assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002902925.1_ASM290292v1	CP026111	Paraburkholderia terrae strain DSM 17804 chromosome 1, complete sequence	1	1261064-1261158	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,WYL	Orphan	CGAAGGCAAAGCGCGGATGCCAGCGAAAACGCAA	34	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,PD-DExK	NA|78aa|up_7|CP026111.1_1246776_1247010_+,NA|175aa|down_5|CP026111.1_1267314_1267839_-,NA|76aa|down_6|CP026111.1_1268114_1268342_+	NA|387aa|up_9|CP026111.1_1244620_1245781_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|286aa|up_8|CP026111.1_1245892_1246750_-	PRK14189, PRK14189, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA|78aa|up_7|CP026111.1_1246776_1247010_+	NA	NA|333aa|up_6|CP026111.1_1247092_1248091_-	pfam11453, DUF2950, Protein of unknown function (DUF2950)	NA|433aa|up_5|CP026111.1_1248171_1249470_-	pfam11737, DUF3300, Protein of unknown function (DUF3300)	NA|215aa|up_4|CP026111.1_1250115_1250760_-	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|839aa|up_3|CP026111.1_1250756_1253273_-	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|900aa|up_2|CP026111.1_1253560_1256260_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|554aa|up_1|CP026111.1_1256342_1258004_+	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|687aa|up_0|CP026111.1_1258269_1260330_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|195aa|down_0|CP026111.1_1261399_1261984_-	TIGR01841, hypothetical_protein, phasin family protein	NA|392aa|down_1|CP026111.1_1262756_1263932_+	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional	NA|269aa|down_2|CP026111.1_1263997_1264804_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|241aa|down_3|CP026111.1_1264992_1265715_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|471aa|down_4|CP026111.1_1265794_1267207_+	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]	NA|175aa|down_5|CP026111.1_1267314_1267839_-	NA	NA|76aa|down_6|CP026111.1_1268114_1268342_+	NA	NA|176aa|down_7|CP026111.1_1268448_1268976_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|175aa|down_8|CP026111.1_1269086_1269611_+	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR	NA|408aa|down_9|CP026111.1_1269678_1270902_+	PRK14012, PRK14012, IscS subfamily cysteine desulfurase
GCA_002902925.1_ASM290292v1	CP026111	Paraburkholderia terrae strain DSM 17804 chromosome 1, complete sequence	2	1951025-1951169	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,WYL	Orphan	GCGTTTGCGCTGGCATCCGCGATT	24	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,csa3,DinG,WYL,PD-DExK	NA,NA	NA|2018aa|up_9|CP026111.1_1934474_1940528_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|805aa|up_8|CP026111.1_1940540_1942955_+	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|183aa|up_7|CP026111.1_1943137_1943686_+	pfam12836, HHH_3, Helix-hairpin-helix motif	NA|148aa|up_6|CP026111.1_1943841_1944285_+	COG3753, COG3753, Uncharacterized protein conserved in bacteria [Function unknown]	NA|866aa|up_5|CP026111.1_1944419_1947017_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|166aa|up_4|CP026111.1_1947378_1947876_-	PRK11014, PRK11014, HTH-type transcriptional repressor NsrR	NA|187aa|up_3|CP026111.1_1948113_1948674_+	cd08916, TrHb3_P, Truncated hemoglobins (TrHbs, 2/2Hb, 2/2 globins); group 3 (P)	NA|157aa|up_2|CP026111.1_1948824_1949295_-	cd00756, MoaE, MoaE family	NA|86aa|up_1|CP026111.1_1949315_1949573_-	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism]	NA|411aa|up_0|CP026111.1_1949612_1950845_-	cd00887, MoeA, MoeA family	NA|483aa|down_0|CP026111.1_1952020_1953469_-	PRK09225, PRK09225, threonine synthase; Validated	NA|444aa|down_1|CP026111.1_1953499_1954831_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|416aa|down_2|CP026111.1_1954889_1956137_-	PRK09265, PRK09265, aminotransferase AlaT; Validated	NA|125aa|down_3|CP026111.1_1956707_1957082_+	cd05560, Xcc1710_like, Xcc1710_like family, specific to proteobacteria	NA|611aa|down_4|CP026111.1_1957461_1959294_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|124aa|down_5|CP026111.1_1959322_1959694_+	PRK15051, PRK15051, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional	NA|384aa|down_6|CP026111.1_1959938_1961090_+	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|350aa|down_7|CP026111.1_1961132_1962182_+	PRK10714, PRK10714, undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional	NA|312aa|down_8|CP026111.1_1962178_1963114_+	PRK06988, PRK06988, formyltransferase	NA|349aa|down_9|CP026111.1_1963110_1964157_+	PRK11908, PRK11908, bifunctional UDP-4-keto-pentose/UDP-xylose synthase
GCA_002902925.1_ASM290292v1	CP026112	Paraburkholderia terrae strain DSM 17804 chromosome 2, complete sequence	1	1103867-1103946	1	CRISPRCasFinder	no		csa3,DinG,cas3,WYL	Orphan	TTTTGCGCTGGCATCCGCGATTTG	24	1	3	1103891-1103922|1103891-1103922|1103891-1103922	CP026112.1_1946027-1945996|CP026112.1_1955423-1955454|CP026112.1_1226743-1226774	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,PD-DExK	NA,NA|123aa|down_5|CP026112.1_1109823_1110192_-	NA|155aa|up_9|CP026112.1_1093383_1093848_+	cd17580, REC_2_DhkD-like, second phosphoacceptor receiver (REC) domain of Dictyostelium discoideum hybrid signal transduction histidine kinase D and similar domains	NA|194aa|up_8|CP026112.1_1093879_1094461_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|209aa|up_7|CP026112.1_1094480_1095107_-	PRK11752, PRK11752, putative S-transferase; Provisional	NA|209aa|up_6|CP026112.1_1095109_1095736_-	cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases	NA|558aa|up_5|CP026112.1_1095891_1097565_+	pfam13538, UvrD_C_2, UvrD-like helicase C-terminal domain	NA|316aa|up_4|CP026112.1_1097628_1098576_-	cd06223, PRTases_typeI, Phosphoribosyl transferase (PRT)-type I domain	NA|183aa|up_3|CP026112.1_1098776_1099325_+	COG3915, COG3915, Uncharacterized protein conserved in bacteria [Function unknown]	NA|601aa|up_2|CP026112.1_1099345_1101148_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|285aa|up_1|CP026112.1_1101176_1102031_-	pfam08667, BetR, BetR domain	NA|447aa|up_0|CP026112.1_1102491_1103832_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|246aa|down_0|CP026112.1_1104687_1105425_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|336aa|down_1|CP026112.1_1105621_1106629_+	pfam05544, Pro_racemase, Proline racemase	NA|306aa|down_2|CP026112.1_1106651_1107569_+	PRK07340, PRK07340, delta(1)-pyrroline-2-carboxylate reductase family protein	NA|495aa|down_3|CP026112.1_1107778_1109263_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|112aa|down_4|CP026112.1_1109419_1109755_-	COG4551, COG4551, Predicted protein tyrosine phosphatase [General function prediction only]	NA|123aa|down_5|CP026112.1_1109823_1110192_-	NA	NA|362aa|down_6|CP026112.1_1110388_1111474_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|463aa|down_7|CP026112.1_1111845_1113234_+	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|415aa|down_8|CP026112.1_1113262_1114507_+	TIGR01373, Sarcosine_oxidase_subunit_beta, sarcosine oxidase, beta subunit family, heterotetrameric form	NA|100aa|down_9|CP026112.1_1114529_1114829_+	pfam04267, SoxD, Sarcosine oxidase, delta subunit family
GCA_002902925.1_ASM290292v1	CP026112	Paraburkholderia terrae strain DSM 17804 chromosome 2, complete sequence	2	1167095-1167173	2	CRISPRCasFinder	no		csa3,DinG,cas3,WYL	Orphan	CAAAACGCGGATGCCAGCGCAAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,PD-DExK	NA,NA	NA|340aa|up_9|CP026112.1_1153436_1154456_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|425aa|up_8|CP026112.1_1154990_1156265_+	PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed	NA|324aa|up_7|CP026112.1_1156308_1157280_+	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19)	NA|182aa|up_6|CP026112.1_1157311_1157857_+	smart00989, V4R, The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons	NA|688aa|up_5|CP026112.1_1157941_1160005_+	cd04734, OYE_like_3_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 3	NA|640aa|up_4|CP026112.1_1160007_1161927_+	pfam11982, DUF3483, Domain of unknown function (DUF3483)	NA|393aa|up_3|CP026112.1_1161930_1163109_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_2|CP026112.1_1163105_1163885_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|427aa|up_1|CP026112.1_1163926_1165207_+	cd08884, RHO_alpha_C_GbcA-like, C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases	NA|385aa|up_0|CP026112.1_1165259_1166414_+	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	NA|290aa|down_0|CP026112.1_1167317_1168187_+	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|552aa|down_1|CP026112.1_1168329_1169985_+	pfam13520, AA_permease_2, Amino acid permease	NA|293aa|down_2|CP026112.1_1170041_1170920_-	PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed	NA|309aa|down_3|CP026112.1_1171070_1171997_-	TIGR03418, chol_sulf_TF, putative choline sulfate-utilization transcription factor	NA|514aa|down_4|CP026112.1_1172138_1173680_+	TIGR03417, chol_sulfatase, choline-sulfatase	NA|322aa|down_5|CP026112.1_1173721_1174687_+	TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic binding protein	NA|381aa|down_6|CP026112.1_1174929_1176072_+	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|331aa|down_7|CP026112.1_1176133_1177126_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|317aa|down_8|CP026112.1_1177428_1178379_+	TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic binding protein	NA|310aa|down_9|CP026112.1_1178454_1179384_+	COG3246, COG3246, Uncharacterized conserved protein [Function unknown]
GCA_002902925.1_ASM290292v1	CP026112	Paraburkholderia terrae strain DSM 17804 chromosome 2, complete sequence	3	2048739-2048826	3	CRISPRCasFinder	no		csa3,DinG,cas3,WYL	Orphan	AGGCAAACCAAACCGCTGGCACAGCAAACAC	31	1	1	2048770-2048795	CP026112.1_2048034-2048009	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,PD-DExK	NA|356aa|up_7|CP026112.1_2042309_2043377_+,NA|90aa|up_6|CP026112.1_2043373_2043643_+,NA|168aa|up_5|CP026112.1_2043639_2044143_+,NA|60aa|up_4|CP026112.1_2044135_2044315_+,NA|79aa|up_3|CP026112.1_2044337_2044574_+,NA|73aa|down_2|CP026112.1_2051481_2051700_+,NA|69aa|down_7|CP026112.1_2057015_2057222_-	NA|113aa|up_9|CP026112.1_2041073_2041412_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|304aa|up_8|CP026112.1_2041408_2042320_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|356aa|up_7|CP026112.1_2042309_2043377_+	NA	NA|90aa|up_6|CP026112.1_2043373_2043643_+	NA	NA|168aa|up_5|CP026112.1_2043639_2044143_+	NA	NA|60aa|up_4|CP026112.1_2044135_2044315_+	NA	NA|79aa|up_3|CP026112.1_2044337_2044574_+	NA	NA|99aa|up_2|CP026112.1_2044545_2044842_+	pfam07887, Calmodulin_bind, Calmodulin binding protein-like	NA|566aa|up_1|CP026112.1_2044838_2046536_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|251aa|up_0|CP026112.1_2046920_2047673_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|347aa|down_0|CP026112.1_2049029_2050070_+	pfam13676, TIR_2, TIR domain	NA|229aa|down_1|CP026112.1_2050399_2051086_+	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|73aa|down_2|CP026112.1_2051481_2051700_+	NA	NA|302aa|down_3|CP026112.1_2051837_2052743_+	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins	NA|485aa|down_4|CP026112.1_2052833_2054288_+	PRK07488, PRK07488, indoleacetamide hydrolase	NA|250aa|down_5|CP026112.1_2054294_2055044_+	pfam02611, CDH, CDP-diacylglycerol pyrophosphatase	NA|373aa|down_6|CP026112.1_2055182_2056301_+	cd03509, DesA_FADS-like, Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria	NA|69aa|down_7|CP026112.1_2057015_2057222_-	NA	NA|394aa|down_8|CP026112.1_2057220_2058402_+	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|263aa|down_9|CP026112.1_2058528_2059317_+	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]
GCA_002902925.1_ASM290292v1	CP026112	Paraburkholderia terrae strain DSM 17804 chromosome 2, complete sequence	4	2119629-2119710	4	CRISPRCasFinder	no		csa3,DinG,cas3,WYL	Orphan	GCTGGCATCCGCGATTTGTTAGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,PD-DExK	NA,NA|113aa|down_1|CP026112.1_2121332_2121671_+,NA|105aa|down_2|CP026112.1_2121808_2122123_+,NA|112aa|down_3|CP026112.1_2122165_2122501_-	NA|247aa|up_9|CP026112.1_2105096_2105837_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|797aa|up_8|CP026112.1_2105854_2108245_-	cd16916, HATPase_CheA-like, Histidine kinase-like ATPase domain of the chemotaxis protein histidine kinase CheA, and some hybrid sensor histidine kinases	NA|301aa|up_7|CP026112.1_2108491_2109394_-	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|343aa|up_6|CP026112.1_2109835_2110864_+	cd19973, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate-binding protein	NA|330aa|up_5|CP026112.1_2110997_2111987_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|267aa|up_4|CP026112.1_2112009_2112810_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|408aa|up_3|CP026112.1_2112840_2114064_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|1026aa|up_2|CP026112.1_2114057_2117135_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|426aa|up_1|CP026112.1_2117506_2118784_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|228aa|up_0|CP026112.1_2118901_2119585_+	pfam17938, TetR_C_29, Tetracyclin repressor-like, C-terminal domain	NA|149aa|down_0|CP026112.1_2120500_2120947_-	PRK13015, PRK13015, 3-dehydroquinate dehydratase; Reviewed	NA|113aa|down_1|CP026112.1_2121332_2121671_+	NA	NA|105aa|down_2|CP026112.1_2121808_2122123_+	NA	NA|112aa|down_3|CP026112.1_2122165_2122501_-	NA	NA|259aa|down_4|CP026112.1_2122606_2123383_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|428aa|down_5|CP026112.1_2123536_2124820_-	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form	NA|91aa|down_6|CP026112.1_2124816_2125089_-	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain	NA|376aa|down_7|CP026112.1_2125081_2126209_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|322aa|down_8|CP026112.1_2126205_2127171_-	PRK13970, PRK13970, 4-hydroxyproline epimerase	NA|302aa|down_9|CP026112.1_2127519_2128425_+	cd00408, DHDPS-like, Dihydrodipicolinate synthase family
GCA_002902925.1_ASM290292v1	CP026113	Paraburkholderia terrae strain DSM 17804 chromosome 3, complete sequence	1	358707-358787	1	CRISPRCasFinder	no		csa3,WYL	Orphan	TTTGCCCTTGCGCTGGCATCCGCG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,PD-DExK	NA|346aa|up_7|CP026113.1_349152_350190_-,NA|83aa|down_7|CP026113.1_369900_370149_-	NA|471aa|up_9|CP026113.1_346896_348309_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|210aa|up_8|CP026113.1_348404_349034_+	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|346aa|up_7|CP026113.1_349152_350190_-	NA	NA|282aa|up_6|CP026113.1_350725_351571_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|43aa|up_5|CP026113.1_351584_351713_+	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	NA|317aa|up_4|CP026113.1_351705_352656_-	cd08435, PBP2_GbpR, The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold	NA|578aa|up_3|CP026113.1_352822_354556_+	PRK06131, PRK06131, dihydroxy-acid dehydratase; Validated	NA|530aa|up_2|CP026113.1_354567_356157_+	cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde Dehydrogenase	NA|450aa|up_1|CP026113.1_356352_357702_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|310aa|up_0|CP026113.1_357746_358676_+	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|394aa|down_0|CP026113.1_359631_360813_-	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF	NA|866aa|down_1|CP026113.1_360849_363447_-	TIGR02333, 2-methyl_citrate_dehydratase_Fe-S_dependent_AcnD, 2-methylisocitrate dehydratase, Fe/S-dependent	NA|390aa|down_2|CP026113.1_363704_364874_-	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|298aa|down_3|CP026113.1_364894_365788_-	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|650aa|down_4|CP026113.1_365986_367936_+	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|193aa|down_5|CP026113.1_367945_368524_-	pfam14235, DUF4337, Domain of unknown function (DUF4337)	NA|354aa|down_6|CP026113.1_368643_369705_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|83aa|down_7|CP026113.1_369900_370149_-	NA	NA|378aa|down_8|CP026113.1_370212_371346_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|795aa|down_9|CP026113.1_371597_373982_-	smart00458, RICIN, Ricin-type beta-trefoil
GCA_002902925.1_ASM290292v1	CP026113	Paraburkholderia terrae strain DSM 17804 chromosome 3, complete sequence	2	793638-793728	2	CRISPRCasFinder	no		csa3,WYL	Orphan	CGCAAAGGCCAAAACACCAAACGGCGACGC	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,PD-DExK	NA|68aa|up_8|CP026113.1_783494_783698_+,NA|99aa|down_0|CP026113.1_793893_794190_-,NA|84aa|down_7|CP026113.1_800428_800680_+,NA|62aa|down_9|CP026113.1_800990_801176_-	NA|304aa|up_9|CP026113.1_782473_783385_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|68aa|up_8|CP026113.1_783494_783698_+	NA	NA|280aa|up_7|CP026113.1_783705_784545_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|252aa|up_6|CP026113.1_784666_785422_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|289aa|up_5|CP026113.1_785418_786285_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|up_4|CP026113.1_786338_787370_-	cd13556, PBP2_SsuA_like_1, Substrate binding domain of putative sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily	NA|395aa|up_3|CP026113.1_787634_788819_+	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C	NA|417aa|up_2|CP026113.1_788991_790242_+	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family	NA|413aa|up_1|CP026113.1_790245_791484_+	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family	NA|454aa|up_0|CP026113.1_791483_792845_+	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family	NA|99aa|down_0|CP026113.1_793893_794190_-	NA	NA|111aa|down_1|CP026113.1_794315_794648_-	COG1146, COG1146, Ferredoxin [Energy production and conversion]	NA|519aa|down_2|CP026113.1_794662_796219_-	COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]	NA|288aa|down_3|CP026113.1_796215_797079_-	PRK10160, PRK10160, taurine ABC transporter permease TauC	NA|260aa|down_4|CP026113.1_797075_797855_-	PRK11248, tauB, taurine ABC transporter ATP-binding subunit	NA|336aa|down_5|CP026113.1_797864_798872_-	COG4521, TauA, ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|136aa|down_6|CP026113.1_798923_799331_-	COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]	NA|84aa|down_7|CP026113.1_800428_800680_+	NA	NA|89aa|down_8|CP026113.1_800723_800990_-	pfam07369, DUF1488, Protein of unknown function (DUF1488)	NA|62aa|down_9|CP026113.1_800990_801176_-	NA
GCA_002902925.1_ASM290292v1	CP026113	Paraburkholderia terrae strain DSM 17804 chromosome 3, complete sequence	4	1930513-1930633	4	CRISPRCasFinder	no		csa3,WYL	Orphan	GCTTCACGCGTCGCCCCTGTGCGGGGCGGCA	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,PD-DExK	NA|143aa|up_4|CP026113.1_1925001_1925430_+,NA	NA|437aa|up_9|CP026113.1_1917725_1919036_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|60aa|up_8|CP026113.1_1919074_1919254_-	pfam05532, CsbD, CsbD-like	NA|1065aa|up_7|CP026113.1_1919402_1922597_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|288aa|up_6|CP026113.1_1923083_1923947_+	pfam18014, Acetyltransf_18, Acetyltransferase (GNAT) domain	NA|289aa|up_5|CP026113.1_1923951_1924818_-	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated	NA|143aa|up_4|CP026113.1_1925001_1925430_+	NA	NA|259aa|up_3|CP026113.1_1925564_1926341_-	PRK09990, PRK09990, DNA-binding transcriptional regulator GlcC; Provisional	NA|500aa|up_2|CP026113.1_1926564_1928064_+	PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional	NA|356aa|up_1|CP026113.1_1928063_1929131_+	PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional	NA|411aa|up_0|CP026113.1_1929144_1930377_+	PRK11274, glcF, glycolate oxidase subunit GlcF	NA|450aa|down_0|CP026113.1_1931417_1932767_-	cd17808, HipA_Ec_like, type II toxin-antitoxin sytem toxin HipA from Escherichia coli and similar proteins	NA|83aa|down_1|CP026113.1_1932769_1933018_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|316aa|down_2|CP026113.1_1933230_1934178_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|911aa|down_3|CP026113.1_1934427_1937160_+	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|428aa|down_4|CP026113.1_1937179_1938463_-	pfam04286, DUF445, Protein of unknown function (DUF445)	NA|278aa|down_5|CP026113.1_1938459_1939293_-	TIGR02240, Poly3-hydroxyalkanoate_depolymerase, poly(3-hydroxyalkanoate) depolymerase	NA|142aa|down_6|CP026113.1_1939368_1939794_-	TIGR01841, hypothetical_protein, phasin family protein	NA|577aa|down_7|CP026113.1_1939837_1941568_-	TIGR01839, Poly3-hydroxyalkanoate_polymerase_1, poly(R)-hydroxyalkanoic acid synthase, class II	NA|155aa|down_8|CP026113.1_1941601_1942066_-	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|548aa|down_9|CP026113.1_1942093_1943737_-	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated
GCA_002902925.1_ASM290292v1	CP026114	Paraburkholderia terrae strain DSM 17804 chromosome 4, complete sequence	1	755729-755823	1	CRISPRCasFinder	no		PD-DExK	Orphan	TGCACAAACAACCTCACCTTCCT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,PD-DExK	NA|65aa|up_5|CP026114.1_749954_750149_-,NA|81aa|up_3|CP026114.1_750744_750987_+,NA	NA|260aa|up_9|CP026114.1_742616_743396_-	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins	NA|355aa|up_8|CP026114.1_743651_744716_-	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|222aa|up_7|CP026114.1_744887_745553_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|763aa|up_6|CP026114.1_745937_748226_-	cd01948, EAL, EAL domain	NA|65aa|up_5|CP026114.1_749954_750149_-	NA	NA|193aa|up_4|CP026114.1_750138_750717_+	pfam12482, DUF3701, Phage integrase protein	NA|81aa|up_3|CP026114.1_750744_750987_+	NA	NA|120aa|up_2|CP026114.1_751343_751703_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|326aa|up_1|CP026114.1_753176_754154_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|348aa|up_0|CP026114.1_754150_755194_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
GCA_002902925.1_ASM290292v1	CP026114	Paraburkholderia terrae strain DSM 17804 chromosome 4, complete sequence	2	755887-755947	2	CRISPRCasFinder	no		PD-DExK	Orphan	TGCACAAACAACCTCACCTTCCT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,PD-DExK	NA|65aa|up_5|CP026114.1_749954_750149_-,NA|81aa|up_3|CP026114.1_750744_750987_+,NA	NA|260aa|up_9|CP026114.1_742616_743396_-	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins	NA|355aa|up_8|CP026114.1_743651_744716_-	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|222aa|up_7|CP026114.1_744887_745553_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|763aa|up_6|CP026114.1_745937_748226_-	cd01948, EAL, EAL domain	NA|65aa|up_5|CP026114.1_749954_750149_-	NA	NA|193aa|up_4|CP026114.1_750138_750717_+	pfam12482, DUF3701, Phage integrase protein	NA|81aa|up_3|CP026114.1_750744_750987_+	NA	NA|120aa|up_2|CP026114.1_751343_751703_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|326aa|up_1|CP026114.1_753176_754154_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|348aa|up_0|CP026114.1_754150_755194_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
