The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP017926	Bordetella pertussis strain J230, complete genome	4106384	0	64055	4106384	transposase,protease,tRNA	Natrialba_phage(12.5%)	57	NA	NA
AUK84539.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AUK84540.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
AUK84541.1|2605_3403_+	chromosome partitioning protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AUK84542.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK84543.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AUK84544.1|5124_5910_+	L-asparaginase	NA	NA	NA	NA	NA
AUK84545.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84546.1|6721_7912_+	translation elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AUK84547.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AUK84548.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AUK84549.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AUK84550.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AUK84551.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AUK84552.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AUK84553.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AUK84554.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AUK87905.1|20126_20531_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84555.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84556.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AUK87906.1|26575_27286_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84557.1|27282_28185_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84558.1|28314_28614_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84559.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84560.1|29141_30359_-	thiolase	NA	NA	NA	NA	NA
AUK84561.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AUK84562.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87907.1|32214_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK84563.1|33048_34470_+	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
AUK84564.1|34673_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84565.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AUK84566.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AUK84567.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AUK84568.1|40060_40600_+	D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AUK84569.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK84570.1|41318_42212_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84571.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUK84572.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AUK84573.1|43346_43526_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84574.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87908.1|45224_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84575.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUK84576.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84577.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AUK84578.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AUK84579.1|50189_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84580.1|51134_52391_+	muropeptide transporter AmpG	NA	NA	NA	NA	NA
AUK84581.1|53622_54357_-	glutamate racemase	NA	NA	NA	NA	NA
AUK84582.1|54362_54953_-	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AUK84583.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK84584.1|55663_56425_-	glutamate ABC transporter permease	NA	NA	NA	NA	NA
AUK84585.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK84586.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84587.1|59248_60475_-	serine kinase HipA	NA	NA	NA	NA	NA
AUK84588.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK87909.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84589.1|62442_63417_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84590.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
>prophage 2
CP017926	Bordetella pertussis strain J230, complete genome	4106384	69133	122073	4106384	transposase,tRNA	Planktothrix_phage(20.0%)	53	NA	NA
AUK84596.1|69133_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84597.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AUK84598.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AUK84599.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK84600.1|74357_74939_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AUK84601.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84602.1|75280_76123_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84603.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AUK84604.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87910.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84605.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AUK84606.1|82822_83527_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AUK84607.1|83523_84630_-	glycosyl transferase	NA	NA	NA	NA	NA
AUK84608.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AUK84609.1|85481_86669_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AUK84610.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AUK84611.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AUK84612.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AUK84613.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUK84614.1|90793_91846_-	oxidoreductase	NA	NA	NA	NA	NA
AUK87911.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AUK84615.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AUK84616.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84617.1|94468_95272_-	pantothenate kinase	NA	NA	NA	NA	NA
AUK84618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AUK84619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK84620.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AUK84621.1|98332_98800_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84622.1|98889_99111_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84623.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84624.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK87912.1|100607_101786_+	peptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	5.8e-66
AUK84625.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUK84626.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AUK84627.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AUK84628.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AUK84629.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AUK84630.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AUK84631.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AUK84632.1|107427_108330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84633.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK84634.1|110552_111182_-	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
AUK84635.1|111243_111927_-	cell division protein	NA	NA	NA	NA	NA
AUK84636.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK87913.1|113906_114254_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84637.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87914.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK84638.1|116036_116837_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK84639.1|116833_117709_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK84640.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK84641.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AUK84642.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AUK84643.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP017926	Bordetella pertussis strain J230, complete genome	4106384	164894	301504	4106384	transposase,protease,tRNA	Klosneuvirus(10.53%)	118	NA	NA
AUK84680.1|164894_165845_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84681.1|167288_168191_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84682.1|168168_168798_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84683.1|169080_170511_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
AUK84684.1|170544_171174_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AUK84685.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AUK84686.1|172866_173538_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87916.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
AUK84687.1|174350_175253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84688.1|176368_176896_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84689.1|176987_177803_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84690.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
AUK84691.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AUK84692.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84693.1|181337_182423_+	ATP-binding protein	NA	NA	NA	NA	NA
AUK84694.1|182426_184331_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84695.1|184327_188002_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84696.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AUK84697.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
AUK84698.1|189083_189503_-	glyoxalase	NA	NA	NA	NA	NA
AUK84699.1|189531_189879_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK87917.1|190152_190602_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84700.1|190756_193027_+	lysine decarboxylase	NA	NA	NA	NA	NA
AUK84701.1|193102_194308_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84702.1|194454_195357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84703.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
AUK84704.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AUK84705.1|197379_198480_+	glycine cleavage system protein T	NA	NA	NA	NA	NA
AUK84706.1|198561_198936_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AUK84707.1|198995_201860_+	glycine dehydrogenase (aminomethyl-transferring)	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AUK84708.1|202004_202745_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84709.1|202814_204026_+	formyl-CoA transferase	NA	NA	NA	NA	NA
AUK84710.1|204054_205023_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84711.1|205684_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84712.1|206743_207067_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AUK87918.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
AUK84713.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AUK84714.1|209042_209339_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84715.1|209364_209640_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AUK84716.1|209696_210341_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK84717.1|210340_211027_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK87919.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84718.1|212058_212784_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK84719.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK84720.1|214276_215209_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK84721.1|215666_218462_-	peptidase S8	NA	NA	NA	NA	NA
AUK84722.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AUK84723.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AUK84724.1|222827_223376_-	GNAT family N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AUK84725.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AUK84726.1|224454_225405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84727.1|225623_226319_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84728.1|226335_227748_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AUK84729.1|227860_229291_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AUK84730.1|229332_231246_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
AUK84731.1|231564_232131_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AUK84732.1|232221_233223_+	restriction endonuclease	NA	NA	NA	NA	NA
AUK84733.1|233337_234288_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84734.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84735.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84736.1|236370_237168_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK84737.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AUK84738.1|238777_239533_+	gamma-hydroxybutyrate dehydrogenase	NA	D2K0C8	Staphylococcus_phage	55.0	4.6e-32
AUK84739.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84740.1|240336_241380_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK87920.1|242393_243653_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84741.1|245063_246020_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84742.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AUK84743.1|246526_247882_-	poly(A) polymerase	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AUK84744.1|247882_248581_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84745.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AUK84746.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AUK84747.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AUK84748.1|251624_253514_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AUK87921.1|253618_254239_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84749.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
AUK84750.1|255697_256234_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AUK84751.1|256385_257777_+	fumarate hydratase, class II	NA	NA	NA	NA	NA
AUK84752.1|257793_258774_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84753.1|258909_259893_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK84754.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84755.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK84756.1|262725_263850_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK84757.1|263863_264844_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK84758.1|265574_266525_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84759.1|266539_266911_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84760.1|267084_267630_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84761.1|267755_269333_+	cytochrome d terminal oxidase subunit 1	NA	NA	NA	NA	NA
AUK84762.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AUK84763.1|270516_270642_+	cyd operon protein YbgT	NA	NA	NA	NA	NA
AUK84764.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AUK84765.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AUK84766.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
AUK84767.1|275819_276098_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84768.1|277141_278092_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84769.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AUK84770.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84771.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AUK84772.1|279656_280268_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK84773.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
AUK84774.1|281300_282683_-	cytochrome b	NA	NA	NA	NA	NA
AUK84775.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AUK84776.1|283528_283987_+	large-conductance mechanosensitive channel protein	NA	NA	NA	NA	NA
AUK84777.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AUK87922.1|284841_285978_+	2-alkenal reductase	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AUK84778.1|285974_286925_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84779.1|287023_287650_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84780.1|287672_288599_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AUK84781.1|288607_290194_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK84782.1|290190_291195_-	acetylesterase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AUK84783.1|291394_292255_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK84784.1|292286_293288_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84785.1|293358_294168_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK84786.1|294245_296105_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AUK84787.1|296233_297436_-	MFS transporter	NA	NA	NA	NA	NA
AUK84788.1|297549_298431_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84789.1|299933_300494_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AUK84790.1|300553_301504_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP017926	Bordetella pertussis strain J230, complete genome	4106384	390858	448367	4106384	transposase	Orpheovirus(14.29%)	50	NA	NA
AUK84877.1|390858_391809_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84878.1|391951_392863_+	reductase	NA	NA	NA	NA	NA
AUK84879.1|392859_393108_+	NrdH-redoxin	NA	NA	NA	NA	NA
AUK84880.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
AUK84881.1|394382_395378_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84882.1|395400_396621_-	acyl-CoA transferase	NA	NA	NA	NA	NA
AUK84883.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84884.1|397258_397651_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84885.1|397539_398892_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84886.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87928.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
AUK84887.1|401158_402142_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84888.1|402818_403589_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK84889.1|403585_404764_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK84890.1|404931_406638_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AUK84891.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84892.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
AUK84893.1|409210_410203_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84894.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84895.1|411331_412312_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84896.1|412387_413290_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84897.1|413426_414341_+	EamA family transporter	NA	NA	NA	NA	NA
AUK84898.1|414337_414997_+	hypothetical protein	NA	NA	NA	NA	NA
AUK84899.1|415086_416010_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AUK84900.1|416015_416471_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84901.1|416467_417571_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84902.1|417758_419378_-	dolichyl-phosphate-mannose--protein mannosyltransferase	NA	NA	NA	NA	NA
AUK84903.1|419374_420433_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AUK84904.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK84905.1|421149_422127_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84906.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AUK84907.1|423524_425036_+	TRAP ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK87929.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK84908.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
AUK84909.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.8e-41
AUK84910.1|430371_431274_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK84911.1|431405_431804_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AUK84912.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
AUK84913.1|432773_433118_-	TIGR01244 family protein	NA	NA	NA	NA	NA
AUK84914.1|433217_434618_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84915.1|436406_436925_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AUK84916.1|437035_437791_+	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AUK84917.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
AUK84918.1|439211_439997_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK84919.1|440063_441035_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK84920.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK84921.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK84922.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK84923.1|444441_445635_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK84924.1|447416_448367_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP017926	Bordetella pertussis strain J230, complete genome	4106384	619754	720218	4106384	transposase,terminase,tail,tRNA	uncultured_Caudovirales_phage(14.29%)	110	NA	NA
AUK85077.1|619754_620705_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85078.1|621403_621787_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85079.1|621844_622447_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87936.1|622464_622866_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85080.1|622981_623893_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85081.1|623889_624471_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AUK87937.1|625274_626000_+	arginyltransferase	NA	NA	NA	NA	NA
AUK85082.1|626040_627090_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AUK85083.1|627237_627816_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AUK85084.1|628202_629180_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK85085.1|629273_633668_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AUK85086.1|633868_634717_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85087.1|634875_635688_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AUK85088.1|635743_636694_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85089.1|636792_637593_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85090.1|637654_638038_+	thiol reductase thioredoxin	NA	NA	NA	NA	NA
AUK85091.1|638049_639483_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AUK85092.1|639689_640019_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85093.1|640021_640771_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85094.1|640953_641874_+	branched chain amino acid aminotransferase	NA	NA	NA	NA	NA
AUK85095.1|641920_642133_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85096.1|642155_642578_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AUK85097.1|642594_643695_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK85098.1|643791_645309_-	peptidase	NA	NA	NA	NA	NA
AUK85099.1|645384_646224_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AUK87938.1|646245_647118_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85100.1|647208_648303_-	porin	NA	NA	NA	NA	NA
AUK85101.1|648596_649499_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87939.1|649621_650563_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85102.1|650646_651006_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85103.1|651387_652425_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85104.1|652741_654082_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
AUK85105.1|654091_654544_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85106.1|654649_655822_+	monooxygenase	NA	NA	NA	NA	NA
AUK85107.1|655887_656913_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AUK85108.1|656953_657193_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK85109.1|657262_658852_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AUK85110.1|658851_659400_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AUK85111.1|659480_660053_+	Holliday junction DNA helicase RuvA	NA	NA	NA	NA	NA
AUK85112.1|660071_660983_-	NAD-dependent dehydratase	NA	NA	NA	NA	NA
AUK85113.1|661056_662025_-	serine dehydratase	NA	NA	NA	NA	NA
AUK85114.1|662147_663221_+	Holliday junction DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AUK85115.1|663225_665046_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AUK85116.1|665122_666025_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85117.1|666161_666497_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85118.1|666630_667281_+	carbonate dehydratase	NA	NA	NA	NA	NA
AUK85119.1|667302_668721_-	amidase	NA	NA	NA	NA	NA
AUK85120.1|668790_669546_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87940.1|669514_670273_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK85121.1|670283_671165_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK85122.1|671181_671889_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AUK85123.1|671891_672650_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AUK85124.1|672859_674602_+	sulfite reductase	NA	NA	NA	NA	NA
AUK85125.1|674594_675119_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85126.1|675158_675953_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK85127.1|676120_677194_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85128.1|677292_678243_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85129.1|678494_678701_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87941.1|678772_679384_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AUK85130.1|679863_680184_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85131.1|680176_680875_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85132.1|680889_681111_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85133.1|681128_682079_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85134.1|682718_683204_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
AUK85135.1|683190_684468_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AUK85136.1|684470_685889_+	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AUK85137.1|685860_686973_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	49.7	2.1e-102
AUK85138.1|686978_687221_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AUK85139.1|687343_687946_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AUK85140.1|688374_689325_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85141.1|689999_690251_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85142.1|690313_690796_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AUK85143.1|690797_690998_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85144.1|690997_691393_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AUK85145.1|691389_691788_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AUK85146.1|691784_692207_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85147.1|692214_692715_+	hypothetical protein	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AUK85148.1|692969_693488_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AUK85149.1|693497_693827_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AUK85150.1|693844_694135_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AUK85151.1|694160_696773_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AUK85152.1|696782_697142_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85153.1|697209_697743_+	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AUK85154.1|697739_698129_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AUK85155.1|698121_702078_+	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AUK85156.1|702082_702499_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85157.1|702717_702981_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AUK85158.1|702980_703793_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85159.1|703797_704040_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85160.1|704018_704570_+	lysozyme	NA	NA	NA	NA	NA
AUK85161.1|704569_705085_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85162.1|705081_705363_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85163.1|705362_705584_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85164.1|705912_706584_-	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AUK85165.1|706511_706880_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85166.1|706939_707626_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AUK85167.1|707606_708179_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AUK85168.1|708244_709975_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AUK85169.1|710027_710456_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK85170.1|710458_711139_+	protein TolQ	NA	NA	NA	NA	NA
AUK85171.1|711138_711597_+	protein TolR	NA	NA	NA	NA	NA
AUK85172.1|711633_712608_+	protein TolA	NA	NA	NA	NA	NA
AUK85173.1|712624_713941_+	Tol-Pal system beta propeller repeat protein TolB	NA	NA	NA	NA	NA
AUK85174.1|713972_714470_+	peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
AUK85175.1|714556_715246_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AUK85176.1|715245_716295_+	iron-siderophore ABC transporter permease	NA	NA	NA	NA	NA
AUK85177.1|716291_717086_+	iron ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AUK85178.1|717254_717605_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85179.1|717580_718138_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85180.1|719267_720218_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP017926	Bordetella pertussis strain J230, complete genome	4106384	747143	820256	4106384	transposase	Streptococcus_phage(16.67%)	59	NA	NA
AUK85201.1|747143_748094_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85202.1|748748_749846_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AUK85203.1|749879_751145_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AUK85204.1|751350_752253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85205.1|752294_752450_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85206.1|752496_753087_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AUK87943.1|753102_755547_-	ligand-gated channel	NA	NA	NA	NA	NA
AUK85207.1|755666_756638_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85208.1|756769_757294_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AUK85209.1|757253_758204_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85210.1|758424_760620_-	DNA methylase	NA	NA	NA	NA	NA
AUK87944.1|760692_761040_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK85211.1|761222_762173_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85212.1|762288_762711_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK85213.1|762794_763589_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK85214.1|763754_764891_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AUK85215.1|764961_766095_-	GTPase ObgE	NA	NA	NA	NA	NA
AUK85216.1|766244_766505_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AUK85217.1|766538_766850_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AUK85218.1|767274_768423_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AUK85219.1|768537_769503_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AUK85220.1|769771_770638_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85221.1|770768_772817_+	hydantoinase	NA	NA	NA	NA	NA
AUK85222.1|772834_774832_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUK85223.1|774866_776204_+	amino acid deaminase	NA	NA	NA	NA	NA
AUK85224.1|778374_779856_+	succinate-semialdehyde dehydrogenase (NADP(+))	NA	NA	NA	NA	NA
AUK85225.1|779871_780429_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AUK87945.1|780541_780721_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85226.1|780805_786028_+	hemolysin	NA	NA	NA	NA	NA
AUK85227.1|786105_788244_+	peptidase C39	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AUK85228.1|788240_789563_+	hemolysin D	NA	NA	NA	NA	NA
AUK85229.1|789564_790989_+	CyaE	NA	NA	NA	NA	NA
AUK85230.1|791079_791988_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85231.1|792052_792967_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK85232.1|793373_793607_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85233.1|793804_794488_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK85234.1|794519_795248_+	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
AUK85235.1|795277_796138_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUK85236.1|796145_796712_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85237.1|796800_797757_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK85238.1|797801_798554_-	3-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK85239.1|798550_800296_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AUK85240.1|800380_801115_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85241.1|801431_802454_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK87946.1|802469_803105_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85242.1|803336_804344_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AUK85243.1|804384_805917_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUK85244.1|805913_807032_-	deacylase	NA	NA	NA	NA	NA
AUK85245.1|807028_807811_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK85246.1|807822_808686_-	ABC transporter	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AUK87947.1|808704_809802_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85247.1|809870_810797_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85248.1|810831_812526_-	acetolactate synthase	NA	NA	NA	NA	NA
AUK85249.1|812725_813619_-	mechanosensitive ion channel protein	NA	NA	NA	NA	NA
AUK85250.1|813766_814717_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85251.1|814815_815472_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85252.1|815619_818328_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AUK85253.1|818337_819357_+	fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AUK85254.1|819353_820256_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP017926	Bordetella pertussis strain J230, complete genome	4106384	858747	912878	4106384	transposase,holin	Vibrio_phage(25.0%)	44	NA	NA
AUK85287.1|858747_860706_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AUK85288.1|860788_861739_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85289.1|861959_862628_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK85290.1|862751_863858_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK85291.1|863870_866984_+	multidrug efflux protein	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AUK85292.1|866980_868474_+	RND transporter	NA	NA	NA	NA	NA
AUK85293.1|868488_869160_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87951.1|869203_869656_-	azurin	NA	NA	NA	NA	NA
AUK85294.1|869838_870486_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87952.1|870589_872638_+	hydantoinase	NA	NA	NA	NA	NA
AUK85295.1|872634_874647_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUK85296.1|874672_876007_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87953.1|876115_877108_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85297.1|877174_879259_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AUK85298.1|879283_880255_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85299.1|880383_881385_-	peptidase M14	NA	NA	NA	NA	NA
AUK85300.1|881418_882570_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK85301.1|882773_883664_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85302.1|883741_884566_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK87954.1|884762_885779_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK85303.1|885975_886959_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK85304.1|887017_888145_-	argininosuccinate lyase	NA	NA	NA	NA	NA
AUK85305.1|888135_888510_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85306.1|888557_889946_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85307.1|889976_890966_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85308.1|891076_892309_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AUK85309.1|892590_893391_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85310.1|893413_895645_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AUK85311.1|896432_896879_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AUK85312.1|896900_897647_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AUK85313.1|897790_898768_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AUK85314.1|899401_900013_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AUK85315.1|900006_901224_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AUK85316.1|901364_902315_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85317.1|902311_903031_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85318.1|903151_905311_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AUK85319.1|905401_905671_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
AUK87955.1|905964_906492_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85320.1|906510_907290_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AUK85321.1|907457_908474_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AUK85322.1|908546_909038_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AUK85323.1|909048_910764_-	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AUK85324.1|911234_911846_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85325.1|911927_912878_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP017926	Bordetella pertussis strain J230, complete genome	4106384	937377	999526	4106384	transposase	Bacillus_virus(15.38%)	57	NA	NA
AUK85345.1|937377_938280_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85346.1|938276_938660_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK85347.1|938714_940529_-	metal ABC transporter permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AUK87957.1|940678_941506_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AUK85348.1|941551_942532_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK85349.1|942528_942741_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85350.1|942737_943919_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85351.1|944082_944817_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AUK85352.1|944818_947431_-	penicillin-binding protein	NA	NA	NA	NA	NA
AUK85353.1|947566_949480_-	S9 family peptidase	NA	NA	NA	NA	NA
AUK85354.1|950095_950506_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
AUK85355.1|950603_951689_+	DNA polymerase IV	NA	NA	NA	NA	NA
AUK85356.1|951787_952738_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85357.1|952734_953709_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85358.1|953854_954745_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.3e-05
AUK87958.1|955021_955414_-	hypothetical protein	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AUK85359.1|955543_956494_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85360.1|956523_956706_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AUK85361.1|957478_958660_-	MFS transporter	NA	NA	NA	NA	NA
AUK85362.1|958875_959553_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AUK85363.1|959549_960275_-	bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase	NA	NA	NA	NA	NA
AUK85364.1|960400_960982_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85365.1|961352_964034_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AUK87959.1|964036_965167_+	phosphoserine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
AUK85366.1|965159_966245_+	chorismate mutase	NA	NA	NA	NA	NA
AUK85367.1|966331_967231_+	prephenate dehydrogenase	NA	NA	NA	NA	NA
AUK85368.1|967227_968556_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AUK85369.1|968570_969242_+	cytidylate kinase	NA	NA	NA	NA	NA
AUK85370.1|969429_971145_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AUK85371.1|971146_971506_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AUK85372.1|971697_972012_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85373.1|972054_973275_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AUK85374.1|973271_974213_+	hypothetical protein	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AUK85375.1|974209_975199_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AUK87960.1|975488_975818_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85376.1|975916_976867_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85377.1|976947_977859_+	cysteine synthase B	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AUK85378.1|977919_979065_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AUK85379.1|979084_979999_+	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AUK85380.1|980070_980820_+	electron transporter RnfB	NA	NA	NA	NA	NA
AUK85381.1|980819_981749_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AUK85382.1|981992_983819_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK85383.1|983901_984543_+	peroxidase	NA	NA	NA	NA	NA
AUK85384.1|984732_985767_+	sulfate transporter subunit	NA	NA	NA	NA	NA
AUK85385.1|985782_985986_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85386.1|986007_986682_+	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA	NA
AUK85387.1|986796_987579_+	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
AUK85388.1|987603_988668_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AUK87961.1|989465_990374_+	sulfate adenylyltransferase small subunit	NA	NA	NA	NA	NA
AUK85389.1|991861_993136_+	radical SAM protein	NA	NA	NA	NA	NA
AUK85390.1|993289_993670_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85391.1|993677_994550_-	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AUK85392.1|994855_995236_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AUK85393.1|995485_996172_+	coenzyme A pyrophosphatase	NA	NA	NA	NA	NA
AUK85394.1|996267_997218_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85395.1|997322_998372_+	aldo/keto reductase	NA	NA	NA	NA	NA
AUK87962.1|998509_999526_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP017926	Bordetella pertussis strain J230, complete genome	4106384	1023330	1081415	4106384	transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
AUK85409.1|1023330_1024233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85410.1|1024379_1025120_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AUK85411.1|1025314_1027351_+	transketolase	NA	NA	NA	NA	NA
AUK85412.1|1027368_1028379_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AUK85413.1|1028496_1029690_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AUK85414.1|1029719_1030493_-	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK85415.1|1030489_1031680_-	acetate kinase	NA	NA	NA	NA	NA
AUK85416.1|1031705_1032644_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AUK87965.1|1032640_1034989_-	3-hydroxyalkanoate synthetase	NA	NA	NA	NA	NA
AUK85417.1|1035143_1035785_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK85418.1|1037298_1037847_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AUK85419.1|1037865_1038351_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK85420.1|1038528_1039467_+	cytochrome C biogenesis protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AUK85421.1|1039469_1039787_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85422.1|1039832_1040777_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85423.1|1042457_1043108_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AUK85424.1|1043161_1043497_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87966.1|1043511_1044354_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AUK85425.1|1044370_1044652_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85426.1|1044725_1044989_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AUK85427.1|1045280_1046183_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85428.1|1046481_1047219_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AUK85429.1|1047654_1047978_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AUK85430.1|1048012_1048573_+	transcriptional regulator FlhC	NA	NA	NA	NA	NA
AUK85431.1|1048693_1049569_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AUK85432.1|1049581_1050529_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
AUK85433.1|1050630_1050924_+	two-component system response regulator	NA	NA	NA	NA	NA
AUK85434.1|1050950_1053008_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AUK85435.1|1053022_1053523_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AUK85436.1|1053596_1055303_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AUK85437.1|1056166_1057219_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AUK85438.1|1057271_1057661_+	two-component system response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AUK85439.1|1057669_1058302_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AUK87967.1|1058401_1059418_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK87968.1|1060248_1061256_+	aldo/keto reductase	NA	NA	NA	NA	NA
AUK85440.1|1061252_1062896_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AUK85441.1|1062892_1063780_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AUK85442.1|1063920_1064394_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
AUK85443.1|1064383_1065406_-	phosphate starvation-inducible protein PhoH	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AUK85444.1|1065402_1066830_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AUK87969.1|1067767_1068784_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK85445.1|1069116_1070052_-	protein-export membrane protein SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AUK85446.1|1070101_1071982_-	protein-export membrane protein SecD	NA	NA	NA	NA	NA
AUK85447.1|1072048_1072393_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AUK85448.1|1072537_1073674_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AUK85449.1|1073670_1074744_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AUK85450.1|1074901_1076338_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AUK87970.1|1076428_1077070_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AUK87971.1|1077405_1078422_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK87972.1|1080464_1081415_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP017926	Bordetella pertussis strain J230, complete genome	4106384	1156531	1218655	4106384	transposase,tRNA	Erysipelothrix_phage(33.33%)	52	NA	NA
AUK85504.1|1156531_1157434_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85505.1|1157580_1158204_-	fimbrial protein	NA	NA	NA	NA	NA
AUK85506.1|1158378_1160661_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AUK85507.1|1160815_1163512_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AUK85508.1|1163637_1164126_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85509.1|1164161_1166024_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
AUK85510.1|1166002_1166212_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85511.1|1166536_1169407_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AUK85512.1|1169452_1170667_+	dihydrolipoamide succinyltransferase	NA	NA	NA	NA	NA
AUK85513.1|1170896_1172324_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AUK85514.1|1172421_1173513_+	cell division protein ZapE	NA	NA	NA	NA	NA
AUK85515.1|1173525_1174284_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK85516.1|1174371_1175274_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85517.1|1175270_1176221_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85518.1|1176350_1177334_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK85519.1|1177388_1178111_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK85520.1|1179589_1180945_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AUK85521.1|1181025_1183401_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
AUK85522.1|1183565_1185641_+	helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AUK87978.1|1185702_1186497_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AUK85523.1|1186604_1187567_+	RNA pseudouridine synthase	NA	NA	NA	NA	NA
AUK85524.1|1187554_1188310_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85525.1|1188417_1190055_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AUK85526.1|1190122_1190860_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK85527.1|1190962_1191538_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AUK85528.1|1191710_1192247_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87979.1|1192279_1192594_+	periplasmic lipoprotein involved in iron transport	NA	NA	NA	NA	NA
AUK85529.1|1192609_1193455_+	FTR1 family iron permease	NA	NA	NA	NA	NA
AUK85530.1|1193493_1194873_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85531.1|1194950_1195832_+	phenazine biosynthesis protein PhzC/PhzF	NA	NA	NA	NA	NA
AUK85532.1|1195978_1196881_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85533.1|1196877_1197288_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUK85534.1|1197395_1198250_-	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AUK85535.1|1198242_1199205_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85536.1|1199250_1200375_-	racemase	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AUK85537.1|1200480_1201359_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85538.1|1201483_1202263_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK85539.1|1202416_1203838_+	MFS transporter	NA	NA	NA	NA	NA
AUK85540.1|1204272_1205970_+	sodium:proline symporter	NA	NA	NA	NA	NA
AUK85541.1|1205998_1206121_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87980.1|1206196_1207138_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
AUK85542.1|1207464_1208211_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85543.1|1208218_1209145_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85544.1|1209266_1210184_+	oxidoreductase	NA	NA	NA	NA	NA
AUK85545.1|1210223_1211177_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK85546.1|1211201_1211780_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85547.1|1213453_1214062_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85548.1|1214139_1214493_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87981.1|1214576_1215509_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AUK85549.1|1215816_1216719_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85550.1|1216805_1217756_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85551.1|1217752_1218655_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP017926	Bordetella pertussis strain J230, complete genome	4106384	1417073	1470253	4106384	transposase,tRNA	Salmonella_phage(22.22%)	47	NA	NA
AUK85714.1|1417073_1418024_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85715.1|1418190_1418544_+	cytochrome C	NA	NA	NA	NA	NA
AUK85716.1|1418556_1418919_+	cytochrome	NA	NA	NA	NA	NA
AUK85717.1|1418960_1419386_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85718.1|1419588_1420845_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AUK85719.1|1421043_1422024_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85720.1|1422173_1423415_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85721.1|1423513_1424464_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85722.1|1424472_1425168_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AUK85723.1|1425209_1427924_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK85724.1|1427989_1428589_-	potassium-transporting ATPase subunit C	NA	NA	NA	NA	NA
AUK85725.1|1428599_1430765_-	potassium-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AUK85726.1|1430788_1432573_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
AUK85727.1|1432572_1432662_-	potassium-transporting ATPase subunit F	NA	NA	NA	NA	NA
AUK85728.1|1433356_1433629_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85729.1|1433628_1435695_+	cation acetate symporter	NA	NA	NA	NA	NA
AUK85730.1|1435691_1436594_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85731.1|1436757_1437090_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AUK85732.1|1437086_1437773_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AUK85733.1|1437759_1438719_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AUK85734.1|1438751_1441121_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AUK85735.1|1441120_1441753_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AUK85736.1|1441854_1443195_+	recombination factor protein RarA	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AUK85737.1|1443241_1444597_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AUK85738.1|1444887_1445124_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85739.1|1445311_1445629_-	virulence factor	NA	NA	NA	NA	NA
AUK85740.1|1445901_1446417_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AUK85741.1|1446510_1446672_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85742.1|1446687_1447443_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AUK85743.1|1447781_1447988_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85744.1|1447995_1448655_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AUK85745.1|1448949_1451154_-	porin	NA	NA	NA	NA	NA
AUK85746.1|1451264_1452488_-	multidrug transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AUK85747.1|1452610_1453585_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK85748.1|1453652_1454846_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK85749.1|1454860_1455661_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AUK85750.1|1455657_1457514_-	IucA/IucC family protein	NA	NA	NA	NA	NA
AUK85751.1|1457510_1458116_-	siderophore biosynthesis protein	NA	NA	NA	NA	NA
AUK85752.1|1458134_1459520_-	alcaligin biosynthesis protein	NA	NA	NA	NA	NA
AUK85753.1|1460245_1461472_+	transporter	NA	NA	NA	NA	NA
AUK85754.1|1461560_1462343_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK85755.1|1462489_1463392_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85756.1|1463418_1464192_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AUK85757.1|1464203_1465445_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85758.1|1467274_1468177_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85759.1|1468208_1469306_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AUK85760.1|1469302_1470253_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP017926	Bordetella pertussis strain J230, complete genome	4106384	1570014	1641120	4106384	transposase	Ectocarpus_siliculosus_virus(11.11%)	55	NA	NA
AUK85851.1|1570014_1570965_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85852.1|1570986_1572207_+	YggW family oxidoreductase	NA	NA	NA	NA	NA
AUK85853.1|1572392_1573805_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AUK85854.1|1573868_1574936_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AUK85855.1|1574935_1576423_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AUK88001.1|1576432_1577377_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85856.1|1577536_1578235_+	quercetin 2,3-dioxygenase	NA	NA	NA	NA	NA
AUK85857.1|1578312_1579218_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85858.1|1579237_1580140_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85859.1|1580286_1581081_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AUK85860.1|1581085_1582756_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AUK85861.1|1582879_1583929_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK85862.1|1584250_1585027_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AUK85863.1|1585091_1585994_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85864.1|1587287_1588091_+	2,5-didehydrogluconate reductase B	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AUK85865.1|1590784_1591171_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AUK85866.1|1591186_1593277_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
AUK85867.1|1593328_1594282_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AUK88002.1|1594296_1595184_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85868.1|1595321_1596848_+	methylmalonate-semialdehyde dehydrogenase (acylating)	NA	NA	NA	NA	NA
AUK88003.1|1596946_1597447_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AUK85869.1|1597770_1599726_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK85870.1|1599893_1601978_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88004.1|1602004_1602430_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85871.1|1603645_1604416_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AUK85872.1|1604415_1605156_+	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK85873.1|1605197_1606367_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AUK85874.1|1606398_1608483_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AUK85875.1|1608479_1609370_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK85876.1|1609366_1610464_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUK85877.1|1610486_1611776_+	Vi polysaccharide biosynthesis protein VipA/TviB	NA	NA	NA	NA	NA
AUK85878.1|1611787_1612813_+	LPS biosynthesis protein WbpP	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AUK85879.1|1612809_1614867_+	beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase	NA	NA	NA	NA	NA
AUK85880.1|1614880_1616056_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUK85881.1|1616137_1617088_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85882.1|1617146_1617920_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK85883.1|1617912_1619469_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK85884.1|1619465_1620416_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85885.1|1621742_1622345_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85886.1|1622584_1623286_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK85887.1|1623279_1624062_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AUK85888.1|1624246_1625197_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85889.1|1625295_1626033_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AUK85890.1|1626222_1626981_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK85891.1|1627027_1628029_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK85892.1|1628194_1629163_-	phenol degradation protein meta	NA	NA	NA	NA	NA
AUK85893.1|1630702_1631671_+	AAA family ATPase	NA	NA	NA	NA	NA
AUK85894.1|1631679_1632621_+	MoxR protein	NA	NA	NA	NA	NA
AUK88005.1|1633094_1634105_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88007.1|1634095_1635610_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85895.1|1635606_1636953_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88006.1|1636955_1637990_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AUK85896.1|1638039_1639665_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AUK85897.1|1639758_1640238_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85898.1|1640217_1641120_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP017926	Bordetella pertussis strain J230, complete genome	4106384	1661959	1723307	4106384	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	54	NA	NA
AUK85915.1|1661959_1662910_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85916.1|1663018_1663207_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88010.1|1663203_1663926_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AUK85917.1|1664364_1665552_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88011.1|1665555_1665906_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK85918.1|1666139_1667552_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85919.1|1667655_1668627_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK85920.1|1668640_1669354_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK85921.1|1669358_1670276_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85922.1|1670382_1670679_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85923.1|1670825_1671728_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85924.1|1672886_1675820_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AUK85925.1|1675819_1676164_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AUK85926.1|1676160_1677789_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AUK85927.1|1677788_1678265_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AUK85928.1|1678264_1678546_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AUK85929.1|1678542_1678869_+	cation:proton antiporter	NA	NA	NA	NA	NA
AUK85930.1|1679024_1679975_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85931.1|1680018_1680561_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85932.1|1680658_1681507_+	hydrolase	NA	NA	NA	NA	NA
AUK88012.1|1681556_1682006_+|tRNA	tRNA-specific adenosine deaminase	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
AUK85933.1|1682002_1683004_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
AUK85934.1|1683016_1683811_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK85935.1|1683859_1685761_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK85936.1|1685757_1686381_-	hypothetical protein	NA	NA	NA	NA	NA
AUK85937.1|1686507_1687632_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK85938.1|1688012_1689617_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
AUK85939.1|1689772_1690549_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AUK85940.1|1690633_1691632_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK85941.1|1691628_1692402_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK85942.1|1693386_1694337_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85943.1|1694360_1694825_-|tRNA	glutamyl-tRNA amidotransferase	tRNA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AUK85944.1|1694971_1696180_+	nitric oxide dioxygenase	NA	NA	NA	NA	NA
AUK85945.1|1696223_1696661_+	BadM/Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
AUK85946.1|1696779_1698069_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AUK85947.1|1700809_1701712_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK85948.1|1701858_1702875_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
AUK85949.1|1703053_1704088_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AUK85950.1|1704084_1704711_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AUK85951.1|1704707_1705760_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AUK85952.1|1705809_1706580_+	DNAase	NA	NA	NA	NA	NA
AUK85953.1|1706630_1707467_+	hypothetical protein	NA	NA	NA	NA	NA
AUK85954.1|1707662_1708403_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85955.1|1708477_1709221_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK85956.1|1709882_1710656_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AUK85957.1|1711793_1713083_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
AUK85958.1|1714693_1715941_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK85959.1|1715950_1717660_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AUK85960.1|1717656_1718595_-	CoA ester lyase	NA	NA	NA	NA	NA
AUK85961.1|1718591_1719875_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AUK85962.1|1719878_1720361_-	TRAP transporter small permease protein	NA	NA	NA	NA	NA
AUK85963.1|1720361_1721348_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK85964.1|1721520_1722240_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK85965.1|1722356_1723307_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP017926	Bordetella pertussis strain J230, complete genome	4106384	1829495	1901005	4106384	transposase,tRNA	Klosneuvirus(22.22%)	60	NA	NA
AUK86044.1|1829495_1830446_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86045.1|1830570_1831380_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK86046.1|1831628_1832531_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86047.1|1833804_1835022_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86048.1|1835018_1836074_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
AUK86049.1|1836078_1836981_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK86050.1|1837057_1837930_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AUK86051.1|1838060_1838429_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AUK86052.1|1838486_1839533_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AUK86053.1|1839728_1840985_+	amino acid dehydrogenase	NA	NA	NA	NA	NA
AUK86054.1|1840989_1842327_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86055.1|1842476_1843433_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK86056.1|1844890_1845256_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86057.1|1845303_1846878_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86058.1|1846930_1847875_+	peptide ABC transporter	NA	NA	NA	NA	NA
AUK88020.1|1847802_1848723_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK86059.1|1848715_1850350_+	microcin ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AUK86060.1|1850346_1851702_+	amidase	NA	NA	NA	NA	NA
AUK86061.1|1852608_1854186_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86062.1|1854189_1855464_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88021.1|1855561_1855936_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86063.1|1857651_1858785_+	general secretion pathway protein	NA	NA	NA	NA	NA
AUK86064.1|1858822_1859428_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AUK86065.1|1859424_1860243_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86066.1|1860314_1862939_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AUK86067.1|1862925_1863180_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86068.1|1863246_1863828_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86069.1|1864131_1864392_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AUK86070.1|1864557_1865181_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AUK86071.1|1865180_1865954_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AUK86072.1|1865950_1867159_-	class V aminotransferase	NA	NA	NA	NA	NA
AUK86073.1|1867184_1867658_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86074.1|1867731_1868682_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86075.1|1868780_1869683_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86076.1|1869829_1871179_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK86077.1|1871944_1872700_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86078.1|1872792_1875675_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AUK86079.1|1875997_1876423_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AUK86080.1|1876450_1877599_+	23S rRNA (adenine(2503)-C(2))-methyltransferase	NA	NA	NA	NA	NA
AUK86081.1|1877595_1878102_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK86082.1|1878117_1879404_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	NA	NA	NA	NA	NA
AUK88022.1|1879453_1880749_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK86083.1|1880750_1881389_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88023.1|1881394_1882552_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AUK86084.1|1882578_1883934_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AUK86085.1|1883937_1885008_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AUK86086.1|1885146_1885383_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
AUK86087.1|1885470_1886577_+	GTPase HflX	NA	NA	NA	NA	NA
AUK86088.1|1886542_1887847_+	HflK protein	NA	NA	NA	NA	NA
AUK86089.1|1887865_1888765_+	HflC protein	NA	NA	NA	NA	NA
AUK86090.1|1888948_1890106_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AUK86091.1|1890182_1891478_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AUK86092.1|1891591_1892131_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
AUK86093.1|1892408_1892621_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AUK86094.1|1892640_1894671_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AUK86095.1|1895356_1897639_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
AUK86096.1|1898048_1898348_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86097.1|1898632_1899046_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AUK86098.1|1899005_1899956_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86099.1|1900054_1901005_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP017926	Bordetella pertussis strain J230, complete genome	4106384	1912257	1960668	4106384	transposase	Klosneuvirus(16.67%)	47	NA	NA
AUK86110.1|1912257_1913160_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86111.1|1913156_1914431_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AUK86112.1|1914534_1915728_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AUK86113.1|1915724_1916378_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK86114.1|1916374_1917811_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AUK86115.1|1917798_1918158_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AUK86116.1|1918243_1918894_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86117.1|1919178_1920081_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86118.1|1920179_1921043_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86119.1|1921126_1922992_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK88027.1|1923249_1924770_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUK86120.1|1924857_1925508_-	NAD(P)H dehydrogenase	NA	NA	NA	NA	NA
AUK86121.1|1926456_1927752_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86122.1|1927773_1928658_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88028.1|1928756_1929632_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AUK86123.1|1929621_1929978_-	RNA signal recognition particle	NA	NA	NA	NA	NA
AUK86124.1|1930108_1931083_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK86125.1|1931212_1931392_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AUK86126.1|1931534_1932014_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86127.1|1932024_1932861_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK86128.1|1932973_1933345_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK86129.1|1933341_1933893_+	ATPase	NA	NA	NA	NA	NA
AUK86130.1|1933908_1935600_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AUK86131.1|1935648_1936329_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK86132.1|1936576_1937041_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86133.1|1937210_1938140_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88029.1|1938152_1938746_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86134.1|1938873_1940691_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AUK86135.1|1940774_1941725_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88030.1|1941823_1942303_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK86136.1|1942425_1943328_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86137.1|1943346_1943694_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AUK86138.1|1943722_1945162_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AUK86139.1|1945180_1945576_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86140.1|1945750_1946359_+	peptidase S16	NA	NA	NA	NA	NA
AUK86141.1|1946371_1947190_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AUK86142.1|1947141_1948116_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK86143.1|1948144_1949206_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86144.1|1949202_1951419_-	aldehyde oxidase	NA	NA	NA	NA	NA
AUK86145.1|1951432_1951891_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AUK86146.1|1952048_1952393_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86147.1|1952549_1953455_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88031.1|1953541_1954555_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK88032.1|1956534_1957551_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK86148.1|1957693_1959046_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AUK86149.1|1959220_1959517_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86150.1|1959663_1960668_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP017926	Bordetella pertussis strain J230, complete genome	4106384	1973101	2037422	4106384	transposase	Vibrio_phage(20.0%)	54	NA	NA
AUK86164.1|1973101_1974052_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86165.1|1974273_1975224_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86166.1|1975322_1976288_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86167.1|1976425_1977325_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK86168.1|1977852_1979679_+	DUF3604 domain-containing protein	NA	NA	NA	NA	NA
AUK86169.1|1980036_1981407_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86170.1|1981417_1982614_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK86171.1|1982686_1984006_+	acyl--CoA ligase	NA	NA	NA	NA	NA
AUK86172.1|1984002_1984878_+	esterase	NA	NA	NA	NA	NA
AUK86173.1|1984908_1986057_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK86174.1|1986074_1986389_-	2Fe-2S ferredoxin	NA	NA	NA	NA	NA
AUK86175.1|1986410_1987133_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK86176.1|1987132_1987951_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK86177.1|1987955_1988483_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AUK86178.1|1988488_1989745_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AUK86179.1|1990103_1991243_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86180.1|1991320_1992193_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK86181.1|1993111_1994014_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86182.1|1993973_1994609_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86183.1|1994968_1996291_-	isocitrate lyase	NA	NA	NA	NA	NA
AUK86184.1|1996609_1997431_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
AUK86185.1|1997366_1997708_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86186.1|1997717_1998686_-	MFS transporter	NA	NA	NA	NA	NA
AUK86187.1|1998855_1999428_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AUK86188.1|1999467_2001297_-	excinuclease ABC subunit C	NA	NA	NA	NA	NA
AUK86189.1|2001259_2002318_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
AUK86190.1|2002355_2002817_-	holo-ACP synthase	NA	NA	NA	NA	NA
AUK86191.1|2002901_2003648_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AUK86192.1|2005138_2008369_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AUK86193.1|2008435_2009767_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK86194.1|2010019_2010394_-	DNA-binding protein	NA	NA	NA	NA	NA
AUK86195.1|2010496_2011675_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86196.1|2011685_2012276_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88034.1|2012386_2013193_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AUK86197.1|2013218_2014013_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AUK86198.1|2015013_2015988_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86199.1|2016146_2016659_-	superoxide dismutase	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AUK86200.1|2016815_2017787_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86201.1|2019531_2020338_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK86202.1|2020334_2021636_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AUK86203.1|2021586_2022351_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK86204.1|2022464_2023235_-	spermidine synthase	NA	NA	NA	NA	NA
AUK86205.1|2023319_2024507_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK86206.1|2024579_2024954_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AUK86207.1|2025054_2026317_-	glycine/betaine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AUK86208.1|2026313_2027171_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK86209.1|2027343_2028345_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86210.1|2028796_2029699_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88035.1|2031310_2032462_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AUK86211.1|2032830_2033067_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AUK86212.1|2033130_2033298_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AUK86213.1|2033411_2035217_-	sulfate transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
AUK86214.1|2035470_2036373_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86215.1|2036519_2037422_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP017926	Bordetella pertussis strain J230, complete genome	4106384	2168999	2218652	4106384	transposase,tRNA	uncultured_Mediterranean_phage(16.67%)	43	NA	NA
AUK86314.1|2168999_2169950_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88044.1|2170048_2171446_-	rRNA methyltransferase	NA	NA	NA	NA	NA
AUK86315.1|2172102_2173068_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA	NA
AUK86316.1|2173057_2175919_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AUK86317.1|2175921_2176428_+	signal peptidase II	NA	NA	NA	NA	NA
AUK86318.1|2176532_2177741_+	phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AUK86319.1|2177742_2178681_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86320.1|2178842_2179316_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK86321.1|2179312_2180263_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86322.1|2180373_2180814_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86323.1|2180942_2182172_-	lytic transglycosylase	NA	NA	NA	NA	NA
AUK86324.1|2182210_2183032_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86325.1|2183085_2184237_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK86326.1|2184328_2184799_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86327.1|2187367_2189917_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AUK86328.1|2189987_2192561_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AUK86329.1|2192826_2193027_+	general stress protein CsbD	NA	NA	NA	NA	NA
AUK86330.1|2193058_2193220_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AUK86331.1|2193277_2193616_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AUK86332.1|2193764_2194667_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86333.1|2195489_2196158_+	arylesterase	NA	NA	NA	NA	NA
AUK88045.1|2196139_2198095_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AUK86334.1|2198337_2199087_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AUK86335.1|2199099_2199963_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AUK86336.1|2199966_2201382_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AUK86337.1|2201515_2202244_-	glutathione peroxidase	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AUK86338.1|2202382_2202583_-	heavy metal transporter	NA	NA	NA	NA	NA
AUK86339.1|2202758_2203157_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUK86340.1|2203180_2204581_-	23S rRNA (uracil(1939)-C(5))-methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AUK86341.1|2204699_2205452_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86342.1|2205740_2206340_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86343.1|2206444_2207224_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AUK86344.1|2207220_2208105_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AUK86345.1|2208122_2208902_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
AUK86346.1|2208886_2209645_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AUK88046.1|2209782_2210418_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK88047.1|2210685_2211702_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK86347.1|2211799_2212840_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AUK86348.1|2212974_2214267_+	guanine permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AUK86349.1|2215626_2216010_+	thiol reductase thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AUK86350.1|2216027_2216615_-	thymidylate synthase	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AUK86351.1|2216652_2217555_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86352.1|2217701_2218652_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP017926	Bordetella pertussis strain J230, complete genome	4106384	2474959	2533203	4106384	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
AUK86558.1|2474959_2475862_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86559.1|2476389_2477046_-	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
AUK86560.1|2477060_2478728_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK86561.1|2478730_2479360_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86562.1|2479571_2480666_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86563.1|2480810_2481623_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AUK86564.1|2481626_2483210_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AUK86565.1|2483380_2484511_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUK86566.1|2484697_2485774_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AUK88071.1|2485855_2486506_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUK86567.1|2486520_2487924_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AUK86568.1|2488207_2489026_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86569.1|2489022_2489727_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AUK86570.1|2490626_2491742_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK86571.1|2491775_2492150_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86572.1|2492172_2493330_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AUK86573.1|2493342_2493576_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86574.1|2494210_2497180_-	formate dehydrogenase	NA	NA	NA	NA	NA
AUK86575.1|2497194_2497404_-	formate dehydrogenase	NA	NA	NA	NA	NA
AUK86576.1|2497555_2498185_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88072.1|2498181_2500239_-	4Fe-4S ferredoxin	NA	NA	NA	NA	NA
AUK86577.1|2500295_2500976_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86578.1|2500972_2501533_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86579.1|2501539_2502637_-	MRP family ATP-binding protein	NA	NA	NA	NA	NA
AUK86580.1|2502789_2503383_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AUK86581.1|2503379_2504672_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AUK86582.1|2504685_2505228_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AUK86583.1|2505237_2506074_-	peptidase M48	NA	NA	NA	NA	NA
AUK86584.1|2506107_2507169_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AUK86585.1|2507210_2508263_-	diguanylate cyclase	NA	NA	NA	NA	NA
AUK86586.1|2508278_2508581_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86587.1|2508722_2509673_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86588.1|2509851_2511546_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK86589.1|2511542_2512628_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AUK86590.1|2512675_2513575_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK86591.1|2513585_2514230_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AUK86592.1|2515251_2518494_-	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
AUK86593.1|2518504_2519659_-	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
AUK86594.1|2519885_2520848_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
AUK86595.1|2520994_2521897_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86596.1|2522043_2522946_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86597.1|2522955_2523645_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86598.1|2523704_2524142_-	thioesterase	NA	NA	NA	NA	NA
AUK86599.1|2524187_2525081_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK86600.1|2525128_2526301_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK86601.1|2526297_2527452_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK86602.1|2527648_2527999_-	RnfH family protein	NA	NA	NA	NA	NA
AUK86603.1|2527988_2528423_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AUK86604.1|2528439_2529342_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86605.1|2529537_2530005_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AUK86606.1|2529985_2531143_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AUK86607.1|2531208_2532135_-	paraslipin	NA	NA	NA	NA	NA
AUK86608.1|2532300_2533203_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP017926	Bordetella pertussis strain J230, complete genome	4106384	2575529	2641981	4106384	transposase	uncultured_Caudovirales_phage(40.0%)	58	NA	NA
AUK86646.1|2575529_2576432_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86647.1|2576447_2576660_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86648.1|2576801_2577374_+	flagellar basal body protein FliL	NA	NA	NA	NA	NA
AUK86649.1|2577376_2578387_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AUK86650.1|2578379_2578880_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AUK86651.1|2578890_2579232_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AUK88076.1|2579300_2580035_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AUK86652.1|2580051_2580321_+	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AUK86653.1|2580343_2581132_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AUK88077.1|2581178_2582195_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK86654.1|2582411_2583854_-	chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AUK86655.1|2584032_2585652_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AUK86656.1|2585772_2587593_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AUK86657.1|2587671_2589204_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AUK86658.1|2589237_2590884_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AUK86659.1|2590953_2591976_-	flagellar rod assembly protein/muramidase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AUK86660.1|2591993_2593127_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AUK86661.1|2593129_2593819_-	flagellar basal body L-ring protein	NA	NA	NA	NA	NA
AUK86662.1|2593818_2594604_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AUK86663.1|2594647_2595412_-	flagellar biosynthesis protein FlgF	NA	NA	NA	NA	NA
AUK86664.1|2595450_2596872_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AUK86665.1|2596937_2597642_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AUK86666.1|2597689_2598109_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AUK86667.1|2598121_2598529_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AUK88078.1|2598712_2599423_+	flagella basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AUK86668.1|2599549_2599840_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AUK86669.1|2599857_2600340_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AUK86670.1|2604845_2606000_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AUK88079.1|2606305_2607322_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK86671.1|2607568_2608357_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86672.1|2608423_2609104_+	cysteine ABC transporter permease	NA	NA	NA	NA	NA
AUK86673.1|2609100_2609871_+	ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AUK86674.1|2609969_2610920_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86675.1|2610975_2611893_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AUK86676.1|2611903_2613082_-	mandelate racemase	NA	NA	NA	NA	NA
AUK86677.1|2613101_2614097_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86678.1|2615685_2616294_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUK86679.1|2616281_2617322_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK86680.1|2617339_2618302_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86681.1|2618298_2619492_-	CoA transferase	NA	NA	NA	NA	NA
AUK86682.1|2619488_2620286_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AUK86683.1|2620311_2621298_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86684.1|2621316_2623356_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUK88080.1|2623557_2624238_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK86685.1|2624251_2625163_-	CoA ester lyase	NA	NA	NA	NA	NA
AUK86686.1|2625159_2625738_-	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
AUK86687.1|2625876_2626782_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK86688.1|2626789_2630209_+	nuclease	NA	NA	NA	NA	NA
AUK86689.1|2630196_2632797_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK86690.1|2633752_2634385_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AUK86691.1|2634778_2635537_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86692.1|2635533_2636736_+	cardiolipin synthase B	NA	NA	NA	NA	NA
AUK86693.1|2636732_2636933_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86694.1|2636923_2637874_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86695.1|2638781_2639927_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86696.1|2639913_2640669_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK86697.1|2640785_2640965_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86698.1|2641030_2641981_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP017926	Bordetella pertussis strain J230, complete genome	4106384	2670144	2707508	4106384	transposase	Planktothrix_phage(33.33%)	40	NA	NA
AUK86717.1|2670144_2671047_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86718.1|2671193_2672096_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86719.1|2672188_2672728_+	peroxiredoxin	NA	NA	NA	NA	NA
AUK86720.1|2672834_2673179_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AUK86721.1|2673236_2674685_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK88083.1|2674872_2675199_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86722.1|2676835_2678014_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86723.1|2678096_2678597_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AUK86724.1|2678706_2679408_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AUK86725.1|2679419_2679884_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK86726.1|2679898_2680174_+	biotin--protein ligase	NA	NA	NA	NA	NA
AUK86727.1|2680170_2680947_+	lipoate--protein ligase	NA	NA	NA	NA	NA
AUK86728.1|2680975_2681803_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86729.1|2681928_2682399_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86730.1|2682525_2683419_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
AUK86731.1|2683466_2684648_+	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AUK86732.1|2684660_2685476_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86733.1|2685609_2686137_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88084.1|2686133_2686631_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86734.1|2686778_2687156_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86735.1|2687113_2687398_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86736.1|2687377_2688280_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88085.1|2688426_2689038_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK86737.1|2689272_2690400_+	leucine ABC transporter subunit substrate-binding protein LivK	NA	NA	NA	NA	NA
AUK86738.1|2690510_2691599_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AUK86739.1|2691651_2692503_-	glycerol-3-phosphate transporter	NA	NA	NA	NA	NA
AUK86740.1|2692522_2693404_-	glycerol-3-phosphate transporter permease	NA	NA	NA	NA	NA
AUK88086.1|2693580_2694894_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86741.1|2695104_2695938_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AUK86742.1|2695934_2696516_+	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AUK86743.1|2696869_2697820_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86744.1|2697835_2698951_+	leucine ABC transporter subunit substrate-binding protein LivK	NA	NA	NA	NA	NA
AUK86745.1|2699053_2699980_+	branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AUK86746.1|2699979_2701218_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AUK86747.1|2701214_2701982_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AUK86748.1|2701982_2702684_+	branched-chain amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AUK88087.1|2702765_2703212_-	glutamate racemase	NA	NA	NA	NA	NA
AUK86749.1|2704101_2704740_+	glutathione S-transferase	NA	NA	NA	NA	NA
AUK86750.1|2705508_2706459_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86751.1|2706557_2707508_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP017926	Bordetella pertussis strain J230, complete genome	4106384	2806635	2861152	4106384	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	49	NA	NA
AUK86832.1|2806635_2807538_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86833.1|2807914_2808520_+	fimbrial protein	NA	NA	NA	NA	NA
AUK86834.1|2808573_2809887_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AUK86835.1|2809961_2810432_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AUK86836.1|2810431_2811220_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AUK86837.1|2811230_2812883_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AUK86838.1|2812970_2813873_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88096.1|2815082_2815589_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AUK86839.1|2815585_2816350_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AUK86840.1|2816365_2816650_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AUK86841.1|2816714_2817704_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AUK86842.1|2817875_2818805_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AUK86843.1|2818776_2819463_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AUK86844.1|2819496_2820042_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AUK86845.1|2820086_2821352_+	peptidase M48	NA	NA	NA	NA	NA
AUK86846.1|2821348_2822251_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
AUK86847.1|2823432_2824377_-	peptide ABC transporter	NA	NA	NA	NA	NA
AUK86848.1|2824471_2825989_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86849.1|2826030_2827659_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK86850.1|2827766_2828648_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK86851.1|2828908_2829136_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86852.1|2831760_2832135_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AUK86853.1|2832159_2832498_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK86854.1|2832541_2834176_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AUK86855.1|2834214_2835561_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AUK88097.1|2835668_2837090_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AUK86856.1|2837159_2837744_-	nitroreductase	NA	NA	NA	NA	NA
AUK86857.1|2837846_2838797_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86858.1|2838931_2840038_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK86859.1|2840048_2841146_+	cyclic pyranopterin phosphate synthase	NA	NA	NA	NA	NA
AUK86860.1|2841290_2842496_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AUK86861.1|2842502_2843024_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AUK88098.1|2843020_2843503_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AUK86862.1|2843508_2843760_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
AUK86863.1|2843740_2844226_-	molybdenum cofactor biosynthesis protein C	NA	NA	NA	NA	NA
AUK86864.1|2844361_2847823_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86865.1|2847840_2848725_+	carboxymethylenebutenolidase	NA	NA	NA	NA	NA
AUK86866.1|2848734_2849166_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88099.1|2849412_2849916_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AUK86867.1|2849993_2851394_+	MFS transporter	NA	NA	NA	NA	NA
AUK86868.1|2851468_2852344_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88100.1|2852340_2853348_-	biotin synthase BioB	NA	NA	NA	NA	NA
AUK86869.1|2853815_2854121_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86870.1|2854211_2854802_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88101.1|2854992_2856009_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK86871.1|2856200_2858537_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AUK86872.1|2858619_2859054_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUK86873.1|2859200_2860103_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86874.1|2860201_2861152_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP017926	Bordetella pertussis strain J230, complete genome	4106384	2869177	2925962	4106384	transposase,protease	uncultured_Mediterranean_phage(28.57%)	42	NA	NA
AUK86881.1|2869177_2870080_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86882.1|2871834_2872101_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86883.1|2872808_2873147_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK86884.1|2874475_2876755_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK86885.1|2876732_2877437_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86886.1|2877699_2878302_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK86887.1|2878398_2879688_+	MFS transporter	NA	NA	NA	NA	NA
AUK86888.1|2879745_2880477_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AUK86889.1|2880473_2881277_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AUK86890.1|2881273_2882362_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK86891.1|2882358_2883288_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK86892.1|2883436_2884582_-	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86893.1|2884603_2885506_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86894.1|2885884_2889706_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUK86895.1|2889862_2890531_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86896.1|2890535_2892209_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
AUK86897.1|2892227_2893547_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AUK86898.1|2893551_2895867_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
AUK86899.1|2895922_2898091_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AUK88103.1|2898087_2902653_-	alpha-2-macroglobulin	NA	NA	NA	NA	NA
AUK86900.1|2903366_2903681_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AUK86901.1|2903908_2904154_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AUK86902.1|2904275_2904767_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	4.8e-14
AUK86903.1|2904866_2906072_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AUK86904.1|2906187_2907585_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AUK86905.1|2907701_2908280_-	superoxide dismutase	NA	NA	NA	NA	NA
AUK86906.1|2908352_2909744_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AUK86907.1|2909911_2910862_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86908.1|2911142_2911763_+	flagellar motor protein MotA	NA	NA	NA	NA	NA
AUK86909.1|2911759_2912173_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AUK86910.1|2912169_2913213_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AUK86911.1|2913268_2913457_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86912.1|2913466_2914231_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AUK86913.1|2914321_2914978_+	adenylate kinase	NA	NA	NA	NA	NA
AUK86914.1|2915069_2915828_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK86915.1|2915853_2917455_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AUK86916.1|2917655_2918660_+	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AUK86917.1|2918760_2919024_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AUK86918.1|2919141_2919918_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AUK86919.1|2920508_2921459_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86920.1|2923842_2924955_-	malate dehydrogenase	NA	NA	NA	NA	NA
AUK86921.1|2925011_2925962_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP017926	Bordetella pertussis strain J230, complete genome	4106384	2948341	2999991	4106384	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
AUK86944.1|2948341_2949205_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86945.1|2949400_2950873_-	magnesium transporter	NA	NA	NA	NA	NA
AUK86946.1|2950883_2951294_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK86947.1|2951357_2952404_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86948.1|2952510_2953389_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK86949.1|2953402_2954599_-	amidohydrolase	NA	NA	NA	NA	NA
AUK86950.1|2954660_2956352_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AUK86951.1|2956348_2957251_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86952.1|2957419_2958316_-	inositol monophosphatase	NA	NA	NA	NA	NA
AUK86953.1|2960593_2962819_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AUK86954.1|2962983_2964072_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AUK86955.1|2964028_2964682_+	DL-methionine transporter permease subunit	NA	NA	NA	NA	NA
AUK86956.1|2964729_2965527_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86957.1|2966106_2967009_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86958.1|2967089_2968238_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK86959.1|2968294_2969245_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86960.1|2969343_2969649_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AUK86961.1|2969677_2970112_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86962.1|2970113_2971358_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86963.1|2971354_2972065_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88105.1|2972079_2972991_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86964.1|2973353_2973758_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86965.1|2973754_2974213_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86966.1|2974219_2975128_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88106.1|2975124_2975991_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK86967.1|2975977_2976805_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AUK86968.1|2976815_2977943_+	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AUK86969.1|2980300_2981563_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK86970.1|2981569_2982322_+	DNA-binding protein	NA	NA	NA	NA	NA
AUK86971.1|2982373_2982559_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86972.1|2982834_2983299_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AUK86973.1|2983378_2983990_+	3-methyladenine DNA glycosylase	NA	NA	NA	NA	NA
AUK86974.1|2984134_2986243_+	hypothetical protein	NA	NA	NA	NA	NA
AUK86975.1|2986239_2987142_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86976.1|2987293_2987914_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88107.1|2988017_2988758_+	oxidoreductase	NA	NA	NA	NA	NA
AUK86977.1|2989892_2991017_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86978.1|2991062_2991431_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86979.1|2991672_2992575_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86980.1|2993658_2994201_-	hypothetical protein	NA	NA	NA	NA	NA
AUK86981.1|2994634_2995537_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK86982.1|2995533_2996442_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK86983.1|2996568_2997405_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AUK86984.1|2997917_2999027_+	porin	NA	NA	NA	NA	NA
AUK86985.1|2999088_2999991_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP017926	Bordetella pertussis strain J230, complete genome	4106384	3233554	3281172	4106384	transposase,tRNA	Erwinia_phage(10.0%)	46	NA	NA
AUK87171.1|3233554_3234505_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87172.1|3234949_3235261_-	cell division protein ZapA	NA	NA	NA	NA	NA
AUK87173.1|3235260_3235791_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87174.1|3235953_3236904_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87175.1|3237193_3237658_+	tricarboxylate transporter	NA	NA	NA	NA	NA
AUK87176.1|3237672_3239178_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87177.1|3239434_3241039_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK87178.1|3241094_3242000_+	oxidoreductase	NA	NA	NA	NA	NA
AUK87179.1|3242440_3243343_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87180.1|3243489_3244392_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87181.1|3244521_3245103_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AUK88120.1|3245527_3245833_+	RND transporter	NA	NA	NA	NA	NA
AUK87182.1|3245846_3247181_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AUK87183.1|3247202_3247742_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AUK87184.1|3247889_3248354_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AUK87185.1|3248496_3249612_-	cobalamin biosynthesis protein CobW	NA	NA	NA	NA	NA
AUK87186.1|3249888_3250392_-	transcriptional repressor	NA	NA	NA	NA	NA
AUK87187.1|3250529_3250730_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87188.1|3250720_3251443_+	ABC transporter	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AUK87189.1|3251439_3252336_+	zinc ABC transporter permease	NA	NA	NA	NA	NA
AUK87190.1|3252332_3253268_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK87191.1|3253228_3253897_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87192.1|3253887_3254856_+	nickel transporter	NA	NA	NA	NA	NA
AUK87193.1|3254904_3257046_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AUK87194.1|3257058_3258039_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AUK87195.1|3258053_3258746_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87196.1|3258772_3259684_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AUK87197.1|3259726_3260617_-	acyltransferase	NA	NA	NA	NA	NA
AUK87198.1|3260613_3261468_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AUK87199.1|3261751_3262915_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
AUK87200.1|3263025_3263277_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AUK87201.1|3263356_3264397_+	alpha-mannosyltransferase	NA	NA	NA	NA	NA
AUK87202.1|3264676_3266095_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AUK87203.1|3266165_3266501_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87204.1|3266500_3267343_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AUK87205.1|3267489_3268392_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87206.1|3268456_3269428_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87207.1|3269491_3270511_-	acetylpolyamine amidohydrolase	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AUK87208.1|3270512_3271853_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88121.1|3272163_3272844_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AUK88122.1|3272919_3274983_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
AUK87209.1|3274979_3276074_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AUK87210.1|3276088_3277279_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87211.1|3277367_3279056_-	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
AUK87212.1|3279330_3280083_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AUK87213.1|3280221_3281172_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP017926	Bordetella pertussis strain J230, complete genome	4106384	3291099	3331049	4106384	transposase,protease,integrase,tRNA	Klosneuvirus(33.33%)	28	3313896:3313914	3333784:3333802
AUK87223.1|3291099_3292050_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87224.1|3292577_3293351_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK87225.1|3293483_3294494_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK87226.1|3294645_3296301_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK87227.1|3296355_3296697_-	cupin	NA	NA	NA	NA	NA
AUK87228.1|3296710_3298150_-	amine oxidase	NA	NA	NA	NA	NA
AUK87229.1|3298282_3299098_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87230.1|3299291_3300242_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87231.1|3301635_3302577_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87232.1|3302803_3303544_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87233.1|3303629_3304532_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87234.1|3306021_3307593_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK87235.1|3307925_3309779_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87236.1|3309823_3312388_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK87237.1|3312854_3313757_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3313896:3313914	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AUK87238.1|3314540_3314837_-	hypothetical protein	NA	A0A1V0SIN4	Klosneuvirus	34.1	5.5e-05
AUK87239.1|3314906_3315818_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87240.1|3315887_3316133_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87241.1|3316361_3316619_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87242.1|3317133_3318036_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87243.1|3318267_3319479_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AUK87244.1|3319494_3322446_-	site-specific DNA-methyltransferase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AUK88125.1|3322447_3325204_-	restriction endonuclease	NA	NA	NA	NA	NA
AUK87245.1|3325714_3326761_-	cell filamentation protein Fic	NA	NA	NA	NA	NA
AUK87246.1|3327102_3328230_-|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AUK87247.1|3328509_3329601_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AUK87248.1|3329673_3330456_-|protease	CAAX protease	protease	NA	NA	NA	NA
AUK87249.1|3330452_3331049_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3333784:3333802	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 27
CP017926	Bordetella pertussis strain J230, complete genome	4106384	3380035	3433679	4106384	transposase	Staphylococcus_phage(33.33%)	47	NA	NA
AUK87287.1|3380035_3380938_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87288.1|3381342_3381987_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AUK87289.1|3382011_3382596_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AUK87290.1|3382696_3383314_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AUK87291.1|3383316_3385032_-	urease subunit alpha	NA	NA	NA	NA	NA
AUK87292.1|3385028_3385337_-	urease subunit beta	NA	NA	NA	NA	NA
AUK88128.1|3385353_3385971_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AUK87293.1|3386015_3386318_-	urease subunit gamma	NA	NA	NA	NA	NA
AUK87294.1|3386418_3387273_-	urease accessory protein	NA	NA	NA	NA	NA
AUK87295.1|3388544_3388952_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AUK87296.1|3389321_3390116_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87297.1|3390216_3391452_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AUK87298.1|3391520_3392537_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK87299.1|3392548_3393925_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87300.1|3393921_3395118_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87301.1|3395114_3396653_-	SpoVR family protein	NA	NA	NA	NA	NA
AUK87302.1|3396649_3397909_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87303.1|3399849_3400752_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87304.1|3401566_3402661_-	CoA transferase	NA	NA	NA	NA	NA
AUK87305.1|3402653_3403988_-	CoA ligase	NA	NA	NA	NA	NA
AUK87306.1|3403941_3404625_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87307.1|3404650_3405814_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK87308.1|3405810_3406812_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK87309.1|3406811_3407684_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK87310.1|3407680_3408430_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AUK87311.1|3408426_3409218_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AUK87312.1|3409214_3410354_-	ABC transporter	NA	NA	NA	NA	NA
AUK87313.1|3410629_3411415_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK87314.1|3411448_3412231_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK87315.1|3412234_3412624_+	DNA-binding protein	NA	NA	NA	NA	NA
AUK87316.1|3413763_3414627_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK87317.1|3414662_3415751_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87318.1|3415747_3416650_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87319.1|3420955_3421834_+	fatty acid desaturase	NA	NA	NA	NA	NA
AUK87320.1|3421869_3422202_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87321.1|3422180_3423701_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87322.1|3423782_3424733_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87323.1|3424729_3425197_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AUK87324.1|3425239_3426010_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK87325.1|3426030_3426831_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AUK87326.1|3426841_3428251_+	lytic transglycosylase	NA	NA	NA	NA	NA
AUK87327.1|3428345_3429131_+	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK88129.1|3429370_3430387_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK87328.1|3430494_3430887_-	osmotically inducible protein OsmC	NA	NA	NA	NA	NA
AUK87329.1|3431024_3431705_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87330.1|3431709_3432681_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK87331.1|3432776_3433679_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP017926	Bordetella pertussis strain J230, complete genome	4106384	3439882	3499132	4106384	transposase,tRNA	Acinetobacter_phage(27.27%)	50	NA	NA
AUK87335.1|3439882_3441646_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AUK87336.1|3441757_3442636_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AUK87337.1|3442748_3443564_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AUK87338.1|3443567_3443819_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AUK88130.1|3443903_3444920_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK87339.1|3445250_3445472_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88131.1|3447832_3448699_-	EamA family transporter	NA	NA	NA	NA	NA
AUK87340.1|3449247_3450456_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK87341.1|3450535_3452107_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK87342.1|3452224_3453160_-	glycosyl transferase	NA	NA	NA	NA	NA
AUK87343.1|3453348_3454293_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AUK87344.1|3454361_3454532_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87345.1|3454860_3460578_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AUK87346.1|3460583_3461711_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AUK87347.1|3461766_3462393_+	aminotransferase	NA	NA	NA	NA	NA
AUK88132.1|3462664_3463681_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK87348.1|3463776_3464487_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK88133.1|3464483_3465473_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK87349.1|3465568_3467200_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AUK87350.1|3467202_3467940_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87351.1|3468095_3468968_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AUK87352.1|3469317_3470457_+	MFS transporter	NA	NA	NA	NA	NA
AUK87353.1|3470453_3471113_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AUK87354.1|3471184_3471817_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK87355.1|3471846_3472365_+	flavin reductase	NA	NA	NA	NA	NA
AUK87356.1|3472375_3473485_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUK87357.1|3473531_3474386_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AUK87358.1|3474387_3475290_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87359.1|3476512_3477463_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87360.1|3477559_3478693_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87361.1|3478729_3478978_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87362.1|3479217_3480207_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87363.1|3480382_3481171_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AUK87364.1|3481167_3482199_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AUK87365.1|3482217_3482781_-	anthranilate/aminodeoxychorismate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AUK87366.1|3482836_3484357_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AUK87367.1|3484620_3485325_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AUK87368.1|3485332_3486061_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AUK87369.1|3486175_3486550_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AUK87370.1|3486592_3487882_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87371.1|3487878_3489048_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AUK87372.1|3489074_3489884_+	disulfide bond formation protein DsbC	NA	NA	NA	NA	NA
AUK87373.1|3489943_3490879_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AUK87374.1|3490891_3491842_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87375.1|3491940_3492903_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AUK87376.1|3492934_3493294_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AUK87377.1|3493418_3494321_+	oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AUK88134.1|3494322_3496089_-	peptidase M61	NA	NA	NA	NA	NA
AUK87378.1|3496129_3496906_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK87379.1|3498229_3499132_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP017926	Bordetella pertussis strain J230, complete genome	4106384	3514118	3572191	4106384	transposase,holin,tRNA	Catovirus(12.5%)	50	NA	NA
AUK87392.1|3514118_3515069_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87393.1|3515197_3516331_-	peptidase	NA	NA	NA	NA	NA
AUK87394.1|3516374_3517280_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK87395.1|3518979_3519900_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK87396.1|3519907_3520885_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK87397.1|3520943_3521903_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AUK87398.1|3523952_3524189_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87399.1|3524315_3525179_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AUK87400.1|3525267_3526089_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK87401.1|3526168_3526906_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK87402.1|3526902_3527895_-	2-nitropropane dioxygenase	NA	NA	NA	NA	NA
AUK88137.1|3528047_3528671_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87403.1|3528715_3529864_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK87404.1|3532235_3533138_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87405.1|3533478_3534429_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87406.1|3534575_3535478_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87407.1|3535774_3536272_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87408.1|3536314_3538090_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87409.1|3538097_3538964_+	copper resistance protein	NA	NA	NA	NA	NA
AUK87410.1|3538970_3539696_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK87411.1|3539865_3540096_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87412.1|3540133_3540355_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87413.1|3540874_3541645_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87414.1|3541958_3542549_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AUK87415.1|3542582_3543911_-	amidase	NA	NA	NA	NA	NA
AUK87416.1|3543985_3545131_-	transporter	NA	NA	NA	NA	NA
AUK87417.1|3545242_3546241_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87418.1|3546203_3546638_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AUK87419.1|3548154_3549039_+	EamA family transporter	NA	NA	NA	NA	NA
AUK87420.1|3549035_3550241_-	cardiolipin synthase B	NA	NA	NA	NA	NA
AUK87421.1|3550237_3551098_-	endonuclease	NA	NA	NA	NA	NA
AUK87422.1|3551210_3553001_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AUK88138.1|3553041_3553686_-	hypothetical protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
AUK87423.1|3553707_3554016_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AUK88139.1|3554181_3555468_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87424.1|3555594_3556854_-|holin	choline dehydrogenase	holin	A0A2I2L3D3	Orpheovirus	27.6	6.1e-13
AUK87425.1|3556901_3557852_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87426.1|3559803_3561018_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AUK87427.1|3561123_3562113_+	D-arabinose 5-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AUK87428.1|3562109_3562718_+	phenylphosphate carboxylase subunit delta	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AUK87429.1|3562730_3563360_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AUK87430.1|3563356_3563977_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AUK87431.1|3564008_3564800_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AUK87432.1|3565153_3565375_+	ribosomal subunit interface protein	NA	NA	NA	NA	NA
AUK87433.1|3565651_3566107_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AUK87434.1|3566125_3567052_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AUK87435.1|3567105_3568392_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK87436.1|3569322_3570195_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AUK87437.1|3570191_3571142_+	hypothetical protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AUK87438.1|3571288_3572191_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP017926	Bordetella pertussis strain J230, complete genome	4106384	3705410	3748581	4106384	transposase,integrase,tRNA	Streptococcus_phage(11.11%)	41	3743420:3743438	3749204:3749222
AUK87547.1|3705410_3706313_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87548.1|3706460_3707363_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87549.1|3707359_3707995_-	lysine transporter LysE	NA	NA	NA	NA	NA
AUK87550.1|3708124_3709024_+	transcriptional regulator ArgP	NA	NA	NA	NA	NA
AUK87551.1|3709119_3709611_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87552.1|3709657_3710623_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK87553.1|3711756_3712998_+	2-aminoadipate aminotransferase	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AUK87554.1|3713111_3714128_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AUK87555.1|3714162_3714639_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87556.1|3714781_3715690_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AUK87557.1|3715803_3716916_-	DNA protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AUK88149.1|3717016_3717502_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK87558.1|3717638_3718889_+	kynureninase	NA	NA	NA	NA	NA
AUK87559.1|3718990_3719503_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AUK87560.1|3719601_3720552_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87561.1|3720617_3721556_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AUK87562.1|3721578_3722205_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AUK87563.1|3722201_3722858_-	HAD family hydrolase	NA	NA	NA	NA	NA
AUK87564.1|3722854_3723457_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87565.1|3723463_3724051_-	Rossman fold protein, TIGR00730 family	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
AUK87566.1|3724231_3724801_+	bacterioferritin	NA	NA	NA	NA	NA
AUK87567.1|3724871_3726191_-	ribosomal protein S12 methylthiotransferase	NA	NA	NA	NA	NA
AUK87568.1|3726297_3726489_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AUK87569.1|3726740_3728030_+	glycine/D-amino acid oxidase	NA	NA	NA	NA	NA
AUK87570.1|3728184_3729180_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87571.1|3729264_3729939_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87572.1|3729935_3730838_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87573.1|3731047_3732289_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AUK87574.1|3732285_3733230_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AUK87575.1|3733396_3734299_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87576.1|3734258_3735188_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87577.1|3735241_3735577_-	alkylhydroperoxidase	NA	NA	NA	NA	NA
AUK87578.1|3735621_3736386_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK87579.1|3736409_3737150_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK87580.1|3737157_3738711_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
AUK87581.1|3738745_3739723_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87582.1|3739995_3740577_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AUK87583.1|3740628_3747762_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
3743420:3743438	attL	GCGACCCGCAGCGTGCCGG	NA	NA	NA	NA
AUK87584.1|3747977_3748109_-	entericidin	NA	NA	NA	NA	NA
AUK88150.1|3748140_3748266_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87585.1|3748374_3748581_-|integrase	integrase	integrase	NA	NA	NA	NA
3749204:3749222	attR	GCGACCCGCAGCGTGCCGG	NA	NA	NA	NA
>prophage 31
CP017926	Bordetella pertussis strain J230, complete genome	4106384	3754516	3790191	4106384	transposase,integrase	Burkholderia_phage(11.11%)	37	3751055:3751072	3795695:3795712
3751055:3751072	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AUK87592.1|3754516_3755419_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87593.1|3755429_3756071_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87594.1|3756237_3756480_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87595.1|3756626_3757529_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87596.1|3757564_3758032_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AUK87597.1|3758265_3758643_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87598.1|3758639_3758822_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87599.1|3758825_3759812_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AUK87600.1|3759808_3760456_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AUK87601.1|3760513_3761041_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87602.1|3761077_3762262_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AUK87603.1|3762272_3762614_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
AUK87604.1|3762606_3762726_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87605.1|3762726_3762927_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87606.1|3762923_3763913_-|integrase	integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AUK87607.1|3765399_3767370_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87608.1|3767611_3768010_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87609.1|3768018_3768942_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87610.1|3769447_3770350_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87611.1|3770580_3772272_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AUK87612.1|3772320_3772593_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AUK87613.1|3772589_3772961_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AUK87614.1|3773056_3773191_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AUK87615.1|3773596_3775006_+	chromosomal replication initiation protein DnaA	NA	NA	NA	NA	NA
AUK87616.1|3775008_3776118_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
AUK87617.1|3776212_3778666_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AUK87618.1|3778784_3779576_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87619.1|3779695_3781123_+	amidase	NA	NA	NA	NA	NA
AUK88151.1|3781161_3782133_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK87620.1|3782217_3782421_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87621.1|3782551_3783715_+	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AUK87622.1|3783802_3784648_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK87623.1|3786252_3787155_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87624.1|3787151_3787496_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87625.1|3787709_3788084_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87626.1|3788158_3789217_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK87627.1|3789240_3790191_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3795695:3795712	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
>prophage 32
CP017926	Bordetella pertussis strain J230, complete genome	4106384	4028555	4081939	4106384	transposase	Planktothrix_phage(40.0%)	45	NA	NA
AUK87844.1|4028555_4029506_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87845.1|4029675_4030902_+	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase	NA	NA	NA	NA	NA
AUK87846.1|4031101_4031968_+	AAA family ATPase	NA	NA	NA	NA	NA
AUK87847.1|4031960_4032923_+	NUDIX hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AUK87848.1|4033023_4033974_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87849.1|4034120_4035023_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87850.1|4035169_4036072_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87851.1|4036068_4037562_-	RND transporter	NA	NA	NA	NA	NA
AUK87852.1|4037558_4040666_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AUK87853.1|4040662_4043731_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AUK87854.1|4043727_4044978_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK88167.1|4045158_4045911_-	cell division protein ZapD	NA	NA	NA	NA	NA
AUK88168.1|4045952_4046597_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AUK87855.1|4046605_4047445_-	prepilin peptidase	NA	NA	NA	NA	NA
AUK87856.1|4047685_4048429_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87857.1|4048511_4048859_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUK87858.1|4048956_4049799_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AUK87859.1|4049843_4050731_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AUK87860.1|4050757_4050946_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AUK87861.1|4051043_4052501_+	MFS transporter	NA	NA	NA	NA	NA
AUK87862.1|4052487_4054014_+	glycerol kinase	NA	NA	NA	NA	NA
AUK87863.1|4054032_4054500_-	hypothetical protein	NA	NA	NA	NA	NA
AUK87864.1|4054499_4055522_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK87865.1|4055642_4056383_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AUK87866.1|4056437_4057538_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK87867.1|4057539_4058730_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK87868.1|4058849_4059866_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AUK87869.1|4060184_4060856_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AUK87870.1|4060852_4061761_+	permease	NA	NA	NA	NA	NA
AUK87871.1|4061972_4062620_+	chemotaxis protein CheD	NA	NA	NA	NA	NA
AUK87872.1|4066480_4067548_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AUK87873.1|4067558_4068368_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK87874.1|4068457_4069231_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK87875.1|4069461_4070364_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK87876.1|4070375_4071275_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87877.1|4071264_4072419_+	acyl-CoA transferase	NA	NA	NA	NA	NA
AUK87878.1|4072458_4073871_+	hypothetical protein	NA	NA	NA	NA	NA
AUK87879.1|4073893_4074862_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK87880.1|4074863_4075688_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK87881.1|4075684_4076446_+	nitrobenzoate reductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
AUK87882.1|4076526_4077213_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK87883.1|4077410_4078394_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AUK87884.1|4078390_4079170_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK88169.1|4079257_4080490_+	CoA transferase	NA	NA	NA	NA	NA
AUK87885.1|4081036_4081939_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
