assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002892765.1_ASM289276v1	CP022361	Bordetella pertussis strain B199 chromosome, complete genome	1	482519-482612	1	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,cas3,DinG	Unclear	GTGCCTGTCCCCGCCGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG	NA,NA	NA|353aa|up_9|CP022361.1_469858_470917_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|165aa|up_8|CP022361.1_471046_471541_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|326aa|up_7|CP022361.1_471633_472611_+	pfam00665, rve, Integrase core domain	NA|402aa|up_6|CP022361.1_472806_474012_+	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|504aa|up_5|CP022361.1_474008_475520_+	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|438aa|up_4|CP022361.1_475535_476849_-	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|60aa|up_3|CP022361.1_477039_477219_-	pfam04391, DUF533, Protein of unknown function (DUF533)	DEDDh|245aa|up_2|CP022361.1_477628_478363_-	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional	NA|317aa|up_1|CP022361.1_480807_481758_+	pfam00665, rve, Integrase core domain	NA|133aa|up_0|CP022361.1_481889_482288_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|157aa|down_0|CP022361.1_482698_483169_-	pfam00582, Usp, Universal stress protein family	NA|115aa|down_1|CP022361.1_483257_483602_-	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|467aa|down_2|CP022361.1_483701_485102_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|173aa|down_3|CP022361.1_486890_487409_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|252aa|down_4|CP022361.1_487519_488275_+	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|411aa|down_5|CP022361.1_488470_489703_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|262aa|down_6|CP022361.1_489695_490481_+	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|324aa|down_7|CP022361.1_490547_491519_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|326aa|down_8|CP022361.1_491529_492507_-	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|391aa|down_9|CP022361.1_492632_493805_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26
GCA_002892765.1_ASM289276v1	CP022361	Bordetella pertussis strain B199 chromosome, complete genome	2	714711-714820	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG	Orphan	GGGGACAGATACCGTCTTGGCCGTCAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG	NA,NA	NA|272aa|up_9|CP022361.1_701639_702455_-	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|293aa|up_8|CP022361.1_702567_703446_-	PRK00030, minC, septum site-determining protein MinC	NA|588aa|up_7|CP022361.1_703557_705321_-	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional	NA|447aa|up_6|CP022361.1_705436_706777_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|475aa|up_5|CP022361.1_707846_709271_-	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|234aa|up_4|CP022361.1_709270_709972_-	PRK09468, ompR, osmolarity response regulator; Provisional	NA|317aa|up_3|CP022361.1_711476_712427_+	pfam00665, rve, Integrase core domain	NA|333aa|up_2|CP022361.1_712495_713494_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|227aa|up_1|CP022361.1_713498_714179_-	pfam04391, DUF533, Protein of unknown function (DUF533)	NA|131aa|up_0|CP022361.1_714316_714709_+	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_0|CP022361.1_716072_716858_-	PRK06997, PRK06997, enoyl-[acyl-carrier-protein] reductase FabI	NA|470aa|down_1|CP022361.1_716952_718362_-	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional	NA|267aa|down_2|CP022361.1_718372_719173_-	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase	NA|257aa|down_3|CP022361.1_719193_719964_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|156aa|down_4|CP022361.1_720006_720474_+	PRK00203, rnhA, ribonuclease H; Reviewed	NA|317aa|down_5|CP022361.1_720470_721421_-	pfam00665, rve, Integrase core domain	NA|293aa|down_6|CP022361.1_723369_724248_-	pfam00487, FA_desaturase, Fatty acid desaturase	NA|317aa|down_7|CP022361.1_728506_729457_+	pfam00665, rve, Integrase core domain	NA|363aa|down_8|CP022361.1_729453_730542_-	cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like proteins (5beta-POR), atypical (a) SDRs	NA|288aa|down_9|CP022361.1_730577_731441_-	PLN02864, PLN02864, enoyl-CoA hydratase
GCA_002892765.1_ASM289276v1	CP022361	Bordetella pertussis strain B199 chromosome, complete genome	3	1902193-1902320	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG	Orphan	AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCG	46	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG	NA|93aa|up_3|CP022361.1_1899570_1899849_+,NA|120aa|up_1|CP022361.1_1900782_1901142_-,NA	NA|386aa|up_9|CP022361.1_1892798_1893956_+	PRK06158, PRK06158, thiolase; Provisional	NA|259aa|up_8|CP022361.1_1893977_1894754_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|239aa|up_7|CP022361.1_1896918_1897635_+	TIGR02429, 3-oxoadipate_CoA-transferase_subunit_A, 3-oxoacid CoA-transferase, A subunit	NA|214aa|up_6|CP022361.1_1897627_1898269_+	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|244aa|up_5|CP022361.1_1898303_1899035_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|71aa|up_4|CP022361.1_1899052_1899265_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|93aa|up_3|CP022361.1_1899570_1899849_+	NA	NA|317aa|up_2|CP022361.1_1899835_1900786_+	pfam00665, rve, Integrase core domain	NA|120aa|up_1|CP022361.1_1900782_1901142_-	NA	NA|310aa|up_0|CP022361.1_1901187_1902117_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|243aa|down_0|CP022361.1_1902343_1903072_-	PRK00215, PRK00215, transcriptional repressor LexA	NA|401aa|down_1|CP022361.1_1903122_1904325_-	PRK09257, PRK09257, aromatic amino acid transaminase	NA|679aa|down_2|CP022361.1_1904402_1906439_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|164aa|down_3|CP022361.1_1906691_1907183_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|171aa|down_4|CP022361.1_1907398_1907911_+	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR	NA|404aa|down_5|CP022361.1_1907928_1909140_+	PRK14012, PRK14012, IscS subfamily cysteine desulfurase	NA|137aa|down_6|CP022361.1_1909177_1909588_+	PRK11325, PRK11325, scaffold protein; Provisional	NA|108aa|down_7|CP022361.1_1909589_1909913_+	TIGR02011, Protein_yfhF	NA|171aa|down_8|CP022361.1_1909915_1910428_+	PRK03578, hscB, Fe-S protein assembly co-chaperone HscB	NA|621aa|down_9|CP022361.1_1910557_1912420_+	PRK05183, hscA, chaperone protein HscA; Provisional
GCA_002892765.1_ASM289276v1	CP022361	Bordetella pertussis strain B199 chromosome, complete genome	4	3189387-3189503	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG	Orphan	TTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA	34	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG	NA|59aa|up_0|CP022361.1_3189169_3189346_-,NA|101aa|down_8|CP022361.1_3202186_3202489_+	NA|899aa|up_9|CP022361.1_3172769_3175466_+	PRK13012, PRK13012, 2-oxoacid dehydrogenase subunit E1; Provisional	NA|761aa|up_8|CP022361.1_3175620_3177903_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|211aa|up_7|CP022361.1_3178072_3178705_+	pfam16970, FimA, Type-1 fimbrial protein, A	NA|317aa|up_6|CP022361.1_3178803_3179754_+	pfam00665, rve, Integrase core domain	NA|185aa|up_5|CP022361.1_3179800_3180355_-	PRK01885, greB, transcription elongation factor GreB; Reviewed	NA|282aa|up_4|CP022361.1_3180422_3181268_-	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|323aa|up_3|CP022361.1_3181337_3182306_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|825aa|up_2|CP022361.1_3182305_3184780_-	TIGR00361, Recombination_protein_2, DNA internalization-related competence protein ComEC/Rec2	NA|1309aa|up_1|CP022361.1_3184952_3188879_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|59aa|up_0|CP022361.1_3189169_3189346_-	NA	NA|1077aa|down_0|CP022361.1_3189614_3192845_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|276aa|down_1|CP022361.1_3193126_3193954_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|232aa|down_2|CP022361.1_3193987_3194683_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|427aa|down_3|CP022361.1_3194675_3195956_-	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|326aa|down_4|CP022361.1_3195965_3196943_+	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown]	NA|567aa|down_5|CP022361.1_3196924_3198625_+	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|252aa|down_6|CP022361.1_3199861_3200617_+	PRK07023, PRK07023, SDR family oxidoreductase	NA|507aa|down_7|CP022361.1_3200623_3202144_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|101aa|down_8|CP022361.1_3202186_3202489_+	NA	NA|211aa|down_9|CP022361.1_3202485_3203118_-	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain
GCA_002892765.1_ASM289276v1	CP022361	Bordetella pertussis strain B199 chromosome, complete genome	5	4058731-4058815	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG	Orphan	CTGTCCCCGCGGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG	NA,NA	NA|585aa|up_9|CP022361.1_4046688_4048443_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|300aa|up_8|CP022361.1_4048549_4049449_+	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|328aa|up_7|CP022361.1_4049513_4050497_-	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|327aa|up_6|CP022361.1_4050632_4051613_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|464aa|up_5|CP022361.1_4051629_4053021_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|179aa|up_4|CP022361.1_4053172_4053709_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|415aa|up_3|CP022361.1_4053780_4055025_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|213aa|up_2|CP022361.1_4055167_4055806_-	PRK10847, PRK10847, DedA family protein	NA|630aa|up_1|CP022361.1_4055892_4057782_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|314aa|up_0|CP022361.1_4057778_4058720_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|350aa|down_0|CP022361.1_4058825_4059875_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|234aa|down_1|CP022361.1_4060127_4060829_+	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|233aa|down_2|CP022361.1_4060825_4061524_+	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|452aa|down_3|CP022361.1_4061524_4062880_+	TIGR01942, pcnB, poly(A) polymerase	NA|164aa|down_4|CP022361.1_4062876_4063368_+	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	NA|319aa|down_5|CP022361.1_4063386_4064343_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|701aa|down_6|CP022361.1_4065753_4067856_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|348aa|down_7|CP022361.1_4068026_4069070_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|248aa|down_8|CP022361.1_4069113_4069857_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|137aa|down_9|CP022361.1_4070878_4071289_-	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase
