The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025959	Rhodococcus sp. djl-6-2 chromosome, complete genome	6518575	2483910	2493350	6518575	integrase	Mycobacterium_phage(62.5%)	18	2481562:2481575	2489064:2489077
2481562:2481575	attL	CAACGATGCGATCT	NA	NA	NA	NA
AUS31668.1|2483910_2485149_-|integrase	site-specific integrase	integrase	G9FH48	Rhodococcus_phage	56.7	1.2e-125
AUS31669.1|2485148_2485898_-	DUF2510 domain-containing protein	NA	A0A142K7G5	Mycobacterium_phage	41.1	1.2e-11
AUS31670.1|2485909_2486146_-	hypothetical protein	NA	NA	NA	NA	NA
AUS31671.1|2486173_2486353_+	hypothetical protein	NA	NA	NA	NA	NA
AUS31672.1|2486377_2486851_-	XRE family transcriptional regulator	NA	A0A2R4AQG6	Mycobacterium_phage	33.3	3.6e-06
AUS31673.1|2487211_2487412_+	hypothetical protein	NA	NA	NA	NA	NA
AUS31674.1|2487480_2487672_+	hypothetical protein	NA	NA	NA	NA	NA
AUS31675.1|2487668_2488673_+	hypothetical protein	NA	A0A097EYS6	Mycobacterium_phage	39.3	1.8e-52
AUS31676.1|2488675_2489515_+	recombinase	NA	M4WNV2	Mycobacterium_phage	53.5	8.1e-70
2489064:2489077	attR	AGATCGCATCGTTG	NA	NA	NA	NA
AUS31677.1|2489514_2490201_+	DNA polymerase III subunit epsilon	NA	I4AZL6	Saccharomonospora_phage	46.4	9.3e-48
AUS31678.1|2490358_2490682_+	hypothetical protein	NA	NA	NA	NA	NA
AUS31679.1|2490678_2491014_+	DUF4326 domain-containing protein	NA	A0A088FBM0	Mycobacterium_phage	55.1	1.1e-25
AUS31680.1|2491010_2491334_+	hypothetical protein	NA	NA	NA	NA	NA
AUS31681.1|2491330_2491564_+	hypothetical protein	NA	NA	NA	NA	NA
AUS31682.1|2491575_2491770_+	hypothetical protein	NA	NA	NA	NA	NA
AUS31683.1|2491890_2492178_-	hypothetical protein	NA	NA	NA	NA	NA
AUS31684.1|2492526_2492811_+	hypothetical protein	NA	NA	NA	NA	NA
AUS31685.1|2492807_2493350_+	hypothetical protein	NA	A0A1B3B032	Gordonia_phage	43.6	3.3e-24
>prophage 2
CP025959	Rhodococcus sp. djl-6-2 chromosome, complete genome	6518575	2503488	2520341	6518575		Rhodococcus_phage(58.33%)	17	NA	NA
AUS31701.1|2503488_2504592_+	hypothetical protein	NA	G9FH84	Rhodococcus_phage	37.7	9.3e-82
AUS31702.1|2504653_2504986_+	hypothetical protein	NA	NA	NA	NA	NA
AUS31703.1|2505128_2505764_+	hypothetical protein	NA	NA	NA	NA	NA
AUS31704.1|2505779_2506961_+	hypothetical protein	NA	A0A2H5BLD0	Streptomyces_phage	41.0	2.3e-54
AUS31705.1|2507164_2507578_+	hypothetical protein	NA	G9FH89	Rhodococcus_phage	54.4	1.1e-30
AUS35298.1|2507592_2507913_+	hypothetical protein	NA	NA	NA	NA	NA
AUS31706.1|2508097_2508421_+	hypothetical protein	NA	G9FH91	Rhodococcus_phage	64.2	8.6e-28
AUS31707.1|2508417_2508879_+	hypothetical protein	NA	G9FH92	Rhodococcus_phage	50.0	6.7e-34
AUS31708.1|2508875_2509622_+	hypothetical protein	NA	G9FH93	Rhodococcus_phage	74.3	3.5e-93
AUS31709.1|2509774_2511910_+	hypothetical protein	NA	NA	NA	NA	NA
AUS31710.1|2511932_2512310_+	hypothetical protein	NA	NA	NA	NA	NA
AUS31711.1|2512342_2512654_+	hypothetical protein	NA	A0A1B3AYP0	Gordonia_phage	39.4	4.0e-06
AUS31712.1|2512653_2513034_+	hypothetical protein	NA	G9FH94	Rhodococcus_phage	38.0	1.7e-11
AUS31713.1|2513073_2517222_+	hypothetical protein	NA	A0A142K8Q7	Gordonia_phage	28.3	2.4e-69
AUS31714.1|2517218_2518040_+	hypothetical protein	NA	A0A142K8Q8	Gordonia_phage	39.4	4.1e-50
AUS31715.1|2518040_2519621_+	hypothetical protein	NA	A0A0U4IA58	Gordonia_phage	40.0	2.1e-95
AUS31716.1|2519630_2520341_+	endolysin	NA	A0A1W6DXS2	Rhodococcus_phage	80.6	1.2e-74
>prophage 3
CP025959	Rhodococcus sp. djl-6-2 chromosome, complete genome	6518575	2556796	2576036	6518575	terminase	Rhodococcus_phage(64.71%)	18	NA	NA
AUS35301.1|2556796_2558077_+|terminase	PBSX family phage terminase large subunit	terminase	G9FH82	Rhodococcus_phage	65.0	4.7e-162
AUS31766.1|2558073_2559669_+	hypothetical protein	NA	G9FH83	Rhodococcus_phage	59.7	6.7e-174
AUS31767.1|2559672_2561760_+	hypothetical protein	NA	G9FH84	Rhodococcus_phage	42.5	9.2e-115
AUS35302.1|2561836_2562145_+	hypothetical protein	NA	A0A1D8EX57	Mycobacterium_phage	54.4	2.8e-20
AUS31768.1|2562287_2562926_+	hypothetical protein	NA	G9FH85	Rhodococcus_phage	54.1	3.3e-07
AUS31769.1|2562941_2564123_+	hypothetical protein	NA	A0A222YXC9	Mycobacterium_phage	35.0	1.0e-38
AUS31770.1|2564352_2564766_+	hypothetical protein	NA	G9FH89	Rhodococcus_phage	55.1	2.4e-30
AUS31771.1|2564768_2565101_+	hypothetical protein	NA	G9FH90	Rhodococcus_phage	63.1	4.7e-29
AUS31772.1|2565251_2565575_+	hypothetical protein	NA	G9FH91	Rhodococcus_phage	61.3	3.0e-25
AUS31773.1|2565571_2566030_+	hypothetical protein	NA	G9FH92	Rhodococcus_phage	53.1	1.3e-37
AUS31774.1|2566026_2566770_+	hypothetical protein	NA	G9FH93	Rhodococcus_phage	75.4	2.4e-94
AUS31775.1|2566800_2567232_+	hypothetical protein	NA	NA	NA	NA	NA
AUS31776.1|2567479_2567884_+	hypothetical protein	NA	G9FH94	Rhodococcus_phage	43.3	8.2e-20
AUS31777.1|2567902_2568457_+	HNH endonuclease	NA	A0A088FQF5	Mycobacterium_phage	47.1	5.2e-25
AUS31778.1|2568612_2572917_+	hypothetical protein	NA	A0A0F6YR17	Mycobacterium_phage	37.3	3.9e-59
AUS31779.1|2572913_2573735_+	hypothetical protein	NA	A0A142K8Q8	Gordonia_phage	39.4	4.1e-50
AUS31780.1|2573735_2575316_+	hypothetical protein	NA	A0A0U4IA58	Gordonia_phage	40.0	2.1e-95
AUS31781.1|2575325_2576036_+	endolysin	NA	A0A1W6DXS2	Rhodococcus_phage	80.6	1.2e-74
>prophage 4
CP025959	Rhodococcus sp. djl-6-2 chromosome, complete genome	6518575	2597656	2605231	6518575		Lactobacillus_phage(16.67%)	9	NA	NA
AUS31804.1|2597656_2598223_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	33.9	4.3e-06
AUS31805.1|2598293_2599121_-	siderophore-interacting protein	NA	NA	NA	NA	NA
AUS31806.1|2599412_2599643_+	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	64.0	1.1e-21
AUS31807.1|2599725_2600205_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A217ER62	Bacillus_phage	30.1	4.5e-09
AUS35304.1|2600186_2602346_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.0	1.5e-205
AUS31808.1|2602407_2602620_-	hypothetical protein	NA	NA	NA	NA	NA
AUS35305.1|2602632_2603457_-	hypothetical protein	NA	NA	NA	NA	NA
AUS31809.1|2603720_2604686_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0N7CCA3	Skermania_phage	86.8	7.7e-157
AUS31810.1|2604757_2605231_-	NUDIX domain-containing protein	NA	D0R7J3	Paenibacillus_phage	31.9	6.7e-13
>prophage 5
CP025959	Rhodococcus sp. djl-6-2 chromosome, complete genome	6518575	4583951	4607430	6518575	head,capsid,portal	Gordonia_phage(28.57%)	27	NA	NA
AUS33355.1|4583951_4585541_-	hypothetical protein	NA	Q5ZGD1	Flavobacterium_phage	37.0	8.0e-18
AUS33356.1|4585537_4585861_-	hypothetical protein	NA	A0A1B3AYA3	Gordonia_phage	43.1	9.5e-19
AUS33357.1|4585860_4586361_-	hypothetical protein	NA	NA	NA	NA	NA
AUS33358.1|4586360_4586984_-	hypothetical protein	NA	NA	NA	NA	NA
AUS33359.1|4586985_4588035_-	hypothetical protein	NA	NA	NA	NA	NA
AUS33360.1|4588038_4588335_-	hypothetical protein	NA	NA	NA	NA	NA
AUS33361.1|4588338_4589172_-	hypothetical protein	NA	A0A166Y351	Gordonia_phage	46.6	2.7e-17
AUS33362.1|4589174_4589525_-	hypothetical protein	NA	A0A2P1JXV5	Rhodococcus_phage	56.1	7.4e-25
AUS33363.1|4590661_4591309_-	DUF2744 domain-containing protein	NA	G8I4D2	Mycobacterium_phage	36.1	6.3e-14
AUS33364.1|4591257_4592940_-	hypothetical protein	NA	G1BSP2	Mycobacterium_virus	48.2	2.5e-155
AUS33365.1|4592946_4593888_-	hypothetical protein	NA	G8I4D0	Mycobacterium_phage	44.7	2.9e-68
AUS33366.1|4593910_4599034_-	hypothetical protein	NA	A0A2H4JDP5	uncultured_Caudovirales_phage	31.5	5.0e-146
AUS33367.1|4599051_4599609_-	Hin recombinase	NA	NA	NA	NA	NA
AUS33368.1|4599656_4600031_-	hypothetical protein	NA	A0A2H4JI68	uncultured_Caudovirales_phage	48.8	5.6e-23
AUS33369.1|4600173_4601001_-	hypothetical protein	NA	A0A2H4PEW8	Gordonia_phage	52.3	5.6e-39
AUS33370.1|4601055_4601451_-	hypothetical protein	NA	A0A2H4PEX0	Gordonia_phage	42.8	9.2e-24
AUS33371.1|4601443_4601713_-	hypothetical protein	NA	NA	NA	NA	NA
AUS33372.1|4601712_4602081_-	hypothetical protein	NA	NA	NA	NA	NA
AUS33373.1|4602068_4602491_-	hypothetical protein	NA	NA	NA	NA	NA
AUS33374.1|4602511_4602889_-	hypothetical protein	NA	NA	NA	NA	NA
AUS33375.1|4602888_4603917_-|capsid	major capsid protein E	capsid	A0A0K1Y5W3	Streptomyces_phage	39.9	9.0e-55
AUS33376.1|4603929_4604298_-|head	head decoration protein	head	Q6VY52	Streptomyces_phage	50.8	2.7e-25
AUS33377.1|4604326_4604794_-	hypothetical protein	NA	NA	NA	NA	NA
AUS33378.1|4604792_4604972_+	hypothetical protein	NA	NA	NA	NA	NA
AUS33379.1|4605050_4605254_-	hypothetical protein	NA	NA	NA	NA	NA
AUS33380.1|4605302_4605962_-	hypothetical protein	NA	NA	NA	NA	NA
AUS33381.1|4605942_4607430_-|portal	portal protein	portal	A0A159B6N0	Tsukamurella_phage	57.7	2.5e-138
>prophage 6
CP025959	Rhodococcus sp. djl-6-2 chromosome, complete genome	6518575	5190183	5199391	6518575		Mycobacterium_phage(66.67%)	6	NA	NA
AUS35534.1|5190183_5194890_+	hypothetical protein	NA	A0A2R4AQL8	Mycobacterium_phage	40.5	8.6e-52
AUS33904.1|5194890_5195766_+	hypothetical protein	NA	A0A0M4QZS7	Mycobacterium_phage	34.8	1.2e-36
AUS33905.1|5195762_5197496_+	hypothetical protein	NA	S5Y4V1	Mycobacterium_phage	48.7	5.1e-151
AUS33906.1|5197515_5198031_+	hypothetical protein	NA	A0A220NQQ4	Corynebacterium_phage	44.3	2.3e-14
AUS33907.1|5198027_5199098_+	hypothetical protein	NA	Q856D3	Mycobacterium_phage	47.9	7.1e-87
AUS33908.1|5199097_5199391_+	hypothetical protein	NA	A0A2K9VEK4	Gordonia_phage	53.2	3.0e-19
>prophage 7
CP025959	Rhodococcus sp. djl-6-2 chromosome, complete genome	6518575	5947175	5972728	6518575	tail,terminase,portal,capsid	Mycobacterium_phage(73.33%)	28	NA	NA
AUS34590.1|5947175_5948945_-	hypothetical protein	NA	M9MUD6	Rhodococcus_phage	52.9	5.7e-49
AUS34591.1|5948953_5949427_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34592.1|5949398_5949917_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34593.1|5949904_5950372_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34594.1|5950371_5951259_-	hypothetical protein	NA	Q854L4	Mycobacterium_phage	52.5	1.6e-55
AUS34595.1|5951258_5952986_-	hypothetical protein	NA	A0A1C9EI78	Rhodococcus_phage	34.0	4.3e-41
AUS34596.1|5952985_5953840_-	hypothetical protein	NA	G1D3S3	Mycobacterium_virus	37.8	3.4e-31
AUS35595.1|5953850_5955365_-	hypothetical protein	NA	A0A2D2W365	Mycobacterium_phage	48.2	2.4e-136
AUS34597.1|5955478_5956369_-	hypothetical protein	NA	A0A2D2W363	Mycobacterium_phage	35.6	1.1e-24
AUS34598.1|5956365_5960739_-|tail	phage tail tape measure protein	tail	A0A1U9WS00	Gordonia_phage	63.6	3.4e-42
AUS34599.1|5960750_5961146_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34600.1|5961163_5961484_-	hypothetical protein	NA	A0A1J0GRK1	Mycobacterium_phage	32.0	4.0e-09
AUS34601.1|5961571_5962525_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34602.1|5962536_5962935_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34603.1|5962934_5963297_-	hypothetical protein	NA	A0A249XP47	Mycobacterium_phage	39.2	7.6e-09
AUS34604.1|5963299_5963653_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34605.1|5963649_5964171_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34606.1|5964167_5964365_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34607.1|5964426_5965845_-|capsid	phage major capsid protein	capsid	A0A0K1LIX6	Mycobacterium_phage	49.0	7.3e-79
AUS34608.1|5965841_5966963_-	hypothetical protein	NA	A0A2L1IY03	Mycobacterium_phage	43.1	4.3e-58
AUS34609.1|5966962_5968474_-|portal	phage portal protein	portal	G1JRY9	Mycobacterium_phage	41.2	1.8e-99
AUS34610.1|5968477_5968705_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34611.1|5968720_5970400_-	hypothetical protein	NA	R4JFA8	Mycobacterium_phage	59.4	1.7e-196
AUS34612.1|5970429_5970951_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34613.1|5970947_5971424_-|terminase	phage terminase small subunit P27 family	terminase	A0A0H4U2T7	Mycobacterium_phage	53.8	6.7e-37
AUS34614.1|5971416_5971773_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34615.1|5971769_5972174_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34616.1|5972548_5972728_-	hypothetical protein	NA	A0A2P0ZZY2	Mycobacterium_phage	64.2	1.7e-14
>prophage 8
CP025959	Rhodococcus sp. djl-6-2 chromosome, complete genome	6518575	5977555	5989390	6518575		Mycobacterium_phage(50.0%)	19	NA	NA
AUS34626.1|5977555_5977918_-	hypothetical protein	NA	A0A0K2FMZ9	Mycobacterium_phage	36.5	3.0e-13
AUS34627.1|5978053_5978956_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34628.1|5979089_5979479_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34629.1|5979770_5980097_-	hypothetical protein	NA	A0A2P1N2F9	Mycobacterium_phage	53.3	4.9e-07
AUS34630.1|5980125_5980533_-	hypothetical protein	NA	A0A2P1N324	Mycobacterium_phage	34.1	3.4e-05
AUS34631.1|5980525_5981422_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34632.1|5981425_5981770_-	HNH endonuclease	NA	A0A0B5A2X7	Mycobacterium_phage	44.4	6.6e-18
AUS34633.1|5981766_5982114_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34634.1|5982118_5983249_-	DNA polymerase III subunit beta	NA	G1FMV0	Mycobacterium_virus	28.2	4.2e-21
AUS34635.1|5983261_5984014_-	hypothetical protein	NA	G9FH02	Rhodococcus_phage	32.0	3.9e-23
AUS34636.1|5984010_5984319_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34637.1|5984318_5985260_-	hypothetical protein	NA	A0A1W6JTQ2	Mycobacterium_phage	53.5	7.4e-88
AUS34638.1|5985304_5985676_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34639.1|5985672_5986254_-	hypothetical protein	NA	A0A2H4JDB8	uncultured_Caudovirales_phage	30.7	2.2e-10
AUS34640.1|5986250_5986532_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34641.1|5987163_5987394_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34642.1|5987518_5987770_+	transcriptional regulator	NA	A0A2H4J9W2	uncultured_Caudovirales_phage	40.6	4.2e-06
AUS34643.1|5987766_5987961_-	hypothetical protein	NA	NA	NA	NA	NA
AUS34644.1|5988022_5989390_-	hypothetical protein	NA	A0A2P1N2W7	Gordonia_phage	36.8	8.5e-77
>prophage 1
CP025960	Rhodococcus sp. djl-6-2 plasmid1, complete genome	84619	0	11713	84619	integrase	Salmonella_phage(100.0%)	10	NA	NA
AUS35650.1|317_2795_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
AUS35651.1|2794_4078_-|integrase	integrase	integrase	NA	NA	NA	NA
AUS35720.1|4734_5049_+	hypothetical protein	NA	NA	NA	NA	NA
AUS35652.1|5124_5544_+	hypothetical protein	NA	NA	NA	NA	NA
AUS35653.1|5687_5873_-	hypothetical protein	NA	NA	NA	NA	NA
AUS35721.1|6369_7017_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AUS35722.1|7111_8875_+	hypothetical protein	NA	NA	NA	NA	NA
AUS35654.1|8915_9872_+	biphenyl 2,3-dioxygenase	NA	NA	NA	NA	NA
AUS35655.1|9873_10713_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUS35656.1|11116_11713_-	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	40.9	3.8e-21
>prophage 2
CP025960	Rhodococcus sp. djl-6-2 plasmid1, complete genome	84619	16616	17534	84619		Ochrobactrum_phage(100.0%)	1	NA	NA
AUS35659.1|16616_17534_-	ParA family protein	NA	A0A240F4U1	Ochrobactrum_phage	31.7	2.7e-10
>prophage 3
CP025960	Rhodococcus sp. djl-6-2 plasmid1, complete genome	84619	31673	33371	84619		Mycobacterium_phage(100.0%)	1	NA	NA
AUS35667.1|31673_33371_+	peptidase M23	NA	A0A1D8ERN4	Mycobacterium_phage	41.5	5.7e-22
>prophage 4
CP025960	Rhodococcus sp. djl-6-2 plasmid1, complete genome	84619	54350	54659	84619		Mycobacterium_phage(100.0%)	1	NA	NA
AUS35691.1|54350_54659_-	hypothetical protein	NA	A0A1J0ME36	Mycobacterium_phage	35.8	1.4e-11
>prophage 5
CP025960	Rhodococcus sp. djl-6-2 plasmid1, complete genome	84619	60252	62616	84619		Mycobacterium_phage(100.0%)	2	NA	NA
AUS35698.1|60252_60483_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	64.9	1.2e-20
AUS35699.1|61050_62616_-	chromosome partitioning protein ParB	NA	A0A2H4PED4	Mycobacterium_phage	37.9	2.1e-63
>prophage 6
CP025960	Rhodococcus sp. djl-6-2 plasmid1, complete genome	84619	65890	68463	84619		Stenotrophomonas_phage(50.0%)	3	NA	NA
AUS35706.1|65890_66610_-	hypothetical protein	NA	V9IQW7	Stenotrophomonas_phage	39.7	3.6e-34
AUS35707.1|67248_67461_-	hypothetical protein	NA	NA	NA	NA	NA
AUS35708.1|67614_68463_-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	30.5	1.2e-20
>prophage 7
CP025960	Rhodococcus sp. djl-6-2 plasmid1, complete genome	84619	74369	80308	84619		Mycobacterium_phage(33.33%)	5	NA	NA
AUS35713.1|74369_75791_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	34.1	8.1e-54
AUS35729.1|75991_76621_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUS35714.1|76886_77438_-	hypothetical protein	NA	NA	NA	NA	NA
AUS35715.1|77487_78537_-	hypothetical protein	NA	A0A142KBN9	Gordonia_phage	28.5	4.3e-12
AUS35716.1|78814_80308_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	52.8	7.1e-117
