The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	0	64057	4314502	tRNA,transposase,protease	Natrialba_phage(12.5%)	59	NA	NA
AUR72311.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AUR72312.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AUR72313.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AUR72314.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AUR72315.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AUR72316.1|5124_5910_+	L-asparaginase	NA	NA	NA	NA	NA
AUR72317.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72318.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AUR72319.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AUR72320.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AUR72321.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AUR72322.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AUR72323.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AUR72324.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AUR72325.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AUR72326.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AUR75872.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AUR72327.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72328.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AUR72329.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUR72330.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72331.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AUR72332.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72333.1|29141_30368_-	thiolase	NA	NA	NA	NA	NA
AUR72334.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AUR75873.1|31069_31978_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR72335.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR72336.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AUR72337.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72338.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AUR72339.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AUR72340.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AUR72341.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AUR72342.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUR72343.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AUR72344.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUR72345.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AUR72346.1|43272_43677_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72347.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72348.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72349.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUR72350.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72351.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AUR72352.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AUR72353.1|49963_50155_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72354.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72355.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AUR72356.1|52502_53567_+	porin	NA	NA	NA	NA	NA
AUR72357.1|53624_54359_-	glutamate racemase	NA	NA	NA	NA	NA
AUR72358.1|54364_54955_-	glutamate/aspartate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AUR72359.1|54979_55669_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR72360.1|55665_56427_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR72361.1|56506_57406_-	glutamate/aspartate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR72362.1|57499_58450_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72363.1|59250_60477_-	serine kinase HipA	NA	NA	NA	NA	NA
AUR72364.1|60476_60896_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR72365.1|61079_62021_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75874.1|62444_63281_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72366.1|63475_64057_-|protease	protease	protease	NA	NA	NA	NA
>prophage 2
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	185342	243846	4314502	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
AUR72479.1|185342_186293_+|transposase	IS481 family transposase IS481	transposase	NA	NA	NA	NA
AUR72480.1|186289_188164_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AUR72481.1|189511_190216_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AUR72482.1|190212_191319_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AUR72483.1|191580_192174_-	sugar transferase	NA	NA	NA	NA	NA
AUR72484.1|192170_193403_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AUR72485.1|193420_194680_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AUR72486.1|194703_195792_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AUR72487.1|195799_196900_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AUR72488.1|196903_197479_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUR72489.1|197482_198535_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AUR72490.1|198665_199673_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AUR72491.1|199674_200961_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AUR72492.1|200977_201133_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72493.1|201157_201961_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AUR72494.1|201957_202824_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AUR72495.1|202892_204029_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR72496.1|204028_204868_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AUR72497.1|204981_205932_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72498.1|206849_207452_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72499.1|207481_208135_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUR72500.1|208267_209524_+	peptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AUR72501.1|209526_210471_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUR72502.1|210546_210822_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AUR72503.1|210829_211492_+	octanoyltransferase	NA	NA	NA	NA	NA
AUR72504.1|211553_212555_+	lipoyl synthase	NA	NA	NA	NA	NA
AUR72505.1|212569_213118_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AUR72506.1|213175_214072_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AUR72507.1|214068_215130_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AUR72508.1|215165_216116_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72509.1|217015_218209_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUR72510.1|218290_218920_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AUR72511.1|218981_219665_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AUR72512.1|219674_221357_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AUR75882.1|221644_221992_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AUR72513.1|222082_222400_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72514.1|222682_223699_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR72515.1|223774_224575_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR72516.1|224571_225447_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AUR72517.1|225457_226750_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR72518.1|226792_227833_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AUR72519.1|227938_228760_-	phosphodiesterase	NA	NA	NA	NA	NA
AUR72520.1|228860_229811_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72521.1|229909_230815_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
AUR72522.1|230811_231645_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR75883.1|232481_233492_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR75884.1|233488_233878_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72523.1|234771_236025_+	amidase	NA	NA	NA	NA	NA
AUR72524.1|236115_237816_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AUR72525.1|238242_238890_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72526.1|238888_240328_+	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AUR72527.1|240420_240723_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AUR72528.1|240750_241629_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR72529.1|242895_243846_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	272629	379969	4314502	integrase,tRNA,transposase	Pseudomonas_phage(10.0%)	98	337321:337340	360945:360964
AUR72552.1|272629_273580_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72553.1|275023_275926_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72554.1|275903_276533_-	LemA family protein	NA	NA	NA	NA	NA
AUR75887.1|276863_278246_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AUR72555.1|278279_278909_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AUR72556.1|278957_280565_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AUR72557.1|280589_281273_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75888.1|281354_281831_-	bacterioferritin	NA	NA	NA	NA	NA
AUR72558.1|282037_282988_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72559.1|283086_284037_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72560.1|285152_285680_+	lipoprotein	NA	NA	NA	NA	NA
AUR72561.1|285771_286587_+	lipoprotein	NA	NA	NA	NA	NA
AUR72562.1|286647_287382_+	sulfurtransferase	NA	NA	NA	NA	NA
AUR72563.1|287419_289498_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AUR72564.1|289747_290020_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72565.1|290118_291207_+	ATP-binding protein	NA	NA	NA	NA	NA
AUR72566.1|291210_293115_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AUR72567.1|293111_296786_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AUR72568.1|296846_297410_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AUR72569.1|297417_297840_-	glyoxalase	NA	NA	NA	NA	NA
AUR72570.1|297867_298287_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AUR75889.1|298315_298762_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AUR72571.1|298888_299386_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72572.1|299540_301811_+	lysine decarboxylase	NA	NA	NA	NA	NA
AUR72573.1|301859_303092_+	aminoacetone oxidase family FAD-binding enzyme	NA	NA	NA	NA	NA
AUR72574.1|303190_304141_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72575.1|304186_304879_+	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AUR72576.1|304875_305769_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AUR72577.1|306163_307264_+	aminomethyltransferase	NA	NA	NA	NA	NA
AUR72578.1|307345_307720_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AUR72579.1|307779_310644_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AUR72580.1|310788_311529_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AUR72581.1|311598_312810_+	CoA transferase	NA	NA	NA	NA	NA
AUR72582.1|312838_313807_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR72583.1|314420_315371_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72584.1|315469_316420_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72585.1|316968_317343_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUR72586.1|317417_318476_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUR72587.1|318499_319450_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72588.1|321006_321852_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUR72589.1|321939_323103_-	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AUR75890.1|323521_324493_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR72590.1|324531_325959_-	amidase	NA	NA	NA	NA	NA
AUR72591.1|326078_326870_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUR72592.1|326988_329442_-	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AUR72593.1|329536_330652_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AUR75891.1|330648_332058_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AUR72594.1|332463_332598_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
AUR72595.1|332693_333065_+	ribonuclease P protein component	NA	NA	NA	NA	NA
AUR72596.1|333061_333334_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AUR72597.1|333382_335074_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
AUR72598.1|335304_336255_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72599.1|336712_337636_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
337321:337340	attL	GCCGCTGACCAACCAGCGCG	NA	NA	NA	NA
AUR72600.1|337644_338043_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72601.1|338284_340255_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72602.1|341741_342731_+|integrase	integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AUR72603.1|342727_342928_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AUR72604.1|342928_343048_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72605.1|343040_343403_-	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AUR72606.1|343392_344580_-	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AUR72607.1|344613_345141_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72608.1|345198_345846_-	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AUR72609.1|345842_346829_-	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AUR72610.1|346832_347015_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72611.1|347011_347389_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72612.1|347622_348090_-	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AUR72613.1|348125_349076_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72614.1|349174_349417_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72615.1|349583_350225_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72616.1|350328_350589_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72617.1|350704_351655_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72618.1|351651_352650_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72619.1|352692_353196_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUR72620.1|353199_354090_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUR72621.1|354312_355476_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR72622.1|355572_356493_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR72623.1|356496_357462_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR72624.1|357458_358253_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
AUR72625.1|358246_358951_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
AUR72626.1|362314_363178_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
360945:360964	attR	GCCGCTGACCAACCAGCGCG	NA	NA	NA	NA
AUR72627.1|363180_364350_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUR72628.1|364390_366040_+	2-aminobenzoate-CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
AUR72629.1|366041_366476_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA	NA
AUR72630.1|366500_366902_+	RidA family protein	NA	NA	NA	NA	NA
AUR72631.1|366995_368621_-	DUF342 domain-containing protein	NA	NA	NA	NA	NA
AUR72632.1|368860_370144_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
AUR72633.1|370160_370814_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
AUR72634.1|370810_371659_-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AUR75892.1|371775_371940_+	rubredoxin	NA	NA	NA	NA	NA
AUR72635.1|371955_372633_+	DUF179 domain-containing protein	NA	NA	NA	NA	NA
AUR72636.1|372625_373027_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
AUR72637.1|373040_373994_+	aspartate carbamoyltransferase	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
AUR72638.1|373990_375166_+	dihydroorotase	NA	NA	NA	NA	NA
AUR72639.1|375285_376026_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUR72640.1|376062_376896_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	NA	NA	NA	NA
AUR72641.1|376892_378161_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AUR72642.1|378167_378896_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
AUR72643.1|379018_379969_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	404353	463822	4314502	tRNA,transposase	Streptococcus_phage(50.0%)	55	NA	NA
AUR72668.1|404353_405304_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72669.1|405415_406138_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR72670.1|406236_406980_-	anion permease	NA	NA	NA	NA	NA
AUR72671.1|407210_408719_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72672.1|408838_409570_+	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
AUR72673.1|409614_411075_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AUR72674.1|411099_411579_+	heme-binding protein	NA	NA	NA	NA	NA
AUR72675.1|411597_412608_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AUR72676.1|412822_413563_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR72677.1|413754_414744_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72678.1|414740_415691_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72679.1|415789_416740_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72680.1|417788_418427_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72681.1|418463_419858_-	glutamate dehydrogenase	NA	NA	NA	NA	NA
AUR72682.1|420229_421018_-	endonuclease	NA	M1PSC0	Streptococcus_phage	25.7	1.2e-19
AUR72683.1|421122_421830_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
AUR72684.1|421943_423398_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B	tRNA	NA	NA	NA	NA
AUR72685.1|423400_424939_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A	tRNA	NA	NA	NA	NA
AUR72686.1|424941_425250_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AUR72687.1|425480_426524_+	rod shape-determining protein	NA	NA	NA	NA	NA
AUR72688.1|426612_427497_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
AUR72689.1|427483_428047_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
AUR72690.1|428060_430013_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
AUR72691.1|430009_431146_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
AUR72692.1|431171_432227_-	lactate dehydrogenase	NA	NA	NA	NA	NA
AUR72693.1|432237_433731_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72694.1|433943_434519_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
AUR72695.1|434568_435315_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
AUR72696.1|435314_436217_-	acetylglutamate kinase	NA	NA	NA	NA	NA
AUR72697.1|436478_437267_+	methionine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR72698.1|437407_437899_-	thioredoxin	NA	NA	NA	NA	NA
AUR72699.1|437895_438639_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AUR72700.1|438635_439238_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.7e-17
AUR72701.1|439838_440777_+	rRNA (cytidine-2'-O-)-methyltransferase	NA	NA	NA	NA	NA
AUR72702.1|440773_441346_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
AUR72703.1|441342_442293_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72704.1|442429_443347_+	reductase	NA	NA	NA	NA	NA
AUR72705.1|443343_443592_+	NrdH-redoxin	NA	NA	NA	NA	NA
AUR72706.1|443588_444794_+	CoA transferase	NA	NA	NA	NA	NA
AUR72707.1|444866_445862_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR72708.1|445884_447105_-	CoA transferase	NA	NA	NA	NA	NA
AUR72709.1|447101_447746_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72710.1|449476_450286_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUR75895.1|450503_451544_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AUR72711.1|451642_452626_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72712.1|452552_453254_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR72713.1|453302_454073_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AUR72714.1|454069_455311_-	CoA transferase	NA	NA	NA	NA	NA
AUR72715.1|455415_457122_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AUR72716.1|457118_458015_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR72717.1|458055_459645_-	sulfurtransferase	NA	NA	NA	NA	NA
AUR72718.1|459694_460687_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR72719.1|460755_461355_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75896.1|461815_462793_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72720.1|462871_463822_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	567764	677108	4314502	tRNA,transposase	Acinetobacter_phage(27.27%)	90	NA	NA
AUR72804.1|567764_568715_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72805.1|568701_568890_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72806.1|568837_569245_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR72807.1|569317_571513_+	DNA methylase	NA	NA	NA	NA	NA
AUR72808.1|571734_572685_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72809.1|573300_574272_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72810.1|574391_576836_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AUR72811.1|576851_577442_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AUR72812.1|577685_578636_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72813.1|578793_580059_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AUR72814.1|580092_581190_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AUR72815.1|581844_582795_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72816.1|582795_583365_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AUR72817.1|583432_584248_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR72818.1|586112_587054_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR72819.1|587053_587938_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR72820.1|587941_589594_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
AUR72821.1|589633_591031_+	amidase	NA	NA	NA	NA	NA
AUR72822.1|591072_592452_+	aminotransferase	NA	NA	NA	NA	NA
AUR72823.1|592491_592710_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72824.1|593050_593923_+	carboxyvinyl-carboxyphosphonate phosphorylmutase	NA	NA	NA	NA	NA
AUR72825.1|594082_595033_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72826.1|595764_596142_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AUR72827.1|596126_596828_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72828.1|596971_597664_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AUR72829.1|597663_598767_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AUR72830.1|598876_601249_+	LPS biosynthesis protein	NA	NA	NA	NA	NA
AUR72831.1|601245_602805_+	chaperone SurA	NA	NA	NA	NA	NA
AUR72832.1|602829_603627_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AUR72833.1|603658_604804_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AUR72834.1|604908_606351_+	pyruvate kinase	NA	NA	NA	NA	NA
AUR75901.1|606353_607442_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72835.1|609720_610671_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72836.1|610762_611713_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72837.1|612053_613004_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72838.1|615327_616476_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUR72839.1|616520_617183_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AUR72840.1|617296_618289_+	nitronate monooxygenase	NA	NA	NA	NA	NA
AUR72841.1|618285_619023_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR72842.1|619102_619924_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR72843.1|620012_620876_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AUR72844.1|621002_621239_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72845.1|623213_624257_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AUR72846.1|624315_625293_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR72847.1|625300_626221_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR72848.1|626217_627918_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AUR72849.1|627920_628826_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUR72850.1|628869_630003_+	peptidase	NA	NA	NA	NA	NA
AUR72851.1|630132_631083_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72852.1|631181_633251_-	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
AUR72853.1|633293_635396_-	primosomal protein N'	NA	NA	NA	NA	NA
AUR72854.1|635702_636779_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AUR75902.1|636854_637739_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72855.1|637921_638344_-	ATP synthase epsilon chain	NA	NA	NA	NA	NA
AUR72856.1|638353_639754_-	ATP synthase subunit beta	NA	NA	NA	NA	NA
AUR72857.1|639796_640702_-	ATP synthase subunit gamma	NA	NA	NA	NA	NA
AUR72858.1|640800_642342_-	ATP synthase subunit alpha	NA	NA	NA	NA	NA
AUR72859.1|642376_642916_-	ATP synthase subunit delta	NA	NA	NA	NA	NA
AUR72860.1|642928_643399_-	ATP synthase subunit B	NA	NA	NA	NA	NA
AUR72861.1|643536_643779_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AUR72862.1|643895_644777_-	ATP synthase subunit A	NA	NA	NA	NA	NA
AUR75903.1|644849_645170_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR72863.1|646021_646972_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72864.1|648295_649072_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR72865.1|649106_650879_+	peptidase M61	NA	NA	NA	NA	NA
AUR72866.1|650880_651783_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AUR72867.1|651907_652267_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AUR72868.1|652298_653261_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AUR72869.1|653359_654310_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72870.1|654322_655258_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AUR72871.1|655317_656157_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AUR72872.1|656153_657323_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AUR72873.1|657319_658609_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72874.1|658651_659026_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AUR72875.1|659131_659869_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AUR72876.1|659876_660581_+	phosphoglycolate phosphatase, bacterial	NA	NA	NA	NA	NA
AUR72877.1|660844_662365_+	anthranilate synthase component I	NA	S4VNU7	Pandoravirus	32.0	3.1e-43
AUR72878.1|662420_662984_+	glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AUR72879.1|663002_664034_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AUR72880.1|664030_664819_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AUR72881.1|664994_665984_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72882.1|667740_668691_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72883.1|669913_670816_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR72884.1|670817_671672_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AUR72885.1|671718_672828_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUR72886.1|672838_673357_-	flavin reductase	NA	NA	NA	NA	NA
AUR72887.1|673386_674019_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUR72888.1|674090_674750_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AUR72889.1|674746_675967_-	MFS transporter	NA	NA	NA	NA	NA
AUR72890.1|676235_677108_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 6
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	681522	745355	4314502	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
AUR72893.1|681522_682539_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AUR72894.1|682810_683437_-	aminotransferase	NA	NA	NA	NA	NA
AUR72895.1|683492_684620_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AUR72896.1|684625_690343_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AUR72897.1|690626_690842_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72898.1|690910_691855_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AUR72899.1|692043_692979_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AUR72900.1|693096_694668_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR72901.1|694747_695956_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR72902.1|696453_697371_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AUR72903.1|699731_699953_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72904.1|700283_701300_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR72905.1|701384_701636_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AUR72906.1|701639_702455_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AUR72907.1|702567_703446_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AUR72908.1|703557_705321_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AUR72909.1|705436_706777_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUR72910.1|707846_709271_-	ATP-binding protein	NA	NA	NA	NA	NA
AUR72911.1|709270_709972_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AUR72912.1|711476_712427_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72913.1|712495_713494_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR72914.1|713498_714179_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72915.1|714316_714709_+	osmotically inducible protein OsmC	NA	NA	NA	NA	NA
AUR72916.1|714816_715833_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AUR72917.1|716072_716858_-	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUR72918.1|716952_718362_-	lytic transglycosylase	NA	NA	NA	NA	NA
AUR72919.1|718372_719173_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AUR72920.1|719193_719964_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUR72921.1|720006_720474_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AUR72922.1|720470_721421_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72923.1|723369_724248_-	fatty acid desaturase	NA	NA	NA	NA	NA
AUR72924.1|728506_729457_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72925.1|729453_730542_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72926.1|730577_731441_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR72927.1|732580_732970_-	DNA-binding protein	NA	NA	NA	NA	NA
AUR72928.1|732973_733756_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR72929.1|733789_734542_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUR72930.1|734850_735990_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR72931.1|735986_736778_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AUR72932.1|736774_737524_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AUR72933.1|737520_738393_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR72934.1|738392_739394_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR72935.1|739390_740554_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUR72936.1|740579_741263_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUR72937.1|741216_742551_+	CoA ligase	NA	NA	NA	NA	NA
AUR72938.1|742543_743638_+	CoA transferase	NA	NA	NA	NA	NA
AUR75906.1|744404_745355_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	764266	833447	4314502	integrase,tRNA,transposase,protease	Bacillus_phage(20.0%)	55	812452:812470	832340:832358
AUR72956.1|764266_765217_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72957.1|765315_766791_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AUR72958.1|768378_769266_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR72959.1|770095_771046_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR72960.1|771304_772870_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR75907.1|774647_775931_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AUR72961.1|776155_777613_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
AUR72962.1|777576_778080_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	2.4e-24
AUR72963.1|778104_779076_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
AUR72964.1|779128_779566_-	peroxiredoxin	NA	NA	NA	NA	NA
AUR72965.1|779689_780358_+	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA	NA
AUR72966.1|781086_782190_+	glycosyl transferase	NA	NA	NA	NA	NA
AUR72967.1|782295_783570_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AUR72968.1|783581_784607_+	LPS biosynthesis protein WbpP	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AUR72969.1|784608_785979_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72970.1|785979_787116_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AUR72971.1|787162_789088_+	asparagine synthetase B	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
AUR72972.1|789084_790206_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AUR72973.1|790202_791357_+	glycosyl transferase	NA	NA	NA	NA	NA
AUR72974.1|791353_792484_+	glycosyl transferase	NA	NA	NA	NA	NA
AUR72975.1|792491_794057_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AUR72976.1|794063_795446_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
AUR72977.1|795724_796336_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72978.1|796427_797843_+	oxidoreductase	NA	NA	NA	NA	NA
AUR72979.1|797860_798571_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUR72980.1|798567_799890_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUR72981.1|799969_801931_+	sulfatase	NA	NA	NA	NA	NA
AUR72982.1|802056_803370_-	fumarylacetoacetase	NA	NA	NA	NA	NA
AUR72983.1|803478_804777_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
AUR72984.1|804959_805868_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR72985.1|805877_806087_-	hypothetical protein	NA	NA	NA	NA	NA
AUR72986.1|806098_807778_-	oxidoreductase	NA	NA	NA	NA	NA
AUR72987.1|807879_808833_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AUR72988.1|808923_809751_-	formamidopyrimidine-DNA glycosylase	NA	NA	NA	NA	NA
AUR72989.1|809749_811636_+	hypothetical protein	NA	NA	NA	NA	NA
AUR72990.1|811632_812232_+	outer membrane lipoprotein LolB	NA	NA	NA	NA	NA
AUR72991.1|812280_813180_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
812452:812470	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AUR75908.1|813406_814339_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	36.0	2.7e-42
AUR72992.1|814461_815076_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
AUR72993.1|815153_815801_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AUR72994.1|815797_816580_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AUR72995.1|816652_817744_+	GTP-binding protein YchF	NA	NA	NA	NA	NA
AUR72996.1|818023_819151_+|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AUR72997.1|819492_820539_+	Fic family protein	NA	NA	NA	NA	NA
AUR72998.1|820546_820690_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AUR72999.1|820686_823806_+	restriction endonuclease	NA	NA	NA	NA	NA
AUR73000.1|823807_826759_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AUR73001.1|826774_827986_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AUR73002.1|827982_828183_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73003.1|828169_829120_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73004.1|829136_829631_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73005.1|829634_829892_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73006.1|829916_831347_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AUR73007.1|831416_831713_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	5.5e-05
AUR73008.1|832496_833447_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
832340:832358	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 9
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	948008	1012073	4314502	tRNA,transposase,protease	Pseudomonas_phage(30.0%)	57	NA	NA
AUR73093.1|948008_948959_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73094.1|949057_950008_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73095.1|950106_950970_-	shikimate dehydrogenase	NA	NA	NA	NA	NA
AUR73096.1|950966_951866_-	energy transducer TonB	NA	NA	NA	NA	NA
AUR73097.1|951903_953787_-	ribonuclease II	NA	NA	NA	NA	NA
AUR73098.1|953858_954452_-	esterase	NA	NA	NA	NA	NA
AUR73099.1|954462_955833_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
AUR73100.1|955915_956464_+	thioredoxin	NA	NA	NA	NA	NA
AUR73101.1|956542_956977_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
AUR73102.1|957066_957516_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA	NA
AUR73103.1|957525_958872_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AUR73104.1|959837_960935_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75920.1|960946_961888_+	carbohydrate kinase family protein	NA	NA	NA	NA	NA
AUR73105.1|962060_962564_+	lipoprotein	NA	NA	NA	NA	NA
AUR73106.1|962844_963084_+	acyl carrier protein	NA	NA	NA	NA	NA
AUR73107.1|964467_964593_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73108.1|964600_965728_+	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
AUR73109.1|965738_967202_+	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
AUR73110.1|967209_967785_-	YggT family protein	NA	NA	NA	NA	NA
AUR73111.1|967923_968451_-	histone	NA	NA	NA	NA	NA
AUR73112.1|968768_969965_-	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
AUR73113.1|969986_972914_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
AUR73114.1|973219_976282_-	pyruvate ferredoxin oxidoreductase	NA	NA	NA	NA	NA
AUR75921.1|976413_976671_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73115.1|976843_977296_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUR73116.1|977497_978007_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73117.1|978075_979263_+	MFS transporter	NA	NA	NA	NA	NA
AUR75922.1|979266_980712_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
AUR73118.1|980808_983268_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUR73119.1|983264_984215_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73120.1|984201_984420_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73121.1|984313_984988_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73122.1|985284_986781_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73123.1|986897_988286_+	ATP-dependent RNA helicase	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
AUR73124.1|988391_988781_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AUR73125.1|988792_989485_-	hydrolase	NA	NA	NA	NA	NA
AUR73126.1|989499_990336_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR73127.1|990338_991148_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
AUR73128.1|992404_993079_-	carboxylesterase	NA	NA	NA	NA	NA
AUR73129.1|993092_993644_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73130.1|993702_995067_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
AUR73131.1|995408_996506_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR73132.1|996801_997230_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
AUR73133.1|997239_997632_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
AUR73134.1|997820_998885_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AUR73135.1|998921_999668_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73136.1|999755_1000127_+	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
AUR73137.1|1000196_1001333_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
AUR73138.1|1001338_1002754_-	metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
AUR73139.1|1002845_1003796_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73140.1|1004063_1005293_+|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
AUR73141.1|1005328_1005985_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AUR73142.1|1006201_1007449_+	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
AUR73143.1|1007606_1008089_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
AUR73144.1|1009083_1009647_-	hydrolase	NA	NA	NA	NA	NA
AUR75923.1|1009852_1010977_+	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
AUR73145.1|1011122_1012073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	1044183	1112643	4314502	tRNA,transposase,protease	Staphylococcus_phage(28.57%)	54	NA	NA
AUR73177.1|1044183_1045134_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73178.1|1045232_1045604_-	DNA-binding protein	NA	NA	NA	NA	NA
AUR73179.1|1045728_1046559_+	hydrolase	NA	NA	NA	NA	NA
AUR73180.1|1046569_1048030_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
AUR73181.1|1048286_1049360_+	3-deoxy-7-phosphoheptulonate synthase	NA	A0A2I6UFP9	Klebsiella_phage	46.4	3.9e-77
AUR73182.1|1049381_1062035_-	peptidase C80	NA	A0A0R6PJK4	Moraxella_phage	30.5	1.2e-15
AUR73183.1|1062164_1063574_+	oxidoreductase	NA	NA	NA	NA	NA
AUR73184.1|1063708_1065208_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AUR73185.1|1065219_1066329_+	glycolate oxidase subunit GlcE	NA	NA	NA	NA	NA
AUR73186.1|1066361_1067591_+	glycolate oxidase iron-sulfur subunit	NA	NA	NA	NA	NA
AUR73187.1|1067581_1068493_-	ferric-enterobactin hydrolase	NA	NA	NA	NA	NA
AUR73188.1|1068495_1070709_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AUR73189.1|1070884_1071895_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUR75927.1|1071938_1073375_-	NAD synthetase	NA	NA	NA	NA	NA
AUR75928.1|1073371_1073494_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73190.1|1073691_1074810_-	NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha	NA	NA	NA	NA	NA
AUR73191.1|1075064_1075940_-	hydrolase	NA	NA	NA	NA	NA
AUR73192.1|1076000_1076987_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR73193.1|1077157_1078078_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	30.5	2.7e-26
AUR73194.1|1078090_1079206_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
AUR73195.1|1079306_1080125_+	anion permease	NA	NA	NA	NA	NA
AUR73196.1|1080222_1080834_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUR73197.1|1080948_1082370_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.3e-109
AUR73198.1|1082432_1082891_+	cytochrome C	NA	NA	NA	NA	NA
AUR73199.1|1082975_1083671_-	cytochrome B	NA	NA	NA	NA	NA
AUR73200.1|1083732_1084014_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73201.1|1084576_1085329_+	lipoprotein	NA	NA	NA	NA	NA
AUR73202.1|1085373_1086450_+	AI-2E family transporter	NA	NA	NA	NA	NA
AUR73203.1|1086446_1087397_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73204.1|1087499_1088162_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73205.1|1088264_1088675_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73206.1|1088779_1089781_+	amidase	NA	NA	NA	NA	NA
AUR73207.1|1089783_1090980_+	CoA transferase	NA	NA	NA	NA	NA
AUR73208.1|1091000_1091804_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR73209.1|1091884_1092181_+	histidine kinase	NA	NA	NA	NA	NA
AUR73210.1|1092211_1092775_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75929.1|1092815_1093673_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR73211.1|1093680_1094430_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AUR73212.1|1094451_1095324_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73213.1|1095352_1096132_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUR73214.1|1096165_1096963_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73215.1|1098414_1099587_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AUR73216.1|1099617_1100010_+	RidA family protein	NA	NA	NA	NA	NA
AUR73217.1|1100003_1100864_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR73218.1|1100867_1101830_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR75930.1|1102606_1103296_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AUR73219.1|1104156_1105107_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73220.1|1105205_1106156_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73221.1|1106268_1107138_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73222.1|1107208_1107904_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AUR73223.1|1107893_1108403_+|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
AUR73224.1|1108399_1109620_+	MFS transporter	NA	NA	NA	NA	NA
AUR73225.1|1109567_1110470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73226.1|1111356_1112643_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	1126014	1169486	4314502	transposase	uncultured_virus(20.0%)	41	NA	NA
AUR75932.1|1126014_1126965_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75933.1|1126946_1129436_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AUR73239.1|1129484_1130177_+	hydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AUR73240.1|1130249_1131449_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AUR73241.1|1131466_1132372_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73242.1|1132487_1133417_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUR73243.1|1133442_1134789_+	MFS transporter	NA	NA	NA	NA	NA
AUR75934.1|1134816_1135566_+	enoyl-ACP reductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AUR73244.1|1135579_1136362_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUR73245.1|1136554_1137505_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73246.1|1137566_1138712_-	porin	NA	NA	NA	NA	NA
AUR73247.1|1139188_1140025_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AUR73248.1|1140094_1141060_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73249.1|1141056_1142007_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73250.1|1141993_1142188_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73251.1|1142392_1142935_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73252.1|1143970_1144921_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73253.1|1145162_1145531_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73254.1|1145576_1146701_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75935.1|1147835_1148576_-	oxidoreductase	NA	NA	NA	NA	NA
AUR73255.1|1148679_1149300_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73256.1|1149301_1151410_-	AsmA family protein	NA	NA	NA	NA	NA
AUR73257.1|1151554_1152214_-	hydrolase	NA	NA	NA	NA	NA
AUR73258.1|1152245_1152710_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AUR73259.1|1152985_1153171_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73260.1|1153222_1153975_-	DNA-binding protein	NA	NA	NA	NA	NA
AUR73261.1|1153981_1155244_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR73262.1|1155285_1156524_-|transposase	transposase	transposase	NA	NA	NA	NA
AUR73263.1|1157601_1158729_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AUR73264.1|1158739_1159567_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AUR73265.1|1159553_1160420_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AUR73266.1|1161786_1162191_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75936.1|1162553_1163465_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR73267.1|1163479_1164190_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73268.1|1164186_1165431_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73269.1|1165432_1165867_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73270.1|1165895_1166201_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AUR73271.1|1166094_1166313_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73272.1|1166299_1167250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73273.1|1167306_1168455_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUR73274.1|1168535_1169486_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	1178245	1250941	4314502	transposase,protease	uncultured_Mediterranean_phage(22.22%)	60	NA	NA
AUR73281.1|1178245_1179196_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73282.1|1179192_1180884_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AUR73283.1|1180945_1182142_+	hydrolase	NA	NA	NA	NA	NA
AUR73284.1|1182155_1183034_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR73285.1|1183140_1184187_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73286.1|1184250_1184661_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUR73287.1|1184671_1186144_+	magnesium transporter	NA	NA	NA	NA	NA
AUR73288.1|1187286_1188579_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUR73289.1|1188585_1189596_-	hypothetical protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
AUR73290.1|1189766_1190732_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR73291.1|1190906_1191737_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73292.1|1191823_1192090_+	exodeoxyribonuclease 7 small subunit	NA	NA	NA	NA	NA
AUR73293.1|1192094_1193006_+	(2E,6E)-farnesyl diphosphate synthase	NA	NA	NA	NA	NA
AUR73294.1|1193055_1194918_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
AUR73295.1|1195074_1195872_+	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
AUR73296.1|1196091_1196472_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
AUR73297.1|1196519_1196843_+	primosomal replication protein N	NA	NA	NA	NA	NA
AUR73298.1|1196935_1197208_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
AUR73299.1|1197223_1197679_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
AUR73300.1|1197795_1198632_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73301.1|1198628_1200002_+	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
AUR73302.1|1200022_1200991_-	bile acid:sodium symporter	NA	NA	NA	NA	NA
AUR73303.1|1201070_1202048_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
AUR73304.1|1202152_1203832_-	ribonuclease	NA	A0A2I7SAD7	Vibrio_phage	36.9	1.5e-70
AUR73305.1|1203911_1204376_-	peroxiredoxin	NA	NA	NA	NA	NA
AUR73306.1|1204378_1204831_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73307.1|1204927_1206235_+	aminotransferase	NA	NA	NA	NA	NA
AUR73308.1|1206231_1207536_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
AUR73309.1|1207532_1208939_+	threonine synthase	NA	NA	NA	NA	NA
AUR73310.1|1209152_1209374_+	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
AUR73311.1|1209582_1210533_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73312.1|1210589_1211702_+	malate dehydrogenase	NA	NA	NA	NA	NA
AUR73313.1|1214085_1215036_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73314.1|1215626_1216403_+	5-keto-4-deoxy-D-glucarate aldolase	NA	NA	NA	NA	NA
AUR73315.1|1216520_1216784_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AUR73316.1|1216884_1217889_-	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AUR73317.1|1218089_1219691_-	lipid II flippase MurJ	NA	NA	NA	NA	NA
AUR73318.1|1219716_1220475_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUR73319.1|1220566_1221223_-	adenylate kinase	NA	NA	NA	NA	NA
AUR73320.1|1221313_1222078_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AUR73321.1|1222087_1222276_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73322.1|1222331_1223375_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AUR73323.1|1223371_1223785_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AUR73324.1|1223781_1224402_-	flagellar motor protein MotA	NA	NA	NA	NA	NA
AUR73325.1|1224682_1225633_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73326.1|1225800_1227192_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AUR73327.1|1227264_1227843_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AUR73328.1|1227959_1229357_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AUR73329.1|1229472_1230678_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AUR73330.1|1230777_1231296_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AUR73331.1|1231390_1231636_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AUR73332.1|1231863_1232178_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AUR73333.1|1232267_1237457_+	alpha-2-macroglobulin	NA	NA	NA	NA	NA
AUR75937.1|1237453_1239622_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AUR73334.1|1239641_1241993_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AUR73335.1|1241997_1243317_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AUR73336.1|1243335_1245009_+	paraquat-inducible protein B	NA	NA	NA	NA	NA
AUR73337.1|1245013_1245682_+	lipoprotein	NA	NA	NA	NA	NA
AUR73338.1|1245838_1249660_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUR73339.1|1249990_1250941_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	1265416	1322820	4314502	transposase	Pelagibacter_phage(25.0%)	54	NA	NA
AUR73351.1|1265416_1266367_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73352.1|1266465_1267416_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73353.1|1267412_1268744_-	MFS transporter	NA	NA	NA	NA	NA
AUR73354.1|1269983_1272005_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUR73355.1|1271997_1272639_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AUR73356.1|1272635_1273043_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AUR73357.1|1273039_1273840_+	SURF1 family protein	NA	NA	NA	NA	NA
AUR73358.1|1273914_1274619_+	oxidoreductase	NA	NA	NA	NA	NA
AUR73359.1|1274650_1275445_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AUR73360.1|1275441_1276392_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73361.1|1276526_1277633_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73362.1|1277643_1278741_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AUR73363.1|1278885_1280091_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AUR73364.1|1280097_1280619_-	molybdenum cofactor biosynthesis protein	NA	NA	NA	NA	NA
AUR73365.1|1280615_1281107_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AUR73366.1|1281103_1281355_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
AUR75938.1|1281335_1281821_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AUR73367.1|1281956_1285418_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73368.1|1285414_1286320_+	carboxymethylenebutenolidase	NA	NA	NA	NA	NA
AUR73369.1|1286329_1286761_-	lipoprotein	NA	NA	NA	NA	NA
AUR75939.1|1287007_1287511_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AUR73370.1|1287522_1288989_+	MFS transporter	NA	NA	NA	NA	NA
AUR73371.1|1289063_1289939_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75940.1|1289935_1290943_-	biotin synthase	NA	NA	NA	NA	NA
AUR73372.1|1291410_1291716_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73373.1|1291806_1292397_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73374.1|1292587_1293604_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR73375.1|1293795_1296132_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AUR73376.1|1296214_1296649_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUR75941.1|1296747_1297698_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73377.1|1299568_1301512_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUR73378.1|1301608_1302304_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73379.1|1302461_1303670_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73380.1|1303679_1304510_+	phosphoenolpyruvate hydrolase family protein	NA	NA	NA	NA	NA
AUR73381.1|1304577_1305030_+	SRPBCC family protein	NA	NA	NA	NA	NA
AUR73382.1|1305037_1306000_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73383.1|1306104_1307547_+	N-acyl-D-glutamate deacylase	NA	NA	NA	NA	NA
AUR73384.1|1307597_1308554_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AUR73385.1|1308569_1309949_-	oxidoreductase	NA	NA	NA	NA	NA
AUR73386.1|1309948_1310965_-	thiamine biosynthesis lipoprotein	NA	NA	NA	NA	NA
AUR73387.1|1310969_1311770_-	DUF4198 domain-containing protein	NA	NA	NA	NA	NA
AUR73388.1|1311799_1312315_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73389.1|1312337_1312967_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75942.1|1313113_1314061_+	nodulation factor ABC transporter ATP-binding protein NodI	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	31.0	1.7e-23
AUR73390.1|1314057_1314843_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR73391.1|1314931_1315492_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73392.1|1315501_1315888_+	fluoride ion transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	48.1	1.8e-16
AUR73393.1|1315910_1317242_-	amine oxidoreductase	NA	NA	NA	NA	NA
AUR73394.1|1317238_1318102_-	squalene synthase HpnD	NA	NA	NA	NA	NA
AUR73395.1|1318103_1318934_-	squalene synthase HpnC	NA	NA	NA	NA	NA
AUR73396.1|1319062_1320190_+	alanine racemase	NA	NA	NA	NA	NA
AUR73397.1|1320341_1321058_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUR73398.1|1321071_1321764_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73399.1|1321869_1322820_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	1377470	1445978	4314502	transposase	Planktothrix_phage(33.33%)	58	NA	NA
AUR73438.1|1377470_1378421_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75946.1|1378519_1379131_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUR73439.1|1379365_1380493_+	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR73440.1|1380603_1381692_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AUR73441.1|1381744_1382596_-	glycerol-3-phosphate transporter	NA	NA	NA	NA	NA
AUR73442.1|1382615_1383497_-	glycerol-3-phosphate transporter permease	NA	NA	NA	NA	NA
AUR75947.1|1383673_1384987_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR73443.1|1385197_1386031_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AUR73444.1|1386027_1386609_+	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AUR73445.1|1386962_1387913_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73446.1|1387928_1389044_+	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR73447.1|1389146_1390073_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR73448.1|1390072_1391311_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR73449.1|1391307_1392075_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AUR73450.1|1392075_1392777_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	7.8e-18
AUR75948.1|1392858_1393305_-	glutamate racemase	NA	NA	NA	NA	NA
AUR73451.1|1394194_1394833_+	glutathione S-transferase	NA	NA	NA	NA	NA
AUR73452.1|1395601_1396552_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73453.1|1396773_1397151_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75949.1|1397298_1397796_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73454.1|1397792_1398320_+	RES domain-containing protein	NA	NA	NA	NA	NA
AUR73455.1|1398453_1399269_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR73456.1|1399281_1400463_-	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AUR73457.1|1400510_1401404_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AUR75950.1|1401530_1402001_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73458.1|1402126_1402954_-	lipoprotein	NA	NA	NA	NA	NA
AUR73459.1|1402982_1403759_-	lipoate--protein ligase A	NA	NA	NA	NA	NA
AUR73460.1|1403755_1404049_-	biotin--protein ligase	NA	NA	NA	NA	NA
AUR73461.1|1404045_1404510_-	acetyltransferase	NA	NA	NA	NA	NA
AUR73462.1|1404521_1405307_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AUR73463.1|1405332_1405833_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AUR73464.1|1405915_1407094_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AUR73465.1|1408721_1409057_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73466.1|1409244_1410693_+	CoA transferase	NA	NA	NA	NA	NA
AUR73467.1|1410750_1411095_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AUR73468.1|1411201_1411741_-	peroxiredoxin	NA	NA	NA	NA	NA
AUR73469.1|1411833_1412784_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73470.1|1412770_1413253_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73471.1|1413522_1413954_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73472.1|1414135_1414540_-	DoxX family protein	NA	NA	NA	NA	NA
AUR73473.1|1415776_1416100_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73474.1|1416102_1416990_-	aldo/keto reductase	NA	NA	NA	NA	NA
AUR73475.1|1417022_1417448_-	universal stress protein	NA	NA	NA	NA	NA
AUR73476.1|1417519_1417873_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73477.1|1418112_1418619_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73478.1|1418657_1419989_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73479.1|1420048_1420864_+	YggS family pyridoxal phosphate enzyme	NA	NA	NA	NA	NA
AUR73480.1|1420860_1421715_+	pyridoxine kinase	NA	NA	NA	NA	NA
AUR75951.1|1424777_1427342_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AUR73481.1|1428708_1430463_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AUR73482.1|1430459_1432580_-	glycogen debranching enzyme	NA	NA	NA	NA	NA
AUR73483.1|1432584_1434780_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AUR75952.1|1434776_1438118_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AUR73484.1|1440920_1441871_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73485.1|1441936_1442116_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73486.1|1442232_1442955_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUR73487.1|1442974_1444120_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73488.1|1445027_1445978_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	1490544	1562061	4314502	transposase,protease	Faecalibacterium_phage(12.5%)	58	NA	NA
AUR73522.1|1490544_1491495_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73523.1|1491576_1492125_-	lipoprotein	NA	NA	NA	NA	NA
AUR73524.1|1492127_1492466_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73525.1|1492860_1495452_-	aconitate hydratase B	NA	NA	NA	NA	NA
AUR73526.1|1495518_1496262_+	DNA polymerase III subunit epsilon	NA	A0A2K9V2V7	Faecalibacterium_phage	31.8	4.3e-06
AUR73527.1|1496274_1496661_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
AUR73528.1|1496667_1496958_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AUR73529.1|1497093_1497393_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73530.1|1497461_1498364_+	EamA family transporter	NA	NA	NA	NA	NA
AUR73531.1|1498367_1499138_+	anion permease	NA	NA	NA	NA	NA
AUR73532.1|1499523_1499973_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73533.1|1500040_1500991_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73534.1|1500977_1501208_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73535.1|1501352_1502264_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73536.1|1502489_1504007_+	propionyl-CoA--succinate CoA transferase	NA	NA	NA	NA	NA
AUR73537.1|1505238_1506201_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73538.1|1506289_1506538_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73539.1|1513116_1515864_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUR73540.1|1515884_1516508_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AUR73541.1|1516519_1516990_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AUR73542.1|1517001_1517388_-	ribosome silencing factor RsfS	NA	NA	NA	NA	NA
AUR73543.1|1517449_1518043_-	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AUR73544.1|1518033_1518945_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AUR73545.1|1518960_1520334_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AUR73546.1|1520368_1521100_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR73547.1|1521176_1522775_+	ATP-binding protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.8e-78
AUR73548.1|1522835_1524191_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AUR73549.1|1524225_1525551_-	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
AUR73550.1|1525732_1526665_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AUR73551.1|1526675_1528169_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUR73552.1|1528165_1529089_-	EamA family transporter	NA	NA	NA	NA	NA
AUR73553.1|1529091_1530354_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUR73554.1|1530373_1531387_-	acetylpolyamine amidohydrolase	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
AUR73555.1|1531459_1531783_-	cupin	NA	NA	NA	NA	NA
AUR73556.1|1531779_1533054_-	4-aminobutyrate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
AUR73557.1|1533196_1534147_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73558.1|1534143_1535781_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
AUR73559.1|1535785_1536625_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR73560.1|1536621_1537638_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR73561.1|1537745_1539320_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR73562.1|1539739_1541284_+	transcriptional regulator	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
AUR73563.1|1541388_1542456_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
AUR73564.1|1542474_1544061_-	multidrug resistance protein	NA	NA	NA	NA	NA
AUR73565.1|1544057_1545272_-	EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUR73566.1|1546820_1547309_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73567.1|1547368_1548226_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AUR73568.1|1548288_1549239_+	EamA family transporter	NA	NA	NA	NA	NA
AUR73569.1|1549301_1550291_+	quinone oxidoreductase	NA	NA	NA	NA	NA
AUR73570.1|1550365_1551247_-|protease	protease HtpX	protease	NA	NA	NA	NA
AUR73571.1|1552304_1553156_+	sulfurtransferase	NA	NA	NA	NA	NA
AUR73572.1|1553172_1553742_-	phosphohydrolase	NA	NA	NA	NA	NA
AUR73573.1|1553772_1554636_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR73574.1|1554795_1555872_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
AUR75956.1|1555936_1557634_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR73575.1|1557650_1558481_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AUR73576.1|1558509_1559532_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR73577.1|1560061_1561012_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73578.1|1561110_1562061_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	1608379	1691087	4314502	tRNA,transposase	Klosneuvirus(16.67%)	51	NA	NA
AUR73623.1|1608379_1609330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73624.1|1609428_1612029_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUR73625.1|1612135_1613140_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR73626.1|1613248_1614589_-	aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AUR73627.1|1614629_1615658_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73628.1|1615853_1616399_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73629.1|1616395_1616956_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AUR73630.1|1617054_1618005_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73631.1|1618028_1618493_-|tRNA	glutamyl-tRNA amidotransferase	tRNA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AUR73632.1|1618639_1619848_+	flavohemoprotein	NA	NA	NA	NA	NA
AUR73633.1|1619858_1620329_+	DNA-binding protein	NA	NA	NA	NA	NA
AUR73634.1|1620447_1621737_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AUR73635.1|1624477_1625428_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73636.1|1625526_1626543_-	folate-binding protein	NA	NA	NA	NA	NA
AUR73637.1|1626709_1627756_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AUR73638.1|1627752_1628379_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AUR73639.1|1628375_1629428_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AUR73640.1|1629477_1630248_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AUR73641.1|1630298_1631135_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73642.1|1631330_1632071_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR75961.1|1632145_1632889_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR73643.1|1633550_1634324_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AUR75962.1|1635461_1636751_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
AUR73644.1|1638361_1639609_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUR73645.1|1639618_1641328_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AUR73646.1|1641324_1642263_-	CoA ester lyase	NA	NA	NA	NA	NA
AUR73647.1|1642259_1643543_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AUR73648.1|1643546_1644029_-	TRAP transporter permease DctQ	NA	NA	NA	NA	NA
AUR73649.1|1644029_1645016_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR73650.1|1645188_1645908_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73651.1|1646024_1646975_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73652.1|1650160_1651510_+	amidase	NA	NA	NA	NA	NA
AUR73653.1|1651528_1652362_+	DUF1445 domain-containing protein	NA	NA	NA	NA	NA
AUR73654.1|1652495_1653371_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AUR73655.1|1653414_1657131_-	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
AUR73656.1|1657139_1657769_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AUR73657.1|1661421_1662372_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73658.1|1670086_1670524_+	protein FimA	NA	NA	NA	NA	NA
AUR73659.1|1670683_1671508_+	fimbrial chaperone	NA	NA	NA	NA	NA
AUR73660.1|1671570_1674192_+	outer membrane usher protein FimC	NA	NA	NA	NA	NA
AUR75963.1|1674205_1675303_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
AUR73661.1|1675295_1677050_+	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
AUR73662.1|1678367_1678868_-	TRAP transporter permease DctQ	NA	NA	NA	NA	NA
AUR73663.1|1678874_1679960_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR73664.1|1681405_1681897_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AUR73665.1|1681910_1682876_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR73666.1|1682896_1683598_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73667.1|1684772_1685285_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR73668.1|1685363_1688987_+	5-oxoprolinase	NA	NA	NA	NA	NA
AUR73669.1|1689000_1690032_-	peptidase C45	NA	NA	NA	NA	NA
AUR73670.1|1690136_1691087_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	1760891	1801228	4314502	transposase	Brazilian_cedratvirus(25.0%)	34	NA	NA
AUR73726.1|1760891_1761842_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73727.1|1763168_1763771_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73728.1|1764010_1764712_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUR73729.1|1764705_1765488_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AUR73730.1|1765672_1766623_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73731.1|1766721_1767459_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AUR73732.1|1767648_1768407_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AUR73733.1|1768453_1769443_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR73734.1|1769620_1770589_-	transporter	NA	NA	NA	NA	NA
AUR73735.1|1772128_1773097_+	AAA family ATPase	NA	NA	NA	NA	NA
AUR73736.1|1773105_1774047_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AUR73737.1|1774520_1775531_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75967.1|1775521_1777036_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73738.1|1777032_1778379_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75968.1|1778381_1779416_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AUR73739.1|1779465_1781091_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AUR73740.1|1781643_1782594_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73741.1|1782887_1783610_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AUR73742.1|1784048_1785236_-	MFS transporter	NA	NA	NA	NA	NA
AUR73743.1|1785239_1785620_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR73744.1|1787339_1788311_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR73745.1|1788324_1789038_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUR73746.1|1789042_1789960_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73747.1|1790066_1790363_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73748.1|1790461_1791412_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73749.1|1792570_1795504_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AUR73750.1|1795503_1795848_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AUR73751.1|1795844_1797473_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AUR73752.1|1797469_1797949_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AUR73753.1|1797945_1798230_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AUR73754.1|1798226_1798553_+	cation:proton antiporter	NA	NA	NA	NA	NA
AUR73755.1|1798708_1799659_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73756.1|1799702_1800245_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73757.1|1800277_1801228_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	1818881	1884885	4314502	tRNA,transposase,protease	uncultured_Mediterranean_phage(11.76%)	58	NA	NA
AUR73773.1|1818881_1819922_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AUR73774.1|1820019_1821036_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR73775.1|1821303_1821951_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUR73776.1|1822076_1822835_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AUR75969.1|1822909_1823599_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AUR73777.1|1823616_1824501_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AUR73778.1|1824497_1825277_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AUR73779.1|1825303_1825981_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73780.1|1826269_1827022_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73781.1|1827140_1828541_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AUR73782.1|1828564_1828963_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUR73783.1|1829138_1829339_+	copper chaperone	NA	NA	NA	NA	NA
AUR73784.1|1829477_1830206_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AUR73785.1|1830339_1831755_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AUR73786.1|1831758_1832622_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AUR73787.1|1832634_1833384_-	glycerophosphoryl diester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AUR73788.1|1833566_1835582_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AUR75970.1|1835563_1836112_-	arylesterase	NA	NA	NA	NA	NA
AUR73789.1|1836188_1836908_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AUR73790.1|1837006_1837957_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73791.1|1838105_1838444_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AUR73792.1|1838501_1838663_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AUR73793.1|1838694_1838895_-	CsbD family protein	NA	NA	NA	NA	NA
AUR73794.1|1839160_1841734_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AUR73795.1|1841804_1844378_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AUR73796.1|1846904_1847393_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75971.1|1847484_1848636_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUR73797.1|1848689_1849511_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73798.1|1849549_1850779_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AUR73799.1|1850907_1851348_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73800.1|1851292_1851472_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73801.1|1851458_1852409_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73802.1|1852405_1852879_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUR73803.1|1853040_1853979_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73804.1|1853980_1855189_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AUR73805.1|1855293_1855800_-	signal peptidase II	NA	NA	NA	NA	NA
AUR73806.1|1855802_1858664_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AUR73807.1|1858653_1859619_-	bifunctional riboflavin kinase/FMN adenylyltransferase	NA	NA	NA	NA	NA
AUR73808.1|1859678_1861679_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.0	9.7e-21
AUR73809.1|1861777_1862728_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73810.1|1862724_1863099_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73811.1|1863360_1864569_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AUR73812.1|1864565_1866866_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AUR73813.1|1866918_1869531_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AUR73814.1|1869890_1871816_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AUR73815.1|1871812_1872709_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AUR73816.1|1872715_1873855_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AUR73817.1|1873854_1874676_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AUR73818.1|1876246_1876576_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73819.1|1876958_1878215_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUR73820.1|1878291_1878573_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73821.1|1878614_1878935_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73822.1|1879241_1879445_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AUR73823.1|1879528_1880095_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73824.1|1880752_1881331_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AUR73825.1|1881509_1882820_+	trigger factor	NA	NA	NA	NA	NA
AUR73826.1|1882822_1883476_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AUR73827.1|1883580_1884885_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
>prophage 19
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	1913979	1983391	4314502	tRNA,transposase,protease	Klosneuvirus(22.22%)	58	NA	NA
AUR73858.1|1913979_1914930_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73859.1|1915054_1915864_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR73860.1|1916064_1917015_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73861.1|1918288_1919506_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73862.1|1920562_1921465_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73863.1|1921541_1922414_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AUR73864.1|1922544_1922913_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AUR73865.1|1922970_1924017_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AUR73866.1|1924212_1925469_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AUR73867.1|1925473_1926811_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR73868.1|1926960_1927917_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73869.1|1929389_1929740_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73870.1|1929787_1931362_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR73871.1|1931414_1932359_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR73872.1|1932376_1933207_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR73873.1|1933199_1934834_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AUR73874.1|1934830_1936186_+	amidase	NA	NA	NA	NA	NA
AUR73875.1|1937092_1938670_+	lipoprotein	NA	NA	NA	NA	NA
AUR73876.1|1938673_1939948_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75972.1|1940045_1940420_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73877.1|1942135_1943269_+	general secretion pathway protein	NA	NA	NA	NA	NA
AUR73878.1|1943306_1943912_+	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AUR73879.1|1943908_1944727_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73880.1|1944798_1947423_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AUR73881.1|1947409_1947664_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73882.1|1947730_1948312_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73883.1|1948615_1948876_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AUR73884.1|1949041_1949665_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AUR73885.1|1949664_1950438_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AUR73886.1|1950434_1951643_-	aminotransferase	NA	NA	NA	NA	NA
AUR73887.1|1951668_1952142_-	RidA family protein	NA	NA	NA	NA	NA
AUR73888.1|1952215_1953166_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73889.1|1953152_1953341_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73890.1|1953264_1954614_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUR73891.1|1955379_1956135_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AUR73892.1|1956227_1959110_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AUR73893.1|1959432_1959858_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AUR73894.1|1959885_1961034_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AUR73895.1|1961030_1961537_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR73896.1|1961543_1962839_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AUR73897.1|1962879_1964184_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AUR73898.1|1964185_1964824_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73899.1|1964826_1965987_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AUR73900.1|1966013_1967369_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AUR73901.1|1967372_1968443_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AUR73902.1|1968581_1968818_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AUR73903.1|1968905_1970012_+	GTPase HflX	NA	NA	NA	NA	NA
AUR73904.1|1969977_1971282_+|protease	protease modulator HflK	protease	NA	NA	NA	NA
AUR73905.1|1971300_1972200_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AUR73906.1|1972383_1973541_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AUR73907.1|1973605_1974913_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AUR73908.1|1975026_1975566_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
AUR73909.1|1975843_1976056_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AUR73910.1|1976075_1978106_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AUR75973.1|1978905_1981074_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AUR73911.1|1981483_1981783_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73912.1|1982067_1982481_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AUR73913.1|1982440_1983391_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	1994595	2052627	4314502	transposase	Klosneuvirus(20.0%)	57	NA	NA
AUR73927.1|1994595_1995546_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73928.1|1995542_1996817_-	adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AUR73929.1|1996914_1998114_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AUR73930.1|1998110_1998764_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUR73931.1|1998760_2000197_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AUR73932.1|2000184_2000544_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AUR73933.1|2001516_2002467_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73934.1|2003512_2005378_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUR75975.1|2005635_2007156_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUR73935.1|2007243_2007894_-	flavodoxin family protein	NA	NA	NA	NA	NA
AUR73936.1|2008842_2010138_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AUR73937.1|2010159_2011044_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR75976.1|2011142_2012018_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AUR73938.1|2012007_2012364_-	RNA signal recognition particle	NA	NA	NA	NA	NA
AUR73939.1|2012437_2013469_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUR73940.1|2013598_2013778_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AUR73941.1|2013875_2014400_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73942.1|2014410_2015247_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUR73943.1|2015359_2015731_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR73944.1|2015727_2016279_+	ATPase	NA	NA	NA	NA	NA
AUR73945.1|2016294_2017986_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AUR73946.1|2018034_2018715_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR73947.1|2018962_2019427_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73948.1|2019596_2020526_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AUR73949.1|2020829_2021780_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73950.1|2021798_2022146_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AUR73951.1|2022174_2023614_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AUR73952.1|2023632_2024028_-	VOC family protein	NA	NA	NA	NA	NA
AUR73953.1|2024202_2024811_+	peptidase S16	NA	NA	NA	NA	NA
AUR73954.1|2024823_2025642_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AUR73955.1|2025593_2026568_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUR73956.1|2026596_2027658_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73957.1|2027654_2029871_-	aldehyde oxidase	NA	NA	NA	NA	NA
AUR73958.1|2029884_2030343_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AUR73959.1|2030500_2030845_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73960.1|2031001_2031907_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR75977.1|2031993_2033007_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AUR73961.1|2034986_2036003_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR73962.1|2036145_2037498_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.4	8.5e-45
AUR73963.1|2037672_2037969_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73964.1|2039493_2039670_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73965.1|2039641_2040280_+	hypothetical protein	NA	NA	NA	NA	NA
AUR73966.1|2040354_2041326_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR73967.1|2041329_2042184_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
AUR73968.1|2042202_2043024_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUR73969.1|2043055_2043850_+	amidase	NA	NA	NA	NA	NA
AUR73970.1|2043898_2044504_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75978.1|2044500_2045295_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AUR73971.1|2045580_2047086_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AUR73972.1|2047127_2047910_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
AUR73973.1|2047979_2048426_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73974.1|2048422_2049649_-	NnrS family protein	NA	NA	NA	NA	NA
AUR73975.1|2049641_2050046_-	preprotein translocase subunit TatC	NA	NA	NA	NA	NA
AUR73976.1|2050205_2050508_+	SelT/selW/selH domain protein	NA	NA	NA	NA	NA
AUR73977.1|2050504_2051455_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR73978.1|2051441_2051633_-	hypothetical protein	NA	NA	NA	NA	NA
AUR73979.1|2051676_2052627_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	2261462	2325647	4314502	transposase,tRNA,protease	Salmonella_phage(16.67%)	60	NA	NA
AUR74150.1|2261462_2262950_-|protease	serine protease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
AUR74151.1|2262987_2264049_-	siderophore-interacting protein	NA	NA	NA	NA	NA
AUR75985.1|2264045_2264546_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74152.1|2264558_2265158_-	RNA polymerase sigma factor	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
AUR74153.1|2265154_2265655_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74154.1|2265656_2266886_-	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA	NA
AUR74155.1|2267075_2267315_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
AUR74156.1|2267497_2268250_-	beta-ketoacyl-ACP reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
AUR74157.1|2268251_2269187_-	malonyl CoA-acyl carrier protein transacylase	NA	NA	NA	NA	NA
AUR74158.1|2269268_2270255_-	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
AUR74159.1|2270254_2271313_-	phosphate acyltransferase	NA	NA	NA	NA	NA
AUR74160.1|2271369_2271552_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
AUR75986.1|2271603_2272197_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74161.1|2272305_2272905_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AUR74162.1|2272901_2273612_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUR74163.1|2273613_2274441_+	hydrolase	NA	NA	NA	NA	NA
AUR74164.1|2276247_2277489_-	MFS transporter	NA	NA	NA	NA	NA
AUR74165.1|2277500_2278274_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AUR74166.1|2278300_2279251_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74167.1|2279349_2280300_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74168.1|2280398_2281181_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUR74169.1|2281269_2282475_-	transporter	NA	NA	NA	NA	NA
AUR74170.1|2283200_2284586_+	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AUR74171.1|2284604_2285210_+	N-acetyltransferase	NA	NA	NA	NA	NA
AUR74172.1|2285206_2287063_+	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AUR74173.1|2287059_2287860_+	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AUR74174.1|2287874_2289068_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AUR74175.1|2289135_2290110_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUR74176.1|2290232_2291456_+	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AUR74177.1|2291566_2293771_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AUR74178.1|2294065_2294725_+	antibiotic resistance protein	NA	NA	NA	NA	NA
AUR74179.1|2294732_2294939_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74180.1|2295277_2296033_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AUR74181.1|2296048_2296210_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74182.1|2296303_2296819_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AUR74183.1|2297091_2297409_+	virulence factor	NA	NA	NA	NA	NA
AUR74184.1|2297596_2297845_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74185.1|2298123_2299479_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AUR74186.1|2299525_2300905_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AUR74187.1|2300967_2301600_-	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AUR75987.1|2301599_2303960_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AUR74188.1|2304001_2304961_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AUR74189.1|2304947_2305634_+	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AUR74190.1|2305630_2305963_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AUR74191.1|2306078_2307029_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74192.1|2307025_2309092_-	cation acetate symporter	NA	NA	NA	NA	NA
AUR74193.1|2309091_2309364_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74194.1|2310058_2310148_+	potassium-transporting ATPase subunit F	NA	NA	NA	NA	NA
AUR74195.1|2310147_2311932_+	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AUR74196.1|2311955_2314121_+	potassium-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AUR74197.1|2314131_2314731_+	potassium-transporting ATPase subunit C	NA	NA	NA	NA	NA
AUR74198.1|2317552_2318248_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUR74199.1|2318256_2319207_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74200.1|2319305_2320547_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74201.1|2320696_2321677_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74202.1|2321875_2323132_-	isocitrate dehydrogenase (NADP(+))	NA	Q77Z09	Phage_21	64.8	1.2e-11
AUR74203.1|2323334_2323760_+	hypothetical protein	NA	NA	NA	NA	NA
AUR74204.1|2323801_2324164_-	cytochrome	NA	NA	NA	NA	NA
AUR74205.1|2324176_2324530_-	cytochrome C	NA	NA	NA	NA	NA
AUR74206.1|2324696_2325647_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	2405324	2445992	4314502	tRNA,transposase	Salmonella_phage(33.33%)	44	NA	NA
AUR74273.1|2405324_2406275_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74274.1|2406385_2406568_+	hypothetical protein	NA	NA	NA	NA	NA
AUR74275.1|2406667_2407264_-	lipoprotein	NA	NA	NA	NA	NA
AUR74276.1|2407447_2408539_+	hypothetical protein	NA	NA	NA	NA	NA
AUR74277.1|2409038_2409449_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR74278.1|2409507_2409849_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AUR74279.1|2409854_2412272_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AUR74280.1|2412284_2413307_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AUR74281.1|2413381_2413741_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AUR74282.1|2413756_2413954_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AUR74283.1|2414289_2415240_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74284.1|2415343_2415625_+	hypothetical protein	NA	NA	NA	NA	NA
AUR74285.1|2415739_2417188_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR74286.1|2417298_2418249_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74287.1|2418245_2418695_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AUR74288.1|2418714_2418903_+	hypothetical protein	NA	NA	NA	NA	NA
AUR74289.1|2418889_2419840_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74290.1|2420084_2420798_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUR74291.1|2420920_2421148_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUR74292.1|2421442_2422081_-	DedA family protein	NA	NA	NA	NA	NA
AUR74293.1|2422153_2423224_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AUR74294.1|2423220_2424171_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74295.1|2424586_2425111_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AUR74296.1|2425114_2425384_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74297.1|2425582_2426644_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUR74298.1|2426727_2428362_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AUR74299.1|2428363_2429167_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR74300.1|2429195_2430155_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR74301.1|2430158_2431673_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR74302.1|2431709_2432714_-	peptidase M20	NA	NA	NA	NA	NA
AUR74303.1|2432721_2432970_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74304.1|2433144_2433615_-	histidine kinase	NA	NA	NA	NA	NA
AUR74305.1|2433650_2434262_-	LysE family translocator	NA	NA	NA	NA	NA
AUR74306.1|2434292_2434916_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR74307.1|2434996_2436529_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AUR74308.1|2436563_2437805_-	MFS transporter	NA	NA	NA	NA	NA
AUR74309.1|2437848_2438880_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AUR74310.1|2438876_2440046_-	amine oxidase	NA	NA	NA	NA	NA
AUR74311.1|2440039_2440720_-	anti-sigma factor	NA	NA	NA	NA	NA
AUR74312.1|2440881_2441724_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR74313.1|2441886_2442858_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUR74314.1|2443029_2443908_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AUR74315.1|2443930_2445001_-	FUSC family protein	NA	NA	NA	NA	NA
AUR74316.1|2445041_2445992_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	2495647	2558406	4314502	tRNA,transposase	Cedratvirus(33.33%)	51	NA	NA
AUR74350.1|2495647_2496598_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74351.1|2497797_2498748_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74352.1|2500453_2501419_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR74353.1|2502173_2504282_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AUR74354.1|2504292_2505699_-	ferric reductase	NA	NA	NA	NA	NA
AUR74355.1|2507770_2508787_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR74356.1|2508978_2509596_-	N-carbamoylsarcosine amidase	NA	NA	NA	NA	NA
AUR74357.1|2509611_2510643_-	2,5-dihydroxypyridine 5,6-dioxygenase	NA	NA	NA	NA	NA
AUR74358.1|2511509_2512262_-	maleate isomerase	NA	NA	NA	NA	NA
AUR74359.1|2512562_2513714_+	monooxygenase	NA	NA	NA	NA	NA
AUR74360.1|2513790_2514312_+	oxidoreductase	NA	NA	NA	NA	NA
AUR74361.1|2516755_2517526_-	ABC transporter ATP-binding protein	NA	A0A285PWH2	Cedratvirus	29.2	3.3e-09
AUR74362.1|2517522_2518299_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.5	1.3e-13
AUR74363.1|2518295_2520245_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR74364.1|2520336_2521545_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR74365.1|2521591_2522542_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75999.1|2522909_2523395_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUR74366.1|2523739_2523976_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74367.1|2524184_2526170_+	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	NA	NA	NA	NA	NA
AUR74368.1|2526175_2528281_+	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA	NA	NA	NA	NA
AUR74369.1|2528284_2529544_+	poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA	NA	NA	NA	NA
AUR74370.1|2529524_2530163_+	hypothetical protein	NA	NA	NA	NA	NA
AUR74371.1|2530167_2531280_-	alkene reductase	NA	NA	NA	NA	NA
AUR74372.1|2531332_2531632_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR74373.1|2531839_2532289_+	hypothetical protein	NA	NA	NA	NA	NA
AUR74374.1|2532295_2532631_+	hypothetical protein	NA	NA	NA	NA	NA
AUR74375.1|2532644_2533121_+	hypothetical protein	NA	NA	NA	NA	NA
AUR74376.1|2533124_2533517_+	RidA family protein	NA	NA	NA	NA	NA
AUR76000.1|2533516_2534542_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUR74377.1|2534542_2536663_+	pimeloyl-CoA synthetase	NA	NA	NA	NA	NA
AUR74378.1|2536671_2537376_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUR74379.1|2537534_2538563_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
AUR74380.1|2538969_2540061_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.6	9.3e-26
AUR74381.1|2540057_2540861_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR74382.1|2540857_2541685_-	polyamine ABC transporter permease	NA	NA	NA	NA	NA
AUR74383.1|2543322_2544447_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR74384.1|2544558_2545512_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76001.1|2545516_2546155_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AUR74385.1|2546242_2547010_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUR74386.1|2547024_2547828_-	aspartate dehydrogenase	NA	NA	NA	NA	NA
AUR74387.1|2547824_2548634_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUR74388.1|2548630_2549614_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR74389.1|2549642_2550911_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AUR74390.1|2550913_2551438_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AUR74391.1|2551434_2552376_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUR74392.1|2552385_2552700_-	NIPSNAP family protein	NA	NA	NA	NA	NA
AUR74393.1|2552741_2553242_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AUR74394.1|2553585_2554602_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AUR74395.1|2554995_2556288_-	aspartate kinase	NA	NA	NA	NA	NA
AUR74396.1|2556360_2557395_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
AUR74397.1|2557455_2558406_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	2751430	2895027	4314502	transposase	uncultured_Caudovirales_phage(33.33%)	121	NA	NA
AUR74572.1|2751430_2752381_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74573.1|2752750_2753323_+	flagellar basal body protein FliL	NA	NA	NA	NA	NA
AUR74574.1|2753325_2754336_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AUR74575.1|2754328_2754829_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AUR74576.1|2754839_2755181_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AUR76009.1|2755192_2755984_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AUR74577.1|2756000_2756270_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AUR74578.1|2756292_2757081_+	flagellar biosynthesis protein FliR	NA	NA	NA	NA	NA
AUR74579.1|2757127_2758144_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR74580.1|2758360_2759803_-	chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AUR74581.1|2759981_2761601_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AUR74582.1|2761721_2763542_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AUR74583.1|2763620_2765153_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AUR74584.1|2765186_2766833_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AUR74585.1|2766902_2767925_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AUR74586.1|2767942_2769076_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AUR74587.1|2769078_2769768_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AUR74588.1|2769767_2770553_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AUR74589.1|2770596_2771361_-	flagellar biosynthesis protein FlgF	NA	NA	NA	NA	NA
AUR74590.1|2771399_2772821_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AUR74591.1|2772886_2773591_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AUR74592.1|2773638_2774058_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AUR74593.1|2774070_2774478_-	flagellar biosynthesis protein FlgB	NA	NA	NA	NA	NA
AUR76010.1|2774661_2775372_+	flagella basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AUR74594.1|2775498_2775789_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AUR74595.1|2775806_2776289_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AUR74596.1|2780794_2781949_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AUR74597.1|2782254_2783271_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR74598.1|2783517_2784306_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR74599.1|2784372_2785053_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR74600.1|2785049_2785820_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AUR74601.1|2785918_2786869_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74602.1|2787238_2787811_+	flagellar basal body protein FliL	NA	NA	NA	NA	NA
AUR74603.1|2787813_2788824_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AUR74604.1|2788816_2789317_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AUR74605.1|2789327_2789669_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AUR76011.1|2789680_2790472_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AUR74606.1|2790488_2790758_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AUR74607.1|2790780_2791569_+	flagellar biosynthesis protein FliR	NA	NA	NA	NA	NA
AUR74608.1|2791615_2792632_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR74609.1|2792848_2794291_-	chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AUR74610.1|2794469_2796089_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AUR74611.1|2796209_2798030_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AUR74612.1|2798108_2799641_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AUR74613.1|2799674_2801321_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AUR74614.1|2801390_2802413_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AUR74615.1|2802430_2803564_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AUR74616.1|2803566_2804256_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AUR74617.1|2804255_2805041_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AUR74618.1|2805084_2805849_-	flagellar biosynthesis protein FlgF	NA	NA	NA	NA	NA
AUR74619.1|2805887_2807309_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AUR74620.1|2807374_2808079_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AUR74621.1|2808126_2808546_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AUR74622.1|2808558_2808966_-	flagellar biosynthesis protein FlgB	NA	NA	NA	NA	NA
AUR76012.1|2809149_2809860_+	flagella basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AUR74623.1|2809986_2810277_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AUR74624.1|2810294_2810777_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AUR74625.1|2815282_2816437_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AUR74626.1|2816742_2817759_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR74627.1|2818005_2818794_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR74628.1|2818860_2819541_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR74629.1|2819537_2820308_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AUR74630.1|2820406_2821357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74631.1|2821726_2822299_+	flagellar basal body protein FliL	NA	NA	NA	NA	NA
AUR74632.1|2822301_2823312_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AUR74633.1|2823304_2823805_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AUR74634.1|2823815_2824157_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AUR76013.1|2824168_2824960_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AUR74635.1|2824976_2825246_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AUR74636.1|2825268_2826057_+	flagellar biosynthesis protein FliR	NA	NA	NA	NA	NA
AUR74637.1|2826103_2827120_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR74638.1|2827336_2828779_-	chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AUR74639.1|2828957_2830577_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AUR74640.1|2830697_2832518_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AUR74641.1|2832596_2834129_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AUR74642.1|2834162_2835809_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AUR74643.1|2835878_2836901_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AUR74644.1|2836918_2838052_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AUR74645.1|2838054_2838744_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AUR74646.1|2838743_2839529_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AUR74647.1|2839572_2840337_-	flagellar biosynthesis protein FlgF	NA	NA	NA	NA	NA
AUR74648.1|2840375_2841797_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AUR74649.1|2841862_2842567_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AUR74650.1|2842614_2843034_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AUR74651.1|2843046_2843454_-	flagellar biosynthesis protein FlgB	NA	NA	NA	NA	NA
AUR76014.1|2843637_2844348_+	flagella basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AUR74652.1|2844474_2844765_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AUR74653.1|2844782_2845265_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AUR74654.1|2849770_2850925_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AUR74655.1|2851230_2852247_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR74656.1|2852493_2853282_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR74657.1|2853348_2854029_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR74658.1|2854025_2854796_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AUR74659.1|2854894_2855845_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74660.1|2855900_2856818_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AUR74661.1|2856828_2858007_-	mandelate racemase	NA	NA	NA	NA	NA
AUR74662.1|2858026_2859022_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR74663.1|2860610_2861219_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUR74664.1|2861206_2862247_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUR74665.1|2862264_2863227_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR74666.1|2863223_2864417_-	CoA transferase	NA	NA	NA	NA	NA
AUR74667.1|2864413_2865211_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AUR74668.1|2865236_2866223_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR74669.1|2866241_2868281_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUR76015.1|2868482_2869163_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR74670.1|2869176_2870088_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
AUR74671.1|2870084_2870663_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AUR74672.1|2870801_2871707_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR74673.1|2875122_2877723_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUR74674.1|2878678_2879311_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AUR74675.1|2879704_2880463_+	hypothetical protein	NA	NA	NA	NA	NA
AUR74676.1|2880459_2881662_+	cardiolipin synthase B	NA	NA	NA	NA	NA
AUR74677.1|2881658_2881859_+	hypothetical protein	NA	NA	NA	NA	NA
AUR74678.1|2881849_2882800_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74679.1|2882978_2884673_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AUR74680.1|2884669_2885755_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AUR74681.1|2885802_2886702_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR74682.1|2886712_2887357_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AUR76016.1|2891634_2892732_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AUR74683.1|2892994_2893978_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AUR74684.1|2894076_2895027_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	3111337	3179754	4314502	tRNA,transposase	Oenococcus_phage(33.33%)	55	NA	NA
AUR74863.1|3111337_3112288_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74864.1|3112490_3113480_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AUR76028.1|3113563_3113917_+	hypothetical protein	NA	NA	NA	NA	NA
AUR74865.1|3113994_3114603_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74866.1|3116276_3116855_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
AUR74867.1|3116879_3117833_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR74868.1|3117872_3118790_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AUR74869.1|3118911_3119838_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR74870.1|3119845_3120592_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76029.1|3120918_3121860_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AUR74871.1|3121935_3122058_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74872.1|3122086_3123784_-	sodium:proline symporter	NA	NA	NA	NA	NA
AUR74873.1|3124218_3125640_-	MFS transporter	NA	NA	NA	NA	NA
AUR74874.1|3125793_3126573_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUR76030.1|3126697_3127570_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR74875.1|3127681_3128806_+	racemase	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AUR74876.1|3128851_3129814_+	lipoprotein	NA	NA	NA	NA	NA
AUR74877.1|3129806_3130661_+	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AUR74878.1|3130768_3131179_+	VOC family protein	NA	NA	NA	NA	NA
AUR74879.1|3131175_3132126_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74880.1|3132224_3133106_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AUR74881.1|3133183_3134563_-	4Fe-4S binding domain-containing protein	NA	NA	NA	NA	NA
AUR74882.1|3134601_3135447_-	FTR1 family iron permease	NA	NA	NA	NA	NA
AUR74883.1|3135462_3135807_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
AUR74884.1|3135809_3136346_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74885.1|3136518_3137094_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AUR74886.1|3137196_3137934_-	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AUR74887.1|3138001_3139639_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AUR74888.1|3139746_3140502_-	laccase domain-containing protein	NA	NA	NA	NA	NA
AUR74889.1|3140489_3141452_-	pseudouridine synthase	NA	NA	NA	NA	NA
AUR74890.1|3141553_3142354_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AUR74891.1|3142415_3144491_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AUR74892.1|3144655_3147031_+	protein tex	NA	NA	NA	NA	NA
AUR74893.1|3147111_3148467_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AUR74894.1|3148476_3149427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74895.1|3149575_3149902_-	DUF3325 domain-containing protein	NA	NA	NA	NA	NA
AUR74896.1|3151546_3151855_-	iron transporter	NA	NA	NA	NA	NA
AUR74897.1|3151971_3154449_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AUR74898.1|3154542_3155505_-	signal transduction protein	NA	NA	NA	NA	NA
AUR74899.1|3155497_3156031_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AUR74900.1|3156752_3157703_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74901.1|3158170_3158893_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUR74902.1|3158947_3159931_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR74903.1|3160060_3161011_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74904.1|3161007_3161910_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR74905.1|3161997_3162756_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AUR74906.1|3162768_3163917_-	cell division protein ZapE	NA	NA	NA	NA	NA
AUR74907.1|3163957_3165385_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AUR74908.1|3165614_3166829_-	dihydrolipoamide succinyltransferase	NA	NA	NA	NA	NA
AUR74909.1|3166874_3169745_-	2-oxoglutarate dehydrogenase subunit E1	NA	NA	NA	NA	NA
AUR74910.1|3172155_3172644_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUR74911.1|3172769_3175466_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AUR74912.1|3175620_3177903_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AUR74913.1|3178072_3178705_+	fimbrial protein	NA	NA	NA	NA	NA
AUR74914.1|3178803_3179754_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
>prophage 26
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	3200623	3313989	4314502	holin,tRNA,transposase	uncultured_Mediterranean_phage(18.75%)	97	NA	NA
AUR74928.1|3200623_3202144_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AUR74929.1|3202186_3202489_+	hypothetical protein	NA	NA	NA	NA	NA
AUR74930.1|3202485_3203118_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUR74931.1|3203196_3205062_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AUR74932.1|3205058_3205874_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AUR74933.1|3205881_3206997_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR74934.1|3207901_3208780_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR74935.1|3208779_3209604_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AUR74936.1|3209771_3210722_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74937.1|3210904_3213784_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AUR74938.1|3213765_3214542_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AUR74939.1|3216095_3216467_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74940.1|3216484_3217798_+	hypothetical protein	NA	NA	NA	NA	NA
AUR74941.1|3217834_3218293_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AUR74942.1|3218405_3219356_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74943.1|3219352_3220366_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AUR74944.1|3220505_3221492_+	homoserine kinase	NA	NA	NA	NA	NA
AUR74945.1|3221535_3222336_+	hypothetical protein	NA	NA	NA	NA	NA
AUR74946.1|3223138_3224089_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74947.1|3224240_3224843_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74948.1|3224861_3225494_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AUR74949.1|3225731_3227618_+	cell division protein FtsH	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AUR74950.1|3227636_3228479_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AUR74951.1|3228475_3229834_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AUR74952.1|3230054_3230849_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUR74953.1|3231079_3232573_-	exopolyphosphatase	NA	NA	NA	NA	NA
AUR74954.1|3232808_3234890_+	RNA degradosome polyphosphate kinase	NA	NA	NA	NA	NA
AUR74955.1|3235084_3236125_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AUR74956.1|3236259_3237276_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AUR74957.1|3237297_3238155_+	phosphate ABC transporter permease	NA	NA	NA	NA	NA
AUR76031.1|3238199_3238976_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AUR74958.1|3239343_3240294_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74959.1|3240392_3241343_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74960.1|3241369_3241834_-	barstar family protein 2	NA	NA	NA	NA	NA
AUR74961.1|3245445_3246318_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74962.1|3246360_3247515_+	aminotransferase	NA	NA	NA	NA	NA
AUR74963.1|3247549_3248380_-	transglycosylase	NA	NA	NA	NA	NA
AUR74964.1|3248463_3250008_+	3-octaprenyl-4-hydroxybenzoate decarboxylase	NA	NA	NA	NA	NA
AUR74965.1|3250050_3250410_-	hypothetical protein	NA	NA	NA	NA	NA
AUR74966.1|3250411_3250825_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AUR74967.1|3250865_3251183_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AUR74968.1|3251267_3251984_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76032.1|3252247_3253669_+	siroheme synthase	NA	NA	NA	NA	NA
AUR74969.1|3253735_3256468_-	pertactin	NA	NA	NA	NA	NA
AUR74970.1|3256800_3257817_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR76033.1|3258152_3258794_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AUR74971.1|3258884_3260321_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
AUR74972.1|3260478_3261552_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AUR74973.1|3261548_3262685_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AUR74974.1|3262829_3263174_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AUR74975.1|3263240_3265121_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AUR74976.1|3265170_3266106_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AUR74977.1|3266437_3267454_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR74978.1|3268391_3269819_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AUR74979.1|3269815_3270838_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AUR74980.1|3270827_3271301_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AUR74981.1|3271426_3272329_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AUR74982.1|3272325_3273969_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AUR76034.1|3273965_3274973_-	aldo/keto reductase	NA	NA	NA	NA	NA
AUR74983.1|3275803_3276820_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR74984.1|3276919_3277552_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AUR74985.1|3277560_3277950_-	response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AUR74986.1|3278002_3279055_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AUR74987.1|3279918_3281625_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AUR74988.1|3281698_3282199_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AUR74989.1|3282213_3284271_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AUR74990.1|3284297_3284591_-	response regulator	NA	NA	NA	NA	NA
AUR74991.1|3284692_3285640_-	chemotaxis protein MotB	NA	NA	NA	NA	NA
AUR74992.1|3285652_3286528_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AUR74993.1|3286648_3287209_-	transcriptional activator FlhC	NA	NA	NA	NA	NA
AUR74994.1|3287243_3287567_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AUR74995.1|3288002_3288740_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AUR74996.1|3289038_3289989_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74997.1|3290087_3291038_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR74998.1|3291281_3291545_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AUR74999.1|3291618_3291900_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75000.1|3291916_3292777_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AUR75001.1|3292773_3293109_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75002.1|3293162_3293813_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AUR75003.1|3294018_3294969_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76035.1|3295052_3296522_+	anion permease	NA	NA	NA	NA	NA
AUR75004.1|3296542_3297487_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75005.1|3297532_3297850_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUR75006.1|3297852_3298791_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AUR75007.1|3298968_3299454_+	N-acetyltransferase	NA	NA	NA	NA	NA
AUR75008.1|3299472_3300021_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AUR75009.1|3300297_3301431_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75010.1|3301468_3302176_+	glutathione S-transferase	NA	NA	NA	NA	NA
AUR76036.1|3302330_3304679_+	3-hydroxyalkanoate synthetase	NA	NA	NA	NA	NA
AUR75011.1|3304675_3305614_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
AUR75012.1|3305639_3306830_+	acetate kinase	NA	NA	NA	NA	NA
AUR75013.1|3306826_3307600_+	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUR75014.1|3307629_3308823_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AUR75015.1|3308940_3309951_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AUR75016.1|3309968_3312005_-	transketolase	NA	NA	NA	NA	NA
AUR75017.1|3312199_3312940_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AUR75018.1|3313038_3313989_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	3379811	3449437	4314502	transposase	Staphylococcus_phage(28.57%)	59	NA	NA
AUR75070.1|3379811_3380762_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76039.1|3380891_3381284_+	HicB family protein	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AUR75071.1|3381560_3382472_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AUR75072.1|3382596_3383571_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR75073.1|3383605_3383965_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75074.1|3385211_3385634_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75075.1|3385638_3386622_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR75076.1|3386618_3388292_+	ATP-dependent acyl-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.9	2.4e-20
AUR75077.1|3388385_3388961_+	restriction endonuclease	NA	NA	NA	NA	NA
AUR75078.1|3388985_3389975_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76040.1|3390110_3391088_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR75079.1|3391213_3392287_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75080.1|3392364_3393225_+	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase	NA	NA	NA	NA	NA
AUR75081.1|3393279_3394176_-	TrmB family transcriptional regulator	NA	NA	NA	NA	NA
AUR75082.1|3394217_3395033_-	phosphosulfolactate synthase	NA	NA	NA	NA	NA
AUR75083.1|3395146_3396379_+	methylitaconate delta2-delta3-isomerase	NA	NA	NA	NA	NA
AUR75084.1|3396421_3397606_+	tricarballylate utilization protein TcuB	NA	NA	NA	NA	NA
AUR75085.1|3397626_3399030_+	tricarballylate dehydrogenase	NA	NA	NA	NA	NA
AUR75086.1|3399079_3400534_-	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUR75087.1|3400638_3402060_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AUR75088.1|3402962_3403790_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR75089.1|3403786_3404659_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR75090.1|3404678_3405653_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75091.1|3406930_3407482_+	decarboxylase	NA	NA	NA	NA	NA
AUR75092.1|3407569_3408520_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75093.1|3408618_3409704_-	DNA polymerase IV	NA	NA	NA	NA	NA
AUR75094.1|3409801_3410212_+	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
AUR75095.1|3410827_3412741_+	S9 family peptidase	NA	NA	NA	NA	NA
AUR75096.1|3415491_3416226_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.6	3.8e-63
AUR75097.1|3416389_3417571_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
AUR75098.1|3417567_3417780_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75099.1|3417776_3418757_-	oxidoreductase	NA	NA	NA	NA	NA
AUR75100.1|3418802_3419630_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AUR75101.1|3419776_3421594_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AUR75102.1|3421648_3422032_+	ferredoxin	NA	NA	NA	NA	NA
AUR75103.1|3422028_3422979_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75104.1|3423090_3423342_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75105.1|3423535_3423751_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75106.1|3423847_3424966_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AUR75107.1|3425085_3425298_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75108.1|3425457_3425679_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75109.1|3425731_3426682_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75110.1|3427858_3429229_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AUR75111.1|3429261_3430053_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR75112.1|3430065_3431121_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75113.1|3431146_3432022_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75114.1|3432127_3432376_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75115.1|3432410_3433865_-	carboxylase	NA	NA	NA	NA	NA
AUR75116.1|3433861_3434383_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA	NA
AUR75117.1|3434411_3435764_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AUR75118.1|3441028_3442330_+	phospholipase	NA	NA	NA	NA	NA
AUR75119.1|3442344_3443061_-	flagellar brake protein	NA	NA	NA	NA	NA
AUR75120.1|3443342_3444023_+	lipoprotein	NA	NA	NA	NA	NA
AUR75121.1|3444034_3444202_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75122.1|3444310_3444463_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75123.1|3444550_3445210_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AUR75124.1|3445590_3447441_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AUR75125.1|3447437_3448388_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75126.1|3448486_3449437_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	3487771	3537024	4314502	holin,transposase	Vibrio_phage(50.0%)	39	NA	NA
AUR75159.1|3487771_3488722_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76041.1|3488694_3489294_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUR75160.1|3489295_3489730_+	thioesterase	NA	NA	NA	NA	NA
AUR75161.1|3489726_3490161_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75162.1|3490144_3490948_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AUR75163.1|3490964_3491780_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AUR76042.1|3491776_3492592_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AUR75164.1|3492738_3493440_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR75165.1|3493467_3495426_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AUR75166.1|3495508_3496459_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75167.1|3496679_3497348_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR75168.1|3497471_3498578_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUR75169.1|3501689_3503183_+	RND transporter	NA	NA	NA	NA	NA
AUR75170.1|3503197_3503869_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUR75171.1|3503912_3504407_-	azurin	NA	NA	NA	NA	NA
AUR75172.1|3504547_3505195_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR76043.1|3505298_3507347_+	hydantoinase	NA	NA	NA	NA	NA
AUR75173.1|3507343_3509356_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUR76044.1|3509381_3510716_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUR75174.1|3510824_3511817_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR75175.1|3511883_3513968_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AUR75176.1|3513992_3514964_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR75177.1|3515092_3516094_-	peptidase M14	NA	NA	NA	NA	NA
AUR75178.1|3516127_3517369_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUR75179.1|3517449_3518373_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AUR75180.1|3518450_3519275_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUR75181.1|3519471_3520488_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR75182.1|3520684_3521668_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR75183.1|3523266_3524655_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AUR75184.1|3524685_3525675_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR75185.1|3525785_3527018_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AUR75186.1|3527299_3528100_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR75187.1|3528122_3530354_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AUR75188.1|3531141_3531588_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AUR75189.1|3531609_3532356_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AUR75190.1|3532499_3533477_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AUR75191.1|3534110_3534722_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AUR75192.1|3534715_3535933_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AUR75193.1|3536073_3537024_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	3549062	3588445	4314502	transposase,tRNA,terminase	Synechococcus_phage(18.18%)	42	NA	NA
AUR75203.1|3549062_3549665_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AUR75204.1|3549787_3550030_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AUR76046.1|3550035_3551091_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AUR75205.1|3551119_3552538_-	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AUR75206.1|3552540_3553818_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AUR76047.1|3553804_3554254_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AUR75207.1|3554929_3555880_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75208.1|3555897_3556119_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75209.1|3556133_3556832_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75210.1|3556824_3557145_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76048.1|3557624_3558236_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AUR75211.1|3558301_3558514_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75212.1|3558765_3559716_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75213.1|3559814_3560888_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75214.1|3561055_3561850_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR75215.1|3561889_3562414_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75216.1|3562406_3564149_-	sulfite reductase	NA	NA	NA	NA	NA
AUR75217.1|3564358_3565117_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AUR75218.1|3565119_3565827_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AUR75219.1|3565843_3566725_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR75220.1|3566735_3567494_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR76049.1|3567462_3568218_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76050.1|3568287_3569706_+	amidase	NA	NA	NA	NA	NA
AUR75221.1|3569727_3570378_-	carbonic anhydrase	NA	NA	NA	NA	NA
AUR75222.1|3570511_3570847_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AUR75223.1|3570935_3571886_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75224.1|3571962_3573783_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AUR75225.1|3573787_3574861_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AUR75226.1|3574983_3575952_+	serine dehydratase	NA	NA	NA	NA	NA
AUR75227.1|3576025_3576937_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AUR75228.1|3576955_3577528_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AUR75229.1|3577608_3578157_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AUR75230.1|3578156_3579746_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AUR75231.1|3579815_3580055_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUR75232.1|3580095_3581127_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AUR75233.1|3581186_3582368_-	monooxygenase	NA	NA	NA	NA	NA
AUR75234.1|3582464_3582917_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75235.1|3582926_3584267_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AUR75236.1|3584583_3585621_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75237.1|3586002_3586362_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75238.1|3586445_3587396_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75239.1|3587494_3588445_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	3761934	3804143	4314502	tail,tRNA,transposase	uncultured_Caudovirales_phage(25.0%)	50	NA	NA
AUR75390.1|3761934_3762885_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75391.1|3763001_3764069_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
AUR75392.1|3764144_3767273_-	ribonuclease E/G	NA	NA	NA	NA	NA
AUR75393.1|3767780_3768746_+	23S rRNA pseudouridine(955/2504/2580) synthase	NA	NA	NA	NA	NA
AUR75394.1|3768748_3769420_+	hydrolase	NA	NA	NA	NA	NA
AUR75395.1|3769576_3770536_+	mononuclear molybdenum enzyme YedY	NA	NA	NA	NA	NA
AUR75396.1|3770543_3771206_+	sulfoxide reductase heme-binding subunit YedZ	NA	NA	NA	NA	NA
AUR75397.1|3771202_3772153_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75398.1|3772251_3773202_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75399.1|3773219_3773867_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AUR75400.1|3773876_3774128_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75401.1|3774190_3774673_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AUR75402.1|3774674_3774875_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75403.1|3774874_3775270_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AUR75404.1|3775266_3775665_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AUR75405.1|3775661_3776084_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75406.1|3776091_3776592_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AUR75407.1|3776846_3777365_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AUR75408.1|3777374_3777704_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AUR75409.1|3777721_3778012_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AUR75410.1|3778037_3780650_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AUR75411.1|3780659_3781019_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75412.1|3781086_3781620_+	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AUR75413.1|3781616_3782006_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AUR75414.1|3781998_3785955_+	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AUR75415.1|3785959_3786376_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75416.1|3786594_3786858_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AUR75417.1|3786857_3787670_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75418.1|3787674_3787917_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75419.1|3787895_3788447_+	lysozyme	NA	NA	NA	NA	NA
AUR75420.1|3788428_3788962_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76059.1|3788958_3789240_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75421.1|3789582_3789783_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75422.1|3789789_3790461_-	DUF159 family protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AUR76060.1|3790816_3791503_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AUR75423.1|3791483_3792056_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AUR75424.1|3792121_3793852_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AUR75425.1|3793904_3794333_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUR75426.1|3794335_3795016_+	protein TolQ	NA	NA	NA	NA	NA
AUR75427.1|3795015_3795474_+	protein TolR	NA	NA	NA	NA	NA
AUR75428.1|3795510_3796485_+	protein TolA	NA	NA	NA	NA	NA
AUR75429.1|3796501_3797818_+	protein TolB	NA	NA	NA	NA	NA
AUR75430.1|3797849_3798347_+	peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
AUR75431.1|3798433_3799123_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AUR75432.1|3799122_3800172_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR75433.1|3800168_3800963_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AUR75434.1|3801131_3801482_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75435.1|3801457_3802015_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR75436.1|3802939_3803158_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75437.1|3803144_3804143_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	4031314	4084829	4314502	tRNA,transposase	Bacillus_phage(28.57%)	44	NA	NA
AUR75634.1|4031314_4032265_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75635.1|4033308_4033587_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75636.1|4034729_4035305_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AUR75637.1|4035340_4037020_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AUR75638.1|4037016_4038768_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AUR75639.1|4038764_4038890_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AUR75640.1|4038903_4040058_-	cytochrome D ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AUR75641.1|4040073_4041693_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUR75642.1|4041776_4042322_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR75643.1|4042881_4043832_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75644.1|4044562_4045543_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR75645.1|4045556_4046681_+	CoA transferase	NA	NA	NA	NA	NA
AUR75646.1|4046688_4048443_-	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
AUR75647.1|4048549_4049449_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR75648.1|4049513_4050497_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AUR75649.1|4050632_4051613_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75650.1|4051629_4053021_-	class II fumarate hydratase	NA	NA	NA	NA	NA
AUR75651.1|4053172_4053709_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AUR76073.1|4053780_4055025_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AUR75652.1|4055167_4055806_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75653.1|4055892_4057782_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	2.5e-79
AUR75654.1|4057778_4058720_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AUR75655.1|4058825_4059875_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AUR75656.1|4060127_4060829_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AUR75657.1|4060825_4061524_+	HAD family hydrolase	NA	NA	NA	NA	NA
AUR75658.1|4061524_4062880_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AUR75659.1|4062876_4063368_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AUR75660.1|4063386_4064343_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR75661.1|4065753_4067856_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75662.1|4068026_4069070_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR75663.1|4069113_4069857_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR75664.1|4070878_4071289_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AUR75665.1|4072238_4073036_+	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUR75666.1|4073134_4074085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76074.1|4074057_4074999_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75667.1|4074995_4075946_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75668.1|4076060_4077062_-	restriction endonuclease	NA	NA	NA	NA	NA
AUR75669.1|4077152_4077719_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AUR75670.1|4078037_4079951_+	phosphomethylpyrimidine synthase	NA	NA	NA	NA	NA
AUR75671.1|4079992_4081423_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AUR75672.1|4081535_4082948_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AUR75673.1|4082964_4083660_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AUR75674.1|4083712_4083892_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75675.1|4083878_4084829_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4314502	4215735	4290105	4314502	transposase	uncultured_Mediterranean_phage(16.67%)	56	NA	NA
AUR75800.1|4215735_4216686_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75801.1|4216682_4217873_-	voltage-gated potassium channel TrkA	NA	NA	NA	NA	NA
AUR75802.1|4217994_4218759_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
AUR75803.1|4218845_4219949_-	AI-2E family transporter	NA	NA	NA	NA	NA
AUR75804.1|4220140_4221157_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR75805.1|4221438_4221927_+	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AUR75806.1|4223270_4223951_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AUR75807.1|4224012_4224864_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AUR75808.1|4224860_4225736_-	thiazole synthase	NA	NA	NA	NA	NA
AUR75809.1|4225761_4226655_-	cobalamin-binding protein	NA	NA	NA	NA	NA
AUR75810.1|4226666_4228556_-	hypothetical protein	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AUR75811.1|4228892_4232666_+	5-methyltetrahydrofolate--homocysteine methyltransferase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AUR75812.1|4232662_4233613_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75813.1|4233711_4234662_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75814.1|4234970_4235663_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AUR75815.1|4236036_4236537_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
AUR75816.1|4236643_4237564_+	bestrophin	NA	NA	NA	NA	NA
AUR75817.1|4237580_4238057_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUR75818.1|4238150_4240001_+	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AUR75819.1|4240056_4240815_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AUR76079.1|4240842_4242315_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AUR75820.1|4242349_4243129_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AUR75821.1|4243141_4243975_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR75822.1|4243983_4244757_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AUR75823.1|4244753_4245818_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR75824.1|4245969_4248597_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AUR75825.1|4248660_4251282_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75826.1|4252209_4252668_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75827.1|4252946_4255190_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AUR75828.1|4255386_4257411_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AUR75829.1|4257534_4258497_-	immunogenic protein	NA	NA	NA	NA	NA
AUR75830.1|4258708_4259848_+	alanine racemase	NA	NA	NA	NA	NA
AUR75831.1|4259870_4260836_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AUR75832.1|4261031_4262222_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AUR75833.1|4262235_4262481_+	hypothetical protein	NA	NA	NA	NA	NA
AUR75834.1|4262509_4264531_-	3-methylcrotonyl-CoA carboxylase	NA	NA	NA	NA	NA
AUR76080.1|4264577_4266185_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
AUR75835.1|4269400_4270273_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUR75836.1|4270336_4271287_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR75837.1|4271443_4271767_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AUR75838.1|4271871_4272921_-	cyclase	NA	NA	NA	NA	NA
AUR75839.1|4272917_4273742_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AUR75840.1|4273742_4274039_-	hypothetical protein	NA	NA	NA	NA	NA
AUR75841.1|4274064_4274340_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AUR75842.1|4274396_4275041_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AUR75843.1|4275040_4275727_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUR76081.1|4275856_4276708_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUR75844.1|4276758_4277484_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUR75845.1|4277515_4278865_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUR75846.1|4278976_4279909_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUR75847.1|4280366_4283162_-	peptidase S8	NA	NA	NA	NA	NA
AUR75848.1|4283755_4286698_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AUR75849.1|4286769_4287489_+	7-cyano-7-deazaguanine synthase	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AUR75850.1|4287527_4288076_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AUR75851.1|4288230_4289130_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AUR75852.1|4289154_4290105_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
