The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP017925	Bordetella pertussis strain J203, complete genome	4104273	0	64055	4104273	tRNA,transposase,protease	Natrialba_phage(12.5%)	57	NA	NA
AUK80911.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AUK80912.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
AUK80913.1|2605_3403_+	chromosome partitioning protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AUK80914.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK80915.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AUK80916.1|5124_5910_+	L-asparaginase	NA	NA	NA	NA	NA
AUK80917.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80918.1|6721_7912_+	translation elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AUK80919.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AUK80920.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AUK80921.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AUK80922.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AUK80923.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AUK80924.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AUK80925.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AUK80926.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AUK84296.1|20126_20531_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80927.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80928.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AUK84297.1|26575_27286_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80929.1|27282_28185_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80930.1|28314_28614_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80931.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80932.1|29141_30359_-	thiolase	NA	NA	NA	NA	NA
AUK80933.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AUK80934.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84298.1|32214_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK80935.1|33048_34470_+	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
AUK80936.1|34673_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80937.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AUK80938.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AUK80939.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AUK80940.1|40060_40600_+	D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AUK80941.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK80942.1|41318_42212_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80943.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUK80944.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AUK80945.1|43346_43526_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80946.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84299.1|45224_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80947.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUK80948.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80949.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AUK80950.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AUK80951.1|50189_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80952.1|51134_52391_+	muropeptide transporter AmpG	NA	NA	NA	NA	NA
AUK80953.1|53622_54357_-	glutamate racemase	NA	NA	NA	NA	NA
AUK80954.1|54362_54953_-	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AUK80955.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK80956.1|55663_56425_-	glutamate ABC transporter permease	NA	NA	NA	NA	NA
AUK80957.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK80958.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80959.1|59248_60475_-	serine kinase HipA	NA	NA	NA	NA	NA
AUK80960.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK84300.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80961.1|62442_63417_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80962.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
>prophage 2
CP017925	Bordetella pertussis strain J203, complete genome	4104273	69133	122073	4104273	tRNA,transposase	Planktothrix_phage(20.0%)	53	NA	NA
AUK80968.1|69133_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80969.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AUK80970.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AUK80971.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK80972.1|74357_74939_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AUK80973.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80974.1|75280_76123_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80975.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AUK80976.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84301.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80977.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AUK80978.1|82822_83527_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AUK80979.1|83523_84630_-	glycosyl transferase	NA	NA	NA	NA	NA
AUK80980.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AUK80981.1|85481_86669_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AUK80982.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AUK80983.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AUK80984.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AUK80985.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUK80986.1|90793_91846_-	oxidoreductase	NA	NA	NA	NA	NA
AUK80987.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AUK80988.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AUK80989.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80990.1|94468_95272_-	pantothenate kinase	NA	NA	NA	NA	NA
AUK80991.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AUK80992.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK80993.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AUK80994.1|98332_98800_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80995.1|98889_99111_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80996.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80997.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK84302.1|100607_101786_+	peptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	5.8e-66
AUK80998.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUK80999.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AUK81000.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AUK81001.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AUK81002.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AUK81003.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AUK81004.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AUK81005.1|107427_108330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81006.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK81007.1|110552_111182_-	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
AUK81008.1|111243_111927_-	cell division protein	NA	NA	NA	NA	NA
AUK81009.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK84303.1|113906_114254_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81010.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81011.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK81012.1|116036_116837_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK81013.1|116833_117709_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK81014.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK81015.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AUK81016.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AUK81017.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP017925	Bordetella pertussis strain J203, complete genome	4104273	164895	301504	4104273	tRNA,transposase,protease	Klosneuvirus(10.53%)	118	NA	NA
AUK81053.1|164895_165846_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81054.1|167289_168192_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81055.1|168169_168799_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81056.1|169081_170512_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
AUK81057.1|170545_171175_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AUK81058.1|171223_172831_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AUK81059.1|172867_173539_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84306.1|173620_174097_-	bacterioferritin	NA	NA	NA	NA	NA
AUK81060.1|174351_175254_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81061.1|176369_176897_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81062.1|176988_177804_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81063.1|177864_178599_+	sulfurtransferase	NA	NA	NA	NA	NA
AUK81064.1|178636_180715_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AUK81065.1|180964_181237_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81066.1|181338_182424_+	ATP-binding protein	NA	NA	NA	NA	NA
AUK81067.1|182427_184332_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81068.1|184328_188003_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81069.1|188063_188627_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AUK81070.1|188634_189057_-	glyoxalase	NA	NA	NA	NA	NA
AUK81071.1|189084_189504_-	glyoxalase	NA	NA	NA	NA	NA
AUK81072.1|189532_189880_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK84307.1|190153_190603_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81073.1|190757_193028_+	lysine decarboxylase	NA	NA	NA	NA	NA
AUK81074.1|193103_194309_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81075.1|194454_195357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81076.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
AUK81077.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AUK81078.1|197379_198480_+	glycine cleavage system protein T	NA	NA	NA	NA	NA
AUK81079.1|198561_198936_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AUK81080.1|198995_201860_+	glycine dehydrogenase (aminomethyl-transferring)	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AUK81081.1|202004_202745_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81082.1|202814_204026_+	formyl-CoA transferase	NA	NA	NA	NA	NA
AUK81083.1|204054_205023_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81084.1|205684_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81085.1|206743_207067_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AUK84308.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
AUK81086.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AUK81087.1|209042_209339_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81088.1|209364_209640_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AUK81089.1|209696_210341_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK81090.1|210340_211027_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK84309.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81091.1|212058_212784_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK81092.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK81093.1|214276_215209_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK81094.1|215666_218462_-	peptidase S8	NA	NA	NA	NA	NA
AUK81095.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AUK81096.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AUK81097.1|222827_223376_-	GNAT family N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AUK81098.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AUK81099.1|224454_225405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81100.1|225623_226319_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81101.1|226335_227748_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AUK81102.1|227860_229291_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AUK81103.1|229332_231246_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
AUK81104.1|231564_232131_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AUK81105.1|232221_233223_+	restriction endonuclease	NA	NA	NA	NA	NA
AUK81106.1|233337_234288_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81107.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81108.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81109.1|236370_237168_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK81110.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AUK81111.1|238777_239533_+	gamma-hydroxybutyrate dehydrogenase	NA	D2K0C8	Staphylococcus_phage	55.0	4.6e-32
AUK81112.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81113.1|240336_241380_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK84310.1|242393_243653_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81114.1|245063_246020_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81115.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AUK81116.1|246526_247882_-	poly(A) polymerase	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AUK81117.1|247882_248581_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81118.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AUK81119.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AUK81120.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AUK81121.1|251624_253514_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AUK84311.1|253618_254239_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81122.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
AUK81123.1|255697_256234_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AUK81124.1|256385_257777_+	fumarate hydratase, class II	NA	NA	NA	NA	NA
AUK81125.1|257793_258774_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81126.1|258909_259893_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK81127.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81128.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK81129.1|262725_263850_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK81130.1|263863_264844_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK81131.1|265574_266525_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81132.1|266539_266911_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81133.1|267084_267630_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81134.1|267755_269333_+	cytochrome d terminal oxidase subunit 1	NA	NA	NA	NA	NA
AUK81135.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AUK81136.1|270516_270642_+	cyd operon protein YbgT	NA	NA	NA	NA	NA
AUK81137.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AUK81138.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AUK81139.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
AUK81140.1|275819_276098_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81141.1|277141_278092_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81142.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AUK81143.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81144.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AUK81145.1|279656_280268_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK81146.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
AUK81147.1|281300_282683_-	cytochrome b	NA	NA	NA	NA	NA
AUK81148.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AUK81149.1|283528_283987_+	large-conductance mechanosensitive channel protein	NA	NA	NA	NA	NA
AUK81150.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AUK84312.1|284841_285978_+	2-alkenal reductase	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AUK81151.1|285974_286925_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81152.1|287023_287650_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81153.1|287672_288599_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AUK81154.1|288607_290194_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK81155.1|290190_291195_-	acetylesterase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AUK81156.1|291394_292255_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK81157.1|292286_293288_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81158.1|293358_294168_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK81159.1|294245_296105_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AUK81160.1|296233_297436_-	MFS transporter	NA	NA	NA	NA	NA
AUK81161.1|297549_298431_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81162.1|299933_300494_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AUK81163.1|300553_301504_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP017925	Bordetella pertussis strain J203, complete genome	4104273	390858	448367	4104273	transposase	Orpheovirus(14.29%)	50	NA	NA
AUK81250.1|390858_391809_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81251.1|391951_392863_+	reductase	NA	NA	NA	NA	NA
AUK81252.1|392859_393108_+	NrdH-redoxin	NA	NA	NA	NA	NA
AUK81253.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
AUK81254.1|394382_395378_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81255.1|395400_396621_-	acyl-CoA transferase	NA	NA	NA	NA	NA
AUK81256.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81257.1|397258_397651_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81258.1|397539_398892_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81259.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84318.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
AUK81260.1|401158_402142_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81261.1|402818_403589_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK81262.1|403585_404764_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK81263.1|404931_406638_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AUK81264.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81265.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
AUK81266.1|409210_410203_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81267.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81268.1|411331_412312_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81269.1|412387_413290_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81270.1|413426_414341_+	EamA family transporter	NA	NA	NA	NA	NA
AUK81271.1|414337_414997_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81272.1|415086_416010_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AUK81273.1|416015_416471_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81274.1|416467_417571_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81275.1|417758_419378_-	dolichyl-phosphate-mannose--protein mannosyltransferase	NA	NA	NA	NA	NA
AUK81276.1|419374_420433_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AUK81277.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK81278.1|421149_422127_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81279.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AUK81280.1|423524_425036_+	TRAP ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK84319.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK81281.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81282.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AUK81283.1|430371_431274_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81284.1|431405_431804_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AUK81285.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
AUK81286.1|432773_433118_-	TIGR01244 family protein	NA	NA	NA	NA	NA
AUK81287.1|433217_434618_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81288.1|436406_436925_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AUK81289.1|437035_437791_+	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AUK81290.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
AUK81291.1|439211_439997_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK81292.1|440063_441035_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK81293.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81294.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK81295.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK81296.1|444441_445635_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK81297.1|447416_448367_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP017925	Bordetella pertussis strain J203, complete genome	4104273	619753	720217	4104273	tRNA,terminase,tail,transposase	uncultured_Caudovirales_phage(14.29%)	110	NA	NA
AUK81449.1|619753_620704_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81450.1|621402_621786_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81451.1|621843_622446_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84326.1|622463_622865_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81452.1|622980_623892_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81453.1|623888_624470_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AUK84327.1|625273_625999_+	arginyltransferase	NA	NA	NA	NA	NA
AUK81454.1|626039_627089_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AUK81455.1|627236_627815_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AUK81456.1|628201_629179_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK81457.1|629272_633667_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AUK81458.1|633867_634716_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81459.1|634874_635687_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AUK81460.1|635742_636693_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81461.1|636791_637592_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81462.1|637653_638037_+	thiol reductase thioredoxin	NA	NA	NA	NA	NA
AUK81463.1|638048_639482_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AUK81464.1|639688_640018_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81465.1|640020_640770_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81466.1|640952_641873_+	branched chain amino acid aminotransferase	NA	NA	NA	NA	NA
AUK81467.1|641919_642132_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81468.1|642154_642577_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AUK81469.1|642593_643694_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK81470.1|643790_645308_-	peptidase	NA	NA	NA	NA	NA
AUK81471.1|645383_646223_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AUK84328.1|646244_647117_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81472.1|647207_648302_-	porin	NA	NA	NA	NA	NA
AUK81473.1|648595_649498_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84329.1|649620_650562_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81474.1|650645_651005_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81475.1|651386_652424_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81476.1|652740_654081_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
AUK81477.1|654090_654543_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81478.1|654648_655821_+	monooxygenase	NA	NA	NA	NA	NA
AUK81479.1|655886_656912_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AUK81480.1|656952_657192_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK81481.1|657261_658851_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AUK81482.1|658850_659399_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AUK81483.1|659479_660052_+	Holliday junction DNA helicase RuvA	NA	NA	NA	NA	NA
AUK81484.1|660070_660982_-	NAD-dependent dehydratase	NA	NA	NA	NA	NA
AUK81485.1|661055_662024_-	serine dehydratase	NA	NA	NA	NA	NA
AUK81486.1|662146_663220_+	Holliday junction DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AUK81487.1|663224_665045_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AUK81488.1|665121_666024_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81489.1|666160_666496_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81490.1|666629_667280_+	carbonate dehydratase	NA	NA	NA	NA	NA
AUK81491.1|667301_668720_-	amidase	NA	NA	NA	NA	NA
AUK81492.1|668789_669545_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84330.1|669513_670272_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK81493.1|670282_671164_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK81494.1|671180_671888_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AUK81495.1|671890_672649_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AUK81496.1|672858_674601_+	sulfite reductase	NA	NA	NA	NA	NA
AUK81497.1|674593_675118_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81498.1|675157_675952_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK81499.1|676119_677193_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81500.1|677291_678242_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81501.1|678493_678700_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84331.1|678771_679383_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AUK81502.1|679862_680183_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81503.1|680175_680874_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81504.1|680888_681110_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81505.1|681127_682078_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81506.1|682717_683203_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
AUK81507.1|683189_684467_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AUK81508.1|684469_685888_+	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AUK81509.1|685859_686972_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	49.7	2.1e-102
AUK81510.1|686977_687220_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AUK81511.1|687342_687945_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AUK81512.1|688373_689324_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81513.1|689998_690250_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81514.1|690312_690795_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AUK81515.1|690796_690997_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81516.1|690996_691392_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AUK81517.1|691388_691787_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AUK81518.1|691783_692206_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81519.1|692213_692714_+	hypothetical protein	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AUK81520.1|692968_693487_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AUK81521.1|693496_693826_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AUK81522.1|693843_694134_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AUK81523.1|694159_696772_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AUK81524.1|696781_697141_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81525.1|697208_697742_+	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AUK81526.1|697738_698128_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AUK81527.1|698120_702077_+	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AUK81528.1|702081_702498_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81529.1|702716_702980_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AUK81530.1|702979_703792_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81531.1|703796_704039_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81532.1|704017_704569_+	lysozyme	NA	NA	NA	NA	NA
AUK81533.1|704568_705084_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81534.1|705080_705362_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81535.1|705361_705583_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81536.1|705911_706583_-	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AUK81537.1|706510_706879_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81538.1|706938_707625_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AUK81539.1|707605_708178_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AUK81540.1|708243_709974_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AUK81541.1|710026_710455_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK81542.1|710457_711138_+	protein TolQ	NA	NA	NA	NA	NA
AUK81543.1|711137_711596_+	protein TolR	NA	NA	NA	NA	NA
AUK81544.1|711632_712607_+	protein TolA	NA	NA	NA	NA	NA
AUK81545.1|712623_713940_+	Tol-Pal system beta propeller repeat protein TolB	NA	NA	NA	NA	NA
AUK81546.1|713971_714469_+	peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
AUK81547.1|714555_715245_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AUK81548.1|715244_716294_+	iron-siderophore ABC transporter permease	NA	NA	NA	NA	NA
AUK81549.1|716290_717085_+	iron ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AUK81550.1|717253_717604_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81551.1|717579_718137_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81552.1|719266_720217_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP017925	Bordetella pertussis strain J203, complete genome	4104273	747142	820255	4104273	transposase	Streptococcus_phage(16.67%)	59	NA	NA
AUK81573.1|747142_748093_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81574.1|748747_749845_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AUK81575.1|749878_751144_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AUK81576.1|751349_752252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81577.1|752293_752449_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81578.1|752495_753086_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AUK84333.1|753101_755546_-	ligand-gated channel	NA	NA	NA	NA	NA
AUK81579.1|755665_756637_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81580.1|756768_757293_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AUK81581.1|757252_758203_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81582.1|758424_760623_-	DNA methylase	NA	NA	NA	NA	NA
AUK84334.1|760691_761039_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK81583.1|761221_762172_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81584.1|762287_762710_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK81585.1|762793_763588_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK81586.1|763753_764890_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AUK81587.1|764960_766094_-	GTPase ObgE	NA	NA	NA	NA	NA
AUK81588.1|766243_766504_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AUK81589.1|766537_766849_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AUK81590.1|767273_768422_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AUK81591.1|768536_769502_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AUK81592.1|769770_770637_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81593.1|770767_772816_+	hydantoinase	NA	NA	NA	NA	NA
AUK81594.1|772833_774831_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUK81595.1|774865_776203_+	amino acid deaminase	NA	NA	NA	NA	NA
AUK81596.1|778373_779855_+	succinate-semialdehyde dehydrogenase (NADP(+))	NA	NA	NA	NA	NA
AUK81597.1|779870_780428_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AUK84335.1|780540_780720_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81598.1|780804_786027_+	hemolysin	NA	NA	NA	NA	NA
AUK81599.1|786104_788243_+	peptidase C39	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AUK81600.1|788239_789562_+	hemolysin D	NA	NA	NA	NA	NA
AUK81601.1|789563_790988_+	CyaE	NA	NA	NA	NA	NA
AUK81602.1|791078_791987_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81603.1|792051_792966_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK81604.1|793372_793606_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81605.1|793803_794487_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK81606.1|794518_795247_+	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
AUK81607.1|795276_796137_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUK81608.1|796144_796711_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81609.1|796799_797756_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK81610.1|797800_798553_-	3-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK81611.1|798549_800295_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AUK81612.1|800379_801114_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81613.1|801430_802453_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK84336.1|802468_803104_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81614.1|803335_804343_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AUK81615.1|804383_805916_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUK81616.1|805912_807031_-	deacylase	NA	NA	NA	NA	NA
AUK81617.1|807027_807810_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK81618.1|807821_808685_-	ABC transporter	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AUK84337.1|808703_809801_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81619.1|809869_810796_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81620.1|810830_812525_-	acetolactate synthase	NA	NA	NA	NA	NA
AUK81621.1|812724_813618_-	mechanosensitive ion channel protein	NA	NA	NA	NA	NA
AUK81622.1|813765_814716_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81623.1|814814_815471_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81624.1|815618_818327_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AUK81625.1|818336_819356_+	fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AUK81626.1|819352_820255_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP017925	Bordetella pertussis strain J203, complete genome	4104273	858746	977915	4104273	holin,transposase	Bacillus_phage(13.33%)	102	NA	NA
AUK81659.1|858746_860705_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AUK81660.1|860787_861738_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81661.1|861958_862627_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK81662.1|862750_863857_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK81663.1|863869_866983_+	multidrug efflux protein	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AUK81664.1|866979_868473_+	RND transporter	NA	NA	NA	NA	NA
AUK81665.1|868487_869159_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84341.1|869202_869655_-	azurin	NA	NA	NA	NA	NA
AUK81666.1|869837_870485_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84342.1|870588_872637_+	hydantoinase	NA	NA	NA	NA	NA
AUK81667.1|872633_874646_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUK81668.1|874671_876006_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81669.1|876114_877107_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81670.1|877173_879258_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AUK81671.1|879282_880254_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81672.1|880382_881384_-	peptidase M14	NA	NA	NA	NA	NA
AUK81673.1|881417_882569_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK81674.1|882772_883663_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81675.1|883740_884565_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK81676.1|884761_885778_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK81677.1|885974_886958_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK81678.1|887016_888144_-	argininosuccinate lyase	NA	NA	NA	NA	NA
AUK81679.1|888134_888509_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81680.1|888556_889945_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81681.1|889975_890965_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81682.1|891075_892308_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AUK81683.1|892589_893390_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81684.1|893412_895644_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AUK81685.1|896431_896878_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AUK81686.1|896899_897646_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AUK81687.1|897789_898767_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AUK81688.1|899400_900012_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AUK81689.1|900005_901223_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AUK81690.1|901363_902314_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81691.1|902310_903030_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81692.1|903150_905310_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AUK81693.1|905400_905670_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
AUK84343.1|905963_906491_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81694.1|906509_907289_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AUK81695.1|907456_908473_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AUK81696.1|908545_909037_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AUK81697.1|909047_910763_-	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AUK81698.1|911233_911845_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81699.1|911926_912877_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81700.1|912975_913926_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81701.1|913922_915755_-	multidrug ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AUK81702.1|916153_916813_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AUK81703.1|917161_917329_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81704.1|917340_918021_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81705.1|918302_919019_+	flagellar brake protein	NA	NA	NA	NA	NA
AUK81706.1|919033_920335_-	phospholipase	NA	NA	NA	NA	NA
AUK81707.1|922479_925368_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AUK81708.1|925591_926944_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81709.1|926972_927494_+	acetyl-CoA carboxylase, biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AUK81710.1|927490_928945_+	carboxylase	NA	NA	NA	NA	NA
AUK81711.1|928979_929228_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81712.1|929333_930209_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81713.1|930234_931290_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81714.1|931302_932094_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81715.1|932126_933497_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AUK81716.1|934673_935624_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81717.1|935688_935898_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81718.1|936057_936270_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81719.1|936389_937508_+	N-acylglucosamine 2-epimerase	NA	NA	NA	NA	NA
AUK81720.1|937604_937820_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81721.1|938013_938265_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81722.1|938425_939328_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81723.1|939324_939708_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK81724.1|939762_941577_-	metal ABC transporter permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AUK84344.1|941726_942554_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AUK81725.1|942599_943580_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK81726.1|943576_943789_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81727.1|943785_944967_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81728.1|945130_945865_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AUK81729.1|945866_948479_-	penicillin-binding protein	NA	NA	NA	NA	NA
AUK81730.1|948614_950528_-	S9 family peptidase	NA	NA	NA	NA	NA
AUK81731.1|951143_951554_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
AUK81732.1|951651_952737_+	DNA polymerase IV	NA	NA	NA	NA	NA
AUK81733.1|952835_953786_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81734.1|953782_954757_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81735.1|954902_955793_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.3e-05
AUK84345.1|956069_956462_-	hypothetical protein	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AUK81736.1|956591_957542_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81737.1|957571_957754_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AUK81738.1|958526_959708_-	MFS transporter	NA	NA	NA	NA	NA
AUK81739.1|959923_960601_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AUK81740.1|960597_961323_-	bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase	NA	NA	NA	NA	NA
AUK81741.1|961448_962030_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81742.1|962400_965082_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AUK84346.1|965084_966215_+	phosphoserine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
AUK81743.1|966207_967293_+	chorismate mutase	NA	NA	NA	NA	NA
AUK81744.1|967379_968279_+	prephenate dehydrogenase	NA	NA	NA	NA	NA
AUK81745.1|968275_969604_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AUK81746.1|969618_970290_+	cytidylate kinase	NA	NA	NA	NA	NA
AUK81747.1|970477_972193_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AUK81748.1|972194_972554_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AUK81749.1|972745_973060_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81750.1|973102_974323_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AUK81751.1|974319_975261_+	hypothetical protein	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AUK81752.1|975257_976247_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AUK84347.1|976536_976866_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81753.1|976964_977915_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP017925	Bordetella pertussis strain J203, complete genome	4104273	997315	1069832	4104273	tRNA,transposase	Enterococcus_phage(14.29%)	59	NA	NA
AUK81771.1|997315_998266_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81772.1|998370_999420_+	aldo/keto reductase	NA	NA	NA	NA	NA
AUK81773.1|999557_1000574_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK81774.1|1002082_1002655_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AUK81775.1|1002714_1003446_+	pseudouridylate synthase	NA	NA	NA	NA	NA
AUK84349.1|1003497_1004415_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81776.1|1005222_1008402_+	multidrug efflux RND transporter permease	NA	NA	NA	NA	NA
AUK81777.1|1008398_1009781_+	multidrug transporter	NA	NA	NA	NA	NA
AUK81778.1|1009850_1010102_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81779.1|1010247_1010862_-	SCO family protein	NA	NA	NA	NA	NA
AUK84350.1|1011048_1013109_-	oligopeptidase A	NA	NA	NA	NA	NA
AUK81780.1|1013238_1014090_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AUK81781.1|1014086_1014713_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AUK81782.1|1014709_1016464_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AUK81783.1|1016756_1019462_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AUK81784.1|1019474_1021136_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AUK81785.1|1021148_1022939_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AUK81786.1|1023160_1024336_-	flagellin	NA	NA	NA	NA	NA
AUK81787.1|1024378_1025281_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81788.1|1025427_1026168_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AUK81789.1|1026362_1028399_+	transketolase	NA	NA	NA	NA	NA
AUK81790.1|1028416_1029427_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AUK81791.1|1029544_1030738_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AUK81792.1|1030767_1031541_-	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK81793.1|1031537_1032728_-	acetate kinase	NA	NA	NA	NA	NA
AUK81794.1|1032753_1033692_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AUK84351.1|1033688_1036037_-	3-hydroxyalkanoate synthetase	NA	NA	NA	NA	NA
AUK81795.1|1036191_1036833_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK81796.1|1038346_1038895_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AUK81797.1|1038913_1039399_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK81798.1|1039576_1040515_+	cytochrome C biogenesis protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AUK81799.1|1040517_1040835_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81800.1|1040880_1041825_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81801.1|1043505_1044156_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AUK81802.1|1044209_1044545_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84352.1|1044559_1045402_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AUK81803.1|1045418_1045700_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81804.1|1045773_1046037_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AUK81805.1|1046280_1047231_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81806.1|1047529_1048267_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AUK81807.1|1048702_1049026_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AUK81808.1|1049060_1049621_+	transcriptional regulator FlhC	NA	NA	NA	NA	NA
AUK81809.1|1049741_1050617_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AUK81810.1|1050629_1051577_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
AUK81811.1|1051678_1051972_+	two-component system response regulator	NA	NA	NA	NA	NA
AUK81812.1|1051998_1054056_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AUK81813.1|1054070_1054571_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AUK81814.1|1054644_1056351_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AUK81815.1|1057214_1058267_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AUK81816.1|1058319_1058709_+	two-component system response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AUK81817.1|1058717_1059350_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AUK81818.1|1059449_1060466_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK84353.1|1061296_1062304_+	aldo/keto reductase	NA	NA	NA	NA	NA
AUK81819.1|1062300_1063944_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AUK81820.1|1063940_1064828_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AUK81821.1|1064968_1065442_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
AUK81822.1|1065431_1066454_-	phosphate starvation-inducible protein PhoH	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AUK81823.1|1066450_1067878_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AUK81824.1|1068815_1069832_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP017925	Bordetella pertussis strain J203, complete genome	4104273	1157578	1219701	4104273	tRNA,transposase	Erysipelothrix_phage(33.33%)	52	NA	NA
AUK81884.1|1157578_1158481_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81885.1|1158627_1159251_-	fimbrial protein	NA	NA	NA	NA	NA
AUK81886.1|1159424_1161707_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AUK81887.1|1161861_1164558_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AUK81888.1|1164683_1165172_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81889.1|1165207_1167070_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
AUK81890.1|1167048_1167258_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81891.1|1167582_1170453_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AUK81892.1|1170498_1171713_+	dihydrolipoamide succinyltransferase	NA	NA	NA	NA	NA
AUK81893.1|1171942_1173370_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AUK81894.1|1173467_1174559_+	cell division protein ZapE	NA	NA	NA	NA	NA
AUK81895.1|1174571_1175330_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK81896.1|1175417_1176320_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81897.1|1176316_1177267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81898.1|1177396_1178380_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK81899.1|1178434_1179157_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK81900.1|1180635_1181991_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AUK81901.1|1182071_1184447_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
AUK81902.1|1184611_1186687_+	helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AUK84361.1|1186748_1187543_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AUK81903.1|1187650_1188613_+	RNA pseudouridine synthase	NA	NA	NA	NA	NA
AUK81904.1|1188600_1189356_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81905.1|1189463_1191101_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AUK81906.1|1191168_1191906_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK81907.1|1192008_1192584_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AUK81908.1|1192756_1193293_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84362.1|1193325_1193640_+	periplasmic lipoprotein involved in iron transport	NA	NA	NA	NA	NA
AUK81909.1|1193655_1194501_+	FTR1 family iron permease	NA	NA	NA	NA	NA
AUK81910.1|1194539_1195919_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81911.1|1195996_1196878_+	phenazine biosynthesis protein PhzC/PhzF	NA	NA	NA	NA	NA
AUK81912.1|1197024_1197927_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81913.1|1197923_1198334_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUK81914.1|1198441_1199296_-	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AUK81915.1|1199288_1200251_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81916.1|1200296_1201421_-	racemase	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AUK81917.1|1201526_1202405_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81918.1|1202529_1203309_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK81919.1|1203462_1204884_+	MFS transporter	NA	NA	NA	NA	NA
AUK81920.1|1205318_1207016_+	sodium:proline symporter	NA	NA	NA	NA	NA
AUK81921.1|1207044_1207167_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84363.1|1207242_1208184_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
AUK81922.1|1208510_1209257_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81923.1|1209264_1210191_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81924.1|1210312_1211230_+	oxidoreductase	NA	NA	NA	NA	NA
AUK81925.1|1211269_1212223_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK81926.1|1212247_1212826_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81927.1|1214499_1215108_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81928.1|1215185_1215539_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84364.1|1215622_1216555_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AUK81929.1|1216862_1217765_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81930.1|1217851_1218802_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81931.1|1218798_1219701_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP017925	Bordetella pertussis strain J203, complete genome	4104273	1292712	1329477	4104273	transposase	Salmonella_phage(50.0%)	36	NA	NA
AUK81983.1|1292712_1293663_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81984.1|1293642_1294224_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81985.1|1294284_1296012_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AUK81986.1|1296123_1297482_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AUK81987.1|1297774_1298725_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK81988.1|1298765_1299836_+	hypothetical protein	NA	NA	NA	NA	NA
AUK81989.1|1299858_1300737_-	hypothetical protein	NA	NA	NA	NA	NA
AUK81990.1|1300908_1301880_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK81991.1|1302042_1302885_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81992.1|1303046_1303727_+	anti-sigma factor	NA	NA	NA	NA	NA
AUK81993.1|1303720_1304890_+	amine oxidase	NA	NA	NA	NA	NA
AUK81994.1|1304886_1305918_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AUK81995.1|1305985_1307203_+	MFS transporter	NA	NA	NA	NA	NA
AUK81996.1|1307237_1308770_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK81997.1|1308850_1309474_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK81998.1|1309504_1310116_+	RhtB family transporter	NA	NA	NA	NA	NA
AUK81999.1|1310151_1310622_+	histidine kinase	NA	NA	NA	NA	NA
AUK82000.1|1310796_1311045_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82001.1|1311052_1312057_+	peptidase M20	NA	NA	NA	NA	NA
AUK82002.1|1312093_1313608_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK82003.1|1313611_1314571_+	ABC transporter	NA	NA	NA	NA	NA
AUK82004.1|1314599_1315403_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK82005.1|1315404_1317039_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AUK82006.1|1317122_1318184_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK82007.1|1318655_1319180_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AUK82008.1|1319643_1320546_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82009.1|1320542_1321577_-	hydrolase	NA	NA	NA	NA	NA
AUK82010.1|1321685_1322324_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82011.1|1322618_1322846_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK82012.1|1322968_1323682_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK82013.1|1323926_1324877_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82014.1|1325016_1325262_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82015.1|1325376_1326825_-	2-aminoadipate aminotransferase	NA	NA	NA	NA	NA
AUK82016.1|1326935_1327886_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82017.1|1327882_1328332_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AUK82018.1|1328574_1329477_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP017925	Bordetella pertussis strain J203, complete genome	4104273	1418119	1470272	4104273	tRNA,transposase	Salmonella_phage(25.0%)	46	NA	NA
AUK82098.1|1418119_1419070_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82099.1|1419236_1419590_+	cytochrome C	NA	NA	NA	NA	NA
AUK82100.1|1419602_1419965_+	cytochrome	NA	NA	NA	NA	NA
AUK82101.1|1420006_1420432_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82102.1|1420634_1421891_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AUK82103.1|1422089_1423070_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82104.1|1423219_1424461_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82105.1|1424559_1425510_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82106.1|1425518_1426214_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AUK82107.1|1426255_1428970_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK82108.1|1429035_1429635_-	potassium-transporting ATPase subunit C	NA	NA	NA	NA	NA
AUK82109.1|1429645_1431811_-	potassium-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AUK82110.1|1431834_1433619_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
AUK82111.1|1433618_1433708_-	potassium-transporting ATPase subunit F	NA	NA	NA	NA	NA
AUK82112.1|1434402_1434675_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82113.1|1434674_1436741_+	cation acetate symporter	NA	NA	NA	NA	NA
AUK82114.1|1436737_1437640_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82115.1|1437786_1438689_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82116.1|1438852_1439185_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AUK82117.1|1439181_1439868_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AUK82118.1|1439854_1440814_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AUK82119.1|1440846_1443216_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AUK82120.1|1443215_1443848_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AUK82121.1|1443949_1445290_+	recombination factor protein RarA	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AUK82122.1|1445336_1446692_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AUK82123.1|1446982_1447219_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82124.1|1447406_1447724_-	virulence factor	NA	NA	NA	NA	NA
AUK82125.1|1447996_1448512_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AUK82126.1|1448605_1448767_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82127.1|1448782_1449538_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AUK82128.1|1449876_1450083_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82129.1|1450090_1450750_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AUK82130.1|1451044_1453249_-	porin	NA	NA	NA	NA	NA
AUK82131.1|1453359_1454583_-	multidrug transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AUK82132.1|1454705_1455680_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK82133.1|1455747_1456941_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK82134.1|1456955_1457756_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AUK82135.1|1457752_1459609_-	IucA/IucC family protein	NA	NA	NA	NA	NA
AUK82136.1|1459605_1460211_-	siderophore biosynthesis protein	NA	NA	NA	NA	NA
AUK82137.1|1460229_1461615_-	alcaligin biosynthesis protein	NA	NA	NA	NA	NA
AUK82138.1|1462340_1463567_+	transporter	NA	NA	NA	NA	NA
AUK82139.1|1463655_1464438_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK82140.1|1464584_1465487_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82141.1|1465513_1466287_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AUK82142.1|1466298_1467540_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82143.1|1469369_1470272_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP017925	Bordetella pertussis strain J203, complete genome	4104273	1572108	1643214	4104273	transposase	Ectocarpus_siliculosus_virus(11.11%)	55	NA	NA
AUK82236.1|1572108_1573059_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82237.1|1573080_1574301_+	YggW family oxidoreductase	NA	NA	NA	NA	NA
AUK82238.1|1574486_1575899_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AUK82239.1|1575962_1577030_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AUK82240.1|1577029_1578517_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AUK84382.1|1578526_1579471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK82241.1|1579630_1580329_+	quercetin 2,3-dioxygenase	NA	NA	NA	NA	NA
AUK82242.1|1580406_1581312_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82243.1|1581331_1582234_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82244.1|1582380_1583175_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AUK82245.1|1583179_1584850_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AUK82246.1|1584973_1586023_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK82247.1|1586344_1587121_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AUK82248.1|1587185_1588088_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK82249.1|1589381_1590185_+	2,5-didehydrogluconate reductase B	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AUK82250.1|1592878_1593265_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AUK82251.1|1593280_1595371_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
AUK82252.1|1595422_1596376_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AUK84383.1|1596390_1597278_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK82253.1|1597415_1598942_+	methylmalonate-semialdehyde dehydrogenase (acylating)	NA	NA	NA	NA	NA
AUK84384.1|1599040_1599541_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AUK82254.1|1599864_1601820_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK82255.1|1601987_1604072_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84385.1|1604098_1604524_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82256.1|1605739_1606510_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AUK82257.1|1606509_1607250_+	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK82258.1|1607291_1608461_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AUK82259.1|1608492_1610577_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AUK82260.1|1610573_1611464_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK82261.1|1611460_1612558_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUK82262.1|1612580_1613870_+	Vi polysaccharide biosynthesis protein VipA/TviB	NA	NA	NA	NA	NA
AUK82263.1|1613881_1614907_+	LPS biosynthesis protein WbpP	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AUK82264.1|1614903_1616961_+	beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase	NA	NA	NA	NA	NA
AUK82265.1|1616974_1618150_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUK82266.1|1618231_1619182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82267.1|1619240_1620014_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK82268.1|1620006_1621563_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK82269.1|1621559_1622510_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82270.1|1623836_1624439_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK82271.1|1624678_1625380_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK82272.1|1625373_1626156_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AUK82273.1|1626340_1627291_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82274.1|1627389_1628127_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AUK82275.1|1628316_1629075_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK82276.1|1629121_1630123_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK82277.1|1630288_1631257_-	phenol degradation protein meta	NA	NA	NA	NA	NA
AUK82278.1|1632796_1633765_+	AAA family ATPase	NA	NA	NA	NA	NA
AUK82279.1|1633773_1634715_+	MoxR protein	NA	NA	NA	NA	NA
AUK84386.1|1635188_1636199_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84388.1|1636189_1637704_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82280.1|1637700_1639047_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84387.1|1639049_1640084_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AUK82281.1|1640133_1641759_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AUK82282.1|1641852_1642332_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82283.1|1642311_1643214_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP017925	Bordetella pertussis strain J203, complete genome	4104273	1831588	1903098	4104273	tRNA,transposase	Klosneuvirus(22.22%)	60	NA	NA
AUK82428.1|1831588_1832539_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82429.1|1832663_1833473_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK82430.1|1833721_1834624_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82431.1|1835897_1837115_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82432.1|1837111_1838167_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
AUK82433.1|1838171_1839074_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK82434.1|1839150_1840023_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AUK82435.1|1840153_1840522_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AUK82436.1|1840579_1841626_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AUK82437.1|1841821_1843078_+	amino acid dehydrogenase	NA	NA	NA	NA	NA
AUK82438.1|1843082_1844420_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK82439.1|1844569_1845526_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK82440.1|1846983_1847349_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82441.1|1847396_1848971_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK82442.1|1849023_1849968_+	peptide ABC transporter	NA	NA	NA	NA	NA
AUK84401.1|1849895_1850816_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK82443.1|1850808_1852443_+	microcin ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AUK82444.1|1852439_1853795_+	amidase	NA	NA	NA	NA	NA
AUK82445.1|1854701_1856279_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82446.1|1856282_1857557_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84402.1|1857654_1858029_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82447.1|1859744_1860878_+	general secretion pathway protein	NA	NA	NA	NA	NA
AUK82448.1|1860915_1861521_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AUK82449.1|1861517_1862336_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82450.1|1862407_1865032_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AUK82451.1|1865018_1865273_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82452.1|1865339_1865921_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82453.1|1866224_1866485_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AUK82454.1|1866650_1867274_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AUK82455.1|1867273_1868047_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AUK82456.1|1868043_1869252_-	class V aminotransferase	NA	NA	NA	NA	NA
AUK82457.1|1869277_1869751_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82458.1|1869824_1870775_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82459.1|1870873_1871776_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82460.1|1871922_1873272_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK82461.1|1874037_1874793_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82462.1|1874885_1877768_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AUK82463.1|1878090_1878516_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AUK82464.1|1878543_1879692_+	23S rRNA (adenine(2503)-C(2))-methyltransferase	NA	NA	NA	NA	NA
AUK82465.1|1879688_1880195_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK82466.1|1880210_1881497_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	NA	NA	NA	NA	NA
AUK82467.1|1881546_1882842_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK82468.1|1882843_1883482_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84403.1|1883487_1884645_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AUK82469.1|1884671_1886027_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AUK82470.1|1886030_1887101_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AUK82471.1|1887239_1887476_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
AUK82472.1|1887563_1888670_+	GTPase HflX	NA	NA	NA	NA	NA
AUK82473.1|1888635_1889940_+	HflK protein	NA	NA	NA	NA	NA
AUK82474.1|1889958_1890858_+	HflC protein	NA	NA	NA	NA	NA
AUK82475.1|1891041_1892199_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AUK82476.1|1892275_1893571_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AUK82477.1|1893684_1894224_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
AUK82478.1|1894501_1894714_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AUK82479.1|1894733_1896764_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AUK82480.1|1897449_1899732_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
AUK82481.1|1900141_1900441_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82482.1|1900725_1901139_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AUK82483.1|1901098_1902049_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82484.1|1902147_1903098_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP017925	Bordetella pertussis strain J203, complete genome	4104273	1914350	1962761	4104273	transposase	Klosneuvirus(16.67%)	47	NA	NA
AUK82495.1|1914350_1915253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82496.1|1915249_1916524_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AUK82497.1|1916627_1917821_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AUK82498.1|1917817_1918471_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK82499.1|1918467_1919904_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AUK82500.1|1919891_1920251_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AUK82501.1|1920336_1920987_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82502.1|1921271_1922174_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82503.1|1922272_1923136_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82504.1|1923219_1925085_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK84407.1|1925342_1926863_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUK82505.1|1926950_1927601_-	NAD(P)H dehydrogenase	NA	NA	NA	NA	NA
AUK82506.1|1928549_1929845_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82507.1|1929866_1930751_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK82508.1|1930849_1931725_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AUK82509.1|1931714_1932071_-	RNA signal recognition particle	NA	NA	NA	NA	NA
AUK82510.1|1932201_1933176_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK82511.1|1933305_1933485_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AUK82512.1|1933627_1934107_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82513.1|1934117_1934954_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK82514.1|1935066_1935438_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK82515.1|1935434_1935986_+	ATPase	NA	NA	NA	NA	NA
AUK82516.1|1936001_1937693_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AUK82517.1|1937741_1938422_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK82518.1|1938669_1939134_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82519.1|1939303_1940233_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84408.1|1940245_1940839_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82520.1|1940966_1942784_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AUK82521.1|1942867_1943818_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82522.1|1943916_1944453_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK82523.1|1944518_1945421_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82524.1|1945439_1945787_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AUK82525.1|1945815_1947255_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AUK82526.1|1947273_1947669_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82527.1|1947843_1948452_+	peptidase S16	NA	NA	NA	NA	NA
AUK82528.1|1948464_1949283_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AUK82529.1|1949234_1950209_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK82530.1|1950237_1951299_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82531.1|1951295_1953512_-	aldehyde oxidase	NA	NA	NA	NA	NA
AUK82532.1|1953525_1953984_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AUK82533.1|1954141_1954486_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82534.1|1954642_1955548_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84409.1|1955634_1956648_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK82535.1|1958627_1959644_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK82536.1|1959786_1961139_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AUK82537.1|1961313_1961610_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82538.1|1961756_1962761_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP017925	Bordetella pertussis strain J203, complete genome	4104273	1975194	2039515	4104273	transposase	Vibrio_phage(20.0%)	54	NA	NA
AUK82552.1|1975194_1976145_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82553.1|1976366_1977317_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82554.1|1977415_1978381_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK82555.1|1978518_1979418_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK82556.1|1979945_1981772_+	DUF3604 domain-containing protein	NA	NA	NA	NA	NA
AUK82557.1|1982129_1983500_+	hypothetical protein	NA	NA	NA	NA	NA
AUK82558.1|1983510_1984707_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK82559.1|1984779_1986099_+	acyl--CoA ligase	NA	NA	NA	NA	NA
AUK82560.1|1986095_1986971_+	esterase	NA	NA	NA	NA	NA
AUK82561.1|1987001_1988150_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK82562.1|1988167_1988482_-	2Fe-2S ferredoxin	NA	NA	NA	NA	NA
AUK82563.1|1988503_1989226_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK82564.1|1989225_1990044_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK82565.1|1990048_1990576_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AUK82566.1|1990581_1991838_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AUK82567.1|1992196_1993336_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK82568.1|1993413_1994286_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK82569.1|1995204_1996107_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82570.1|1996066_1996702_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82571.1|1997061_1998384_-	isocitrate lyase	NA	NA	NA	NA	NA
AUK82572.1|1998702_1999524_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
AUK82573.1|1999459_1999801_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82574.1|1999810_2000779_-	MFS transporter	NA	NA	NA	NA	NA
AUK82575.1|2000948_2001521_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AUK82576.1|2001560_2003390_-	excinuclease ABC subunit C	NA	NA	NA	NA	NA
AUK82577.1|2003352_2004411_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
AUK82578.1|2004448_2004910_-	holo-ACP synthase	NA	NA	NA	NA	NA
AUK82579.1|2004994_2005741_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AUK82580.1|2007231_2010462_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AUK82581.1|2010528_2011860_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK82582.1|2012112_2012487_-	DNA-binding protein	NA	NA	NA	NA	NA
AUK82583.1|2012589_2013768_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82584.1|2013778_2014369_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84411.1|2014479_2015286_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AUK82585.1|2015311_2016106_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AUK82586.1|2017106_2018081_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK84412.1|2018239_2018752_-	superoxide dismutase	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AUK82587.1|2018908_2019880_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK82588.1|2021624_2022431_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK82589.1|2022427_2023729_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AUK82590.1|2023679_2024444_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK82591.1|2024557_2025328_-	spermidine synthase	NA	NA	NA	NA	NA
AUK82592.1|2025412_2026600_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK82593.1|2026672_2027047_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AUK82594.1|2027147_2028410_-	glycine/betaine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AUK82595.1|2028406_2029264_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK82596.1|2029436_2030438_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK82597.1|2030889_2031792_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84413.1|2033403_2034555_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AUK82598.1|2034923_2035160_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AUK82599.1|2035223_2035391_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AUK82600.1|2035504_2037310_-	sulfate transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
AUK82601.1|2037563_2038466_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82602.1|2038612_2039515_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP017925	Bordetella pertussis strain J203, complete genome	4104273	2171091	2228369	4104273	tRNA,transposase	Klosneuvirus(15.38%)	49	NA	NA
AUK82702.1|2171091_2172042_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84421.1|2172140_2173538_-	rRNA methyltransferase	NA	NA	NA	NA	NA
AUK82703.1|2174194_2175160_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA	NA
AUK82704.1|2175149_2178011_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AUK82705.1|2178013_2178520_+	signal peptidase II	NA	NA	NA	NA	NA
AUK82706.1|2178624_2179833_+	phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AUK82707.1|2179834_2180773_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82708.1|2180934_2181408_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK82709.1|2181404_2182355_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82710.1|2182465_2182906_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82711.1|2183034_2184264_-	lytic transglycosylase	NA	NA	NA	NA	NA
AUK82712.1|2184302_2185124_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82713.1|2185177_2186329_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK82714.1|2186420_2186891_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82715.1|2189459_2192009_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AUK82716.1|2192079_2194653_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AUK82717.1|2194918_2195119_+	general stress protein CsbD	NA	NA	NA	NA	NA
AUK82718.1|2195150_2195312_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AUK82719.1|2195369_2195708_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AUK82720.1|2195856_2196759_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82721.1|2197580_2198249_+	arylesterase	NA	NA	NA	NA	NA
AUK84422.1|2198230_2200186_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AUK82722.1|2200428_2201178_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AUK82723.1|2201190_2202054_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AUK82724.1|2202057_2203473_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AUK82725.1|2203606_2204335_-	glutathione peroxidase	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AUK82726.1|2204473_2204674_-	heavy metal transporter	NA	NA	NA	NA	NA
AUK82727.1|2204849_2205248_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUK82728.1|2205271_2206672_-	23S rRNA (uracil(1939)-C(5))-methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AUK82729.1|2206790_2207543_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82730.1|2207831_2208431_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82731.1|2208535_2209315_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AUK82732.1|2209311_2210196_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AUK82733.1|2210213_2210993_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
AUK82734.1|2210977_2211736_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AUK84423.1|2211873_2212509_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK82735.1|2212776_2213793_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK82736.1|2213890_2214931_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AUK82737.1|2215065_2216358_+	guanine permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AUK82738.1|2217717_2218101_+	thiol reductase thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AUK82739.1|2218118_2218706_-	thymidylate synthase	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AUK82740.1|2218743_2219694_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82741.1|2219792_2220353_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AUK82742.1|2220349_2220895_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK82743.1|2221090_2222119_+	silent information regulator protein Sir2	NA	NA	NA	NA	NA
AUK82744.1|2222159_2223500_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AUK82745.1|2223608_2224613_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK82746.1|2224719_2227320_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK82747.1|2227466_2228369_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP017925	Bordetella pertussis strain J203, complete genome	4104273	2476001	2534245	4104273	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
AUK82947.1|2476001_2476904_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82948.1|2477431_2478088_-	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
AUK82949.1|2478102_2479770_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK82950.1|2479772_2480402_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK82951.1|2480613_2481708_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK82952.1|2481852_2482665_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AUK82953.1|2482668_2484252_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AUK82954.1|2484422_2485553_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUK82955.1|2485739_2486816_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AUK84446.1|2486897_2487548_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUK82956.1|2487562_2488966_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AUK82957.1|2489249_2490068_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK82958.1|2490064_2490769_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AUK82959.1|2491668_2492784_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK82960.1|2492817_2493192_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82961.1|2493214_2494372_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AUK82962.1|2494384_2494618_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82963.1|2495252_2498222_-	formate dehydrogenase	NA	NA	NA	NA	NA
AUK82964.1|2498236_2498446_-	formate dehydrogenase	NA	NA	NA	NA	NA
AUK82965.1|2498597_2499227_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84447.1|2499223_2501281_-	4Fe-4S ferredoxin	NA	NA	NA	NA	NA
AUK82966.1|2501337_2502018_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82967.1|2502014_2502575_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82968.1|2502581_2503679_-	MRP family ATP-binding protein	NA	NA	NA	NA	NA
AUK82969.1|2503831_2504425_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AUK82970.1|2504421_2505714_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AUK82971.1|2505727_2506270_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AUK82972.1|2506279_2507116_-	peptidase M48	NA	NA	NA	NA	NA
AUK82973.1|2507149_2508211_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AUK82974.1|2508252_2509305_-	diguanylate cyclase	NA	NA	NA	NA	NA
AUK82975.1|2509320_2509623_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82976.1|2509764_2510715_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82977.1|2510893_2512588_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK82978.1|2512584_2513670_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AUK82979.1|2513717_2514617_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK82980.1|2514627_2515272_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AUK82981.1|2516293_2519536_-	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
AUK82982.1|2519546_2520701_-	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
AUK82983.1|2520927_2521890_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
AUK82984.1|2522036_2522939_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82985.1|2523085_2523988_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82986.1|2523997_2524687_-	hypothetical protein	NA	NA	NA	NA	NA
AUK82987.1|2524746_2525184_-	thioesterase	NA	NA	NA	NA	NA
AUK82988.1|2525229_2526123_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK82989.1|2526170_2527343_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK82990.1|2527339_2528494_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK82991.1|2528690_2529041_-	RnfH family protein	NA	NA	NA	NA	NA
AUK82992.1|2529030_2529465_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AUK82993.1|2529481_2530384_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK82994.1|2530579_2531047_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AUK82995.1|2531027_2532185_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AUK82996.1|2532250_2533177_-	paraslipin	NA	NA	NA	NA	NA
AUK82997.1|2533342_2534245_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP017925	Bordetella pertussis strain J203, complete genome	4104273	2576570	2643022	4104273	transposase	uncultured_Caudovirales_phage(40.0%)	58	NA	NA
AUK83035.1|2576570_2577473_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83036.1|2577488_2577701_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83037.1|2577842_2578415_+	flagellar basal body protein FliL	NA	NA	NA	NA	NA
AUK83038.1|2578417_2579428_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AUK83039.1|2579420_2579921_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AUK83040.1|2579931_2580273_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AUK84451.1|2580341_2581076_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AUK83041.1|2581092_2581362_+	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AUK83042.1|2581384_2582173_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AUK83043.1|2582219_2583236_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK83044.1|2583452_2584895_-	chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AUK83045.1|2585073_2586693_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AUK83046.1|2586813_2588634_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AUK83047.1|2588712_2590245_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AUK83048.1|2590278_2591925_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AUK83049.1|2591994_2593017_-	flagellar rod assembly protein/muramidase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AUK83050.1|2593034_2594168_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AUK83051.1|2594170_2594860_-	flagellar basal body L-ring protein	NA	NA	NA	NA	NA
AUK83052.1|2594859_2595645_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AUK83053.1|2595688_2596453_-	flagellar biosynthesis protein FlgF	NA	NA	NA	NA	NA
AUK83054.1|2596491_2597913_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AUK83055.1|2597978_2598683_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AUK83056.1|2598730_2599150_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AUK83057.1|2599162_2599570_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AUK84452.1|2599753_2600464_+	flagella basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AUK83058.1|2600590_2600881_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AUK83059.1|2600898_2601381_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AUK83060.1|2605886_2607041_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AUK83061.1|2607346_2608363_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK83062.1|2608609_2609398_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK83063.1|2609464_2610145_+	cysteine ABC transporter permease	NA	NA	NA	NA	NA
AUK83064.1|2610141_2610912_+	ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AUK83065.1|2611010_2611961_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83066.1|2612016_2612934_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AUK83067.1|2612944_2614123_-	mandelate racemase	NA	NA	NA	NA	NA
AUK83068.1|2614142_2615138_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83069.1|2616726_2617335_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUK83070.1|2617322_2618363_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK83071.1|2618380_2619343_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83072.1|2619339_2620533_-	CoA transferase	NA	NA	NA	NA	NA
AUK83073.1|2620529_2621327_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AUK83074.1|2621352_2622339_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83075.1|2622357_2624397_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUK84453.1|2624598_2625279_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK83076.1|2625292_2626204_-	CoA ester lyase	NA	NA	NA	NA	NA
AUK83077.1|2626200_2626779_-	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
AUK83078.1|2626917_2627823_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK83079.1|2627830_2631250_+	nuclease	NA	NA	NA	NA	NA
AUK83080.1|2631237_2633838_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK83081.1|2634793_2635426_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AUK83082.1|2635819_2636578_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83083.1|2636574_2637777_+	cardiolipin synthase B	NA	NA	NA	NA	NA
AUK83084.1|2637773_2637974_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83085.1|2637964_2638915_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83086.1|2639822_2640968_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83087.1|2640954_2641710_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK83088.1|2641826_2642006_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83089.1|2642071_2643022_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP017925	Bordetella pertussis strain J203, complete genome	4104273	2806626	2861143	4104273	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	49	NA	NA
AUK83222.1|2806626_2807529_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83223.1|2807905_2808511_+	fimbrial protein	NA	NA	NA	NA	NA
AUK83224.1|2808564_2809878_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AUK83225.1|2809952_2810423_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AUK83226.1|2810422_2811211_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AUK83227.1|2811221_2812874_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AUK83228.1|2812961_2813864_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84468.1|2815073_2815580_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AUK83229.1|2815576_2816341_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AUK83230.1|2816356_2816641_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AUK83231.1|2816705_2817695_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AUK83232.1|2817866_2818796_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AUK83233.1|2818767_2819454_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AUK83234.1|2819487_2820033_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AUK83235.1|2820077_2821343_+	peptidase M48	NA	NA	NA	NA	NA
AUK83236.1|2821339_2822242_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
AUK83237.1|2823423_2824368_-	peptide ABC transporter	NA	NA	NA	NA	NA
AUK83238.1|2824462_2825980_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK83239.1|2826021_2827650_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK83240.1|2827757_2828639_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK83241.1|2828899_2829127_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83242.1|2831751_2832126_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AUK83243.1|2832150_2832489_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK83244.1|2832532_2834167_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AUK83245.1|2834205_2835552_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AUK84469.1|2835659_2837081_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AUK83246.1|2837150_2837735_-	nitroreductase	NA	NA	NA	NA	NA
AUK83247.1|2837837_2838788_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83248.1|2838922_2840029_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK83249.1|2840039_2841137_+	cyclic pyranopterin phosphate synthase	NA	NA	NA	NA	NA
AUK83250.1|2841281_2842487_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AUK83251.1|2842493_2843015_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AUK84470.1|2843011_2843494_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AUK83252.1|2843499_2843751_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
AUK83253.1|2843731_2844217_-	molybdenum cofactor biosynthesis protein C	NA	NA	NA	NA	NA
AUK83254.1|2844352_2847814_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83255.1|2847831_2848716_+	carboxymethylenebutenolidase	NA	NA	NA	NA	NA
AUK83256.1|2848725_2849157_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84471.1|2849403_2849907_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AUK83257.1|2849984_2851385_+	MFS transporter	NA	NA	NA	NA	NA
AUK83258.1|2851459_2852335_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84472.1|2852331_2853339_-	biotin synthase BioB	NA	NA	NA	NA	NA
AUK83259.1|2853806_2854112_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83260.1|2854202_2854793_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK83261.1|2854983_2856000_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK83262.1|2856191_2858528_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AUK83263.1|2858610_2859045_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUK83264.1|2859191_2860094_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83265.1|2860192_2861143_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP017925	Bordetella pertussis strain J203, complete genome	4104273	2869168	2925953	4104273	transposase,protease	uncultured_Mediterranean_phage(28.57%)	42	NA	NA
AUK83272.1|2869168_2870071_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83273.1|2871825_2872092_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83274.1|2872799_2873138_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK83275.1|2874466_2876746_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK83276.1|2876723_2877428_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83277.1|2877690_2878293_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK83278.1|2878389_2879679_+	MFS transporter	NA	NA	NA	NA	NA
AUK83279.1|2879736_2880468_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AUK83280.1|2880464_2881268_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AUK83281.1|2881264_2882353_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK83282.1|2882349_2883279_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK83283.1|2883427_2884573_-	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK83284.1|2884594_2885497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83285.1|2885875_2889697_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUK83286.1|2889853_2890522_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83287.1|2890526_2892200_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
AUK83288.1|2892218_2893538_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AUK83289.1|2893542_2895858_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
AUK84474.1|2895913_2898082_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AUK84475.1|2898078_2902644_-	alpha-2-macroglobulin	NA	NA	NA	NA	NA
AUK83290.1|2903357_2903672_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AUK83291.1|2903899_2904145_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AUK83292.1|2904266_2904758_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	4.8e-14
AUK83293.1|2904857_2906063_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AUK83294.1|2906178_2907576_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AUK83295.1|2907692_2908271_-	superoxide dismutase	NA	NA	NA	NA	NA
AUK83296.1|2908343_2909735_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AUK83297.1|2909902_2910853_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83298.1|2911133_2911754_+	flagellar motor protein MotA	NA	NA	NA	NA	NA
AUK83299.1|2911750_2912164_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AUK83300.1|2912160_2913204_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AUK83301.1|2913259_2913448_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83302.1|2913457_2914222_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AUK83303.1|2914312_2914969_+	adenylate kinase	NA	NA	NA	NA	NA
AUK83304.1|2915060_2915819_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK83305.1|2915844_2917446_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AUK83306.1|2917646_2918651_+	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AUK83307.1|2918751_2919015_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AUK83308.1|2919132_2919909_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AUK83309.1|2920499_2921450_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83310.1|2923833_2924946_-	malate dehydrogenase	NA	NA	NA	NA	NA
AUK83311.1|2925002_2925953_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP017925	Bordetella pertussis strain J203, complete genome	4104273	2948332	2999982	4104273	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
AUK83334.1|2948332_2949196_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83335.1|2949391_2950864_-	magnesium transporter	NA	NA	NA	NA	NA
AUK83336.1|2950874_2951285_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK83337.1|2951348_2952395_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83338.1|2952501_2953380_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK83339.1|2953393_2954590_-	amidohydrolase	NA	NA	NA	NA	NA
AUK83340.1|2954651_2956343_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AUK83341.1|2956339_2957242_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83342.1|2957410_2958307_-	inositol monophosphatase	NA	NA	NA	NA	NA
AUK83343.1|2960584_2962810_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AUK83344.1|2962974_2964063_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AUK83345.1|2964019_2964673_+	DL-methionine transporter permease subunit	NA	NA	NA	NA	NA
AUK83346.1|2964720_2965518_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK83347.1|2966097_2967000_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83348.1|2967080_2968229_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK83349.1|2968285_2969236_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83350.1|2969334_2969640_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AUK83351.1|2969668_2970103_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83352.1|2970104_2971349_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83353.1|2971345_2972056_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84477.1|2972070_2972982_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83354.1|2973344_2973749_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83355.1|2973745_2974204_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83356.1|2974210_2975119_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84478.1|2975115_2975982_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK83357.1|2975968_2976796_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AUK83358.1|2976806_2977934_+	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AUK83359.1|2980291_2981554_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK83360.1|2981560_2982313_+	DNA-binding protein	NA	NA	NA	NA	NA
AUK83361.1|2982364_2982550_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83362.1|2982825_2983290_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AUK83363.1|2983369_2983981_+	3-methyladenine DNA glycosylase	NA	NA	NA	NA	NA
AUK83364.1|2984125_2986234_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83365.1|2986230_2987133_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83366.1|2987284_2987905_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84479.1|2988008_2988749_+	oxidoreductase	NA	NA	NA	NA	NA
AUK83367.1|2989883_2991008_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83368.1|2991053_2991422_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83369.1|2991663_2992566_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83370.1|2993649_2994192_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83371.1|2994625_2995528_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83372.1|2995524_2996433_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK83373.1|2996559_2997396_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AUK83374.1|2997908_2999018_+	porin	NA	NA	NA	NA	NA
AUK83375.1|2999079_2999982_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP017925	Bordetella pertussis strain J203, complete genome	4104273	3398787	3443859	4104273	tRNA,transposase	Staphylococcus_phage(20.0%)	39	NA	NA
AUK83691.1|3398787_3399690_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83692.1|3400504_3401599_-	CoA transferase	NA	NA	NA	NA	NA
AUK83693.1|3401591_3402926_-	CoA ligase	NA	NA	NA	NA	NA
AUK83694.1|3402879_3403563_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK83695.1|3403588_3404752_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK83696.1|3404748_3405750_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK83697.1|3405749_3406622_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK83698.1|3406618_3407368_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AUK83699.1|3407364_3408156_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AUK83700.1|3408152_3409292_-	ABC transporter	NA	NA	NA	NA	NA
AUK83701.1|3409567_3410353_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK83702.1|3410386_3411169_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK83703.1|3411172_3411562_+	DNA-binding protein	NA	NA	NA	NA	NA
AUK83704.1|3412701_3413565_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK83705.1|3413600_3414689_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83706.1|3414685_3415588_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83707.1|3415989_3418968_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83708.1|3419894_3420773_+	fatty acid desaturase	NA	NA	NA	NA	NA
AUK83709.1|3420808_3421141_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83710.1|3421119_3422640_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83711.1|3422721_3423672_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83712.1|3423668_3424136_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AUK83713.1|3424178_3424949_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK83714.1|3424969_3425770_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AUK83715.1|3425780_3427190_+	lytic transglycosylase	NA	NA	NA	NA	NA
AUK83716.1|3427284_3428070_+	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK83717.1|3428309_3429326_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK83718.1|3429433_3429826_-	osmotically inducible protein OsmC	NA	NA	NA	NA	NA
AUK83719.1|3429963_3430644_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83720.1|3430648_3431620_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK83721.1|3431715_3432618_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83722.1|3434170_3434872_+	two-component system response regulator OmpR	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AUK83723.1|3434871_3436296_+	ATPase	NA	NA	NA	NA	NA
AUK83724.1|3437365_3438706_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUK83725.1|3438821_3440585_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AUK83726.1|3440696_3441575_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AUK83727.1|3441687_3442503_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AUK83728.1|3442506_3442758_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AUK83729.1|3442842_3443859_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP017925	Bordetella pertussis strain J203, complete genome	4104273	3461603	3514008	4104273	tRNA,transposase	Acinetobacter_phage(37.5%)	50	NA	NA
AUK83739.1|3461603_3462620_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK83740.1|3462715_3463426_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK84501.1|3463422_3464412_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK83741.1|3464507_3466139_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AUK83742.1|3466141_3466879_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK83743.1|3467034_3467907_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AUK83744.1|3468256_3469396_+	MFS transporter	NA	NA	NA	NA	NA
AUK83745.1|3469392_3470052_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AUK83746.1|3470123_3470756_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK83747.1|3470785_3471304_+	flavin reductase	NA	NA	NA	NA	NA
AUK83748.1|3471314_3472424_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUK83749.1|3472470_3473325_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AUK83750.1|3473326_3474229_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK83751.1|3475451_3476354_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83752.1|3476498_3477632_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83753.1|3477668_3477917_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83754.1|3478156_3479146_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83755.1|3479321_3480110_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AUK83756.1|3480106_3481138_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AUK83757.1|3481156_3481720_-	anthranilate/aminodeoxychorismate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AUK83758.1|3481775_3483296_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AUK83759.1|3483559_3484264_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AUK83760.1|3484271_3485000_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AUK83761.1|3485114_3485489_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AUK83762.1|3485531_3486821_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83763.1|3486817_3487987_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AUK83764.1|3488013_3488823_+	disulfide bond formation protein DsbC	NA	NA	NA	NA	NA
AUK83765.1|3488882_3489818_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AUK83766.1|3489830_3490781_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83767.1|3490879_3491842_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AUK83768.1|3491873_3492233_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AUK83769.1|3492357_3493260_+	oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AUK84502.1|3493261_3495028_-	peptidase M61	NA	NA	NA	NA	NA
AUK83770.1|3495068_3495845_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK83771.1|3497168_3498071_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83772.1|3498285_3498699_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84503.1|3498970_3499291_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK83773.1|3499363_3500245_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
AUK83774.1|3500361_3500604_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AUK83775.1|3500741_3501212_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
AUK83776.1|3501224_3501764_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
AUK83777.1|3501798_3503340_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
AUK83778.1|3503438_3504344_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
AUK83779.1|3504386_3505787_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
AUK83780.1|3505796_3506219_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
AUK84504.1|3506401_3507286_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83781.1|3507361_3508438_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AUK83782.1|3508744_3510847_+	primosomal protein N'	NA	NA	NA	NA	NA
AUK83783.1|3510889_3512959_+	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
AUK83784.1|3513057_3514008_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP017925	Bordetella pertussis strain J203, complete genome	4104273	3531174	3582205	4104273	tRNA,holin,transposase	Catovirus(10.0%)	48	NA	NA
AUK83796.1|3531174_3532077_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83797.1|3532417_3533368_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83798.1|3533514_3534417_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83799.1|3534713_3535211_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83800.1|3535253_3537029_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83801.1|3537036_3537903_+	copper resistance protein	NA	NA	NA	NA	NA
AUK84506.1|3537909_3538635_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK83802.1|3538804_3539035_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83803.1|3539099_3539294_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83804.1|3539813_3540584_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK83805.1|3540897_3541488_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AUK83806.1|3541521_3542850_-	amidase	NA	NA	NA	NA	NA
AUK83807.1|3542924_3544070_-	transporter	NA	NA	NA	NA	NA
AUK83808.1|3544181_3545180_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83809.1|3545142_3545577_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AUK83810.1|3547093_3547978_+	EamA family transporter	NA	NA	NA	NA	NA
AUK83811.1|3547974_3549180_-	cardiolipin synthase B	NA	NA	NA	NA	NA
AUK83812.1|3549176_3550037_-	endonuclease	NA	NA	NA	NA	NA
AUK83813.1|3550149_3551940_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AUK84507.1|3551980_3552625_-	hypothetical protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
AUK83814.1|3552646_3552955_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AUK84508.1|3553120_3554407_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83815.1|3554533_3555793_-|holin	choline dehydrogenase	holin	A0A2I2L3D3	Orpheovirus	27.6	6.1e-13
AUK83816.1|3555840_3556791_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83817.1|3558742_3559957_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AUK83818.1|3560062_3561052_+	D-arabinose 5-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AUK83819.1|3561048_3561657_+	phenylphosphate carboxylase subunit delta	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AUK83820.1|3561669_3562299_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AUK83821.1|3562295_3562916_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AUK83822.1|3562947_3563739_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AUK83823.1|3564092_3564314_+	ribosomal subunit interface protein	NA	NA	NA	NA	NA
AUK83824.1|3564590_3565046_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AUK83825.1|3565064_3565991_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AUK83826.1|3566044_3567331_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK83827.1|3568261_3569134_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AUK83828.1|3569130_3570081_+	hypothetical protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AUK83829.1|3570227_3571130_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83830.1|3571234_3571465_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83831.1|3571591_3571981_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83832.1|3571997_3574379_-	dehydrogenase	NA	NA	NA	NA	NA
AUK83833.1|3574371_3574881_-	4-hydroxybenzoyl-CoA reductase subunit gamma	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	8.8e-19
AUK83834.1|3575763_3576759_-	4,5-dihydroxyphthalate decarboxylase	NA	NA	NA	NA	NA
AUK83835.1|3576777_3577770_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK83836.1|3578010_3578571_-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
AUK83837.1|3578575_3578902_-	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
AUK83838.1|3578938_3579751_-	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
AUK83839.1|3579761_3580844_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
AUK83840.1|3580930_3582205_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
>prophage 27
CP017925	Bordetella pertussis strain J203, complete genome	4104273	3702251	3745422	4104273	integrase,tRNA,transposase	Streptococcus_phage(11.11%)	41	3740261:3740279	3746045:3746063
AUK83938.1|3702251_3703154_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83939.1|3703301_3704204_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83940.1|3704200_3704836_-	lysine transporter LysE	NA	NA	NA	NA	NA
AUK83941.1|3704965_3705865_+	transcriptional regulator ArgP	NA	NA	NA	NA	NA
AUK83942.1|3705960_3706452_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83943.1|3706498_3707464_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK83944.1|3708597_3709839_+	2-aminoadipate aminotransferase	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AUK83945.1|3709952_3710969_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AUK83946.1|3711003_3711480_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83947.1|3711622_3712531_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AUK83948.1|3712644_3713757_-	DNA protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AUK84516.1|3713857_3714343_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK83949.1|3714479_3715730_+	kynureninase	NA	NA	NA	NA	NA
AUK83950.1|3715831_3716344_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AUK83951.1|3716442_3717393_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83952.1|3717458_3718397_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AUK83953.1|3718419_3719046_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AUK83954.1|3719042_3719699_-	HAD family hydrolase	NA	NA	NA	NA	NA
AUK83955.1|3719695_3720298_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83956.1|3720304_3720892_-	Rossman fold protein, TIGR00730 family	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
AUK83957.1|3721072_3721642_+	bacterioferritin	NA	NA	NA	NA	NA
AUK83958.1|3721712_3723032_-	ribosomal protein S12 methylthiotransferase	NA	NA	NA	NA	NA
AUK83959.1|3723138_3723330_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AUK83960.1|3723581_3724871_+	glycine/D-amino acid oxidase	NA	NA	NA	NA	NA
AUK83961.1|3725025_3726021_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83962.1|3726105_3726780_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK83963.1|3726776_3727679_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83964.1|3727888_3729130_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AUK83965.1|3729126_3730071_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AUK83966.1|3730237_3731140_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83967.1|3731099_3732029_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83968.1|3732082_3732418_-	alkylhydroperoxidase	NA	NA	NA	NA	NA
AUK83969.1|3732462_3733227_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK83970.1|3733250_3733991_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK83971.1|3733998_3735552_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
AUK83972.1|3735586_3736564_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83973.1|3736836_3737418_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AUK83974.1|3737469_3744603_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
3740261:3740279	attL	GCGACCCGCAGCGTGCCGG	NA	NA	NA	NA
AUK83975.1|3744818_3744950_-	entericidin	NA	NA	NA	NA	NA
AUK84517.1|3744981_3745107_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83976.1|3745215_3745422_-|integrase	integrase	integrase	NA	NA	NA	NA
3746045:3746063	attR	GCGACCCGCAGCGTGCCGG	NA	NA	NA	NA
>prophage 28
CP017925	Bordetella pertussis strain J203, complete genome	4104273	3751357	3788081	4104273	integrase,transposase	Burkholderia_phage(11.11%)	38	3747896:3747913	3793585:3793602
3747896:3747913	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AUK83983.1|3751357_3752260_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83984.1|3752270_3752912_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83985.1|3753078_3753321_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83986.1|3753467_3754370_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK83987.1|3754405_3754873_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AUK83988.1|3755106_3755484_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83989.1|3755480_3755663_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83990.1|3755666_3756653_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AUK83991.1|3756649_3757297_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AUK83992.1|3757354_3757882_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83993.1|3757918_3759103_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AUK83994.1|3759113_3759455_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
AUK83995.1|3759447_3759567_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83996.1|3759567_3759768_+	hypothetical protein	NA	NA	NA	NA	NA
AUK83997.1|3759764_3760754_-|integrase	integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AUK83998.1|3762240_3764211_-	hypothetical protein	NA	NA	NA	NA	NA
AUK83999.1|3764452_3764851_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84000.1|3764859_3765783_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84001.1|3766288_3767191_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84002.1|3767337_3768240_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84003.1|3768470_3770162_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AUK84004.1|3770210_3770483_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AUK84005.1|3770479_3770851_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AUK84006.1|3770946_3771081_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AUK84007.1|3771486_3772896_+	chromosomal replication initiation protein DnaA	NA	NA	NA	NA	NA
AUK84008.1|3772898_3774008_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
AUK84009.1|3774102_3776556_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AUK84010.1|3776674_3777466_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84011.1|3777585_3779013_+	amidase	NA	NA	NA	NA	NA
AUK84518.1|3779051_3780023_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK84012.1|3780107_3780311_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84013.1|3780441_3781605_+	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AUK84014.1|3781692_3782538_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK84015.1|3784142_3785045_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84016.1|3785041_3785386_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84017.1|3785599_3785974_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84018.1|3786048_3787107_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK84019.1|3787130_3788081_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3793585:3793602	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
>prophage 29
CP017925	Bordetella pertussis strain J203, complete genome	4104273	4026444	4079828	4104273	transposase	Planktothrix_phage(40.0%)	45	NA	NA
AUK84237.1|4026444_4027395_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84238.1|4027564_4028791_+	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase	NA	NA	NA	NA	NA
AUK84239.1|4028990_4029857_+	AAA family ATPase	NA	NA	NA	NA	NA
AUK84240.1|4029849_4030812_+	NUDIX hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AUK84241.1|4030912_4031863_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84242.1|4032009_4032912_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84243.1|4033058_4033961_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84244.1|4033957_4035451_-	RND transporter	NA	NA	NA	NA	NA
AUK84245.1|4035447_4038555_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AUK84246.1|4038551_4041620_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AUK84247.1|4041616_4042867_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK84533.1|4043047_4043800_-	cell division protein ZapD	NA	NA	NA	NA	NA
AUK84534.1|4043841_4044486_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AUK84248.1|4044494_4045334_-	prepilin peptidase	NA	NA	NA	NA	NA
AUK84249.1|4045574_4046318_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84250.1|4046400_4046748_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUK84251.1|4046845_4047688_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AUK84252.1|4047732_4048620_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AUK84253.1|4048646_4048835_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AUK84254.1|4048932_4050390_+	MFS transporter	NA	NA	NA	NA	NA
AUK84255.1|4050376_4051903_+	glycerol kinase	NA	NA	NA	NA	NA
AUK84256.1|4051921_4052389_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84257.1|4052388_4053411_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK84258.1|4053531_4054272_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AUK84259.1|4054326_4055427_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK84260.1|4055428_4056619_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK84261.1|4056738_4057755_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AUK84262.1|4058073_4058745_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AUK84263.1|4058741_4059650_+	permease	NA	NA	NA	NA	NA
AUK84264.1|4059861_4060509_+	chemotaxis protein CheD	NA	NA	NA	NA	NA
AUK84535.1|4064369_4065437_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AUK84265.1|4065447_4066257_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK84266.1|4066346_4067120_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK84267.1|4067350_4068253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84268.1|4068264_4069164_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84269.1|4069153_4070308_+	acyl-CoA transferase	NA	NA	NA	NA	NA
AUK84270.1|4070347_4071760_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84271.1|4071782_4072751_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK84272.1|4072752_4073577_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK84273.1|4073573_4074335_+	nitrobenzoate reductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
AUK84274.1|4074415_4075102_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84275.1|4075299_4076283_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AUK84276.1|4076279_4077059_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK84536.1|4077146_4078379_+	CoA transferase	NA	NA	NA	NA	NA
AUK84277.1|4078925_4079828_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
