assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002859765.1_ASM285976v1	CP018038	Bordetella pertussis strain J207 chromosome, complete genome	1	681092-681201	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG	Orphan	GGGGACAGATACCGTCTTGGCCGTCAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG	NA,NA	NA|272aa|up_9|CP018038.1_668022_668838_-	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|293aa|up_8|CP018038.1_668950_669829_-	PRK00030, minC, septum site-determining protein MinC	NA|588aa|up_7|CP018038.1_669940_671704_-	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional	NA|447aa|up_6|CP018038.1_671819_673160_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|352aa|up_5|CP018038.1_673156_674212_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|475aa|up_4|CP018038.1_674228_675653_-	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|234aa|up_3|CP018038.1_675652_676354_-	PRK09468, ompR, osmolarity response regulator; Provisional	NA|324aa|up_2|CP018038.1_678903_679875_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|227aa|up_1|CP018038.1_679879_680560_-	pfam04391, DUF533, Protein of unknown function (DUF533)	NA|131aa|up_0|CP018038.1_680697_681090_+	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_0|CP018038.1_682453_683239_-	PRK06997, PRK06997, enoyl-[acyl-carrier-protein] reductase FabI	NA|470aa|down_1|CP018038.1_683333_684743_-	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional	NA|267aa|down_2|CP018038.1_684753_685554_-	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase	NA|257aa|down_3|CP018038.1_685574_686345_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|156aa|down_4|CP018038.1_686387_686855_+	PRK00203, rnhA, ribonuclease H; Reviewed	NA|317aa|down_5|CP018038.1_686851_687802_-	pfam00665, rve, Integrase core domain	NA|507aa|down_6|CP018038.1_687882_689403_-	PRK06816, PRK06816, StlD/DarB family beta-ketosynthase	NA|111aa|down_7|CP018038.1_689381_689714_-	PRK06816, PRK06816, StlD/DarB family beta-ketosynthase	NA|293aa|down_8|CP018038.1_689749_690628_-	pfam00487, FA_desaturase, Fatty acid desaturase	NA|993aa|down_9|CP018038.1_691554_694533_-	pfam17936, Big_6, Bacterial Ig domain
GCA_002859765.1_ASM285976v1	CP018038	Bordetella pertussis strain J207 chromosome, complete genome	2	2967729-2967845	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG	Orphan	TTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA	34	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG	NA|59aa|up_0|CP018038.1_2967511_2967688_-,NA|101aa|down_9|CP018038.1_2980528_2980831_+	NA|163aa|up_9|CP018038.1_2949454_2949943_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|899aa|up_8|CP018038.1_2950068_2952765_+	PRK13012, PRK13012, 2-oxoacid dehydrogenase subunit E1; Provisional	NA|761aa|up_7|CP018038.1_2952919_2955202_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|208aa|up_6|CP018038.1_2955374_2955998_+	pfam16970, FimA, Type-1 fimbrial protein, A	NA|301aa|up_5|CP018038.1_2956144_2957047_+	pfam00665, rve, Integrase core domain	NA|185aa|up_4|CP018038.1_2957093_2957648_-	PRK01885, greB, transcription elongation factor GreB; Reviewed	NA|282aa|up_3|CP018038.1_2957715_2958561_-	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|323aa|up_2|CP018038.1_2958630_2959599_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|1298aa|up_1|CP018038.1_2963294_2967188_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|59aa|up_0|CP018038.1_2967511_2967688_-	NA	NA|1077aa|down_0|CP018038.1_2967956_2971187_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|276aa|down_1|CP018038.1_2971468_2972296_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|232aa|down_2|CP018038.1_2972329_2973025_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|411aa|down_3|CP018038.1_2973017_2974250_-	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|314aa|down_4|CP018038.1_2974343_2975285_+	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown]	NA|567aa|down_5|CP018038.1_2975266_2976967_+	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|311aa|down_6|CP018038.1_2977241_2978174_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|252aa|down_7|CP018038.1_2978203_2978959_+	PRK07023, PRK07023, SDR family oxidoreductase	NA|507aa|down_8|CP018038.1_2978965_2980486_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|101aa|down_9|CP018038.1_2980528_2980831_+	NA
GCA_002859765.1_ASM285976v1	CP018038	Bordetella pertussis strain J207 chromosome, complete genome	3	3682479-3682572	3	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,cas3,DinG	Unclear	GTGCCTGTCCCGGCGGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG	NA,NA	NA|391aa|up_9|CP018038.1_3671285_3672458_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|326aa|up_8|CP018038.1_3672583_3673561_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_7|CP018038.1_3673571_3674543_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_6|CP018038.1_3674609_3675395_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|411aa|up_5|CP018038.1_3675387_3676620_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_4|CP018038.1_3676815_3677571_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_3|CP018038.1_3677681_3678200_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|467aa|up_2|CP018038.1_3679988_3681389_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|115aa|up_1|CP018038.1_3681488_3681833_+	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|157aa|up_0|CP018038.1_3681921_3682392_+	pfam00582, Usp, Universal stress protein family	NA|133aa|down_0|CP018038.1_3682802_3683201_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|301aa|down_1|CP018038.1_3683332_3684235_-	pfam00665, rve, Integrase core domain	DEDDh|245aa|down_2|CP018038.1_3686727_3687462_+	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional	NA|60aa|down_3|CP018038.1_3687871_3688051_+	pfam04391, DUF533, Protein of unknown function (DUF533)	NA|438aa|down_4|CP018038.1_3688241_3689555_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|504aa|down_5|CP018038.1_3689570_3691082_-	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|402aa|down_6|CP018038.1_3691078_3692284_-	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|326aa|down_7|CP018038.1_3692479_3693457_-	pfam00665, rve, Integrase core domain	NA|165aa|down_8|CP018038.1_3693549_3694044_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|353aa|down_9|CP018038.1_3694173_3695232_+	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1
GCA_002859765.1_ASM285976v1	CP018038	Bordetella pertussis strain J207 chromosome, complete genome	4	3863931-3864015	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG	Orphan	CTGTCCCCGCGGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG	NA,NA	NA|585aa|up_9|CP018038.1_3851888_3853643_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|300aa|up_8|CP018038.1_3853749_3854649_+	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|328aa|up_7|CP018038.1_3854713_3855697_-	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|327aa|up_6|CP018038.1_3855832_3856813_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|464aa|up_5|CP018038.1_3856829_3858221_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|179aa|up_4|CP018038.1_3858372_3858909_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|462aa|up_3|CP018038.1_3858839_3860225_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|207aa|up_2|CP018038.1_3860367_3860988_-	PRK10847, PRK10847, DedA family protein	NA|630aa|up_1|CP018038.1_3861092_3862982_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|314aa|up_0|CP018038.1_3862978_3863920_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|350aa|down_0|CP018038.1_3864025_3865075_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|234aa|down_1|CP018038.1_3865327_3866029_+	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|233aa|down_2|CP018038.1_3866025_3866724_+	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|452aa|down_3|CP018038.1_3866724_3868080_+	TIGR01942, pcnB, poly(A) polymerase	NA|164aa|down_4|CP018038.1_3868076_3868568_+	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	NA|319aa|down_5|CP018038.1_3868586_3869543_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|420aa|down_6|CP018038.1_3870953_3872213_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|348aa|down_7|CP018038.1_3873226_3874270_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|248aa|down_8|CP018038.1_3874313_3875057_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|252aa|down_9|CP018038.1_3875073_3875829_-	PRK15461, PRK15461, sulfolactaldehyde 3-reductase
