The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP017927	Bordetella pertussis strain J295, complete genome	4105292	0	64055	4105292	transposase,tRNA,protease	Natrialba_phage(12.5%)	57	NA	NA
AUK88171.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AUK88172.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
AUK88173.1|2605_3403_+	chromosome partitioning protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AUK88174.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK88175.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AUK88176.1|5124_5910_+	L-asparaginase	NA	NA	NA	NA	NA
AUK88177.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88178.1|6721_7912_+	translation elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AUK88179.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AUK88180.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AUK88181.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AUK88182.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AUK88183.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AUK88184.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AUK88185.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AUK88186.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AUK91540.1|20126_20531_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88187.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88188.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AUK91541.1|26575_27286_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88189.1|27282_28185_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88190.1|28314_28614_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88191.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88192.1|29141_30359_-	thiolase	NA	NA	NA	NA	NA
AUK88193.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AUK88194.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91542.1|32214_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK88195.1|33048_34470_+	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
AUK88196.1|34673_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88197.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AUK88198.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AUK88199.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AUK88200.1|40060_40600_+	D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AUK88201.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK88202.1|41318_42212_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88203.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUK88204.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AUK88205.1|43346_43526_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88206.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91543.1|45224_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88207.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUK88208.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88209.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AUK88210.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AUK88211.1|50189_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88212.1|51134_52391_+	muropeptide transporter AmpG	NA	NA	NA	NA	NA
AUK88213.1|53622_54357_-	glutamate racemase	NA	NA	NA	NA	NA
AUK88214.1|54362_54953_-	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AUK88215.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK88216.1|55663_56425_-	glutamate ABC transporter permease	NA	NA	NA	NA	NA
AUK88217.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK88218.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88219.1|59248_60475_-	serine kinase HipA	NA	NA	NA	NA	NA
AUK88220.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK91544.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88221.1|62442_63417_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88222.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
>prophage 2
CP017927	Bordetella pertussis strain J295, complete genome	4105292	69085	122073	4105292	transposase,tRNA	Planktothrix_phage(20.0%)	53	NA	NA
AUK88228.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88229.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AUK88230.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AUK88231.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK88232.1|74357_74939_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AUK88233.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88234.1|75280_76123_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88235.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AUK88236.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91545.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88237.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AUK88238.1|82822_83527_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AUK88239.1|83523_84630_-	glycosyl transferase	NA	NA	NA	NA	NA
AUK88240.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AUK88241.1|85481_86669_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AUK88242.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AUK88243.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AUK88244.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AUK88245.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUK88246.1|90793_91846_-	oxidoreductase	NA	NA	NA	NA	NA
AUK88247.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AUK88248.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AUK88249.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88250.1|94468_95272_-	pantothenate kinase	NA	NA	NA	NA	NA
AUK88251.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AUK88252.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK88253.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AUK88254.1|98332_98800_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88255.1|98889_99111_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88256.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88257.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK91546.1|100607_101786_+	peptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	5.8e-66
AUK88258.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUK88259.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AUK88260.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AUK88261.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AUK88262.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AUK88263.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AUK88264.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AUK88265.1|107427_108330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88266.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK88267.1|110552_111182_-	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
AUK88268.1|111243_111927_-	cell division protein	NA	NA	NA	NA	NA
AUK88269.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK91547.1|113906_114254_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88270.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91548.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK88271.1|116036_116837_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK88272.1|116833_117709_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK88273.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK88274.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AUK88275.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AUK88276.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP017927	Bordetella pertussis strain J295, complete genome	4105292	164893	301467	4105292	transposase,tRNA,protease	Klosneuvirus(10.53%)	118	NA	NA
AUK88313.1|164893_165844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88314.1|167287_168190_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88315.1|168167_168797_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88316.1|169079_170510_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
AUK88317.1|170543_171173_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AUK88318.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AUK88319.1|172865_173537_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91550.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
AUK88320.1|174349_175252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88321.1|176367_176895_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88322.1|176986_177802_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88323.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
AUK88324.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AUK88325.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88326.1|181336_182422_+	ATP-binding protein	NA	NA	NA	NA	NA
AUK88327.1|182425_184330_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88328.1|184326_187965_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88329.1|188025_188589_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AUK88330.1|188596_189019_-	glyoxalase	NA	NA	NA	NA	NA
AUK88331.1|189046_189466_-	glyoxalase	NA	NA	NA	NA	NA
AUK88332.1|189494_189842_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK91551.1|190115_190565_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88333.1|190719_192990_+	lysine decarboxylase	NA	NA	NA	NA	NA
AUK88334.1|193065_194271_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88335.1|194417_195320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88336.1|195422_196058_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
AUK88337.1|196054_196948_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AUK88338.1|197342_198443_+	glycine cleavage system protein T	NA	NA	NA	NA	NA
AUK88339.1|198524_198899_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AUK88340.1|198958_201823_+	glycine dehydrogenase (aminomethyl-transferring)	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AUK88341.1|201967_202708_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88342.1|202777_203989_+	formyl-CoA transferase	NA	NA	NA	NA	NA
AUK88343.1|204017_204986_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88344.1|205647_206550_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88345.1|206706_207030_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AUK91552.1|207134_208175_-	cyclase	NA	NA	NA	NA	NA
AUK88346.1|208180_208960_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AUK88347.1|209005_209302_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88348.1|209327_209603_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AUK88349.1|209659_210304_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK88350.1|210303_210990_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK91553.1|211188_211971_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88351.1|212021_212747_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK88352.1|212778_214128_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK88353.1|214239_215172_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK88354.1|215629_218425_-	peptidase S8	NA	NA	NA	NA	NA
AUK88355.1|219018_221862_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AUK88356.1|222032_222752_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AUK88357.1|222790_223339_-	GNAT family N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AUK88358.1|223493_224393_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AUK88359.1|224417_225368_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88360.1|225586_226282_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88361.1|226298_227711_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AUK88362.1|227823_229254_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AUK88363.1|229295_231209_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
AUK88364.1|231527_232094_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AUK88365.1|232184_233186_+	restriction endonuclease	NA	NA	NA	NA	NA
AUK88366.1|233300_234251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88367.1|234337_235288_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88368.1|235284_236235_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88369.1|236333_237131_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK88370.1|238080_238491_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AUK88371.1|238740_239496_+	gamma-hydroxybutyrate dehydrogenase	NA	D2K0C8	Staphylococcus_phage	55.0	4.6e-32
AUK88372.1|239512_240256_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88373.1|240299_241343_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK91554.1|242356_243616_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88374.1|245026_245983_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88375.1|246001_246493_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AUK88376.1|246489_247845_-	poly(A) polymerase	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AUK88377.1|247845_248544_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88378.1|248540_249242_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AUK88379.1|249494_250544_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AUK88380.1|250649_251591_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AUK88381.1|251587_253477_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AUK91555.1|253581_254202_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88382.1|254344_255730_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
AUK88383.1|255660_256197_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AUK88384.1|256348_257740_+	fumarate hydratase, class II	NA	NA	NA	NA	NA
AUK88385.1|257756_258737_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88386.1|258872_259856_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK88387.1|259920_260820_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88388.1|260926_262681_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK88389.1|262688_263813_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK88390.1|263826_264807_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK88391.1|265537_266488_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88392.1|266502_266874_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88393.1|267047_267593_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88394.1|267718_269296_+	cytochrome d terminal oxidase subunit 1	NA	NA	NA	NA	NA
AUK88395.1|269311_270466_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AUK88396.1|270479_270605_+	cyd operon protein YbgT	NA	NA	NA	NA	NA
AUK88397.1|270601_272353_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AUK88398.1|272349_274029_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AUK88399.1|274091_274640_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
AUK88400.1|275782_276061_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88401.1|277104_278055_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88402.1|278332_278494_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AUK88403.1|278501_278642_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88404.1|279160_279610_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AUK88405.1|279619_280231_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK88406.1|280389_281238_-	cytochrome c1	NA	NA	NA	NA	NA
AUK88407.1|281263_282646_-	cytochrome b	NA	NA	NA	NA	NA
AUK88408.1|282710_283352_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AUK88409.1|283491_283950_+	large-conductance mechanosensitive channel protein	NA	NA	NA	NA	NA
AUK88410.1|283974_284751_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AUK91556.1|284804_285941_+	2-alkenal reductase	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AUK88411.1|285937_286888_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88412.1|286986_287613_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88413.1|287635_288562_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AUK88414.1|288570_290157_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK88415.1|290153_291158_-	acetylesterase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AUK88416.1|291357_292218_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK88417.1|292249_293251_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88418.1|293321_294131_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK88419.1|294208_296068_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AUK88420.1|296196_297399_-	MFS transporter	NA	NA	NA	NA	NA
AUK88421.1|297512_298394_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88422.1|299896_300457_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AUK88423.1|300516_301467_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP017927	Bordetella pertussis strain J295, complete genome	4105292	390821	448330	4105292	transposase	Orpheovirus(14.29%)	50	NA	NA
AUK88510.1|390821_391772_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88511.1|391914_392826_+	reductase	NA	NA	NA	NA	NA
AUK88512.1|392822_393071_+	NrdH-redoxin	NA	NA	NA	NA	NA
AUK88513.1|393067_394273_+	CoA transferase	NA	NA	NA	NA	NA
AUK88514.1|394345_395341_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88515.1|395363_396584_-	acyl-CoA transferase	NA	NA	NA	NA	NA
AUK88516.1|396580_397225_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88517.1|397221_397614_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88518.1|397502_398855_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88519.1|398955_399765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91562.1|400069_401023_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
AUK88520.1|401121_402105_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88521.1|402781_403552_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK88522.1|403548_404727_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK88523.1|404894_406601_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AUK88524.1|406597_407494_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88525.1|407534_409124_-	sulfurtransferase	NA	NA	NA	NA	NA
AUK88526.1|409173_410166_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88527.1|410234_410834_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88528.1|411294_412275_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88529.1|412350_413253_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88530.1|413389_414304_+	EamA family transporter	NA	NA	NA	NA	NA
AUK88531.1|414300_414960_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88532.1|415049_415973_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AUK88533.1|415978_416434_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88534.1|416430_417534_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88535.1|417721_419341_-	dolichyl-phosphate-mannose--protein mannosyltransferase	NA	NA	NA	NA	NA
AUK88536.1|419337_420396_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AUK88537.1|420525_421020_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK88538.1|421112_422090_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88539.1|422285_423491_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AUK88540.1|423487_424999_+	TRAP ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK91563.1|425014_426328_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK88541.1|426518_426698_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88542.1|427107_427842_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AUK88543.1|430334_431237_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88544.1|431368_431767_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AUK88545.1|432177_432648_-	universal stress protein	NA	NA	NA	NA	NA
AUK88546.1|432736_433081_-	TIGR01244 family protein	NA	NA	NA	NA	NA
AUK88547.1|433180_434581_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88548.1|436369_436888_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AUK88549.1|436998_437754_+	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AUK88550.1|437949_439182_+	CoA transferase	NA	NA	NA	NA	NA
AUK88551.1|439174_439960_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK88552.1|440026_440998_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK88553.1|441008_441986_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88554.1|442111_443284_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK88555.1|443310_444339_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK88556.1|444404_445598_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK88557.1|447379_448330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP017927	Bordetella pertussis strain J295, complete genome	4105292	635707	735820	4105292	transposase,tRNA,tail,terminase	uncultured_Caudovirales_phage(13.79%)	107	NA	NA
AUK88721.1|635707_636658_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88722.1|636756_637557_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88723.1|637618_638002_+	thiol reductase thioredoxin	NA	NA	NA	NA	NA
AUK88724.1|638013_639447_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AUK88725.1|639653_639983_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88726.1|639985_640735_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88727.1|640917_641838_+	branched chain amino acid aminotransferase	NA	NA	NA	NA	NA
AUK88728.1|641884_642097_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88729.1|642119_642542_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AUK88730.1|642558_643659_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK88731.1|643755_645273_-	peptidase	NA	NA	NA	NA	NA
AUK88732.1|645348_646188_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AUK91572.1|646209_647082_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88733.1|647172_648267_-	porin	NA	NA	NA	NA	NA
AUK88734.1|648560_649463_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91573.1|649585_650527_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88735.1|650610_650970_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88736.1|651351_652389_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88737.1|652705_654046_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
AUK88738.1|654055_654508_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88739.1|654613_655786_+	monooxygenase	NA	NA	NA	NA	NA
AUK88740.1|655851_656877_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AUK88741.1|656917_657157_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK88742.1|657226_658816_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AUK88743.1|658815_659364_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AUK88744.1|659444_660017_+	Holliday junction DNA helicase RuvA	NA	NA	NA	NA	NA
AUK88745.1|660035_660947_-	NAD-dependent dehydratase	NA	NA	NA	NA	NA
AUK88746.1|661020_661989_-	serine dehydratase	NA	NA	NA	NA	NA
AUK88747.1|662111_663185_+	Holliday junction DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AUK88748.1|663189_665010_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AUK88749.1|666124_666460_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88750.1|666593_667244_+	carbonate dehydratase	NA	NA	NA	NA	NA
AUK88751.1|667265_668684_-	amidase	NA	NA	NA	NA	NA
AUK88752.1|668753_669509_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91574.1|669477_670236_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK88753.1|670246_671128_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK88754.1|671144_671852_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AUK88755.1|671854_672613_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AUK88756.1|672822_674565_+	sulfite reductase	NA	NA	NA	NA	NA
AUK88757.1|674557_675082_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88758.1|675121_675916_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK88759.1|676083_677157_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88760.1|677255_678206_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88761.1|678457_678664_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91575.1|678735_679347_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AUK88762.1|679826_680147_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88763.1|680139_680838_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88764.1|680852_681074_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88765.1|681091_682042_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88766.1|682682_683168_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
AUK88767.1|683154_684432_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AUK88768.1|684434_685853_+	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AUK88769.1|685824_686937_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	49.7	2.1e-102
AUK88770.1|686942_687185_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AUK88771.1|687307_687910_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AUK88772.1|688338_689289_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88773.1|689963_690215_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88774.1|690277_690760_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AUK88775.1|690761_690962_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88776.1|690961_691357_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AUK88777.1|691353_691752_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AUK88778.1|691748_692171_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88779.1|692178_692679_+	hypothetical protein	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AUK88780.1|692933_693452_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AUK88781.1|693461_693791_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AUK88782.1|693808_694099_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AUK88783.1|694124_696737_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AUK88784.1|696746_697106_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88785.1|697173_697707_+	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AUK88786.1|697703_698093_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AUK88787.1|698085_702042_+	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AUK88788.1|702046_702463_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88789.1|702681_702945_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AUK88790.1|702944_703757_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88791.1|703761_704004_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88792.1|703982_704534_+	lysozyme	NA	NA	NA	NA	NA
AUK88793.1|704533_705049_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88794.1|705045_705327_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88795.1|705326_705548_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88796.1|705876_706548_-	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AUK88797.1|706475_706844_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88798.1|706903_707590_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AUK88799.1|707570_708143_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AUK88800.1|708208_709939_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AUK88801.1|709991_710420_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK88802.1|710422_711103_+	protein TolQ	NA	NA	NA	NA	NA
AUK88803.1|711102_711561_+	protein TolR	NA	NA	NA	NA	NA
AUK88804.1|711597_712572_+	protein TolA	NA	NA	NA	NA	NA
AUK88805.1|712588_713905_+	Tol-Pal system beta propeller repeat protein TolB	NA	NA	NA	NA	NA
AUK88806.1|713936_714434_+	peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
AUK88807.1|714520_715210_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AUK88808.1|715209_716259_+	iron-siderophore ABC transporter permease	NA	NA	NA	NA	NA
AUK88809.1|716255_717050_+	iron ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AUK88810.1|717218_717569_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88811.1|717544_718102_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88812.1|719231_720182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88813.1|722319_723549_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88814.1|723551_724994_-	pyruvate kinase	NA	NA	NA	NA	NA
AUK88815.1|725098_726244_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AUK88816.1|726275_727073_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase	NA	NA	NA	NA	NA
AUK88817.1|727097_728657_-	molecular chaperone SurA	NA	NA	NA	NA	NA
AUK88818.1|728653_731020_-	LPS biosynthesis protein	NA	NA	NA	NA	NA
AUK91576.1|731198_732239_+	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AUK88819.1|732238_732931_+	mannose-1-phosphate guanylyltransferase	NA	NA	NA	NA	NA
AUK88820.1|733074_733776_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88821.1|733760_734138_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AUK88822.1|734869_735820_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP017927	Bordetella pertussis strain J295, complete genome	4105292	747107	820221	4105292	transposase	Streptococcus_phage(16.67%)	59	NA	NA
AUK88833.1|747107_748058_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88834.1|748712_749810_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AUK88835.1|749843_751109_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AUK88836.1|751314_752217_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88837.1|752258_752414_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88838.1|752460_753051_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AUK91577.1|753066_755511_-	ligand-gated channel	NA	NA	NA	NA	NA
AUK88839.1|755630_756602_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88840.1|756733_757258_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AUK88841.1|757217_758168_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88842.1|758389_760585_-	DNA methylase	NA	NA	NA	NA	NA
AUK91578.1|760657_761005_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK88843.1|761187_762138_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88844.1|762253_762676_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK88845.1|762759_763554_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK88846.1|763719_764856_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AUK88847.1|764926_766060_-	GTPase ObgE	NA	NA	NA	NA	NA
AUK88848.1|766209_766470_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AUK88849.1|766503_766815_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AUK88850.1|767239_768388_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AUK88851.1|768502_769468_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AUK88852.1|769736_770603_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88853.1|770733_772782_+	hydantoinase	NA	NA	NA	NA	NA
AUK88854.1|772799_774797_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUK88855.1|774831_776169_+	amino acid deaminase	NA	NA	NA	NA	NA
AUK88856.1|778339_779821_+	succinate-semialdehyde dehydrogenase (NADP(+))	NA	NA	NA	NA	NA
AUK88857.1|779836_780394_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AUK91579.1|780506_780686_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88858.1|780770_785993_+	hemolysin	NA	NA	NA	NA	NA
AUK88859.1|786070_788209_+	peptidase C39	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AUK88860.1|788205_789528_+	hemolysin D	NA	NA	NA	NA	NA
AUK88861.1|789529_790954_+	CyaE	NA	NA	NA	NA	NA
AUK88862.1|791044_791953_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88863.1|792017_792932_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK88864.1|793338_793572_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88865.1|793769_794453_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK88866.1|794484_795213_+	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
AUK88867.1|795242_796103_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUK88868.1|796110_796677_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88869.1|796765_797722_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK88870.1|797766_798519_-	3-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK88871.1|798515_800261_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AUK88872.1|800345_801080_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88873.1|801396_802419_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK91580.1|802434_803070_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88874.1|803301_804309_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AUK88875.1|804349_805882_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUK88876.1|805878_806997_-	deacylase	NA	NA	NA	NA	NA
AUK88877.1|806993_807776_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK88878.1|807787_808651_-	ABC transporter	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AUK91581.1|808669_809767_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88879.1|809835_810762_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88880.1|810796_812491_-	acetolactate synthase	NA	NA	NA	NA	NA
AUK91582.1|812690_813584_-	mechanosensitive ion channel protein	NA	NA	NA	NA	NA
AUK88881.1|813731_814682_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88882.1|814780_815437_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88883.1|815584_818293_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AUK88884.1|818302_819322_+	fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AUK88885.1|819318_820221_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP017927	Bordetella pertussis strain J295, complete genome	4105292	858712	912843	4105292	holin,transposase	Vibrio_phage(25.0%)	44	NA	NA
AUK88918.1|858712_860671_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AUK88919.1|860753_861704_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88920.1|861924_862593_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK88921.1|862716_863823_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK88922.1|863835_866949_+	multidrug efflux protein	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AUK88923.1|866945_868439_+	RND transporter	NA	NA	NA	NA	NA
AUK88924.1|868453_869125_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91586.1|869168_869621_-	azurin	NA	NA	NA	NA	NA
AUK88925.1|869803_870451_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91587.1|870554_872603_+	hydantoinase	NA	NA	NA	NA	NA
AUK88926.1|872599_874612_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUK88927.1|874637_875972_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88928.1|876080_877073_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88929.1|877139_879224_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AUK88930.1|879248_880220_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88931.1|880348_881350_-	peptidase M14	NA	NA	NA	NA	NA
AUK88932.1|881383_882535_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK88933.1|882738_883629_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88934.1|883706_884531_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK91588.1|884727_885744_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK88935.1|885940_886924_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK88936.1|886982_888110_-	argininosuccinate lyase	NA	NA	NA	NA	NA
AUK88937.1|888100_888475_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88938.1|888522_889911_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88939.1|889941_890931_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88940.1|891041_892274_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AUK88941.1|892555_893356_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK88942.1|893378_895610_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AUK88943.1|896397_896844_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AUK88944.1|896865_897612_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AUK88945.1|897755_898733_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AUK88946.1|899366_899978_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AUK88947.1|899971_901189_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AUK88948.1|901329_902280_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88949.1|902276_902996_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88950.1|903116_905276_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AUK88951.1|905366_905636_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
AUK91589.1|905929_906457_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88952.1|906475_907255_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AUK88953.1|907422_908439_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AUK88954.1|908511_909003_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AUK88955.1|909013_910729_-	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AUK88956.1|911199_911811_+	hypothetical protein	NA	NA	NA	NA	NA
AUK88957.1|911892_912843_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP017927	Bordetella pertussis strain J295, complete genome	4105292	937342	999491	4105292	transposase	Bacillus_virus(15.38%)	57	NA	NA
AUK88979.1|937342_938245_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88980.1|938241_938625_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK88981.1|938679_940494_-	metal ABC transporter permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AUK91590.1|940643_941471_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AUK88982.1|941516_942497_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK88983.1|942493_942706_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88984.1|942702_943884_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88985.1|944047_944782_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AUK88986.1|944783_947396_-	penicillin-binding protein	NA	NA	NA	NA	NA
AUK88987.1|947531_949445_-	S9 family peptidase	NA	NA	NA	NA	NA
AUK88988.1|950060_950471_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
AUK88989.1|950568_951654_+	DNA polymerase IV	NA	NA	NA	NA	NA
AUK88990.1|951752_952703_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88991.1|952699_953674_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88992.1|953819_954710_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.3e-05
AUK91591.1|954986_955379_-	hypothetical protein	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AUK88993.1|955508_956459_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK88994.1|956488_956671_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AUK88995.1|957443_958625_-	MFS transporter	NA	NA	NA	NA	NA
AUK88996.1|958840_959518_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AUK88997.1|959514_960240_-	bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase	NA	NA	NA	NA	NA
AUK88998.1|960365_960947_-	hypothetical protein	NA	NA	NA	NA	NA
AUK88999.1|961317_963999_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AUK91592.1|964001_965132_+	phosphoserine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
AUK89000.1|965124_966210_+	chorismate mutase	NA	NA	NA	NA	NA
AUK89001.1|966296_967196_+	prephenate dehydrogenase	NA	NA	NA	NA	NA
AUK89002.1|967192_968521_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AUK89003.1|968535_969207_+	cytidylate kinase	NA	NA	NA	NA	NA
AUK89004.1|969394_971110_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AUK89005.1|971111_971471_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AUK89006.1|971662_971977_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89007.1|972019_973240_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AUK89008.1|973236_974178_+	hypothetical protein	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AUK89009.1|974174_975164_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AUK91593.1|975453_975783_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89010.1|975881_976832_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89011.1|976912_977824_+	cysteine synthase B	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AUK89012.1|977884_979030_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AUK89013.1|979049_979964_+	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AUK89014.1|980035_980785_+	electron transporter RnfB	NA	NA	NA	NA	NA
AUK89015.1|980784_981714_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AUK89016.1|981957_983784_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK89017.1|983866_984508_+	peroxidase	NA	NA	NA	NA	NA
AUK89018.1|984697_985732_+	sulfate transporter subunit	NA	NA	NA	NA	NA
AUK89019.1|985747_985951_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89020.1|985972_986647_+	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA	NA
AUK89021.1|986761_987544_+	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
AUK89022.1|987568_988633_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AUK91594.1|989430_990339_+	sulfate adenylyltransferase small subunit	NA	NA	NA	NA	NA
AUK89023.1|991826_993101_+	radical SAM protein	NA	NA	NA	NA	NA
AUK89024.1|993254_993635_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89025.1|993642_994515_-	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AUK89026.1|994820_995201_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AUK89027.1|995450_996137_+	coenzyme A pyrophosphatase	NA	NA	NA	NA	NA
AUK89028.1|996232_997183_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89029.1|997287_998337_+	aldo/keto reductase	NA	NA	NA	NA	NA
AUK91595.1|998474_999491_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP017927	Bordetella pertussis strain J295, complete genome	4105292	1023295	1081380	4105292	transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
AUK89044.1|1023295_1024198_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89045.1|1024344_1025085_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AUK89046.1|1025279_1027316_+	transketolase	NA	NA	NA	NA	NA
AUK89047.1|1027333_1028344_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AUK89048.1|1028461_1029655_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AUK89049.1|1029684_1030458_-	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK89050.1|1030454_1031645_-	acetate kinase	NA	NA	NA	NA	NA
AUK89051.1|1031670_1032609_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AUK91597.1|1032605_1034954_-	3-hydroxyalkanoate synthetase	NA	NA	NA	NA	NA
AUK89052.1|1035108_1035750_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK89053.1|1037263_1037812_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AUK89054.1|1037830_1038316_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK89055.1|1038493_1039432_+	cytochrome C biogenesis protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AUK89056.1|1039434_1039752_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89057.1|1039797_1040742_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89058.1|1042422_1043073_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AUK89059.1|1043126_1043462_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91598.1|1043476_1044319_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AUK89060.1|1044335_1044617_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89061.1|1044690_1044954_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AUK89062.1|1045197_1046148_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89063.1|1046446_1047184_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AUK89064.1|1047619_1047943_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AUK89065.1|1047977_1048538_+	transcriptional regulator FlhC	NA	NA	NA	NA	NA
AUK89066.1|1048658_1049534_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AUK89067.1|1049546_1050494_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
AUK89068.1|1050595_1050889_+	two-component system response regulator	NA	NA	NA	NA	NA
AUK89069.1|1050915_1052973_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AUK89070.1|1052987_1053488_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AUK89071.1|1053561_1055268_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AUK89072.1|1056131_1057184_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AUK89073.1|1057236_1057626_+	two-component system response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AUK89074.1|1057634_1058267_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AUK91599.1|1058366_1059383_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK91600.1|1060213_1061221_+	aldo/keto reductase	NA	NA	NA	NA	NA
AUK89075.1|1061217_1062861_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AUK89076.1|1062857_1063745_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AUK89077.1|1063885_1064359_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
AUK89078.1|1064348_1065371_-	phosphate starvation-inducible protein PhoH	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AUK89079.1|1065367_1066795_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AUK91601.1|1067732_1068749_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK89080.1|1069081_1070017_-	protein-export membrane protein SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AUK89081.1|1070066_1071947_-	protein-export membrane protein SecD	NA	NA	NA	NA	NA
AUK89082.1|1072013_1072358_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AUK89083.1|1072502_1073639_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AUK89084.1|1073635_1074709_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AUK89085.1|1074866_1076303_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AUK91602.1|1076393_1077035_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AUK91603.1|1077370_1078387_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK91604.1|1080429_1081380_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP017927	Bordetella pertussis strain J295, complete genome	4105292	1156496	1218667	4105292	transposase,tRNA	Erysipelothrix_phage(33.33%)	52	NA	NA
AUK89139.1|1156496_1157399_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89140.1|1157545_1158169_-	fimbrial protein	NA	NA	NA	NA	NA
AUK89141.1|1158342_1160625_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AUK89142.1|1160779_1163476_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AUK89143.1|1163601_1164090_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89144.1|1164125_1165988_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
AUK89145.1|1165966_1166176_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89146.1|1166500_1169371_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AUK89147.1|1169416_1170631_+	dihydrolipoamide succinyltransferase	NA	NA	NA	NA	NA
AUK89148.1|1170860_1172288_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AUK89149.1|1172385_1173477_+	cell division protein ZapE	NA	NA	NA	NA	NA
AUK89150.1|1173489_1174248_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK89151.1|1174335_1175238_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89152.1|1175234_1176185_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89153.1|1176314_1177298_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK89154.1|1177352_1178075_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK89155.1|1179553_1180909_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AUK89156.1|1180989_1183365_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
AUK89157.1|1183529_1185605_+	helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AUK91610.1|1185666_1186461_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AUK89158.1|1186568_1187531_+	RNA pseudouridine synthase	NA	NA	NA	NA	NA
AUK89159.1|1187518_1188274_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89160.1|1188381_1190019_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AUK89161.1|1190086_1190824_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK89162.1|1190926_1191502_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AUK89163.1|1191674_1192211_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91611.1|1192243_1192558_+	periplasmic lipoprotein involved in iron transport	NA	NA	NA	NA	NA
AUK89164.1|1192573_1193419_+	FTR1 family iron permease	NA	NA	NA	NA	NA
AUK89165.1|1193457_1194837_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89166.1|1194914_1195796_+	phenazine biosynthesis protein PhzC/PhzF	NA	NA	NA	NA	NA
AUK89167.1|1195942_1196845_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89168.1|1196841_1197252_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUK89169.1|1197359_1198214_-	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AUK89170.1|1198206_1199169_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89171.1|1199214_1200339_-	racemase	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AUK89172.1|1200444_1201323_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89173.1|1201447_1202227_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK89174.1|1202380_1203802_+	MFS transporter	NA	NA	NA	NA	NA
AUK89175.1|1204236_1205934_+	sodium:proline symporter	NA	NA	NA	NA	NA
AUK89176.1|1205962_1206085_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91612.1|1206160_1207102_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
AUK89177.1|1207428_1208175_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89178.1|1208182_1209109_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89179.1|1209230_1210148_+	oxidoreductase	NA	NA	NA	NA	NA
AUK89180.1|1210187_1211141_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK89181.1|1211165_1211744_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89182.1|1213417_1214026_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89183.1|1214103_1214457_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91613.1|1214540_1215473_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AUK89184.1|1215780_1216683_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89185.1|1216769_1217720_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89186.1|1217716_1218667_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP017927	Bordetella pertussis strain J295, complete genome	4105292	1291630	1328396	4105292	transposase	Salmonella_phage(50.0%)	35	NA	NA
AUK89238.1|1291630_1292581_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89239.1|1292560_1293142_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89240.1|1293202_1294930_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AUK89241.1|1295041_1296400_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AUK89242.1|1296692_1297643_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89243.1|1297683_1298754_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89244.1|1298776_1299655_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89245.1|1299826_1300798_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK89246.1|1300960_1301803_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89247.1|1301964_1302645_+	anti-sigma factor	NA	NA	NA	NA	NA
AUK89248.1|1302638_1303808_+	amine oxidase	NA	NA	NA	NA	NA
AUK89249.1|1303804_1304836_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AUK89250.1|1304903_1306121_+	MFS transporter	NA	NA	NA	NA	NA
AUK89251.1|1306155_1307688_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89252.1|1307768_1308392_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK89253.1|1308422_1309034_+	RhtB family transporter	NA	NA	NA	NA	NA
AUK89254.1|1309069_1309540_+	histidine kinase	NA	NA	NA	NA	NA
AUK89255.1|1309971_1310976_+	peptidase M20	NA	NA	NA	NA	NA
AUK89256.1|1311012_1312527_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK89257.1|1312530_1313490_+	ABC transporter	NA	NA	NA	NA	NA
AUK89258.1|1313518_1314322_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK89259.1|1314323_1315958_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AUK89260.1|1316041_1317103_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK89261.1|1317574_1318099_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AUK89262.1|1318562_1319465_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89263.1|1319461_1320496_-	hydrolase	NA	NA	NA	NA	NA
AUK89264.1|1320604_1321243_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89265.1|1321537_1321765_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK89266.1|1321887_1322601_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK89267.1|1322845_1323796_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89268.1|1323935_1324181_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89269.1|1324295_1325744_-	2-aminoadipate aminotransferase	NA	NA	NA	NA	NA
AUK89270.1|1325854_1326805_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89271.1|1326801_1327251_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AUK89272.1|1327493_1328396_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP017927	Bordetella pertussis strain J295, complete genome	4105292	1417038	1469191	4105292	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
AUK89352.1|1417038_1417989_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89353.1|1418155_1418509_+	cytochrome C	NA	NA	NA	NA	NA
AUK89354.1|1418521_1418884_+	cytochrome	NA	NA	NA	NA	NA
AUK89355.1|1418925_1419351_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89356.1|1419553_1420810_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AUK89357.1|1421008_1421989_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89358.1|1422138_1423380_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89359.1|1423478_1424429_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89360.1|1424437_1425133_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AUK89361.1|1425174_1427889_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK89362.1|1427954_1428554_-	potassium-transporting ATPase subunit C	NA	NA	NA	NA	NA
AUK89363.1|1428564_1430730_-	potassium-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AUK89364.1|1430753_1432538_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
AUK89365.1|1432537_1432627_-	potassium-transporting ATPase subunit F	NA	NA	NA	NA	NA
AUK89366.1|1433321_1433594_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89367.1|1433593_1435660_+	cation acetate symporter	NA	NA	NA	NA	NA
AUK89368.1|1435656_1436559_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89369.1|1436705_1437608_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89370.1|1437771_1438104_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AUK89371.1|1438100_1438787_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AUK89372.1|1438773_1439733_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AUK89373.1|1439765_1442135_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AUK89374.1|1442134_1442767_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AUK89375.1|1442868_1444209_+	recombination factor protein RarA	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AUK89376.1|1444255_1445611_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AUK89377.1|1445901_1446138_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89378.1|1446325_1446643_-	virulence factor	NA	NA	NA	NA	NA
AUK89379.1|1446915_1447431_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AUK89380.1|1447524_1447686_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89381.1|1447701_1448457_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AUK89382.1|1448795_1449002_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89383.1|1449009_1449669_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AUK89384.1|1449963_1452168_-	porin	NA	NA	NA	NA	NA
AUK89385.1|1452278_1453502_-	multidrug transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AUK89386.1|1453624_1454599_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK89387.1|1454666_1455860_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK89388.1|1455874_1456675_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AUK89389.1|1456671_1458528_-	IucA/IucC family protein	NA	NA	NA	NA	NA
AUK89390.1|1458524_1459130_-	siderophore biosynthesis protein	NA	NA	NA	NA	NA
AUK89391.1|1459148_1460534_-	alcaligin biosynthesis protein	NA	NA	NA	NA	NA
AUK89392.1|1461259_1462486_+	transporter	NA	NA	NA	NA	NA
AUK89393.1|1462574_1463357_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK89394.1|1463503_1464406_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89395.1|1464432_1465206_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AUK89396.1|1465217_1466459_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89397.1|1468288_1469191_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP017927	Bordetella pertussis strain J295, complete genome	4105292	1571028	1642134	4105292	transposase	Ectocarpus_siliculosus_virus(11.11%)	55	NA	NA
AUK89490.1|1571028_1571979_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89491.1|1572000_1573221_+	YggW family oxidoreductase	NA	NA	NA	NA	NA
AUK89492.1|1573406_1574819_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AUK89493.1|1574882_1575950_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AUK89494.1|1575949_1577437_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AUK91631.1|1577446_1578391_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89495.1|1578550_1579249_+	quercetin 2,3-dioxygenase	NA	NA	NA	NA	NA
AUK89496.1|1579326_1580232_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89497.1|1580251_1581154_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89498.1|1581300_1582095_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AUK89499.1|1582099_1583770_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AUK89500.1|1583893_1584943_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK89501.1|1585264_1586041_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AUK89502.1|1586105_1587008_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89503.1|1588301_1589105_+	2,5-didehydrogluconate reductase B	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AUK89504.1|1591798_1592185_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AUK89505.1|1592200_1594291_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
AUK89506.1|1594342_1595296_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AUK91632.1|1595310_1596198_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89507.1|1596335_1597862_+	methylmalonate-semialdehyde dehydrogenase (acylating)	NA	NA	NA	NA	NA
AUK89508.1|1597960_1598461_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AUK89509.1|1598784_1600740_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK89510.1|1600907_1602992_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91633.1|1603018_1603444_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89511.1|1604659_1605430_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AUK89512.1|1605429_1606170_+	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK89513.1|1606211_1607381_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AUK89514.1|1607412_1609497_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AUK89515.1|1609493_1610384_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK89516.1|1610380_1611478_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUK89517.1|1611500_1612790_+	Vi polysaccharide biosynthesis protein VipA/TviB	NA	NA	NA	NA	NA
AUK89518.1|1612801_1613827_+	LPS biosynthesis protein WbpP	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AUK89519.1|1613823_1615881_+	beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase	NA	NA	NA	NA	NA
AUK89520.1|1615894_1617070_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUK89521.1|1617151_1618102_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89522.1|1618160_1618934_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK89523.1|1618926_1620483_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK89524.1|1620479_1621430_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89525.1|1622756_1623359_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89526.1|1623598_1624300_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK89527.1|1624293_1625076_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AUK89528.1|1625260_1626211_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89529.1|1626309_1627047_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AUK89530.1|1627236_1627995_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK89531.1|1628041_1629043_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK89532.1|1629208_1630177_-	phenol degradation protein meta	NA	NA	NA	NA	NA
AUK89533.1|1631716_1632685_+	AAA family ATPase	NA	NA	NA	NA	NA
AUK89534.1|1632693_1633635_+	MoxR protein	NA	NA	NA	NA	NA
AUK91634.1|1634108_1635119_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91636.1|1635109_1636624_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89535.1|1636620_1637967_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91635.1|1637969_1639004_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AUK89536.1|1639053_1640679_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AUK89537.1|1640772_1641252_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89538.1|1641231_1642134_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP017927	Bordetella pertussis strain J295, complete genome	4105292	1662973	1724321	4105292	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	54	NA	NA
AUK89555.1|1662973_1663924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89556.1|1664032_1664221_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91639.1|1664217_1664940_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AUK89557.1|1665378_1666566_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91640.1|1666569_1666920_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK89558.1|1667153_1668566_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89559.1|1668669_1669641_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK89560.1|1669654_1670368_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK89561.1|1670372_1671290_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89562.1|1671396_1671693_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89563.1|1671839_1672742_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89564.1|1673900_1676834_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AUK89565.1|1676833_1677178_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AUK89566.1|1677174_1678803_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AUK89567.1|1678802_1679279_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AUK89568.1|1679278_1679560_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AUK89569.1|1679556_1679883_+	cation:proton antiporter	NA	NA	NA	NA	NA
AUK89570.1|1680038_1680989_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89571.1|1681032_1681575_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89572.1|1681672_1682521_+	hydrolase	NA	NA	NA	NA	NA
AUK91641.1|1682570_1683020_+|tRNA	tRNA-specific adenosine deaminase	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
AUK89573.1|1683016_1684018_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
AUK89574.1|1684030_1684825_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK89575.1|1684873_1686775_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK89576.1|1686771_1687395_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89577.1|1687521_1688646_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK89578.1|1689026_1690631_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
AUK89579.1|1690786_1691563_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AUK89580.1|1691647_1692646_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK89581.1|1692642_1693416_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK89582.1|1694400_1695351_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89583.1|1695374_1695839_-|tRNA	glutamyl-tRNA amidotransferase	tRNA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AUK89584.1|1695985_1697194_+	nitric oxide dioxygenase	NA	NA	NA	NA	NA
AUK89585.1|1697237_1697675_+	BadM/Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
AUK89586.1|1697793_1699083_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AUK89587.1|1701823_1702726_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89588.1|1702872_1703889_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
AUK89589.1|1704067_1705102_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AUK89590.1|1705098_1705725_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AUK89591.1|1705721_1706774_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AUK89592.1|1706823_1707594_+	DNAase	NA	NA	NA	NA	NA
AUK89593.1|1707644_1708481_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89594.1|1708676_1709417_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89595.1|1709491_1710235_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK89596.1|1710896_1711670_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AUK89597.1|1712807_1714097_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
AUK89598.1|1715707_1716955_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK89599.1|1716964_1718674_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AUK89600.1|1718670_1719609_-	CoA ester lyase	NA	NA	NA	NA	NA
AUK89601.1|1719605_1720889_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AUK89602.1|1720892_1721375_-	TRAP transporter small permease protein	NA	NA	NA	NA	NA
AUK89603.1|1721375_1722362_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK89604.1|1722534_1723254_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89605.1|1723370_1724321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP017927	Bordetella pertussis strain J295, complete genome	4105292	1830508	1902018	4105292	transposase,tRNA	Klosneuvirus(22.22%)	60	NA	NA
AUK89683.1|1830508_1831459_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89684.1|1831583_1832393_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK89685.1|1832641_1833544_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89686.1|1834817_1836035_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89687.1|1836031_1837087_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
AUK89688.1|1837091_1837994_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89689.1|1838070_1838943_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AUK89690.1|1839073_1839442_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AUK89691.1|1839499_1840546_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AUK89692.1|1840741_1841998_+	amino acid dehydrogenase	NA	NA	NA	NA	NA
AUK89693.1|1842002_1843340_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK89694.1|1843489_1844446_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89695.1|1845903_1846269_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89696.1|1846316_1847891_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK89697.1|1847943_1848888_+	peptide ABC transporter	NA	NA	NA	NA	NA
AUK91649.1|1848815_1849736_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK89698.1|1849728_1851363_+	microcin ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AUK89699.1|1851359_1852715_+	amidase	NA	NA	NA	NA	NA
AUK89700.1|1853621_1855199_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89701.1|1855202_1856477_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91650.1|1856574_1856949_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89702.1|1858664_1859798_+	general secretion pathway protein	NA	NA	NA	NA	NA
AUK89703.1|1859835_1860441_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AUK89704.1|1860437_1861256_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89705.1|1861327_1863952_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AUK89706.1|1863938_1864193_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89707.1|1864259_1864841_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89708.1|1865144_1865405_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AUK89709.1|1865570_1866194_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AUK89710.1|1866193_1866967_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AUK89711.1|1866963_1868172_-	class V aminotransferase	NA	NA	NA	NA	NA
AUK89712.1|1868197_1868671_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89713.1|1868744_1869695_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89714.1|1869793_1870696_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89715.1|1870842_1872192_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK89716.1|1872957_1873713_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89717.1|1873805_1876688_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AUK89718.1|1877010_1877436_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AUK89719.1|1877463_1878612_+	23S rRNA (adenine(2503)-C(2))-methyltransferase	NA	NA	NA	NA	NA
AUK89720.1|1878608_1879115_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK89721.1|1879130_1880417_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	NA	NA	NA	NA	NA
AUK89722.1|1880466_1881762_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK89723.1|1881763_1882402_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91651.1|1882407_1883565_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AUK89724.1|1883591_1884947_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AUK89725.1|1884950_1886021_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AUK89726.1|1886159_1886396_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
AUK89727.1|1886483_1887590_+	GTPase HflX	NA	NA	NA	NA	NA
AUK89728.1|1887555_1888860_+	HflK protein	NA	NA	NA	NA	NA
AUK89729.1|1888878_1889778_+	HflC protein	NA	NA	NA	NA	NA
AUK89730.1|1889961_1891119_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AUK89731.1|1891195_1892491_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AUK89732.1|1892604_1893144_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
AUK89733.1|1893421_1893634_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AUK89734.1|1893653_1895684_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AUK89735.1|1896369_1898652_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
AUK89736.1|1899061_1899361_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89737.1|1899645_1900059_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AUK89738.1|1900018_1900969_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89739.1|1901067_1902018_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP017927	Bordetella pertussis strain J295, complete genome	4105292	1913222	1961681	4105292	transposase	Klosneuvirus(16.67%)	47	NA	NA
AUK89750.1|1913222_1914173_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89751.1|1914169_1915444_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AUK89752.1|1915547_1916741_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AUK89753.1|1916737_1917391_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK89754.1|1917387_1918824_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AUK89755.1|1918811_1919171_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AUK89756.1|1919256_1919907_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89757.1|1920191_1921094_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89758.1|1921192_1922056_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89759.1|1922139_1924005_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK91655.1|1924262_1925783_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUK89760.1|1925870_1926521_-	NAD(P)H dehydrogenase	NA	NA	NA	NA	NA
AUK89761.1|1927469_1928765_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89762.1|1928786_1929671_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91656.1|1929769_1930645_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AUK89763.1|1930634_1930991_-	RNA signal recognition particle	NA	NA	NA	NA	NA
AUK89764.1|1931121_1932096_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK89765.1|1932225_1932405_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AUK89766.1|1932547_1933027_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89767.1|1933037_1933874_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK89768.1|1933986_1934358_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK89769.1|1934354_1934906_+	ATPase	NA	NA	NA	NA	NA
AUK89770.1|1934921_1936613_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AUK89771.1|1936661_1937342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89772.1|1937589_1938054_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89773.1|1938223_1939153_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91657.1|1939165_1939759_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89774.1|1939886_1941704_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AUK89775.1|1941787_1942738_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91658.1|1942836_1943316_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK89776.1|1943438_1944341_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89777.1|1944359_1944707_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AUK89778.1|1944735_1946175_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AUK89779.1|1946193_1946589_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89780.1|1946763_1947372_+	peptidase S16	NA	NA	NA	NA	NA
AUK89781.1|1947384_1948203_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AUK89782.1|1948154_1949129_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK89783.1|1949157_1950219_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89784.1|1950215_1952432_-	aldehyde oxidase	NA	NA	NA	NA	NA
AUK89785.1|1952445_1952904_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AUK89786.1|1953061_1953406_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89787.1|1953562_1954468_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91659.1|1954554_1955568_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK91660.1|1957547_1958564_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK89788.1|1958706_1960059_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AUK89789.1|1960233_1960530_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89790.1|1960676_1961681_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP017927	Bordetella pertussis strain J295, complete genome	4105292	1974114	2038435	4105292	transposase	Vibrio_phage(20.0%)	54	NA	NA
AUK89804.1|1974114_1975065_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89805.1|1975286_1976237_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89806.1|1976335_1977301_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK89807.1|1977438_1978338_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89808.1|1978865_1980692_+	DUF3604 domain-containing protein	NA	NA	NA	NA	NA
AUK89809.1|1981049_1982420_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89810.1|1982430_1983627_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK89811.1|1983699_1985019_+	acyl--CoA ligase	NA	NA	NA	NA	NA
AUK89812.1|1985015_1985891_+	esterase	NA	NA	NA	NA	NA
AUK89813.1|1985921_1987070_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK89814.1|1987087_1987402_-	2Fe-2S ferredoxin	NA	NA	NA	NA	NA
AUK89815.1|1987423_1988146_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK89816.1|1988145_1988964_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK89817.1|1988968_1989496_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AUK89818.1|1989501_1990758_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AUK89819.1|1991116_1992256_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK89820.1|1992333_1993206_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK89821.1|1994124_1995027_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89822.1|1994986_1995622_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89823.1|1995981_1997304_-	isocitrate lyase	NA	NA	NA	NA	NA
AUK89824.1|1997622_1998444_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
AUK89825.1|1998379_1998721_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89826.1|1998730_1999699_-	MFS transporter	NA	NA	NA	NA	NA
AUK89827.1|1999868_2000441_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AUK89828.1|2000480_2002310_-	excinuclease ABC subunit C	NA	NA	NA	NA	NA
AUK89829.1|2002272_2003331_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
AUK89830.1|2003368_2003830_-	holo-ACP synthase	NA	NA	NA	NA	NA
AUK89831.1|2003914_2004661_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AUK89832.1|2006151_2009382_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AUK89833.1|2009448_2010780_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK89834.1|2011032_2011407_-	DNA-binding protein	NA	NA	NA	NA	NA
AUK89835.1|2011509_2012688_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89836.1|2012698_2013289_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91662.1|2013399_2014206_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AUK89837.1|2014231_2015026_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AUK89838.1|2016026_2017001_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK89839.1|2017159_2017672_-	superoxide dismutase	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AUK89840.1|2017828_2018800_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK89841.1|2020544_2021351_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK89842.1|2021347_2022649_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AUK89843.1|2022599_2023364_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK89844.1|2023477_2024248_-	spermidine synthase	NA	NA	NA	NA	NA
AUK89845.1|2024332_2025520_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK89846.1|2025592_2025967_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AUK89847.1|2026067_2027330_-	glycine/betaine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AUK89848.1|2027326_2028184_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK89849.1|2028356_2029358_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK89850.1|2029809_2030712_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91663.1|2032323_2033475_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AUK89851.1|2033843_2034080_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AUK89852.1|2034143_2034311_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AUK89853.1|2034424_2036230_-	sulfate transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
AUK89854.1|2036483_2037386_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89855.1|2037532_2038435_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP017927	Bordetella pertussis strain J295, complete genome	4105292	2147857	2197778	4105292	transposase,tRNA,protease	Lake_Baikal_phage(22.22%)	41	NA	NA
AUK89935.1|2147857_2149162_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AUK89936.1|2149266_2149920_-	ATP-dependent Clp endopeptidase, proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AUK89937.1|2149922_2151233_-	trigger factor	NA	NA	NA	NA	NA
AUK89938.1|2151429_2151990_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AUK89939.1|2152101_2152302_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AUK89940.1|2152647_2153214_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89941.1|2153297_2153501_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AUK89942.1|2153807_2154128_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89943.1|2154169_2154451_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89944.1|2154525_2155782_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK89945.1|2156164_2156494_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89946.1|2158064_2158886_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AUK89947.1|2158885_2160025_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AUK89948.1|2160031_2160928_+	ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AUK89949.1|2160942_2162850_+	ABC transporter	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AUK89950.1|2163209_2165822_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AUK89951.1|2165874_2168175_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AUK89952.1|2168171_2169380_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AUK89953.1|2169641_2170016_+	hypothetical protein	NA	NA	NA	NA	NA
AUK89954.1|2170012_2170963_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91672.1|2171061_2172459_-	rRNA methyltransferase	NA	NA	NA	NA	NA
AUK89955.1|2173115_2174081_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA	NA
AUK89956.1|2174070_2176932_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AUK89957.1|2176934_2177441_+	signal peptidase II	NA	NA	NA	NA	NA
AUK89958.1|2177545_2178754_+	phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AUK89959.1|2178755_2179694_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89960.1|2179855_2180329_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK89961.1|2180325_2181276_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89962.1|2181374_2182325_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89963.1|2182423_2183374_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK89964.1|2183484_2183925_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89965.1|2184053_2185283_-	lytic transglycosylase	NA	NA	NA	NA	NA
AUK89966.1|2185321_2186143_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89967.1|2186196_2187348_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK89968.1|2187439_2187910_-	hypothetical protein	NA	NA	NA	NA	NA
AUK89969.1|2190478_2193028_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AUK89970.1|2193098_2195672_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AUK89971.1|2195937_2196138_+	general stress protein CsbD	NA	NA	NA	NA	NA
AUK89972.1|2196169_2196331_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AUK89973.1|2196388_2196727_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AUK89974.1|2196875_2197778_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP017927	Bordetella pertussis strain J295, complete genome	4105292	2477019	2535263	4105292	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
AUK90199.1|2477019_2477922_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90200.1|2478449_2479106_-	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
AUK90201.1|2479120_2480788_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK90202.1|2480790_2481420_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK90203.1|2481631_2482726_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK90204.1|2482870_2483683_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AUK90205.1|2483686_2485270_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AUK90206.1|2485440_2486571_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUK90207.1|2486757_2487834_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AUK91697.1|2487915_2488566_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUK90208.1|2488580_2489984_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AUK90209.1|2490267_2491086_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK90210.1|2491082_2491787_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AUK90211.1|2492686_2493802_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90212.1|2493835_2494210_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90213.1|2494232_2495390_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AUK90214.1|2495402_2495636_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90215.1|2496270_2499240_-	formate dehydrogenase	NA	NA	NA	NA	NA
AUK90216.1|2499254_2499464_-	formate dehydrogenase	NA	NA	NA	NA	NA
AUK90217.1|2499615_2500245_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91698.1|2500241_2502299_-	4Fe-4S ferredoxin	NA	NA	NA	NA	NA
AUK90218.1|2502355_2503036_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90219.1|2503032_2503593_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90220.1|2503599_2504697_-	MRP family ATP-binding protein	NA	NA	NA	NA	NA
AUK90221.1|2504849_2505443_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AUK90222.1|2505439_2506732_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AUK90223.1|2506745_2507288_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AUK90224.1|2507297_2508134_-	peptidase M48	NA	NA	NA	NA	NA
AUK90225.1|2508167_2509229_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AUK90226.1|2509270_2510323_-	diguanylate cyclase	NA	NA	NA	NA	NA
AUK90227.1|2510338_2510641_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90228.1|2510782_2511733_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90229.1|2511911_2513606_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK90230.1|2513602_2514688_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AUK90231.1|2514735_2515635_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90232.1|2515645_2516290_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AUK90233.1|2517311_2520554_-	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
AUK90234.1|2520564_2521719_-	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
AUK90235.1|2521945_2522908_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
AUK90236.1|2523054_2523957_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90237.1|2524103_2525006_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90238.1|2525015_2525705_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90239.1|2525764_2526202_-	thioesterase	NA	NA	NA	NA	NA
AUK90240.1|2526247_2527141_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK90241.1|2527188_2528361_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK90242.1|2528357_2529512_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK90243.1|2529708_2530059_-	RnfH family protein	NA	NA	NA	NA	NA
AUK90244.1|2530048_2530483_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AUK90245.1|2530499_2531402_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90246.1|2531597_2532065_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AUK90247.1|2532045_2533203_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AUK90248.1|2533268_2534195_-	paraslipin	NA	NA	NA	NA	NA
AUK90249.1|2534360_2535263_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP017927	Bordetella pertussis strain J295, complete genome	4105292	2577589	2644040	4105292	transposase	uncultured_Caudovirales_phage(40.0%)	58	NA	NA
AUK90287.1|2577589_2578492_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90288.1|2578507_2578720_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90289.1|2578861_2579434_+	flagellar basal body protein FliL	NA	NA	NA	NA	NA
AUK90290.1|2579436_2580447_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AUK90291.1|2580439_2580940_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AUK90292.1|2580950_2581292_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AUK91702.1|2581360_2582095_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AUK90293.1|2582111_2582381_+	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AUK90294.1|2582403_2583192_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AUK91703.1|2583238_2584255_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK90295.1|2584471_2585914_-	chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AUK90296.1|2586092_2587712_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AUK90297.1|2587832_2589653_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AUK90298.1|2589731_2591264_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AUK90299.1|2591297_2592944_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AUK90300.1|2593013_2594036_-	flagellar rod assembly protein/muramidase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AUK90301.1|2594053_2595187_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AUK90302.1|2595189_2595879_-	flagellar basal body L-ring protein	NA	NA	NA	NA	NA
AUK90303.1|2595878_2596664_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AUK90304.1|2596707_2597472_-	flagellar biosynthesis protein FlgF	NA	NA	NA	NA	NA
AUK90305.1|2597510_2598932_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AUK90306.1|2598997_2599702_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AUK90307.1|2599749_2600169_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AUK90308.1|2600181_2600589_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AUK91704.1|2600772_2601483_+	flagella basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AUK90309.1|2601609_2601900_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AUK90310.1|2601917_2602400_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AUK90311.1|2606905_2608060_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AUK91705.1|2608365_2609382_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK90312.1|2609628_2610417_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK90313.1|2610483_2611164_+	cysteine ABC transporter permease	NA	NA	NA	NA	NA
AUK90314.1|2611160_2611931_+	ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AUK90315.1|2612028_2612979_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90316.1|2613034_2613952_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AUK90317.1|2613962_2615141_-	mandelate racemase	NA	NA	NA	NA	NA
AUK90318.1|2615160_2616156_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90319.1|2617744_2618353_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUK90320.1|2618340_2619381_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK90321.1|2619398_2620361_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90322.1|2620357_2621551_-	CoA transferase	NA	NA	NA	NA	NA
AUK90323.1|2621547_2622345_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AUK90324.1|2622370_2623357_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90325.1|2623375_2625415_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUK91706.1|2625616_2626297_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90326.1|2626310_2627222_-	CoA ester lyase	NA	NA	NA	NA	NA
AUK90327.1|2627218_2627797_-	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
AUK90328.1|2627935_2628841_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90329.1|2628848_2632268_+	nuclease	NA	NA	NA	NA	NA
AUK90330.1|2632255_2634856_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK90331.1|2635811_2636444_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90332.1|2636837_2637596_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90333.1|2637592_2638795_+	cardiolipin synthase B	NA	NA	NA	NA	NA
AUK90334.1|2638791_2638992_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90335.1|2638982_2639933_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90336.1|2640840_2641986_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90337.1|2641972_2642728_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK90338.1|2642844_2643024_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90339.1|2643089_2644040_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP017927	Bordetella pertussis strain J295, complete genome	4105292	2807645	2870041	4105292	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	56	NA	NA
AUK90471.1|2807645_2808548_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90472.1|2808924_2809530_+	fimbrial protein	NA	NA	NA	NA	NA
AUK90473.1|2809583_2810897_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AUK90474.1|2810971_2811442_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AUK90475.1|2811441_2812230_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AUK90476.1|2812240_2813893_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AUK90477.1|2813980_2814883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91723.1|2816092_2816599_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AUK90478.1|2816595_2817360_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AUK90479.1|2817375_2817660_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AUK90480.1|2817724_2818714_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AUK90481.1|2818885_2819815_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AUK90482.1|2819786_2820473_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AUK90483.1|2820506_2821052_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AUK90484.1|2821096_2822362_+	peptidase M48	NA	NA	NA	NA	NA
AUK90485.1|2822358_2823261_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
AUK90486.1|2824442_2825387_-	peptide ABC transporter	NA	NA	NA	NA	NA
AUK90487.1|2825481_2826999_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK90488.1|2827040_2828669_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK90489.1|2828776_2829658_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90490.1|2829918_2830146_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90491.1|2832770_2833145_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AUK90492.1|2833169_2833508_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK90493.1|2833551_2835186_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AUK90494.1|2835224_2836571_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AUK91724.1|2836678_2838100_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AUK90495.1|2838169_2838754_-	nitroreductase	NA	NA	NA	NA	NA
AUK90496.1|2838856_2839807_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90497.1|2839941_2841048_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90498.1|2841058_2842156_+	cyclic pyranopterin phosphate synthase	NA	NA	NA	NA	NA
AUK90499.1|2842300_2843506_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AUK90500.1|2843512_2844034_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AUK91725.1|2844030_2844513_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AUK90501.1|2844518_2844770_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
AUK90502.1|2844750_2845236_-	molybdenum cofactor biosynthesis protein C	NA	NA	NA	NA	NA
AUK90503.1|2845371_2848833_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90504.1|2848850_2849735_+	carboxymethylenebutenolidase	NA	NA	NA	NA	NA
AUK90505.1|2849744_2850176_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91726.1|2850422_2850926_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AUK90506.1|2851003_2852404_+	MFS transporter	NA	NA	NA	NA	NA
AUK90507.1|2852478_2853354_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91727.1|2853350_2854358_-	biotin synthase BioB	NA	NA	NA	NA	NA
AUK90508.1|2854825_2855131_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90509.1|2855221_2855812_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91728.1|2856002_2857019_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK90510.1|2857210_2859547_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AUK90511.1|2859629_2860064_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUK90512.1|2860162_2861113_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90513.1|2861109_2861904_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AUK90514.1|2861935_2862640_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK90515.1|2862714_2863515_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90516.1|2863511_2863919_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AUK90517.1|2863915_2864557_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AUK91729.1|2864549_2866550_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUK90518.1|2867810_2869142_+	arabinose ABC transporter permease	NA	NA	NA	NA	NA
AUK90519.1|2869138_2870041_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP017927	Bordetella pertussis strain J295, complete genome	4105292	2884565	2925924	4105292	transposase,protease	uncultured_Mediterranean_phage(40.0%)	30	NA	NA
AUK90530.1|2884565_2885468_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90531.1|2885846_2889668_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUK90532.1|2889824_2890493_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90533.1|2890497_2892171_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
AUK90534.1|2892189_2893509_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AUK90535.1|2893513_2895829_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
AUK91730.1|2895884_2898053_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AUK91731.1|2898049_2902615_-	alpha-2-macroglobulin	NA	NA	NA	NA	NA
AUK90536.1|2903328_2903643_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AUK90537.1|2903870_2904116_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AUK90538.1|2904237_2904729_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	4.8e-14
AUK90539.1|2904828_2906034_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AUK90540.1|2906149_2907547_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AUK90541.1|2907663_2908242_-	superoxide dismutase	NA	NA	NA	NA	NA
AUK90542.1|2908314_2909706_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AUK90543.1|2909873_2910824_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90544.1|2911104_2911725_+	flagellar motor protein MotA	NA	NA	NA	NA	NA
AUK90545.1|2911721_2912135_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AUK90546.1|2912131_2913175_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AUK90547.1|2913230_2913419_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90548.1|2913428_2914193_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AUK90549.1|2914283_2914940_+	adenylate kinase	NA	NA	NA	NA	NA
AUK90550.1|2915031_2915790_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK90551.1|2915815_2917417_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AUK90552.1|2917617_2918622_+	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AUK90553.1|2918722_2918986_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AUK90554.1|2919103_2919880_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AUK90555.1|2920470_2921421_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90556.1|2923804_2924917_-	malate dehydrogenase	NA	NA	NA	NA	NA
AUK90557.1|2924973_2925924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP017927	Bordetella pertussis strain J295, complete genome	4105292	2948303	3010493	4105292	transposase	Staphylococcus_phage(14.29%)	54	NA	NA
AUK90580.1|2948303_2949167_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90581.1|2949362_2950835_-	magnesium transporter	NA	NA	NA	NA	NA
AUK90582.1|2950845_2951256_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK90583.1|2951319_2952366_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90584.1|2952472_2953351_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90585.1|2953364_2954561_-	amidohydrolase	NA	NA	NA	NA	NA
AUK90586.1|2954622_2956314_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AUK90587.1|2956310_2957213_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90588.1|2957381_2958278_-	inositol monophosphatase	NA	NA	NA	NA	NA
AUK90589.1|2960555_2962781_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AUK90590.1|2962945_2964034_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AUK90591.1|2963990_2964644_+	DL-methionine transporter permease subunit	NA	NA	NA	NA	NA
AUK90592.1|2964691_2965489_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK90593.1|2966068_2966971_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90594.1|2967051_2968200_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK90595.1|2968256_2969207_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90596.1|2969305_2969611_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AUK90597.1|2969639_2970074_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90598.1|2970075_2971320_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90599.1|2971316_2972027_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91733.1|2972041_2972953_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90600.1|2973315_2973720_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90601.1|2973716_2974175_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90602.1|2974181_2975090_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91734.1|2975086_2975953_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK90603.1|2975939_2976767_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AUK90604.1|2976777_2977905_+	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AUK90605.1|2980262_2981525_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK90606.1|2981531_2982284_+	DNA-binding protein	NA	NA	NA	NA	NA
AUK90607.1|2982335_2982521_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91735.1|2982796_2983261_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AUK90608.1|2983340_2983952_+	3-methyladenine DNA glycosylase	NA	NA	NA	NA	NA
AUK90609.1|2984096_2986205_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90610.1|2986201_2987104_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90611.1|2987255_2987876_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91736.1|2987979_2988720_+	oxidoreductase	NA	NA	NA	NA	NA
AUK90612.1|2989854_2990979_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90613.1|2991024_2991393_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90614.1|2991634_2992537_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90615.1|2993620_2994163_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90616.1|2994596_2995499_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90617.1|2995495_2996404_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90618.1|2996530_2997367_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AUK90619.1|2997879_2998989_+	porin	NA	NA	NA	NA	NA
AUK90620.1|2999050_2999953_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90621.1|3000193_3000976_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK90622.1|3000989_3001754_-	short-chain dehydrogenase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
AUK90623.1|3001766_3003113_-	MFS transporter	NA	NA	NA	NA	NA
AUK90624.1|3003138_3004068_-	acetylxylan esterase	NA	NA	NA	NA	NA
AUK90625.1|3004183_3005089_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90626.1|3005106_3006306_-	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
AUK90627.1|3006378_3007071_-	hydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AUK90628.1|3007119_3009546_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
AUK90629.1|3009590_3010493_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP017927	Bordetella pertussis strain J295, complete genome	4105292	3233512	3281130	4105292	transposase,tRNA	Erwinia_phage(10.0%)	46	NA	NA
AUK90807.1|3233512_3234463_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90808.1|3234907_3235219_-	cell division protein ZapA	NA	NA	NA	NA	NA
AUK90809.1|3235218_3235749_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90810.1|3235911_3236862_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90811.1|3237151_3237616_+	tricarboxylate transporter	NA	NA	NA	NA	NA
AUK90812.1|3237630_3239136_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90813.1|3239392_3240997_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK90814.1|3241052_3241958_+	oxidoreductase	NA	NA	NA	NA	NA
AUK90815.1|3242398_3243301_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90816.1|3243447_3244350_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90817.1|3244479_3245061_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AUK91748.1|3245485_3245791_+	RND transporter	NA	NA	NA	NA	NA
AUK90818.1|3245804_3247139_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AUK90819.1|3247160_3247700_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AUK90820.1|3247847_3248312_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AUK90821.1|3248454_3249570_-	cobalamin biosynthesis protein CobW	NA	NA	NA	NA	NA
AUK90822.1|3249846_3250350_-	transcriptional repressor	NA	NA	NA	NA	NA
AUK90823.1|3250487_3250688_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90824.1|3250678_3251401_+	ABC transporter	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AUK90825.1|3251397_3252294_+	zinc ABC transporter permease	NA	NA	NA	NA	NA
AUK90826.1|3252290_3253226_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK90827.1|3253186_3253855_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90828.1|3253845_3254814_+	nickel transporter	NA	NA	NA	NA	NA
AUK90829.1|3254862_3257004_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AUK90830.1|3257016_3257997_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AUK90831.1|3258011_3258704_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90832.1|3258730_3259642_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AUK90833.1|3259684_3260575_-	acyltransferase	NA	NA	NA	NA	NA
AUK90834.1|3260571_3261426_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AUK90835.1|3261709_3262873_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
AUK90836.1|3262983_3263235_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AUK90837.1|3263314_3264355_+	alpha-mannosyltransferase	NA	NA	NA	NA	NA
AUK90838.1|3264634_3266053_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AUK90839.1|3266123_3266459_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90840.1|3266458_3267301_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AUK90841.1|3267447_3268350_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90842.1|3268414_3269386_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90843.1|3269449_3270469_-	acetylpolyamine amidohydrolase	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AUK90844.1|3270470_3271811_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91749.1|3272121_3272802_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AUK91750.1|3272877_3274941_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
AUK90845.1|3274937_3276032_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AUK90846.1|3276046_3277237_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90847.1|3277325_3279014_-	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
AUK90848.1|3279288_3280041_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AUK90849.1|3280179_3281130_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP017927	Bordetella pertussis strain J295, complete genome	4105292	3291057	3331007	4105292	transposase,tRNA,protease,integrase	Klosneuvirus(33.33%)	27	3313854:3313872	3333742:3333760
AUK90859.1|3291057_3292008_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90860.1|3292535_3293309_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK90861.1|3293441_3294452_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK90862.1|3294603_3296259_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK90863.1|3296313_3296655_-	cupin	NA	NA	NA	NA	NA
AUK90864.1|3296668_3298108_-	amine oxidase	NA	NA	NA	NA	NA
AUK90865.1|3298240_3299056_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90866.1|3299297_3300200_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90867.1|3301593_3302535_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90868.1|3302761_3303502_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90869.1|3303587_3304490_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90870.1|3305979_3307551_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK90871.1|3307883_3309737_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90872.1|3309781_3312346_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
3313854:3313872	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AUK90873.1|3314498_3314783_-	hypothetical protein	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AUK90874.1|3314864_3315776_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90875.1|3315845_3316091_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90876.1|3316319_3316577_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90877.1|3317091_3317994_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90878.1|3318225_3319437_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AUK90879.1|3319452_3322404_-	site-specific DNA-methyltransferase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AUK91753.1|3322405_3325162_-	restriction endonuclease	NA	NA	NA	NA	NA
AUK90880.1|3325672_3326719_-	cell filamentation protein Fic	NA	NA	NA	NA	NA
AUK90881.1|3327060_3328188_-|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AUK90882.1|3328467_3329559_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AUK90883.1|3329631_3330414_-|protease	CAAX protease	protease	NA	NA	NA	NA
AUK90884.1|3330410_3331007_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3333742:3333760	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 27
CP017927	Bordetella pertussis strain J295, complete genome	4105292	3379993	3433638	4105292	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AUK90921.1|3379993_3380896_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90922.1|3381300_3381945_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AUK90923.1|3381969_3382554_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AUK90924.1|3382654_3383272_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AUK90925.1|3383274_3384990_-	urease subunit alpha	NA	NA	NA	NA	NA
AUK90926.1|3384986_3385295_-	urease subunit beta	NA	NA	NA	NA	NA
AUK91757.1|3385311_3385929_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AUK90927.1|3385973_3386276_-	urease subunit gamma	NA	NA	NA	NA	NA
AUK90928.1|3386376_3387231_-	urease accessory protein	NA	NA	NA	NA	NA
AUK90929.1|3388502_3388910_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AUK90930.1|3389279_3390074_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90931.1|3390174_3391410_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AUK90932.1|3391478_3392495_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK90933.1|3392506_3393883_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90934.1|3393879_3395076_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90935.1|3395072_3396611_-	SpoVR family protein	NA	NA	NA	NA	NA
AUK90936.1|3396607_3397867_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90937.1|3399807_3400710_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90938.1|3401524_3402619_-	CoA transferase	NA	NA	NA	NA	NA
AUK90939.1|3402611_3403946_-	CoA ligase	NA	NA	NA	NA	NA
AUK90940.1|3403899_3404583_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90941.1|3404608_3405772_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK90942.1|3405768_3406770_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK90943.1|3406769_3407642_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK90944.1|3407638_3408388_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AUK90945.1|3408384_3409176_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AUK90946.1|3409172_3410312_-	ABC transporter	NA	NA	NA	NA	NA
AUK90947.1|3410587_3411373_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK90948.1|3411406_3412189_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK90949.1|3412192_3412582_+	DNA-binding protein	NA	NA	NA	NA	NA
AUK90950.1|3413721_3414585_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK90951.1|3414620_3415709_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90952.1|3415705_3416608_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90953.1|3417009_3419988_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90954.1|3420914_3421793_+	fatty acid desaturase	NA	NA	NA	NA	NA
AUK90955.1|3421828_3422161_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90956.1|3422139_3423660_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90957.1|3423741_3424692_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90958.1|3424688_3425156_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AUK90959.1|3425198_3425969_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK90960.1|3425989_3426790_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AUK90961.1|3426800_3428210_+	lytic transglycosylase	NA	NA	NA	NA	NA
AUK90962.1|3428304_3429090_+	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK91758.1|3429329_3430346_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK90963.1|3430453_3430846_-	osmotically inducible protein OsmC	NA	NA	NA	NA	NA
AUK90964.1|3430983_3431664_+	hypothetical protein	NA	NA	NA	NA	NA
AUK90965.1|3431668_3432640_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK90966.1|3432735_3433638_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP017927	Bordetella pertussis strain J295, complete genome	4105292	3439841	3499091	4105292	transposase,tRNA	Acinetobacter_phage(27.27%)	50	NA	NA
AUK90970.1|3439841_3441605_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AUK90971.1|3441716_3442595_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AUK90972.1|3442707_3443523_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AUK90973.1|3443526_3443778_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AUK91759.1|3443862_3444879_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK90974.1|3445209_3445431_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91760.1|3447791_3448658_-	EamA family transporter	NA	NA	NA	NA	NA
AUK90975.1|3449206_3450415_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK90976.1|3450494_3452066_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK90977.1|3452183_3453119_-	glycosyl transferase	NA	NA	NA	NA	NA
AUK90978.1|3453307_3454252_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AUK90979.1|3454320_3454491_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90980.1|3454819_3460537_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AUK90981.1|3460542_3461670_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AUK90982.1|3461725_3462352_+	aminotransferase	NA	NA	NA	NA	NA
AUK91761.1|3462623_3463640_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK90983.1|3463735_3464446_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK91762.1|3464442_3465432_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK90984.1|3465527_3467159_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AUK90985.1|3467161_3467899_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90986.1|3468054_3468927_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AUK90987.1|3469276_3470416_+	MFS transporter	NA	NA	NA	NA	NA
AUK90988.1|3470412_3471072_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AUK90989.1|3471143_3471776_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK90990.1|3471805_3472324_+	flavin reductase	NA	NA	NA	NA	NA
AUK90991.1|3472334_3473444_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUK90992.1|3473490_3474345_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AUK90993.1|3474346_3475249_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK90994.1|3476471_3477422_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90995.1|3477518_3478652_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90996.1|3478688_3478937_-	hypothetical protein	NA	NA	NA	NA	NA
AUK90997.1|3479176_3480166_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK90998.1|3480341_3481130_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AUK90999.1|3481126_3482158_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AUK91000.1|3482176_3482740_-	anthranilate/aminodeoxychorismate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AUK91001.1|3482795_3484316_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AUK91002.1|3484579_3485284_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AUK91003.1|3485291_3486020_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AUK91004.1|3486134_3486509_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AUK91005.1|3486551_3487841_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91006.1|3487837_3489007_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AUK91007.1|3489033_3489843_+	disulfide bond formation protein DsbC	NA	NA	NA	NA	NA
AUK91008.1|3489902_3490838_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AUK91009.1|3490850_3491801_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91010.1|3491899_3492862_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AUK91011.1|3492893_3493253_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AUK91012.1|3493377_3494280_+	oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AUK91763.1|3494281_3496048_-	peptidase M61	NA	NA	NA	NA	NA
AUK91013.1|3496088_3496865_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK91014.1|3498188_3499091_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP017927	Bordetella pertussis strain J295, complete genome	4105292	3514077	3572150	4105292	transposase,tRNA,holin	Catovirus(12.5%)	50	NA	NA
AUK91027.1|3514077_3515028_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91028.1|3515156_3516290_-	peptidase	NA	NA	NA	NA	NA
AUK91029.1|3516333_3517239_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK91030.1|3518938_3519859_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK91031.1|3519866_3520844_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK91032.1|3520902_3521862_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AUK91033.1|3523911_3524148_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91034.1|3524274_3525138_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AUK91035.1|3525226_3526048_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK91036.1|3526127_3526865_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK91037.1|3526861_3527854_-	2-nitropropane dioxygenase	NA	NA	NA	NA	NA
AUK91766.1|3528006_3528630_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91038.1|3528674_3529823_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK91039.1|3532194_3533097_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91040.1|3533437_3534388_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91041.1|3534534_3535437_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91042.1|3535733_3536231_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91043.1|3536273_3538049_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91044.1|3538056_3538923_+	copper resistance protein	NA	NA	NA	NA	NA
AUK91045.1|3538929_3539655_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK91046.1|3539824_3540055_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91047.1|3540092_3540314_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91048.1|3540833_3541604_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91049.1|3541917_3542508_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AUK91050.1|3542541_3543870_-	amidase	NA	NA	NA	NA	NA
AUK91051.1|3543944_3545090_-	transporter	NA	NA	NA	NA	NA
AUK91052.1|3545201_3546200_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91053.1|3546162_3546597_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AUK91054.1|3548113_3548998_+	EamA family transporter	NA	NA	NA	NA	NA
AUK91055.1|3548994_3550200_-	cardiolipin synthase B	NA	NA	NA	NA	NA
AUK91056.1|3550196_3551057_-	endonuclease	NA	NA	NA	NA	NA
AUK91057.1|3551169_3552960_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AUK91767.1|3553000_3553645_-	hypothetical protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
AUK91058.1|3553666_3553975_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AUK91768.1|3554140_3555427_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91059.1|3555553_3556813_-|holin	choline dehydrogenase	holin	A0A2I2L3D3	Orpheovirus	27.6	6.1e-13
AUK91060.1|3556860_3557811_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91061.1|3559762_3560977_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AUK91062.1|3561082_3562072_+	D-arabinose 5-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AUK91063.1|3562068_3562677_+	phenylphosphate carboxylase subunit delta	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AUK91064.1|3562689_3563319_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AUK91065.1|3563315_3563936_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AUK91066.1|3563967_3564759_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AUK91067.1|3565112_3565334_+	ribosomal subunit interface protein	NA	NA	NA	NA	NA
AUK91068.1|3565610_3566066_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AUK91069.1|3566084_3567011_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AUK91070.1|3567064_3568351_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK91071.1|3569281_3570154_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AUK91072.1|3570150_3571101_+	hypothetical protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AUK91073.1|3571247_3572150_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP017927	Bordetella pertussis strain J295, complete genome	4105292	3704321	3747492	4105292	transposase,tRNA,integrase	Streptococcus_phage(11.11%)	41	3742331:3742349	3748115:3748133
AUK91183.1|3704321_3705224_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91184.1|3705371_3706274_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91185.1|3706270_3706906_-	lysine transporter LysE	NA	NA	NA	NA	NA
AUK91186.1|3707035_3707935_+	transcriptional regulator ArgP	NA	NA	NA	NA	NA
AUK91187.1|3708030_3708522_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91188.1|3708568_3709534_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK91189.1|3710667_3711909_+	2-aminoadipate aminotransferase	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AUK91190.1|3712022_3713039_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AUK91191.1|3713073_3713550_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91192.1|3713692_3714601_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AUK91193.1|3714714_3715827_-	DNA protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AUK91776.1|3715927_3716413_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK91194.1|3716549_3717800_+	kynureninase	NA	NA	NA	NA	NA
AUK91195.1|3717901_3718414_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AUK91196.1|3718512_3719463_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91197.1|3719528_3720467_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AUK91198.1|3720489_3721116_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AUK91199.1|3721112_3721769_-	HAD family hydrolase	NA	NA	NA	NA	NA
AUK91200.1|3721765_3722368_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91201.1|3722374_3722962_-	Rossman fold protein, TIGR00730 family	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
AUK91202.1|3723142_3723712_+	bacterioferritin	NA	NA	NA	NA	NA
AUK91203.1|3723782_3725102_-	ribosomal protein S12 methylthiotransferase	NA	NA	NA	NA	NA
AUK91204.1|3725208_3725400_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AUK91205.1|3725651_3726941_+	glycine/D-amino acid oxidase	NA	NA	NA	NA	NA
AUK91206.1|3727095_3728091_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91207.1|3728175_3728850_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91208.1|3728846_3729749_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91209.1|3729958_3731200_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AUK91210.1|3731196_3732141_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AUK91211.1|3732307_3733210_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91212.1|3733169_3734099_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91213.1|3734152_3734488_-	alkylhydroperoxidase	NA	NA	NA	NA	NA
AUK91214.1|3734532_3735297_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK91215.1|3735320_3736061_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK91216.1|3736068_3737622_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
AUK91217.1|3737656_3738634_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91218.1|3738906_3739488_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AUK91219.1|3739539_3746673_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
3742331:3742349	attL	GCGACCCGCAGCGTGCCGG	NA	NA	NA	NA
AUK91220.1|3746888_3747020_-	entericidin	NA	NA	NA	NA	NA
AUK91777.1|3747051_3747177_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91221.1|3747285_3747492_-|integrase	integrase	integrase	NA	NA	NA	NA
3748115:3748133	attR	GCGACCCGCAGCGTGCCGG	NA	NA	NA	NA
>prophage 31
CP017927	Bordetella pertussis strain J295, complete genome	4105292	3753427	3789102	4105292	transposase,integrase	Burkholderia_phage(11.11%)	37	3749966:3749983	3794606:3794623
3749966:3749983	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AUK91228.1|3753427_3754330_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91229.1|3754340_3754982_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91230.1|3755148_3755391_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91231.1|3755537_3756440_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91232.1|3756475_3756943_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AUK91233.1|3757176_3757554_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91234.1|3757550_3757733_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91235.1|3757736_3758723_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AUK91236.1|3758719_3759367_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AUK91237.1|3759424_3759952_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91238.1|3759988_3761173_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AUK91239.1|3761183_3761525_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
AUK91240.1|3761517_3761637_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91241.1|3761637_3761838_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91242.1|3761834_3762824_-|integrase	integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AUK91243.1|3764310_3766281_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91244.1|3766522_3766921_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91245.1|3766929_3767853_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91246.1|3768358_3769261_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91247.1|3769491_3771183_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AUK91248.1|3771231_3771504_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AUK91249.1|3771500_3771872_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AUK91250.1|3771967_3772102_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AUK91251.1|3772507_3773917_+	chromosomal replication initiation protein DnaA	NA	NA	NA	NA	NA
AUK91252.1|3773919_3775029_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
AUK91253.1|3775123_3777577_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AUK91254.1|3777695_3778487_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91255.1|3778606_3780034_+	amidase	NA	NA	NA	NA	NA
AUK91778.1|3780072_3781044_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK91256.1|3781128_3781332_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91257.1|3781462_3782626_+	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AUK91258.1|3782713_3783559_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK91259.1|3785163_3786066_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91260.1|3786062_3786407_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91261.1|3786620_3786995_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91262.1|3787069_3788128_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK91263.1|3788151_3789102_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3794606:3794623	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
>prophage 32
CP017927	Bordetella pertussis strain J295, complete genome	4105292	4027463	4080847	4105292	transposase	Planktothrix_phage(40.0%)	45	NA	NA
AUK91480.1|4027463_4028414_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91481.1|4028583_4029810_+	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase	NA	NA	NA	NA	NA
AUK91482.1|4030009_4030876_+	AAA family ATPase	NA	NA	NA	NA	NA
AUK91483.1|4030868_4031831_+	NUDIX hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AUK91484.1|4031931_4032882_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91485.1|4033028_4033931_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91486.1|4034077_4034980_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91487.1|4034976_4036470_-	RND transporter	NA	NA	NA	NA	NA
AUK91488.1|4036466_4039574_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AUK91489.1|4039570_4042639_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AUK91490.1|4042635_4043886_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK91491.1|4044066_4044819_-	cell division protein ZapD	NA	NA	NA	NA	NA
AUK91793.1|4044860_4045505_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AUK91492.1|4045513_4046353_-	prepilin peptidase	NA	NA	NA	NA	NA
AUK91493.1|4046593_4047337_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91494.1|4047419_4047767_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUK91495.1|4047864_4048707_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AUK91496.1|4048751_4049639_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AUK91497.1|4049665_4049854_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AUK91498.1|4049951_4051409_+	MFS transporter	NA	NA	NA	NA	NA
AUK91499.1|4051395_4052922_+	glycerol kinase	NA	NA	NA	NA	NA
AUK91500.1|4052940_4053408_-	hypothetical protein	NA	NA	NA	NA	NA
AUK91501.1|4053407_4054430_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK91502.1|4054550_4055291_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AUK91503.1|4055345_4056446_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK91504.1|4056447_4057638_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK91505.1|4057757_4058774_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AUK91506.1|4059092_4059764_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AUK91507.1|4059760_4060669_+	permease	NA	NA	NA	NA	NA
AUK91508.1|4060880_4061528_+	chemotaxis protein CheD	NA	NA	NA	NA	NA
AUK91794.1|4065388_4066456_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AUK91509.1|4066466_4067276_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK91510.1|4067365_4068139_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK91511.1|4068369_4069272_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK91512.1|4069283_4070183_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91513.1|4070172_4071327_+	acyl-CoA transferase	NA	NA	NA	NA	NA
AUK91514.1|4071366_4072779_+	hypothetical protein	NA	NA	NA	NA	NA
AUK91515.1|4072801_4073770_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK91516.1|4073771_4074596_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK91517.1|4074592_4075354_+	nitrobenzoate reductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
AUK91518.1|4075434_4076121_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK91519.1|4076318_4077302_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AUK91520.1|4077298_4078078_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK91795.1|4078165_4079398_+	CoA transferase	NA	NA	NA	NA	NA
AUK91521.1|4079944_4080847_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
