assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002925525.1_YDC107	CP025707	Escherichia coli strain YDC107 chromosome, complete genome	1	1356025-1356599	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	TTTATCCCCGCTGGCGCGGGGAACAC,CGATTTATCCCCGCTGGCGCGGGGAACAC,CGATTTATCCCCGCTGGCGCGGGGAACAC	26,29,29	0	0	NA	NA	I-E:I-E:I-E	9,8,8	9	TypeI-E	DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|254aa|up_9|CP025707.1_1347895_1348657_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|CP025707.1_1348637_1349687_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|CP025707.1_1349683_1350163_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP025707.1_1350162_1350873_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP025707.1_1350891_1351203_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|CP025707.1_1351396_1351720_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP025707.1_1351769_1352375_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|CP025707.1_1352374_1353802_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP025707.1_1353803_1354712_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|CP025707.1_1354963_1356001_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|CP025707.1_1356695_1356989_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|CP025707.1_1356985_1357909_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|CP025707.1_1357905_1358556_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|CP025707.1_1358537_1359284_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|CP025707.1_1359294_1360350_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|CP025707.1_1360364_1360901_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|CP025707.1_1360897_1362460_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|531aa|down_7|CP025707.1_1362557_1364150_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas3|383aa|down_8|CP025707.1_1364109_1365258_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_9|CP025707.1_1365452_1365605_-	pfam01848, HOK_GEF, Hok/gef family
GCA_002925525.1_YDC107	CP025707	Escherichia coli strain YDC107 chromosome, complete genome	2	1383738-1384376	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CTCGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,31	0	0	NA	NA	I-E:I-E:I-E	10,10,4	10	Unclear	DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|58aa|up_8|CP025707.1_1373544_1373718_+,NA|36aa|down_1|CP025707.1_1385558_1385666_+	NA|192aa|up_9|CP025707.1_1372486_1373062_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|58aa|up_8|CP025707.1_1373544_1373718_+	NA	NA|201aa|up_7|CP025707.1_1373942_1374545_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|287aa|up_6|CP025707.1_1374644_1375505_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|CP025707.1_1375501_1376281_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|CP025707.1_1376258_1377596_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|CP025707.1_1377689_1379144_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|CP025707.1_1379213_1379999_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|CP025707.1_1380317_1381595_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|CP025707.1_1381621_1383100_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|CP025707.1_1384714_1385386_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|36aa|down_1|CP025707.1_1385558_1385666_+	NA	NA|291aa|down_2|CP025707.1_1385679_1386552_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|CP025707.1_1386611_1387910_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|CP025707.1_1387996_1389634_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|CP025707.1_1389861_1390653_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|CP025707.1_1390724_1391060_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|CP025707.1_1391059_1391308_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|CP025707.1_1391385_1393620_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|CP025707.1_1393667_1394969_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCA_002925525.1_YDC107	CP025707	Escherichia coli strain YDC107 chromosome, complete genome	3	3126104-3126253	3	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|532aa|up_6|CP025707.1_3117410_3119006_+,NA	NA|238aa|up_9|CP025707.1_3115313_3116027_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|CP025707.1_3116097_3116691_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|CP025707.1_3116835_3117288_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|532aa|up_6|CP025707.1_3117410_3119006_+	NA	NA|335aa|up_5|CP025707.1_3119061_3120066_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|CP025707.1_3120227_3120644_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|CP025707.1_3120689_3121193_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|CP025707.1_3121385_3122582_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|CP025707.1_3122637_3125493_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|CP025707.1_3125492_3125936_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|CP025707.1_3126289_3127801_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|336aa|down_1|CP025707.1_3128160_3129168_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|CP025707.1_3129167_3130250_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|CP025707.1_3130410_3131913_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|CP025707.1_3131990_3132989_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|CP025707.1_3133055_3134375_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|CP025707.1_3134437_3135202_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|CP025707.1_3135225_3136257_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|CP025707.1_3136473_3137037_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|CP025707.1_3137040_3138060_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
