA	NA	NA
AUK68824.1|2986499_2988044_+	3-octaprenyl-4-hydroxybenzoate decarboxylase	NA	NA	NA	NA	NA
AUK68825.1|2988086_2988446_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68826.1|2988447_2988861_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68827.1|2988901_2989219_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69961.1|2989303_2990017_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69962.1|2990283_2991705_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
AUK68828.1|2994377_2995328_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68829.1|2995307_2995568_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69963.1|2995900_2996917_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK68830.1|2997249_2998185_-	protein-export membrane protein SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AUK68831.1|2998234_3000115_-	protein-export membrane protein SecD	NA	NA	NA	NA	NA
AUK68832.1|3000181_3000526_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AUK68833.1|3000670_3001807_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AUK68834.1|3001803_3002877_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AUK68835.1|3003034_3004471_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AUK69964.1|3004561_3005203_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AUK69965.1|3005538_3006555_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK68836.1|3007492_3008920_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AUK68837.1|3008916_3009939_+	phosphate starvation-inducible protein PhoH	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AUK68838.1|3009928_3010402_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
AUK68839.1|3010542_3011430_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AUK68840.1|3011426_3013070_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AUK69966.1|3013066_3014074_-	aldo/keto reductase	NA	NA	NA	NA	NA
AUK69967.1|3014904_3015921_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK68841.1|3016020_3016653_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AUK68842.1|3016661_3017051_-	two-component system response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AUK68843.1|3017103_3018156_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AUK68844.1|3019019_3019784_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68845.1|3019857_3020358_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AUK68846.1|3020372_3022430_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AUK68847.1|3022456_3022750_-	two-component system response regulator	NA	NA	NA	NA	NA
AUK68848.1|3022851_3023799_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
AUK68849.1|3023811_3024687_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AUK68850.1|3024807_3025368_-	transcriptional regulator FlhC	NA	NA	NA	NA	NA
AUK68851.1|3025402_3025726_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AUK68852.1|3026161_3026899_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AUK68853.1|3027197_3028100_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68854.1|3028391_3028655_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AUK68855.1|3028728_3029010_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69968.1|3029026_3029869_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AUK68856.1|3029883_3030219_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68857.1|3030272_3030923_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AUK68858.1|3032603_3033548_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68859.1|3033593_3033911_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68860.1|3033913_3034852_-	cytochrome C biogenesis protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AUK68861.1|3035029_3035515_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK68862.1|3035533_3036082_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AUK68863.1|3037595_3038237_+	glutathione S-transferase	NA	NA	NA	NA	NA
AUK69969.1|3038391_3040740_+	3-hydroxyalkanoate synthetase	NA	NA	NA	NA	NA
AUK68864.1|3040736_3041675_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
AUK68865.1|3041700_3042891_+	acetate kinase	NA	NA	NA	NA	NA
AUK68866.1|3042887_3043661_+	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK68867.1|3043690_3044884_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AUK68868.1|3045001_3046012_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AUK68869.1|3046029_3048066_-	transketolase	NA	NA	NA	NA	NA
AUK68870.1|3048260_3049001_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AUK68871.1|3049147_3050050_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68872.1|3050196_3051099_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP017884	Bordetella pertussis strain J074, complete genome	4105450	3074903	3213641	4105450	transposase,holin	Bacillus_virus(11.76%)	121	NA	NA
AUK69971.1|3074903_3075920_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK68887.1|3076057_3077107_-	aldo/keto reductase	NA	NA	NA	NA	NA
AUK68888.1|3077259_3078162_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68889.1|3078257_3078944_-	coenzyme A pyrophosphatase	NA	NA	NA	NA	NA
AUK68890.1|3079193_3079574_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AUK68891.1|3079879_3080752_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AUK68892.1|3080759_3081140_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68893.1|3081293_3082568_-	radical SAM protein	NA	NA	NA	NA	NA
AUK69972.1|3084055_3084964_-	sulfate adenylyltransferase small subunit	NA	NA	NA	NA	NA
AUK68894.1|3085761_3086826_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AUK68895.1|3086850_3087633_-	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
AUK68896.1|3087747_3088422_-	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA	NA
AUK68897.1|3088443_3088647_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68898.1|3088662_3089697_-	sulfate transporter subunit	NA	NA	NA	NA	NA
AUK68899.1|3089886_3090528_-	peroxidase	NA	NA	NA	NA	NA
AUK68900.1|3090610_3092437_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK68901.1|3092680_3093610_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AUK68902.1|3093609_3094359_-	electron transporter RnfB	NA	NA	NA	NA	NA
AUK68903.1|3094430_3095345_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AUK68904.1|3095364_3096510_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AUK68905.1|3096570_3097482_-	cysteine synthase B	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AUK68906.1|3097562_3098513_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69973.1|3098611_3098941_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68907.1|3099230_3100220_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AUK68908.1|3100216_3101158_-	hypothetical protein	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AUK68909.1|3101154_3102375_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AUK68910.1|3102417_3102732_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68911.1|3102923_3103283_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AUK68912.1|3103284_3105000_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AUK68913.1|3105187_3105859_-	cytidylate kinase	NA	NA	NA	NA	NA
AUK68914.1|3105873_3107202_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AUK68915.1|3107198_3108098_-	prephenate dehydrogenase	NA	NA	NA	NA	NA
AUK68916.1|3108184_3109270_-	chorismate mutase	NA	NA	NA	NA	NA
AUK69974.1|3109262_3110393_-	phosphoserine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
AUK68917.1|3110395_3113077_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AUK68918.1|3113447_3114029_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68919.1|3114154_3114880_+	bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase	NA	NA	NA	NA	NA
AUK68920.1|3114876_3115554_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AUK68921.1|3115769_3116951_+	MFS transporter	NA	NA	NA	NA	NA
AUK68922.1|3117723_3117906_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AUK68923.1|3117935_3118886_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69975.1|3119015_3119408_+	hypothetical protein	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AUK68924.1|3119684_3120575_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.3e-05
AUK68925.1|3120720_3121695_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68926.1|3121691_3122594_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68927.1|3122740_3123826_-	DNA polymerase IV	NA	NA	NA	NA	NA
AUK68928.1|3123923_3124334_+	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
AUK68929.1|3124949_3126863_+	S9 family peptidase	NA	NA	NA	NA	NA
AUK68930.1|3126998_3129611_+	penicillin-binding protein	NA	NA	NA	NA	NA
AUK68931.1|3129612_3130347_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AUK68932.1|3130510_3131692_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68933.1|3131688_3131901_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68934.1|3131897_3132878_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK69976.1|3132923_3133751_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AUK69977.1|3133900_3135715_+	metal ABC transporter permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AUK68935.1|3135769_3136153_+	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK68936.1|3136149_3137052_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68937.1|3137212_3137464_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68938.1|3137657_3137873_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68939.1|3137969_3139088_-	N-acylglucosamine 2-epimerase	NA	NA	NA	NA	NA
AUK68940.1|3139207_3139420_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68941.1|3139579_3139789_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68942.1|3139853_3140804_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68943.1|3141980_3143351_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AUK68944.1|3143383_3144175_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68945.1|3144187_3145243_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68946.1|3145268_3146144_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68947.1|3146249_3146498_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68948.1|3146532_3147987_-	carboxylase	NA	NA	NA	NA	NA
AUK68949.1|3147983_3148505_-	acetyl-CoA carboxylase, biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AUK68950.1|3148533_3149886_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68951.1|3150109_3152998_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AUK68952.1|3155142_3156444_+	phospholipase	NA	NA	NA	NA	NA
AUK68953.1|3156458_3157175_-	flagellar brake protein	NA	NA	NA	NA	NA
AUK68954.1|3157456_3158137_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68955.1|3158148_3158316_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68956.1|3158664_3159324_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AUK69978.1|3159722_3161555_+	multidrug ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AUK68957.1|3161551_3162502_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68958.1|3162583_3163195_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68959.1|3163665_3165381_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AUK68960.1|3165391_3165883_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AUK68961.1|3165955_3166972_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AUK68962.1|3167139_3167919_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AUK69979.1|3167937_3168465_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68963.1|3168758_3169028_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AUK68964.1|3169118_3171278_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AUK68965.1|3171398_3172118_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68966.1|3172114_3173065_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK68967.1|3173205_3174423_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AUK68968.1|3174416_3175028_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AUK68969.1|3175661_3176639_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AUK68970.1|3176782_3177529_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AUK68971.1|3177550_3177997_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AUK68972.1|3178784_3181016_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AUK68973.1|3181038_3181839_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68974.1|3182120_3183353_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AUK68975.1|3183463_3184453_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68976.1|3184483_3185872_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68977.1|3185919_3186294_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68978.1|3186284_3187412_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AUK68979.1|3187470_3188454_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK69980.1|3188650_3189667_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK68980.1|3189863_3190688_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK68981.1|3190765_3191656_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68982.1|3191859_3193011_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK68983.1|3193044_3194046_+	peptidase M14	NA	NA	NA	NA	NA
AUK68984.1|3194174_3195146_+	hypothetical protein	NA	NA	NA	NA	NA
AUK68985.1|3195170_3197255_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AUK68986.1|3197321_3198314_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68987.1|3198422_3199757_-	hypothetical protein	NA	NA	NA	NA	NA
AUK68988.1|3199782_3201795_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUK69981.1|3201791_3203840_-	hydantoinase	NA	NA	NA	NA	NA
AUK68989.1|3203943_3204591_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69982.1|3204773_3205226_+	azurin	NA	NA	NA	NA	NA
AUK68990.1|3205269_3205941_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK68991.1|3205955_3207449_-	RND transporter	NA	NA	NA	NA	NA
AUK68992.1|3207445_3210559_-	multidrug efflux protein	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AUK68993.1|3210571_3211678_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK68994.1|3211801_3212470_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK68995.1|3212690_3213641_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP017884	Bordetella pertussis strain J074, complete genome	4105450	3254173	3327287	4105450	transposase	Klosneuvirus(16.67%)	59	NA	NA
AUK69029.1|3254173_3255076_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69030.1|3255072_3256092_-	fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AUK69031.1|3256101_3258810_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AUK69032.1|3258957_3259614_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69033.1|3259712_3260663_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69986.1|3260810_3261704_+	mechanosensitive ion channel protein	NA	NA	NA	NA	NA
AUK69034.1|3261903_3263598_+	acetolactate synthase	NA	NA	NA	NA	NA
AUK69035.1|3263632_3264559_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69987.1|3264627_3265725_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69036.1|3265743_3266607_+	ABC transporter	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AUK69037.1|3266618_3267401_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK69038.1|3267397_3268516_+	deacylase	NA	NA	NA	NA	NA
AUK69039.1|3268512_3270045_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUK69040.1|3270085_3271093_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AUK69988.1|3271324_3271960_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69041.1|3271975_3272998_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK69042.1|3273314_3274049_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69043.1|3274133_3275879_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AUK69044.1|3275875_3276628_+	3-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK69045.1|3276672_3277629_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK69046.1|3277717_3278284_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69047.1|3278291_3279152_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUK69048.1|3279181_3279910_-	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
AUK69049.1|3279941_3280625_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK69050.1|3280822_3281056_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69051.1|3281462_3282377_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK69052.1|3282441_3283350_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69053.1|3283440_3284865_-	CyaE	NA	NA	NA	NA	NA
AUK69054.1|3284866_3286189_-	hemolysin D	NA	NA	NA	NA	NA
AUK69055.1|3286185_3288324_-	peptidase C39	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AUK69056.1|3288401_3293624_-	hemolysin	NA	NA	NA	NA	NA
AUK69989.1|3293708_3293888_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69057.1|3294000_3294558_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AUK69058.1|3294573_3296055_-	succinate-semialdehyde dehydrogenase (NADP(+))	NA	NA	NA	NA	NA
AUK69059.1|3298225_3299563_-	amino acid deaminase	NA	NA	NA	NA	NA
AUK69060.1|3299597_3301595_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUK69061.1|3301612_3303661_-	hydantoinase	NA	NA	NA	NA	NA
AUK69062.1|3303791_3304658_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69063.1|3304926_3305892_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AUK69064.1|3306006_3307155_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AUK69065.1|3307579_3307891_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AUK69066.1|3307924_3308185_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AUK69067.1|3308334_3309468_+	GTPase ObgE	NA	NA	NA	NA	NA
AUK69068.1|3309538_3310675_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AUK69069.1|3310840_3311635_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK69070.1|3311718_3312141_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK69071.1|3312256_3313207_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69990.1|3313389_3313737_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK69072.1|3313809_3316005_+	DNA methylase	NA	NA	NA	NA	NA
AUK69073.1|3316274_3317177_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69074.1|3317289_3317715_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69075.1|3317792_3318764_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69991.1|3318883_3321328_+	ligand-gated channel	NA	NA	NA	NA	NA
AUK69076.1|3321343_3321934_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AUK69077.1|3321980_3322136_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69078.1|3322177_3323080_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69079.1|3323285_3324551_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AUK69080.1|3324584_3325682_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AUK69081.1|3326336_3327287_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP017884	Bordetella pertussis strain J074, complete genome	4105450	3338574	3438687	4105450	transposase,tRNA,terminase,tail	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
AUK69092.1|3338574_3339525_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69093.1|3340256_3340634_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AUK69094.1|3340618_3341320_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69095.1|3341463_3342156_-	mannose-1-phosphate guanylyltransferase	NA	NA	NA	NA	NA
AUK69992.1|3342155_3343196_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AUK69096.1|3343374_3345741_+	LPS biosynthesis protein	NA	NA	NA	NA	NA
AUK69097.1|3345737_3347297_+	molecular chaperone SurA	NA	NA	NA	NA	NA
AUK69098.1|3347321_3348119_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase	NA	NA	NA	NA	NA
AUK69099.1|3348150_3349296_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AUK69100.1|3349400_3350843_+	pyruvate kinase	NA	NA	NA	NA	NA
AUK69101.1|3350845_3352075_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69102.1|3354212_3355163_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69103.1|3356292_3356850_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69104.1|3356825_3357176_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69105.1|3357344_3358139_-	iron ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AUK69106.1|3358135_3359185_-	iron-siderophore ABC transporter permease	NA	NA	NA	NA	NA
AUK69107.1|3359184_3359874_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AUK69108.1|3359960_3360458_-	peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
AUK69109.1|3360489_3361806_-	Tol-Pal system beta propeller repeat protein TolB	NA	NA	NA	NA	NA
AUK69110.1|3361822_3362797_-	protein TolA	NA	NA	NA	NA	NA
AUK69111.1|3362833_3363292_-	protein TolR	NA	NA	NA	NA	NA
AUK69112.1|3363291_3363972_-	protein TolQ	NA	NA	NA	NA	NA
AUK69113.1|3363974_3364403_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK69114.1|3364455_3366186_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AUK69115.1|3366251_3366824_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AUK69116.1|3366804_3367491_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUK69117.1|3367550_3367919_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69118.1|3367846_3368518_+	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AUK69119.1|3368846_3369068_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69120.1|3369067_3369349_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69121.1|3369345_3369861_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69122.1|3369860_3370412_-	lysozyme	NA	NA	NA	NA	NA
AUK69123.1|3370390_3370633_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69124.1|3370637_3371450_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69125.1|3371449_3371713_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69126.1|3371931_3372348_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69127.1|3372352_3376309_-	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AUK69128.1|3376301_3376691_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AUK69129.1|3376687_3377221_-	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AUK69130.1|3377288_3377648_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69131.1|3377657_3380270_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AUK69132.1|3380295_3380586_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AUK69133.1|3380603_3380933_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AUK69134.1|3380942_3381461_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AUK69135.1|3381715_3382216_-	hypothetical protein	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AUK69136.1|3382223_3382646_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69137.1|3382642_3383041_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AUK69138.1|3383037_3383433_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AUK69139.1|3383432_3383633_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69140.1|3383634_3384117_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AUK69141.1|3384179_3384431_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69142.1|3385105_3386056_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69143.1|3386484_3387087_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AUK69144.1|3387209_3387452_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AUK69145.1|3387457_3388570_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	49.7	2.1e-102
AUK69146.1|3388541_3389960_-	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AUK69147.1|3389962_3391240_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AUK69148.1|3391226_3391712_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
AUK69149.1|3392351_3393254_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69150.1|3393319_3393541_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69151.1|3393555_3394254_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69152.1|3394246_3394567_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69993.1|3395046_3395658_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AUK69153.1|3395729_3395936_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69154.1|3396187_3397090_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69155.1|3397236_3398310_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69156.1|3398477_3399272_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK69157.1|3399311_3399836_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69158.1|3399828_3401571_-	sulfite reductase	NA	NA	NA	NA	NA
AUK69159.1|3401780_3402539_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AUK69160.1|3402541_3403249_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AUK69161.1|3403265_3404147_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK69162.1|3404157_3404916_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK69994.1|3404884_3405640_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69163.1|3405709_3407128_+	amidase	NA	NA	NA	NA	NA
AUK69164.1|3407149_3407800_-	carbonate dehydratase	NA	NA	NA	NA	NA
AUK69165.1|3407933_3408269_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69166.1|3408405_3409308_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69167.1|3409384_3411205_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AUK69168.1|3411209_3412283_-	Holliday junction DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AUK69169.1|3412405_3413374_+	serine dehydratase	NA	NA	NA	NA	NA
AUK69170.1|3413447_3414359_+	NAD-dependent dehydratase	NA	NA	NA	NA	NA
AUK69171.1|3414377_3414950_-	Holliday junction DNA helicase RuvA	NA	NA	NA	NA	NA
AUK69172.1|3415030_3415579_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AUK69173.1|3415578_3417168_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AUK69174.1|3417237_3417477_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK69175.1|3417517_3418543_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AUK69176.1|3418608_3419781_-	monooxygenase	NA	NA	NA	NA	NA
AUK69177.1|3419886_3420339_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69178.1|3420348_3421689_-	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
AUK69179.1|3422005_3423043_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69180.1|3423424_3423784_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69995.1|3423867_3424809_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69181.1|3424931_3425834_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69182.1|3426127_3427222_+	porin	NA	NA	NA	NA	NA
AUK69996.1|3427312_3428185_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69183.1|3428206_3429046_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AUK69184.1|3429121_3430639_+	peptidase	NA	NA	NA	NA	NA
AUK69185.1|3430735_3431836_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK69186.1|3431852_3432275_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AUK69187.1|3432297_3432510_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69188.1|3432556_3433477_-	branched chain amino acid aminotransferase	NA	NA	NA	NA	NA
AUK69189.1|3433659_3434409_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69190.1|3434411_3434741_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69191.1|3434947_3436381_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AUK69192.1|3436392_3436776_-	thiol reductase thioredoxin	NA	NA	NA	NA	NA
AUK69193.1|3436837_3437638_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69194.1|3437736_3438687_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP017884	Bordetella pertussis strain J074, complete genome	4105450	3599355	3654329	4105450	transposase	Lake_Baikal_phage(20.0%)	46	NA	NA
AUK69334.1|3599355_3600306_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69335.1|3600422_3601490_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
AUK69336.1|3601565_3604694_-	ribonuclease E/G	NA	NA	NA	NA	NA
AUK69337.1|3605261_3606167_+	RNA pseudouridine synthase	NA	NA	NA	NA	NA
AUK69338.1|3606169_3606841_+	HAD family hydrolase	NA	NA	NA	NA	NA
AUK69339.1|3606997_3607957_+	mononuclear molybdenum enzyme YedY	NA	NA	NA	NA	NA
AUK69340.1|3607964_3608627_+	sulfoxide reductase heme-binding subunit YedZ	NA	NA	NA	NA	NA
AUK69341.1|3608623_3609574_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69342.1|3609695_3610949_+	carnitine dehydratase	NA	NA	NA	NA	NA
AUK69343.1|3610926_3611889_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69344.1|3612020_3612515_+	dehydratase	NA	NA	NA	NA	NA
AUK69345.1|3612514_3613747_+	mesaconyl-CoA isomerase	NA	NA	NA	NA	NA
AUK70005.1|3613881_3614106_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69346.1|3614175_3614406_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69347.1|3614492_3614774_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69348.1|3614760_3615747_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69349.1|3615890_3616295_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69350.1|3616436_3619823_+	molybdopterin oxidoreductase	NA	NA	NA	NA	NA
AUK69351.1|3619853_3621317_+	Short chain fatty acid transporter	NA	NA	NA	NA	NA
AUK69352.1|3621337_3622954_+	1-pyrroline-5-carboxylate dehydrogenase	NA	NA	NA	NA	NA
AUK69353.1|3623039_3623699_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69354.1|3623728_3624169_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69355.1|3624679_3624883_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
AUK69356.1|3625058_3625964_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69357.1|3626110_3627013_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69358.1|3627111_3628062_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69359.1|3629843_3631037_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK69360.1|3631102_3632131_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK69361.1|3632157_3633330_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK69362.1|3633455_3634433_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69363.1|3634443_3635415_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK69364.1|3635481_3636267_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK69365.1|3636259_3637492_-	CoA transferase	NA	NA	NA	NA	NA
AUK69366.1|3637687_3638443_-	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AUK69367.1|3638553_3639072_+	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AUK70006.1|3640860_3642261_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69368.1|3642360_3642705_+	TIGR01244 family protein	NA	NA	NA	NA	NA
AUK69369.1|3642793_3643264_+	universal stress protein	NA	NA	NA	NA	NA
AUK69370.1|3643674_3644073_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AUK69371.1|3644204_3645107_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69372.1|3647599_3648334_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AUK69373.1|3648743_3648923_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70007.1|3649113_3650427_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK69374.1|3650442_3651954_-	TRAP ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK69375.1|3651950_3653156_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
AUK69376.1|3653351_3654329_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP017884	Bordetella pertussis strain J074, complete genome	4105450	3744142	3798337	4105450	transposase,protease	Paramecium_bursaria_Chlorella_virus(14.29%)	53	NA	NA
AUK69465.1|3744142_3745045_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69466.1|3745215_3745944_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
AUK69467.1|3746040_3747219_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AUK69468.1|3747215_3748049_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	NA	NA	NA	NA
AUK69469.1|3748085_3748826_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK69470.1|3748945_3750121_-	dihydroorotase	NA	NA	NA	NA	NA
AUK69471.1|3750117_3751071_-	aspartate carbamoyltransferase	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
AUK69472.1|3751084_3751486_-	Holliday junction DNA helicase RuvA	NA	NA	NA	NA	NA
AUK70012.1|3751478_3752084_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70013.1|3752171_3752336_-	rubredoxin	NA	NA	NA	NA	NA
AUK69473.1|3752452_3753301_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AUK69474.1|3753297_3753951_+	thiamine-phosphate diphosphorylase	NA	NA	NA	NA	NA
AUK69475.1|3753967_3755251_+	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA	NA
AUK69476.1|3755490_3757116_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69477.1|3757209_3757611_-	enamine deaminase RidA	NA	NA	NA	NA	NA
AUK69478.1|3757635_3758070_-	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK69479.1|3758071_3759721_-	2-aminobenzoate-CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
AUK69480.1|3759761_3760931_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK69481.1|3760933_3761797_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK69482.1|3765160_3765865_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
AUK69483.1|3765858_3766653_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
AUK69484.1|3766649_3767615_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK69485.1|3767618_3768539_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK69486.1|3768635_3769799_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK69487.1|3770021_3770912_+	esterase	NA	NA	NA	NA	NA
AUK69488.1|3770915_3771419_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69489.1|3771461_3772460_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69490.1|3772456_3773407_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69491.1|3773522_3773783_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69492.1|3774022_3774925_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69493.1|3774984_3775545_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AUK69494.1|3777047_3777929_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69495.1|3778042_3779245_+	MFS transporter	NA	NA	NA	NA	NA
AUK69496.1|3779373_3781233_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AUK69497.1|3781310_3782120_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK69498.1|3782190_3783192_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69499.1|3783223_3784084_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK69500.1|3784283_3785288_+	acetylesterase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AUK69501.1|3785284_3786871_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK69502.1|3786879_3787806_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AUK69503.1|3787828_3788455_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69504.1|3788553_3789504_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70014.1|3789500_3790637_-	2-alkenal reductase	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AUK69505.1|3790690_3791467_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AUK69506.1|3791491_3791950_-	large-conductance mechanosensitive channel protein	NA	NA	NA	NA	NA
AUK70015.1|3792089_3792731_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AUK69507.1|3792795_3794178_+	cytochrome b	NA	NA	NA	NA	NA
AUK70016.1|3794203_3795052_+	cytochrome c1	NA	NA	NA	NA	NA
AUK69508.1|3795210_3795822_+	glutathione S-transferase	NA	NA	NA	NA	NA
AUK69509.1|3795831_3796281_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AUK69510.1|3796799_3796940_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69511.1|3796947_3797109_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AUK69512.1|3797434_3798337_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP017884	Bordetella pertussis strain J074, complete genome	4105450	3808953	3869794	4105450	transposase,tRNA	uncultured_Caudovirales_phage(28.57%)	52	NA	NA
AUK69522.1|3808953_3809856_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69523.1|3810634_3811615_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK69524.1|3811628_3812753_+	carnitine dehydratase	NA	NA	NA	NA	NA
AUK69525.1|3812760_3814515_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK69526.1|3814621_3815521_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69527.1|3815585_3816569_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK69528.1|3816704_3817685_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69529.1|3817701_3819093_-	fumarate hydratase, class II	NA	NA	NA	NA	NA
AUK69530.1|3819244_3819781_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AUK69531.1|3819711_3821097_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
AUK70017.1|3821239_3821860_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69532.1|3821964_3823854_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AUK69533.1|3823850_3824792_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AUK69534.1|3824897_3825947_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AUK69535.1|3826199_3826901_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AUK69536.1|3826897_3827596_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69537.1|3827596_3828952_+	poly(A) polymerase	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AUK69538.1|3828948_3829440_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AUK69539.1|3829458_3830415_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70018.1|3831825_3833085_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69540.1|3834098_3835142_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK69541.1|3835185_3835929_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69542.1|3835945_3836701_-	gamma-hydroxybutyrate dehydrogenase	NA	D2K0C8	Staphylococcus_phage	55.0	4.6e-32
AUK69543.1|3836950_3837361_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AUK69544.1|3838310_3839108_+	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK69545.1|3839206_3840157_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69546.1|3840153_3841104_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69547.1|3841190_3842093_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69548.1|3842255_3843257_-	restriction endonuclease	NA	NA	NA	NA	NA
AUK69549.1|3843347_3843914_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AUK69550.1|3844232_3846146_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
AUK69551.1|3846187_3847618_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AUK69552.1|3847730_3849143_-	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AUK69553.1|3849159_3849855_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69554.1|3850073_3851024_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69555.1|3851048_3851948_-	virginiamycin B lyase	NA	NA	NA	NA	NA
AUK69556.1|3852102_3852651_+	GNAT family N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AUK69557.1|3852689_3853409_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AUK69558.1|3853579_3856423_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AUK69559.1|3857016_3859812_+	peptidase S8	NA	NA	NA	NA	NA
AUK69560.1|3860269_3861202_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK69561.1|3861313_3862663_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK69562.1|3862694_3863420_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK70019.1|3863470_3864253_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69563.1|3864451_3865138_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK69564.1|3865137_3865782_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK69565.1|3865838_3866114_+	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AUK69566.1|3866139_3866436_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69567.1|3866481_3867261_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AUK70020.1|3867266_3868307_+	cyclase	NA	NA	NA	NA	NA
AUK69568.1|3868411_3868735_-	PsiF repeat family protein	NA	NA	NA	NA	NA
AUK69569.1|3868891_3869794_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
CP017884	Bordetella pertussis strain J074, complete genome	4105450	4027621	4081005	4105450	transposase	Planktothrix_phage(40.0%)	45	NA	NA
AUK69709.1|4027621_4028572_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69710.1|4028741_4029968_+	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase	NA	NA	NA	NA	NA
AUK69711.1|4030167_4031034_+	AAA family ATPase	NA	NA	NA	NA	NA
AUK69712.1|4031026_4031989_+	NUDIX hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AUK69713.1|4032089_4033040_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69714.1|4033186_4034089_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69715.1|4034235_4035138_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69716.1|4035134_4036628_-	RND transporter	NA	NA	NA	NA	NA
AUK69717.1|4036624_4039732_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AUK69718.1|4039728_4042797_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AUK69719.1|4042793_4044044_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK70030.1|4044224_4044977_-	cell division protein ZapD	NA	NA	NA	NA	NA
AUK70031.1|4045018_4045663_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AUK69720.1|4045671_4046511_-	prepilin peptidase	NA	NA	NA	NA	NA
AUK69721.1|4046751_4047495_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69722.1|4047577_4047925_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUK69723.1|4048022_4048865_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AUK69724.1|4048909_4049797_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AUK69725.1|4049823_4050012_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AUK69726.1|4050109_4051567_+	MFS transporter	NA	NA	NA	NA	NA
AUK69727.1|4051553_4053080_+	glycerol kinase	NA	NA	NA	NA	NA
AUK69728.1|4053098_4053566_-	hypothetical protein	NA	NA	NA	NA	NA
AUK69729.1|4053565_4054588_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK69730.1|4054708_4055449_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AUK69731.1|4055503_4056604_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK69732.1|4056605_4057796_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK69733.1|4057915_4058932_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AUK69734.1|4059250_4059922_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AUK69735.1|4059918_4060827_+	permease	NA	NA	NA	NA	NA
AUK69736.1|4061038_4061686_+	chemotaxis protein CheD	NA	NA	NA	NA	NA
AUK70032.1|4065546_4066614_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AUK69737.1|4066624_4067434_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK69738.1|4067523_4068297_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK69739.1|4068527_4069430_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK69740.1|4069441_4070341_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69741.1|4070330_4071485_+	acyl-CoA transferase	NA	NA	NA	NA	NA
AUK69742.1|4071524_4072937_+	hypothetical protein	NA	NA	NA	NA	NA
AUK69743.1|4072959_4073928_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK69744.1|4073929_4074754_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK69745.1|4074750_4075512_+	nitrobenzoate reductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
AUK69746.1|4075592_4076279_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK69747.1|4076476_4077460_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AUK69748.1|4077456_4078236_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK70033.1|4078323_4079556_+	CoA transferase	NA	NA	NA	NA	NA
AUK69749.1|4080102_4081005_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
