assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002886195.1_ASM288619v1	CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	8	2061109-2062209	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGCNCCGCCGNNNCC	20	0	0	NA	NA	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|222aa|up_2|CP025595.1_2057488_2058154_+,NA	NA|410aa|up_9|CP025595.1_2049881_2051111_+	pfam00823, PPE, PPE family	NA|469aa|up_8|CP025595.1_2051242_2052649_+	pfam00823, PPE, PPE family	NA|119aa|up_7|CP025595.1_2052893_2053250_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|235aa|up_6|CP025595.1_2053403_2054108_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|401aa|up_5|CP025595.1_2054117_2055320_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|144aa|up_4|CP025595.1_2055641_2056073_-	pfam13827, DUF4189, Domain of unknown function (DUF4189)	NA|301aa|up_3|CP025595.1_2056481_2057384_+	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|222aa|up_2|CP025595.1_2057488_2058154_+	NA	NA|235aa|up_1|CP025595.1_2058216_2058921_+	pfam13305, WHG, WHG domain	NA|488aa|up_0|CP025595.1_2059555_2061019_+	PRK07121, PRK07121, FAD-binding protein	NA|640aa|down_0|CP025595.1_2062760_2064680_-	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|548aa|down_1|CP025595.1_2064750_2066394_+	PRK05858, PRK05858, acetolactate synthase	NA|809aa|down_2|CP025595.1_2066408_2068835_+	PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed	NA|210aa|down_3|CP025595.1_2069031_2069661_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|308aa|down_4|CP025595.1_2069653_2070577_+	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_5|CP025595.1_2070638_2070971_+	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown]	NA|293aa|down_6|CP025595.1_2070987_2071866_+	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|135aa|down_7|CP025595.1_2071903_2072308_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|163aa|down_8|CP025595.1_2072547_2073036_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|248aa|down_9|CP025595.1_2073032_2073776_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators
GCA_002886195.1_ASM288619v1	CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	12	3119172-3120526	2,7,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-C,Type III-D,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	16,17,18	18	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_7|CP025595.1_3112853_3113258_+,NA|64aa|up_6|CP025595.1_3113254_3113446_+,NA|86aa|up_4|CP025595.1_3115032_3115290_+,NA|104aa|up_3|CP025595.1_3115394_3115706_+,NA|203aa|up_2|CP025595.1_3116125_3116734_+,NA	NA|92aa|up_9|CP025595.1_3112000_3112276_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_8|CP025595.1_3112415_3112781_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_7|CP025595.1_3112853_3113258_+	NA	NA|64aa|up_6|CP025595.1_3113254_3113446_+	NA	NA|385aa|up_5|CP025595.1_3113644_3114799_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|CP025595.1_3115032_3115290_+	NA	NA|104aa|up_3|CP025595.1_3115394_3115706_+	NA	NA|203aa|up_2|CP025595.1_3116125_3116734_+	NA	NA|470aa|up_1|CP025595.1_3116804_3118214_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|CP025595.1_3118210_3119023_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|CP025595.1_3120552_3121814_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|CP025595.1_3123616_3123958_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|CP025595.1_3123958_3124975_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|CP025595.1_3124987_3126136_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|CP025595.1_3126231_3127359_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|CP025595.1_3127355_3128264_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|CP025595.1_3128244_3128955_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|CP025595.1_3128964_3129339_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|CP025595.1_3129335_3131774_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_9|CP025595.1_3131770_3132715_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCA_002886195.1_ASM288619v1	CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	13	3121849-3123568	8,6,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-C,Type III-D,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_8|CP025595.1_3112853_3113258_+,NA|64aa|up_7|CP025595.1_3113254_3113446_+,NA|86aa|up_5|CP025595.1_3115032_3115290_+,NA|104aa|up_4|CP025595.1_3115394_3115706_+,NA|203aa|up_3|CP025595.1_3116125_3116734_+,NA	NA|122aa|up_9|CP025595.1_3112415_3112781_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_8|CP025595.1_3112853_3113258_+	NA	NA|64aa|up_7|CP025595.1_3113254_3113446_+	NA	NA|385aa|up_6|CP025595.1_3113644_3114799_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|CP025595.1_3115032_3115290_+	NA	NA|104aa|up_4|CP025595.1_3115394_3115706_+	NA	NA|203aa|up_3|CP025595.1_3116125_3116734_+	NA	NA|470aa|up_2|CP025595.1_3116804_3118214_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|CP025595.1_3118210_3119023_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|CP025595.1_3120552_3121814_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|CP025595.1_3123616_3123958_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|CP025595.1_3123958_3124975_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|CP025595.1_3124987_3126136_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|CP025595.1_3126231_3127359_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|CP025595.1_3127355_3128264_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|CP025595.1_3128244_3128955_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|CP025595.1_3128964_3129339_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|CP025595.1_3129335_3131774_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|CP025595.1_3131770_3132715_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|CP025595.1_3132892_3133438_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_002886195.1_ASM288619v1	CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	14	3740687-3741228	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|160aa|up_9|CP025595.1_3720760_3721240_+,NA|164aa|down_2|CP025595.1_3753214_3753706_-,NA|79aa|down_5|CP025595.1_3755320_3755557_-	NA|160aa|up_9|CP025595.1_3720760_3721240_+	NA	NA|147aa|up_8|CP025595.1_3721258_3721699_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|CP025595.1_3721732_3722602_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|CP025595.1_3722622_3723633_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|CP025595.1_3723917_3724550_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|CP025595.1_3724616_3725846_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|CP025595.1_3726128_3727478_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|CP025595.1_3727489_3728629_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|CP025595.1_3728625_3729357_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|CP025595.1_3729365_3736937_-	pfam00823, PPE, PPE family	NA|86aa|down_0|CP025595.1_3743190_3743448_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|CP025595.1_3743703_3753177_-	pfam00823, PPE, PPE family	NA|164aa|down_2|CP025595.1_3753214_3753706_-	NA	NA|149aa|down_3|CP025595.1_3753802_3754249_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|down_4|CP025595.1_3754285_3755104_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|79aa|down_5|CP025595.1_3755320_3755557_-	NA	NA|3717aa|down_6|CP025595.1_3755944_3767095_-	pfam00823, PPE, PPE family	NA|265aa|down_7|CP025595.1_3767338_3768133_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_8|CP025595.1_3768214_3768586_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_9|CP025595.1_3768483_3768894_-	pfam01565, FAD_binding_4, FAD binding domain
GCA_002886195.1_ASM288619v1	CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	15	4110648-4110736	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|65aa|up_9|CP025595.1_4099339_4099534_+,NA|257aa|up_7|CP025595.1_4101234_4102005_-,NA|90aa|up_2|CP025595.1_4107226_4107496_+,NA|233aa|up_0|CP025595.1_4109752_4110451_-,NA|126aa|down_6|CP025595.1_4115971_4116349_+	NA|65aa|up_9|CP025595.1_4099339_4099534_+	NA	NA|288aa|up_8|CP025595.1_4099616_4100480_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_7|CP025595.1_4101234_4102005_-	NA	NA|549aa|up_6|CP025595.1_4102001_4103648_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|267aa|up_5|CP025595.1_4103644_4104445_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_4|CP025595.1_4104500_4105427_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_3|CP025595.1_4105428_4107054_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|90aa|up_2|CP025595.1_4107226_4107496_+	NA	NA|652aa|up_1|CP025595.1_4107761_4109717_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|CP025595.1_4109752_4110451_-	NA	NA|173aa|down_0|CP025595.1_4110796_4111315_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|CP025595.1_4111315_4112299_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|CP025595.1_4112291_4113485_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|CP025595.1_4113490_4114312_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|CP025595.1_4114443_4115127_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|CP025595.1_4115126_4115864_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|CP025595.1_4115971_4116349_+	NA	NA|225aa|down_7|CP025595.1_4116447_4117122_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|CP025595.1_4117227_4118022_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|CP025595.1_4118028_4118484_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
