assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002887255.1_ASM288725v1	CP025602	Mycobacterium tuberculosis strain GG-109-10 chromosome, complete genome	1	338084-338306	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|CP025602.1_333158_333341_-,NA	NA|561aa|up_9|CP025602.1_324565_326248_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|CP025602.1_326264_328460_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|CP025602.1_328573_329707_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|CP025602.1_329703_330324_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|CP025602.1_330420_331002_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|CP025602.1_330931_331657_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|CP025602.1_331746_332667_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|CP025602.1_332706_333135_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|CP025602.1_333158_333341_-	NA	NA|615aa|up_0|CP025602.1_333435_335280_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|537aa|down_0|CP025602.1_339343_340954_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|CP025602.1_340977_341886_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|CP025602.1_342109_344005_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|CP025602.1_344001_345618_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|CP025602.1_345614_349607_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|CP025602.1_349603_349912_+	pfam00934, PE, PE family	NA|514aa|down_6|CP025602.1_349914_351456_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|CP025602.1_351504_351798_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|CP025602.1_351827_352118_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|CP025602.1_352128_353016_+	pfam14011, ESX-1_EspG, EspG family
GCA_002887255.1_ASM288725v1	CP025602	Mycobacterium tuberculosis strain GG-109-10 chromosome, complete genome	2	338389-338623	2	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGGCGCCGCCGGCGGCGCCGGCGGGGCCGGCGGCAACGGCGG	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|CP025602.1_333158_333341_-,NA	NA|561aa|up_9|CP025602.1_324565_326248_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|CP025602.1_326264_328460_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|CP025602.1_328573_329707_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|CP025602.1_329703_330324_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|CP025602.1_330420_331002_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|CP025602.1_330931_331657_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|CP025602.1_331746_332667_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|CP025602.1_332706_333135_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|CP025602.1_333158_333341_-	NA	NA|615aa|up_0|CP025602.1_333435_335280_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|537aa|down_0|CP025602.1_339343_340954_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|CP025602.1_340977_341886_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|CP025602.1_342109_344005_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|CP025602.1_344001_345618_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|CP025602.1_345614_349607_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|CP025602.1_349603_349912_+	pfam00934, PE, PE family	NA|514aa|down_6|CP025602.1_349914_351456_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|CP025602.1_351504_351798_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|CP025602.1_351827_352118_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|CP025602.1_352128_353016_+	pfam14011, ESX-1_EspG, EspG family
GCA_002887255.1_ASM288725v1	CP025602	Mycobacterium tuberculosis strain GG-109-10 chromosome, complete genome	13	3119147-3120501	6,6,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-A,Type III-D,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-B,TypeIII-A,TypeIII-D,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_7|CP025602.1_3112828_3113233_+,NA|64aa|up_6|CP025602.1_3113229_3113421_+,NA|86aa|up_4|CP025602.1_3115007_3115265_+,NA|104aa|up_3|CP025602.1_3115369_3115681_+,NA|203aa|up_2|CP025602.1_3116100_3116709_+,NA	NA|92aa|up_9|CP025602.1_3111975_3112251_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_8|CP025602.1_3112390_3112756_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_7|CP025602.1_3112828_3113233_+	NA	NA|64aa|up_6|CP025602.1_3113229_3113421_+	NA	NA|385aa|up_5|CP025602.1_3113619_3114774_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|CP025602.1_3115007_3115265_+	NA	NA|104aa|up_3|CP025602.1_3115369_3115681_+	NA	NA|203aa|up_2|CP025602.1_3116100_3116709_+	NA	NA|470aa|up_1|CP025602.1_3116779_3118189_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|CP025602.1_3118185_3118998_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|CP025602.1_3120527_3121789_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|CP025602.1_3123591_3123933_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|CP025602.1_3123933_3124950_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|CP025602.1_3124962_3126111_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|CP025602.1_3126206_3127334_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|CP025602.1_3127330_3128239_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|CP025602.1_3128219_3128930_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|CP025602.1_3128939_3129314_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|CP025602.1_3129310_3131749_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_9|CP025602.1_3131745_3132690_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCA_002887255.1_ASM288725v1	CP025602	Mycobacterium tuberculosis strain GG-109-10 chromosome, complete genome	14	3121824-3123543	7,4,7	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-A,Type III-D,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-B,TypeIII-A,TypeIII-D,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_8|CP025602.1_3112828_3113233_+,NA|64aa|up_7|CP025602.1_3113229_3113421_+,NA|86aa|up_5|CP025602.1_3115007_3115265_+,NA|104aa|up_4|CP025602.1_3115369_3115681_+,NA|203aa|up_3|CP025602.1_3116100_3116709_+,NA	NA|122aa|up_9|CP025602.1_3112390_3112756_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_8|CP025602.1_3112828_3113233_+	NA	NA|64aa|up_7|CP025602.1_3113229_3113421_+	NA	NA|385aa|up_6|CP025602.1_3113619_3114774_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|CP025602.1_3115007_3115265_+	NA	NA|104aa|up_4|CP025602.1_3115369_3115681_+	NA	NA|203aa|up_3|CP025602.1_3116100_3116709_+	NA	NA|470aa|up_2|CP025602.1_3116779_3118189_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|CP025602.1_3118185_3118998_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|CP025602.1_3120527_3121789_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|CP025602.1_3123591_3123933_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|CP025602.1_3123933_3124950_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|CP025602.1_3124962_3126111_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|CP025602.1_3126206_3127334_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|CP025602.1_3127330_3128239_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|CP025602.1_3128219_3128930_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|CP025602.1_3128939_3129314_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|CP025602.1_3129310_3131749_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|CP025602.1_3131745_3132690_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|CP025602.1_3132867_3133413_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_002887255.1_ASM288725v1	CP025602	Mycobacterium tuberculosis strain GG-109-10 chromosome, complete genome	15	3740663-3741204	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|160aa|up_9|CP025602.1_3720736_3721216_+,NA|164aa|down_2|CP025602.1_3753190_3753682_-,NA|79aa|down_5|CP025602.1_3755296_3755533_-	NA|160aa|up_9|CP025602.1_3720736_3721216_+	NA	NA|147aa|up_8|CP025602.1_3721234_3721675_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|CP025602.1_3721708_3722578_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|CP025602.1_3722598_3723609_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|CP025602.1_3723893_3724526_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|CP025602.1_3724592_3725822_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|CP025602.1_3726104_3727454_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|CP025602.1_3727465_3728605_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|CP025602.1_3728601_3729333_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|CP025602.1_3729341_3736913_-	pfam00823, PPE, PPE family	NA|86aa|down_0|CP025602.1_3743166_3743424_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|CP025602.1_3743679_3753153_-	pfam00823, PPE, PPE family	NA|164aa|down_2|CP025602.1_3753190_3753682_-	NA	NA|149aa|down_3|CP025602.1_3753778_3754225_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|down_4|CP025602.1_3754261_3755080_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|79aa|down_5|CP025602.1_3755296_3755533_-	NA	NA|3717aa|down_6|CP025602.1_3755920_3767071_-	pfam00823, PPE, PPE family	NA|265aa|down_7|CP025602.1_3767314_3768109_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_8|CP025602.1_3768190_3768562_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_9|CP025602.1_3768459_3768870_-	pfam01565, FAD_binding_4, FAD binding domain
GCA_002887255.1_ASM288725v1	CP025602	Mycobacterium tuberculosis strain GG-109-10 chromosome, complete genome	16	3948296-3950047	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948887-3948922|3948887-3948922|3948887-3948922|3948887-3948922|3948887-3948922|3949778-3949804|3949778-3949804|3949778-3949804|3949778-3949804	CP025602.1_3946986-3947021|CP025602.1_3947345-3947380|CP025602.1_3947936-3947971|CP025602.1_3948287-3948322|CP025602.1_3932777-3932812|CP025602.1_361973-361999|CP025602.1_3941173-3941199|CP025602.1_3941509-3941535|CP025602.1_3941854-3941880	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|73aa|down_0|CP025602.1_3950540_3950759_-,NA|280aa|down_3|CP025602.1_3953362_3954202_+	NA|64aa|up_9|CP025602.1_3922037_3922229_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_8|CP025602.1_3922443_3923646_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_7|CP025602.1_3923670_3924792_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_6|CP025602.1_3924862_3926371_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_5|CP025602.1_3926541_3930687_+	pfam00934, PE, PE family	NA|1883aa|up_4|CP025602.1_3930977_3936626_+	pfam00934, PE, PE family	NA|516aa|up_3|CP025602.1_3936792_3938340_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_2|CP025602.1_3938336_3939173_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|1782aa|up_1|CP025602.1_3939532_3944878_+	pfam00934, PE, PE family	NA|219aa|up_0|CP025602.1_3945006_3945663_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|73aa|down_0|CP025602.1_3950540_3950759_-	NA	NA|549aa|down_1|CP025602.1_3950755_3952402_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_2|CP025602.1_3952475_3953267_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_3|CP025602.1_3953362_3954202_+	NA	NA|399aa|down_4|CP025602.1_3954256_3955453_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_5|CP025602.1_3955481_3956192_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_6|CP025602.1_3956256_3957300_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_7|CP025602.1_3957452_3958364_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_8|CP025602.1_3958379_3959444_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_9|CP025602.1_3959460_3960645_+	PRK08313, PRK08313, thiolase domain-containing protein
GCA_002887255.1_ASM288725v1	CP025602	Mycobacterium tuberculosis strain GG-109-10 chromosome, complete genome	17	4110605-4110693	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|65aa|up_9|CP025602.1_4099296_4099491_+,NA|257aa|up_7|CP025602.1_4101191_4101962_-,NA|90aa|up_2|CP025602.1_4107183_4107453_+,NA|233aa|up_0|CP025602.1_4109709_4110408_-,NA|126aa|down_6|CP025602.1_4115928_4116306_+	NA|65aa|up_9|CP025602.1_4099296_4099491_+	NA	NA|288aa|up_8|CP025602.1_4099573_4100437_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_7|CP025602.1_4101191_4101962_-	NA	NA|549aa|up_6|CP025602.1_4101958_4103605_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|267aa|up_5|CP025602.1_4103601_4104402_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_4|CP025602.1_4104457_4105384_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_3|CP025602.1_4105385_4107011_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|90aa|up_2|CP025602.1_4107183_4107453_+	NA	NA|652aa|up_1|CP025602.1_4107718_4109674_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|CP025602.1_4109709_4110408_-	NA	NA|173aa|down_0|CP025602.1_4110753_4111272_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|CP025602.1_4111272_4112256_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|CP025602.1_4112248_4113442_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|CP025602.1_4113447_4114269_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|CP025602.1_4114400_4115084_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|CP025602.1_4115083_4115821_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|CP025602.1_4115928_4116306_+	NA	NA|225aa|down_7|CP025602.1_4116404_4117079_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|CP025602.1_4117184_4117979_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|CP025602.1_4117985_4118441_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
