The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026231	Citrobacter freundii complex sp. CFNIH4 chromosome, complete genome	5079781	341027	429221	5079781	protease,integrase,tail,holin,head,plate,transposase,lysis	Salmonella_phage(38.03%)	107	337867:337926	429304:430072
337867:337926	attL	CGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT	NA	NA	NA	NA
AUZ68196.1|341027_342191_-|integrase	site-specific integrase	integrase	G8C7S0	Escherichia_phage	67.2	2.1e-153
AUZ72477.1|342457_342697_-	DUF4060 domain-containing protein	NA	S4TR31	Salmonella_phage	88.6	1.9e-32
AUZ68197.1|342699_345270_-	DNA (cytosine-5-)-methyltransferase	NA	A0A1B0V7P0	Salmonella_phage	47.9	4.5e-220
AUZ68198.1|345266_345425_-	cruciferin	NA	A0A1U8QQC1	Enterobacteria_phage	56.9	3.3e-09
AUZ68199.1|345421_346153_-	hypothetical protein	NA	A0A088C400	Shewanella_sp._phage	39.3	3.1e-25
AUZ68200.1|346169_346841_-	ATP-binding protein	NA	G9L667	Escherichia_phage	46.6	8.8e-51
AUZ68201.1|346837_347524_-	exodeoxyribonuclease X	NA	A0A1W5PTR6	Pseudoalteromonas_phage	36.6	3.6e-15
AUZ68202.1|347516_347957_-	HNH endonuclease	NA	Q6WYF0	Enterobacteria_phage	46.7	1.3e-26
AUZ68203.1|348158_348974_-	hypothetical protein	NA	A0A077KGZ0	Edwardsiella_phage	82.4	7.0e-26
AUZ68204.1|349056_349329_-	hypothetical protein	NA	S4TU79	Salmonella_phage	62.2	1.6e-27
AUZ68205.1|349537_349738_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ68206.1|350000_350693_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PIE7	Escherichia_phage	55.4	1.6e-60
AUZ68207.1|350821_351055_+	transcriptional regulator	NA	A0A2H4FNF3	Salmonella_phage	51.4	6.4e-17
AUZ68208.1|351096_351417_+	hypothetical protein	NA	H6WRX6	Salmonella_phage	94.3	1.6e-47
AUZ68209.1|351903_352794_+	DNA replication protein	NA	A0A1R3Y5R9	Salmonella_virus	50.5	3.1e-67
AUZ68210.1|352790_354188_+	helicase DnaB	NA	Q9MCT4	Escherichia_phage	63.8	7.4e-169
AUZ68211.1|354187_354478_+	nucleoside 2-deoxyribosyltransferase	NA	A0A0U2SAZ1	Escherichia_phage	64.5	3.1e-29
AUZ68212.1|354950_355433_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ68213.1|355432_356044_+	DUF550 domain-containing protein	NA	K7PGV7	Enterobacterial_phage	82.2	4.0e-50
AUZ68214.1|356043_356328_+	DUF4752 domain-containing protein	NA	A0A2H5BFM0	Salmonella_phage	71.3	6.4e-35
AUZ68215.1|356320_356659_+	hypothetical protein	NA	A0A193GYX4	Enterobacter_phage	85.7	1.7e-50
AUZ68216.1|356899_357352_+	recombination protein NinB	NA	Q8VNP6	Enterobacteria_phage	53.1	5.7e-38
AUZ68217.1|357341_357641_+	hypothetical protein	NA	K7P7Q1	Enterobacteria_phage	88.0	5.1e-43
AUZ68218.1|357637_358120_+	AsnC family protein	NA	A0A068CBG2	Acinetobacter_phage	51.5	5.2e-37
AUZ68219.1|358110_358473_+	RusA family crossover junction endodeoxyribonuclease	NA	K7P6W0	Enterobacteria_phage	63.2	3.0e-37
AUZ68220.1|358469_359153_+	hypothetical protein	NA	Q8HA89	Salmonella_phage	43.6	1.4e-40
AUZ68221.1|359528_359852_+|holin	phage holin, lambda family	holin	G5DA93	Enterobacteria_phage	82.5	6.8e-41
AUZ68222.1|359835_360285_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	80.5	3.2e-65
AUZ68223.1|360510_360696_+|lysis	lysis protein	lysis	M9NZE8	Enterobacteria_phage	100.0	7.8e-26
AUZ68224.1|360947_361466_+	Rha family transcriptional regulator	NA	Q38450	Enterobacteria_phage	100.0	2.9e-94
AUZ68225.1|361526_362147_+	hypothetical protein	NA	I6S676	Salmonella_phage	73.2	3.4e-89
AUZ68226.1|362178_362652_+	DUF2280 domain-containing protein	NA	H9C190	Pectobacterium_phage	72.8	2.8e-51
AUZ68227.1|362654_364277_+	TerL protein	NA	A0A0M5M1R6	Salmonella_phage	95.7	1.5e-311
AUZ68228.1|364276_365746_+	hypothetical protein	NA	A0A0M4S6U1	Salmonella_phage	94.5	9.6e-268
AUZ72478.1|365663_366368_+|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	95.5	2.8e-108
AUZ68229.1|366382_367567_+	hypothetical protein	NA	A0A0M4R5A6	Salmonella_phage	92.2	2.9e-206
AUZ68230.1|367571_368075_+	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	83.8	4.2e-74
AUZ68231.1|368086_369028_+	hypothetical protein	NA	A0A0M3ULD3	Salmonella_phage	96.5	8.0e-175
AUZ68232.1|369069_369459_+	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	60.5	1.2e-31
AUZ68233.1|369424_369832_+	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	95.6	3.9e-70
AUZ68234.1|369828_370383_+	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	92.9	1.0e-89
AUZ68235.1|370369_370759_+|head,tail	head-tail adaptor	head,tail	A0A0M3ULK0	Salmonella_phage	97.7	7.8e-68
AUZ68236.1|370733_371297_+	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	76.3	3.4e-80
AUZ68237.1|371300_372461_+	hypothetical protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.6	1.3e-158
AUZ68238.1|372471_372912_+	DUF3277 domain-containing protein	NA	A0A0M5M1K6	Salmonella_phage	77.4	7.5e-59
AUZ68239.1|372915_373341_+	hypothetical protein	NA	A0A2H4J2V6	uncultured_Caudovirales_phage	57.5	1.6e-37
AUZ72479.1|373400_373529_+	lytic transglycosylase	NA	NA	NA	NA	NA
AUZ68240.1|373518_375522_+	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	55.4	9.6e-194
AUZ68241.1|375521_376124_+	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	69.0	4.8e-64
AUZ68242.1|376125_376431_+	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	53.5	9.2e-24
AUZ68243.1|376433_377495_+	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	67.8	5.5e-140
AUZ72480.1|377502_377841_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	50.0	6.6e-23
AUZ68244.1|377845_378163_-	Arc family DNA-binding protein	NA	A0A0P0ZBD1	Stx2-converting_phage	39.8	6.3e-07
AUZ68245.1|378280_378442_+	Arc family DNA-binding protein	NA	NA	NA	NA	NA
AUZ68246.1|378485_379133_+	hypothetical protein	NA	H6WRU8	Salmonella_phage	41.6	3.2e-34
AUZ68247.1|379200_379905_+	transcriptional regulator	NA	A0A0H5AUF7	Pseudomonas_phage	41.6	5.8e-37
AUZ68248.1|379962_380703_+|plate	phage baseplate assembly protein V	plate	A0A0M5M1K7	Salmonella_phage	62.0	2.6e-72
AUZ68249.1|380702_381056_+	hypothetical protein	NA	A0A2H4J629	uncultured_Caudovirales_phage	76.1	1.1e-44
AUZ68250.1|381056_382256_+	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	82.0	4.4e-178
AUZ68251.1|382252_382933_+	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	81.4	1.4e-109
AUZ72481.1|384346_384838_+|tail	phage tail protein	tail	U5P083	Shigella_phage	34.8	4.5e-12
AUZ68252.1|385200_386385_+|integrase	integrase	integrase	Q7M297	Enterobacteria_phage	61.2	1.8e-144
AUZ68253.1|386377_388006_+	RNA-dependent DNA polymerase	NA	NA	NA	NA	NA
AUZ68254.1|388002_388743_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ68255.1|388905_389091_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ68256.1|389054_389621_-	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	62.7	4.5e-56
AUZ68257.1|389637_389883_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	76.5	6.3e-31
AUZ68258.1|389879_390617_-	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	64.9	1.5e-80
AUZ68259.1|390987_391206_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ68260.1|391420_391972_+	Ash-like/host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	71.3	7.2e-35
AUZ68261.1|391968_392196_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ68262.1|392192_392513_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ68263.1|392527_394861_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	83.9	0.0e+00
AUZ68264.1|395552_395894_-	toxin	NA	NA	NA	NA	NA
AUZ68265.1|395914_396232_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA	NA
AUZ68266.1|396249_396471_-	DUF987 domain-containing protein	NA	NA	NA	NA	NA
AUZ68267.1|396479_396956_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ68268.1|396971_397433_-	antirestriction protein	NA	A0A1S5R3R9	Pseudomonas_phage	32.3	3.7e-08
AUZ68269.1|398098_398416_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ68270.1|398378_399526_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	93.0	1.3e-147
AUZ68271.1|400648_401800_-	PDZ domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	30.3	9.9e-26
AUZ68272.1|401824_402790_-|protease	Zn-dependent protease	protease	NA	NA	NA	NA
AUZ68273.1|402767_403265_-	phosphate-starvation-inducible E family protein	NA	NA	NA	NA	NA
AUZ68274.1|403261_404977_-	sodium:proton exchanger	NA	NA	NA	NA	NA
AUZ68275.1|404980_405421_-	thioredoxin TrxC	NA	A0A1J0GW78	Streptomyces_phage	37.2	5.8e-11
AUZ68276.1|405410_406556_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ68277.1|406635_407247_-	HdeD family acid-resistance protein	NA	NA	NA	NA	NA
AUZ68278.1|407336_408224_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ68279.1|408326_409241_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ68280.1|409263_409722_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
AUZ68281.1|409809_411615_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	C7U047	Ostreococcus_tauri_virus	39.8	3.9e-93
AUZ68282.1|411675_411867_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ68283.1|411866_414716_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	41.2	6.9e-129
AUZ68284.1|414821_415391_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
AUZ68285.1|415555_416959_+|transposase	ISNCY family transposase ISKpn21	transposase	NA	NA	NA	NA
AUZ72482.1|416987_417620_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ68286.1|418220_418484_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ68287.1|418483_418738_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ68288.1|419898_420903_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AUZ68289.1|420932_422333_-	glycosyl hydrolase family 32	NA	F8WPR5	Bacillus_phage	26.1	2.0e-20
AUZ68290.1|422332_423703_-	PTS sucrose transporter subunit IIBC	NA	NA	NA	NA	NA
AUZ68291.1|423840_425358_-	porin	NA	NA	NA	NA	NA
AUZ68292.1|425523_426447_-	aminoimidazole riboside kinase	NA	NA	NA	NA	NA
AUZ68293.1|426675_426846_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AUZ68294.1|426845_427028_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ68295.1|427355_427664_+	maltose acetyltransferase	NA	NA	NA	NA	NA
AUZ68296.1|428240_429221_-|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	98.5	9.8e-184
429304:430072	attR	CGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGGCCAACGCCCATAATGCGGGCGGTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC	NA	NA	NA	NA
>prophage 2
CP026231	Citrobacter freundii complex sp. CFNIH4 chromosome, complete genome	5079781	1299035	1374761	5079781	portal,integrase,tail,holin,head,transposase,terminase,tRNA,capsid	Enterobacteria_phage(28.57%)	91	1294922:1294937	1318617:1318632
1294922:1294937	attL	CTTCCTGCCATCGGAA	NA	NA	NA	NA
AUZ69051.1|1299035_1300154_-|integrase	integrase	integrase	O21940	Phage_21	43.0	3.4e-79
AUZ72519.1|1300128_1300392_-	excisionase	NA	NA	NA	NA	NA
AUZ72520.1|1300682_1302449_-	hypothetical protein	NA	A0A0U2I1R6	Escherichia_phage	26.6	2.1e-11
AUZ69052.1|1302781_1302967_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69053.1|1302959_1303154_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69054.1|1303780_1304281_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69055.1|1304654_1305065_-	transcriptional regulator	NA	I6PD69	Cronobacter_phage	47.7	4.1e-27
AUZ69056.1|1305145_1305385_+	transcriptional regulator	NA	NA	NA	NA	NA
AUZ69057.1|1305384_1305861_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69058.1|1305873_1306116_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69059.1|1306112_1307147_+	DNA-binding protein	NA	G9L6A8	Escherichia_phage	41.7	7.5e-17
AUZ69060.1|1307130_1307586_+	replication protein	NA	A0A0U2JGJ0	Escherichia_phage	52.0	6.2e-40
AUZ69061.1|1307599_1308262_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69062.1|1308258_1308483_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69063.1|1308817_1309030_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69064.1|1309026_1309395_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69065.1|1311369_1311615_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69066.1|1311887_1312124_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69067.1|1312216_1312474_+	DNA polymerase III subunit theta	NA	A0A077SLL5	Escherichia_phage	81.3	7.0e-25
AUZ69068.1|1312473_1312692_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69069.1|1312784_1313021_+	DNA damage-inducible protein I	NA	K7PM44	Enterobacteria_phage	96.1	2.8e-36
AUZ69070.1|1313142_1313325_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69071.1|1313470_1313779_+	hypothetical protein	NA	Q6V7S4	Burkholderia_virus	58.7	1.3e-25
AUZ69072.1|1313771_1314131_+	RusA family crossover junction endodeoxyribonuclease	NA	K7P6W0	Enterobacteria_phage	61.0	9.8e-41
AUZ69073.1|1314127_1314727_+	hypothetical protein	NA	H9C175	Pectobacterium_phage	74.9	7.0e-84
AUZ72521.1|1315120_1315399_+|holin	holin	holin	K7PGZ9	Enterobacteria_phage	95.7	4.3e-44
AUZ69074.1|1315370_1315919_+	lysozyme	NA	K7PM52	Enterobacteria_phage	95.1	2.9e-100
AUZ69075.1|1315915_1316422_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	59.1	3.2e-05
AUZ69076.1|1317553_1317787_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69077.1|1317917_1318103_+	Eag protein	NA	K7PL40	Enterobacteria_phage	50.0	9.0e-06
AUZ69078.1|1318161_1318503_+	HNH endonuclease	NA	A0A2I6PIG1	Escherichia_phage	74.8	3.9e-47
AUZ69079.1|1318621_1319086_+|terminase	phage terminase small subunit P27 family	terminase	Q9B019	Phage_GMSE-1	61.4	1.4e-47
1318617:1318632	attR	TTCCGATGGCAGGAAG	NA	NA	NA	NA
AUZ69080.1|1319039_1320782_+|terminase	phage terminase small subunit P27 family	terminase	M4QNU0	Tetraselmis_viridis_virus	42.7	1.8e-135
AUZ69081.1|1320781_1322089_+|portal	phage portal protein	portal	K7PJU5	Enterobacteria_phage	84.6	4.6e-213
AUZ69082.1|1322101_1322956_+	peptidase S14	NA	K7PH05	Enterobacteria_phage	79.6	3.8e-123
AUZ69083.1|1322966_1324184_+|capsid	phage major capsid protein	capsid	K7PM57	Enterobacteria_phage	82.2	9.3e-184
AUZ69084.1|1324226_1324451_+	hypothetical protein	NA	A0A1P8DTJ1	Proteus_phage	68.1	2.8e-09
AUZ69085.1|1324450_1324777_+	hypothetical protein	NA	K7PKT4	Enterobacteria_phage	92.6	5.9e-53
AUZ69086.1|1324840_1325053_+	hypothetical protein	NA	Q9MCV3	Escherichia_phage	58.0	3.4e-09
AUZ69087.1|1325054_1325387_+|head,tail	head-tail adaptor protein	head,tail	K7PH08	Enterobacteria_phage	90.0	7.9e-53
AUZ69088.1|1325379_1325919_+	hypothetical protein	NA	K7PM60	Enterobacteria_phage	87.7	1.3e-81
AUZ69089.1|1325915_1326281_+	DUF3168 domain-containing protein	NA	A0A286S1R1	Klebsiella_phage	70.2	1.3e-48
AUZ69090.1|1326340_1326832_+|tail	phage tail protein	tail	A0A286S1Q8	Klebsiella_phage	70.6	3.6e-62
AUZ69091.1|1326884_1327265_+|tail	phage tail protein	tail	K7PJU9	Enterobacteria_phage	76.6	1.0e-43
AUZ69092.1|1327249_1327552_+|tail	phage tail protein	tail	Q9MCU7	Escherichia_phage	62.2	2.1e-28
AUZ69093.1|1327623_1328001_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69094.1|1328059_1330534_+|tail	phage tail tape measure protein	tail	K7PM62	Enterobacteria_phage	63.3	5.6e-252
AUZ69095.1|1330575_1330935_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69096.1|1331010_1331604_+	hypothetical protein	NA	S4TSP7	Salmonella_phage	95.9	1.5e-107
AUZ69097.1|1331603_1332188_+	hypothetical protein	NA	S4TND4	Salmonella_phage	96.9	1.6e-104
AUZ69098.1|1332194_1332593_+	hypothetical protein	NA	S4TR39	Salmonella_phage	93.9	1.9e-69
AUZ69099.1|1332592_1335313_+|tail	phage tail protein	tail	S4TTF5	Salmonella_phage	90.2	0.0e+00
AUZ69100.1|1335312_1336257_+	hypothetical protein	NA	H6WRW5	Salmonella_phage	66.5	1.4e-118
AUZ69101.1|1336266_1337340_+	hypothetical protein	NA	Q5G8V6	Enterobacteria_phage	51.8	1.4e-87
AUZ69102.1|1337407_1337650_-	DNA-damage-inducible protein I	NA	Q6UAW0	Klebsiella_phage	75.3	7.6e-29
AUZ72522.1|1337853_1338486_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69103.1|1338514_1339918_-|transposase	ISNCY family transposase ISKpn21	transposase	NA	NA	NA	NA
AUZ69104.1|1340566_1341430_-	spermidine/putrescine ABC transporter permease PotB	NA	Q6GZ02	Mycoplasma_phage	25.8	4.4e-10
AUZ69105.1|1341413_1342550_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	Q6GZ03	Mycoplasma_phage	40.3	7.2e-29
AUZ69106.1|1342800_1344027_+	peptidase T	NA	NA	NA	NA	NA
AUZ69107.1|1344129_1345251_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AUZ69108.1|1345343_1346807_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA	NA
AUZ72523.1|1346806_1347478_-	two-component system response regulator PhoP	NA	NA	NA	NA	NA
AUZ69109.1|1347642_1349013_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	45.3	8.5e-109
AUZ72524.1|1349016_1349658_-	lysogenization regulator HflD	NA	NA	NA	NA	NA
AUZ72525.1|1349692_1350799_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
AUZ69110.1|1350852_1351314_-	NUDIX hydrolase	NA	NA	NA	NA	NA
AUZ69111.1|1351323_1352256_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69112.1|1352290_1352908_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
AUZ69113.1|1353110_1354361_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	94.4	9.4e-22
AUZ69114.1|1354496_1355006_-	DedA family protein	NA	NA	NA	NA	NA
AUZ69115.1|1355180_1355423_-	DinI family protein	NA	Q6UAW0	Klebsiella_phage	77.9	1.5e-29
AUZ69116.1|1355810_1356509_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	67.7	3.8e-89
AUZ72526.1|1356594_1356915_+	transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	44.8	3.2e-19
AUZ69117.1|1356959_1358249_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4J144	uncultured_Caudovirales_phage	70.0	1.2e-165
AUZ69118.1|1358261_1358687_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	71.4	9.5e-51
AUZ72527.1|1359575_1360061_+	hypothetical protein	NA	A0A1B0VBR9	Salmonella_phage	34.9	2.3e-08
AUZ69119.1|1360071_1360326_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69120.1|1360591_1360864_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69121.1|1361103_1362627_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69122.1|1362796_1362994_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69123.1|1363299_1364268_-|transposase	IS5-like element IS903B family transposase	transposase	A0A1B0VFY5	Salmonella_phage	99.7	2.1e-186
AUZ69124.1|1366658_1368281_+	nickel ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUZ72528.1|1368280_1369255_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUZ69125.1|1369244_1370057_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUZ69126.1|1370050_1370845_+	peptide ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.7	2.9e-08
AUZ69127.1|1370828_1371419_+	peptide ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUZ69128.1|1371508_1372159_+	metal-binding protein ZinT	NA	NA	NA	NA	NA
AUZ69129.1|1373111_1373474_+	DUF1971 domain-containing protein	NA	NA	NA	NA	NA
AUZ69130.1|1373477_1373660_+	DUF1869 domain-containing protein	NA	NA	NA	NA	NA
AUZ69131.1|1373756_1374761_+|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP026231	Citrobacter freundii complex sp. CFNIH4 chromosome, complete genome	5079781	1456939	1466977	5079781	tRNA	Brazilian_cedratvirus(28.57%)	10	NA	NA
AUZ69212.1|1456939_1457923_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	1.4e-33
AUZ69213.1|1457938_1460326_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AUZ69214.1|1460330_1460630_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	7.2e-13
AUZ69215.1|1460783_1461764_+	vitamin B12 ABC transporter permease BtuC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	24.8	6.7e-15
AUZ69216.1|1461824_1462376_+	glutathione peroxidase	NA	NA	NA	NA	NA
AUZ69217.1|1462375_1463125_+	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	A0A2R8FG22	Brazilian_cedratvirus	30.3	9.3e-09
AUZ69218.1|1463202_1463667_+	endopeptidase	NA	A0A1V0DZX6	Clostridioides_phage	38.2	3.5e-14
AUZ69219.1|1463983_1464697_+	EAL domain-containing protein	NA	NA	NA	NA	NA
AUZ69220.1|1464758_1466201_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	35.3	7.7e-52
AUZ69221.1|1466197_1466977_-	heme ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	26.8	5.1e-10
>prophage 4
CP026231	Citrobacter freundii complex sp. CFNIH4 chromosome, complete genome	5079781	1695391	1721283	5079781	integrase,transposase	Stx2-converting_phage(33.33%)	20	1698681:1698696	1716839:1716854
AUZ69426.1|1695391_1696795_-|transposase	ISNCY family transposase ISKpn21	transposase	NA	NA	NA	NA
AUZ72549.1|1697013_1697646_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69427.1|1697674_1699078_-|transposase	ISNCY family transposase ISKpn21	transposase	NA	NA	NA	NA
1698681:1698696	attL	ATCCTTGCGGCACGTT	NA	NA	NA	NA
AUZ69428.1|1699342_1700866_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
AUZ69429.1|1700828_1702499_+|integrase	integrase	integrase	NA	NA	NA	NA
AUZ69430.1|1702495_1705033_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69431.1|1705025_1705529_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69432.1|1705702_1706035_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AUZ69433.1|1706131_1706692_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69434.1|1707000_1707756_-	M48 family peptidase	NA	NA	NA	NA	NA
AUZ69435.1|1707752_1711037_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	27.0	8.1e-65
AUZ69436.1|1711089_1711773_-	YecA family protein	NA	NA	NA	NA	NA
AUZ69437.1|1711769_1712954_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AUZ69438.1|1712943_1714467_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	38.7	8.3e-89
AUZ69439.1|1715019_1716186_-	L-threonine dehydrogenase	NA	NA	NA	NA	NA
AUZ69440.1|1716608_1717550_-	pyridoxal-5'-phosphate-dependent protein subunit beta	NA	NA	NA	NA	NA
1716839:1716854	attR	AACGTGCCGCAAGGAT	NA	NA	NA	NA
AUZ69441.1|1717914_1718940_+|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	99.1	1.3e-183
AUZ69442.1|1718970_1719354_+	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	50.0	3.0e-11
AUZ69443.1|1719350_1719698_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	95.7	2.7e-59
AUZ69444.1|1719747_1721283_+|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	87.5	3.5e-260
>prophage 5
CP026231	Citrobacter freundii complex sp. CFNIH4 chromosome, complete genome	5079781	1727208	1747982	5079781	transposase	Escherichia_phage(50.0%)	20	NA	NA
AUZ69452.1|1727208_1728213_-|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
AUZ69453.1|1728291_1729512_-	DUF4158 domain-containing protein	NA	A0A1B0V7H9	Salmonella_phage	56.4	3.7e-116
AUZ69454.1|1729514_1730072_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	81.3	3.4e-48
AUZ69455.1|1730201_1731689_-	RND transporter	NA	NA	NA	NA	NA
AUZ69456.1|1731675_1732149_-	cytochrome C	NA	NA	NA	NA	NA
AUZ69457.1|1732177_1732888_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.3	3.7e-31
AUZ69458.1|1732889_1734095_-	ABC transporter permease	NA	NA	NA	NA	NA
AUZ69459.1|1734091_1735243_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUZ69460.1|1735239_1735848_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AUZ69461.1|1736035_1737040_+|transposase	IS110-like element IS4321 family transposase	transposase	NA	NA	NA	NA
AUZ69462.1|1737529_1737865_+	protein secretion chaperonin CsaA	NA	NA	NA	NA	NA
AUZ69463.1|1740153_1740483_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2I6TCA4	Escherichia_phage	43.1	3.1e-17
AUZ69464.1|1740463_1740745_+	XRE family transcriptional regulator	NA	A0A2I6TC97	Escherichia_phage	38.0	1.3e-08
AUZ69465.1|1741022_1742003_+|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	98.5	9.8e-184
AUZ69466.1|1742041_1742167_-	ABC transporter	NA	NA	NA	NA	NA
AUZ69467.1|1742319_1742820_-	ferritin	NA	NA	NA	NA	NA
AUZ69468.1|1743146_1743851_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AUZ69469.1|1744987_1745464_+	DNA starvation/stationary phase protection protein	NA	A0A2H4N7L5	Lake_Baikal_phage	31.7	4.1e-18
AUZ69470.1|1745761_1746730_+|transposase	IS5-like element IS903B family transposase	transposase	A0A1B0VFY5	Salmonella_phage	99.7	2.1e-186
AUZ69471.1|1747001_1747982_+|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	98.5	9.8e-184
>prophage 6
CP026231	Citrobacter freundii complex sp. CFNIH4 chromosome, complete genome	5079781	2126757	2203513	5079781	protease,integrase,tail,holin,coat,head,transposase,terminase	Enterobacteria_phage(28.3%)	96	2155569:2155598	2201282:2201311
AUZ69801.1|2126757_2127762_+|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
AUZ69802.1|2128961_2130521_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	45.4	5.1e-41
AUZ69803.1|2130980_2131943_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
AUZ69804.1|2132001_2132802_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
AUZ69805.1|2132814_2133666_+	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
AUZ69806.1|2133726_2134185_+	DUF986 domain-containing protein	NA	NA	NA	NA	NA
AUZ69807.1|2134563_2135184_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69808.1|2135180_2135990_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA	NA
AUZ69809.1|2136053_2137799_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA	NA
AUZ69810.1|2138018_2138228_-	cold-shock protein CspC	NA	A0A1W6JNX5	Morganella_phage	78.1	1.6e-22
AUZ69811.1|2138240_2138384_-	DUF2627 domain-containing protein	NA	NA	NA	NA	NA
AUZ69812.1|2138345_2138609_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69813.1|2139020_2139305_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69814.1|2139379_2139523_-	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA	NA
AUZ69815.1|2139687_2139927_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69816.1|2140041_2140833_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA	NA
AUZ69817.1|2141007_2142375_+	MFS transporter	NA	NA	NA	NA	NA
AUZ69818.1|2142438_2142645_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69819.1|2142654_2143389_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69820.1|2144208_2145090_-|protease	protease HtpX	protease	NA	NA	NA	NA
AUZ69821.1|2145282_2147331_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.7	1.2e-87
AUZ69822.1|2147350_2148037_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
AUZ69823.1|2148133_2148631_-	Free methionine-R-sulfoxide reductase	NA	NA	NA	NA	NA
AUZ69824.1|2148759_2150043_+	paraquat-inducible protein A	NA	NA	NA	NA	NA
AUZ69825.1|2150011_2152645_+	MCE family protein	NA	NA	NA	NA	NA
AUZ69826.1|2152724_2154146_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
AUZ69827.1|2154243_2154483_+	DUF1480 domain-containing protein	NA	NA	NA	NA	NA
AUZ69828.1|2154585_2154777_+	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
AUZ69829.1|2154777_2155419_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	50.0	1.9e-55
2155569:2155598	attL	ACATAAAAAGAGACCGAATACGATTCCTGT	NA	NA	NA	NA
AUZ69830.1|2155763_2156081_-	hypothetical protein	NA	K7PGV5	Enterobacterial_phage	52.9	2.1e-23
AUZ69831.1|2156080_2156320_-	hypothetical protein	NA	K7P7N3	Enterobacteria_phage	69.2	7.0e-27
AUZ69832.1|2156625_2156928_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69833.1|2156924_2157419_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69834.1|2157569_2159861_-	hypothetical protein	NA	A0A1S5R3Z4	Pseudomonas_phage	46.0	4.5e-22
AUZ69835.1|2159902_2162986_-	kinase	NA	A0A286S259	Klebsiella_phage	53.4	6.8e-311
AUZ69836.1|2162982_2163363_-	nitrite transporter	NA	A0A286S2A6	Klebsiella_phage	74.6	1.7e-51
AUZ69837.1|2163372_2163861_-	DUF1833 domain-containing protein	NA	A0A286S2B1	Klebsiella_phage	62.8	1.7e-51
AUZ69838.1|2163857_2164328_-	hypothetical protein	NA	A0A286S298	Klebsiella_phage	57.4	3.9e-53
AUZ69839.1|2164327_2167042_-|tail	tail protein (tape measure)	tail	B1GS57	Salmonella_phage	42.5	2.3e-142
AUZ69840.1|2167110_2167575_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69841.1|2167713_2168070_-	hypothetical protein	NA	A0A0P0IE45	Acinetobacter_phage	46.9	2.0e-14
AUZ69842.1|2168069_2168444_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69843.1|2168491_2169160_-	hypothetical protein	NA	A0A1W6JNX2	Morganella_phage	49.6	2.1e-52
AUZ69844.1|2169220_2169976_-	hypothetical protein	NA	F1C5E5	Cronobacter_phage	83.8	7.0e-73
AUZ69845.1|2170041_2170425_-	hypothetical protein	NA	F1C5E4	Cronobacter_phage	63.8	8.9e-40
AUZ69846.1|2170421_2170862_-	hypothetical protein	NA	A0A1V0E5P5	Salmonella_phage	50.4	1.1e-30
AUZ69847.1|2170864_2171221_-	hypothetical protein	NA	G0ZNE2	Cronobacter_phage	62.4	4.0e-34
AUZ69848.1|2171224_2171461_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69849.1|2171613_2171784_-	50S ribosomal protein L13	NA	Q5G8X7	Enterobacteria_phage	44.6	1.4e-10
AUZ69850.1|2171783_2172164_-	hypothetical protein	NA	F1C5E2	Cronobacter_phage	52.8	2.9e-27
AUZ69851.1|2172166_2172568_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69852.1|2172579_2173665_-|coat	phage coat protein	coat	F1C5E1	Cronobacter_phage	67.3	9.6e-140
AUZ69853.1|2173676_2174108_-	hypothetical protein	NA	F1C5E0	Cronobacter_phage	72.7	1.1e-49
AUZ69854.1|2174111_2175497_-	DUF2213 domain-containing protein	NA	F1C5D9	Cronobacter_phage	59.1	2.5e-153
AUZ69855.1|2175509_2175710_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69856.1|2175783_2176296_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69857.1|2176335_2177340_-|head	phage head morphogenesis protein	head	F1C5D8	Cronobacter_phage	65.3	4.9e-106
AUZ69858.1|2177272_2178742_-	DUF1073 domain-containing protein	NA	F1C5D7	Cronobacter_phage	59.7	5.4e-154
AUZ69859.1|2178752_2180315_-|terminase	terminase	terminase	G8C7P3	Escherichia_phage	93.2	1.2e-303
AUZ69860.1|2180311_2180962_-	hypothetical protein	NA	G8C7P2	Escherichia_phage	80.1	3.8e-91
AUZ69861.1|2180965_2181169_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69862.1|2181364_2181916_+|protease	Clp protease	protease	NA	NA	NA	NA
AUZ69863.1|2181993_2182182_-	hypothetical protein	NA	K7PM01	Enterobacterial_phage	77.3	2.4e-14
AUZ69864.1|2182138_2182411_-	hypothetical protein	NA	G8C7W1	Escherichia_phage	62.2	2.8e-16
AUZ69865.1|2182407_2182950_-	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	70.9	1.2e-74
AUZ69866.1|2182946_2183228_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	41.0	1.8e-10
AUZ69867.1|2183224_2183623_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69868.1|2183949_2184639_-	antiterminator	NA	I6PDF8	Cronobacter_phage	56.3	3.1e-67
AUZ69869.1|2184635_2184773_-	hypothetical protein	NA	K7PHH3	Enterobacteria_phage	88.4	9.2e-16
AUZ69870.1|2184769_2185378_-	protein NinG	NA	A0A0M4RU10	Salmonella_phage	63.7	2.4e-47
AUZ69871.1|2185380_2185587_-	hypothetical protein	NA	K7PJT9	Enterobacteria_phage	78.8	1.8e-26
AUZ69872.1|2185586_2186186_-	hypothetical protein	NA	K7PKS6	Enterobacteria_phage	94.0	8.0e-104
AUZ69873.1|2186220_2186469_-	hypothetical protein	NA	K7PHG9	Enterobacteria_phage	90.2	8.3e-39
AUZ72567.1|2186579_2186813_-	DinI family protein	NA	K7PM44	Enterobacteria_phage	72.7	6.2e-28
AUZ69874.1|2187025_2187409_-	hypothetical protein	NA	G8C7V1	Escherichia_phage	62.7	1.7e-11
AUZ69875.1|2188113_2188512_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69876.1|2188508_2189276_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69877.1|2189808_2190294_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	78.1	8.8e-69
AUZ69878.1|2190544_2191297_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	87.6	1.1e-123
AUZ72568.1|2191299_2192217_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	75.1	4.3e-125
AUZ69879.1|2192295_2192835_-	regulator	NA	K7PJT7	Enterobacteria_phage	82.1	6.3e-76
AUZ69880.1|2192846_2193056_-	Rha family transcriptional regulator	NA	K7PKS2	Enterobacteria_phage	63.2	3.0e-18
AUZ69881.1|2193069_2193537_+	transcriptional regulator	NA	K7PHG0	Enterobacteria_phage	79.4	2.5e-60
AUZ69882.1|2193652_2193934_+	hypothetical protein	NA	A4KWR2	Enterobacteria_phage	77.4	1.1e-34
AUZ72569.1|2194120_2194462_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69883.1|2194491_2194689_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72570.1|2195111_2195318_+	cell division inhibitor protein	NA	K7P6H3	Enterobacteria_phage	98.5	1.6e-32
AUZ69884.1|2195633_2198480_+	exodeoxyribonuclease VIII	NA	K7P6V4	Enterobacteria_phage	58.3	3.4e-277
AUZ69885.1|2198494_2199535_+	enterohemolysin	NA	K7PKR8	Enterobacteria_phage	75.1	3.3e-153
AUZ69886.1|2199574_2199817_+	DUF4060 domain-containing protein	NA	K7PHF4	Enterobacteria_phage	89.6	9.5e-32
AUZ69887.1|2199881_2200154_+	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	61.1	4.7e-27
AUZ69888.1|2200122_2201208_+|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	66.2	2.7e-142
AUZ69889.1|2201544_2201883_-	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
2201282:2201311	attR	ACATAAAAAGAGACCGAATACGATTCCTGT	NA	NA	NA	NA
AUZ69890.1|2201903_2202776_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69891.1|2202779_2203154_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
AUZ69892.1|2203297_2203513_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	9.4e-15
>prophage 7
CP026231	Citrobacter freundii complex sp. CFNIH4 chromosome, complete genome	5079781	2230183	2265234	5079781	portal,coat,lysis,tail	Salmonella_phage(28.57%)	45	NA	NA
AUZ69921.1|2230183_2232391_-|tail	phage tail protein	tail	A5VW57	Enterobacteria_phage	52.0	1.9e-46
AUZ69922.1|2232526_2232781_+	toxin-antitoxin system HicB family antitoxin	NA	A0A088CPT2	Enterobacteria_phage	66.3	1.6e-21
AUZ69923.1|2233230_2233497_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69924.1|2233559_2235425_-	DNA transfer protein	NA	A0A192Y934	Salmonella_phage	68.0	5.7e-233
AUZ69925.1|2235424_2236753_-	acyltransferase	NA	I6RSG0	Salmonella_phage	46.5	2.8e-88
AUZ69926.1|2236762_2237422_-	DNA transfer protein	NA	A0A0A0P253	Enterobacteria_phage	43.7	7.1e-21
AUZ69927.1|2237405_2237789_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ69928.1|2237797_2238559_-	hypothetical protein	NA	Q9AYZ3	Salmonella_phage	41.3	2.8e-37
AUZ69929.1|2238551_2239097_-	endodeoxyribonuclease	NA	A0A2H4FQU5	Salmonella_phage	46.7	1.4e-38
AUZ69930.1|2239118_2240537_-	hypothetical protein	NA	I1TEJ1	Salmonella_phage	76.6	1.2e-214
AUZ69931.1|2240496_2241000_-	hypothetical protein	NA	I1TEJ0	Salmonella_phage	80.2	1.7e-70
AUZ69932.1|2240983_2241202_-	hypothetical protein	NA	A0A2D1GLK1	Escherichia_phage	68.0	5.1e-16
AUZ69933.1|2241252_2242542_-|coat	coat protein	coat	Q76H21	Enterobacteria_phage	85.0	1.2e-208
AUZ69934.1|2242541_2243453_-	scaffolding protein	NA	B9UDK2	Salmonella_phage	79.2	2.5e-125
AUZ69935.1|2243466_2245641_-|portal	portal protein	portal	A0A075B8I1	Enterobacteria_phage	79.2	0.0e+00
AUZ69936.1|2245640_2247089_-	DNA packaging protein	NA	Q2A0C1	Sodalis_phage	68.5	2.9e-200
AUZ72574.1|2247057_2247546_-	DNA packaging protein	NA	A0A2K8HN72	Pseudomonas_phage	52.8	1.0e-32
AUZ69937.1|2247629_2248175_-	hypothetical protein	NA	A0A1V0E5P7	Salmonella_phage	65.5	1.1e-56
AUZ69938.1|2248354_2248822_-|lysis	lysis protein	lysis	A0A1V0E5Q6	Salmonella_phage	76.1	7.2e-60
AUZ69939.1|2248818_2249322_-	lysozyme	NA	K7P7Q3	Enterobacteria_phage	87.4	2.7e-81
AUZ69940.1|2249293_2249497_-	hypothetical protein	NA	I6R0S9	Salmonella_phage	84.1	1.3e-26
AUZ69941.1|2249937_2250471_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72575.1|2250695_2251994_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69942.1|2252188_2252533_-	antitermination protein	NA	A0A0P0ZCW0	Stx2-converting_phage	89.1	2.3e-55
AUZ69943.1|2252614_2253586_-	DNA primase	NA	A0A1B5FPA8	Escherichia_phage	80.7	4.2e-155
AUZ69944.1|2253582_2255202_-	helicase	NA	F1C598	Cronobacter_phage	87.4	1.1e-280
AUZ69945.1|2255629_2255917_-	hypothetical protein	NA	A0A286S2B5	Klebsiella_phage	75.0	1.3e-27
AUZ69946.1|2255909_2256149_-	Cro/Cl family transcriptional regulator	NA	NA	NA	NA	NA
AUZ72576.1|2256254_2256923_+	LexA family transcriptional repressor	NA	A0A2H4J176	uncultured_Caudovirales_phage	53.8	1.0e-54
AUZ69947.1|2257066_2257369_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69948.1|2257433_2257820_+	peptidase S24	NA	F1C5A0	Cronobacter_phage	64.0	3.6e-41
AUZ69949.1|2257926_2258280_+	hypothetical protein	NA	A0A1B5FPB3	Escherichia_phage	67.3	9.3e-36
AUZ69950.1|2258279_2258783_+	hypothetical protein	NA	F1C5A2	Cronobacter_phage	59.3	1.2e-52
AUZ69951.1|2258794_2259073_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69952.1|2259065_2259824_+	DNA-binding protein	NA	A0A286S260	Klebsiella_phage	41.7	6.7e-39
AUZ69953.1|2259805_2260246_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69954.1|2260242_2260467_+	hypothetical protein	NA	A0A1B5FPG2	Escherichia_phage	69.4	7.8e-20
AUZ69955.1|2260463_2260676_+	hypothetical protein	NA	A0A286S2B6	Klebsiella_phage	77.1	2.9e-24
AUZ69956.1|2260672_2261134_+	ATPase	NA	A0A1B5FPC7	Escherichia_phage	52.6	8.4e-45
AUZ69957.1|2261133_2261496_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69958.1|2261644_2261881_+	excisionase	NA	Q8W657	Enterobacteria_phage	93.6	1.6e-39
AUZ69959.1|2261936_2263250_+	DUF3596 domain-containing protein	NA	Q8W658	Enterobacteria_phage	80.3	6.0e-213
AUZ69960.1|2263237_2264002_+	hypothetical protein	NA	Q859D1	Escherichia_coli_phage	79.5	1.2e-56
AUZ69961.1|2264054_2264450_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ69962.1|2264490_2265234_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	F5B419	Synechococcus_phage	31.3	3.2e-25
>prophage 8
CP026231	Citrobacter freundii complex sp. CFNIH4 chromosome, complete genome	5079781	2419685	2427310	5079781		Enterobacteria_phage(42.86%)	7	NA	NA
AUZ70122.1|2419685_2420690_+	NAD-dependent epimerase	NA	A0A0K0KW07	Prochlorococcus_phage	32.2	6.6e-18
AUZ70123.1|2420748_2421915_-	UDP-glucose 6-dehydrogenase	NA	M1I798	Paramecium_bursaria_Chlorella_virus	55.0	1.5e-114
AUZ70124.1|2422113_2423520_-	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.5	2.3e-37
AUZ70125.1|2423852_2424725_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.2	1.7e-107
AUZ70126.1|2424763_2425663_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	3.0e-30
AUZ70127.1|2425662_2426751_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	52.0	4.1e-98
AUZ70128.1|2426767_2427310_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	60.7	3.3e-56
>prophage 9
CP026231	Citrobacter freundii complex sp. CFNIH4 chromosome, complete genome	5079781	2478498	2488076	5079781	protease	Bacillus_phage(28.57%)	8	NA	NA
AUZ70166.1|2478498_2479902_+	two-component system sensor histidine kinase BaeA	NA	W8CYF6	Bacillus_phage	29.6	3.9e-32
AUZ70167.1|2479898_2480621_+	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	32.7	9.2e-30
AUZ70168.1|2480756_2481089_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AUZ70169.1|2481248_2482610_+	U32 family peptidase	NA	Q6DW11	Phage_TP	92.9	5.3e-204
AUZ70170.1|2482879_2485156_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.1	1.4e-164
AUZ70171.1|2485186_2485507_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	3.5e-13
AUZ70172.1|2485830_2486055_+	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.7	3.6e-17
AUZ70173.1|2486129_2488076_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	41.8	2.4e-40
>prophage 10
CP026231	Citrobacter freundii complex sp. CFNIH4 chromosome, complete genome	5079781	2540179	2548598	5079781	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
AUZ70219.1|2540179_2542213_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	4.0e-54
AUZ70220.1|2542419_2542878_+	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	68.0	5.1e-50
AUZ72586.1|2542920_2543391_-	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	76.9	4.9e-64
AUZ70221.1|2543437_2544157_-	two-component system response regulator YehT	NA	NA	NA	NA	NA
AUZ70222.1|2544153_2545839_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.6	6.7e-281
AUZ70223.1|2546064_2546796_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	93.5	1.0e-105
AUZ70224.1|2546847_2546955_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ70225.1|2546935_2547667_-	osmoprotectant uptake system permease	NA	NA	NA	NA	NA
AUZ70226.1|2547650_2548598_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.2	1.2e-21
>prophage 11
CP026231	Citrobacter freundii complex sp. CFNIH4 chromosome, complete genome	5079781	2636705	2639957	5079781		Enterobacteria_phage(33.33%)	6	NA	NA
AUZ70301.1|2636705_2637095_-	DNA polymerase V	NA	Q1MVE7	Enterobacteria_phage	73.6	1.6e-52
AUZ70302.1|2637173_2637416_+	DinI family protein	NA	Q6UAW0	Klebsiella_phage	76.6	4.4e-29
AUZ70303.1|2637483_2638557_-	hypothetical protein	NA	H6WRW6	Salmonella_phage	52.0	1.7e-88
AUZ70304.1|2638615_2638855_-	cor protein	NA	K7PLZ0	Enterobacterial_phage	57.1	7.0e-19
AUZ70305.1|2638964_2639639_-	hypothetical protein	NA	O64337	Escherichia_phage	52.9	1.3e-54
AUZ70306.1|2639639_2639957_-	hypothetical protein	NA	K7P7E0	Enterobacteria_phage	53.9	3.3e-24
>prophage 12
CP026231	Citrobacter freundii complex sp. CFNIH4 chromosome, complete genome	5079781	2643181	2681296	5079781	portal,tail,holin,transposase,terminase	Enterobacteria_phage(27.27%)	54	NA	NA
AUZ70307.1|2643181_2643790_-|tail	tail assembly protein	tail	K7PM69	Enterobacteria_phage	82.7	1.8e-87
AUZ70308.1|2643869_2644082_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ70309.1|2644147_2644864_-	peptidase P60	NA	K7PGR2	Enterobacteria_phage	89.8	1.2e-133
AUZ70310.1|2644865_2645621_-|tail	phage minor tail protein L	tail	K7PGX3	Enterobacteria_phage	85.3	1.8e-129
AUZ70311.1|2645617_2645965_-|tail	phage tail protein	tail	K7PJT2	Enterobacteria_phage	69.6	9.5e-41
AUZ70312.1|2645968_2649112_-|tail	phage tail tape measure protein	tail	E4WL33	Enterobacteria_phage	85.9	0.0e+00
AUZ70313.1|2649095_2649410_-|tail	phage tail assembly protein T	tail	E4WL32	Enterobacteria_phage	93.3	1.1e-51
AUZ70314.1|2649418_2649850_-|tail	phage minor tail protein G	tail	M9NZD7	Enterobacteria_phage	72.7	6.0e-53
AUZ70315.1|2649860_2650604_-|tail	phage tail protein	tail	K7PKX6	Enterobacterial_phage	91.1	5.2e-121
AUZ70316.1|2650613_2651015_-|tail	phage tail protein	tail	K7PHM6	Enterobacterial_phage	89.5	7.5e-66
AUZ70317.1|2651011_2651590_-|tail	phage tail protein	tail	K7PMB7	Enterobacterial_phage	95.3	1.4e-92
AUZ70318.1|2651598_2651874_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	60.4	5.8e-25
AUZ72588.1|2651866_2652193_-	DUF2190 domain-containing protein	NA	K7PJY3	Enterobacterial_phage	59.3	2.1e-29
AUZ70319.1|2652284_2654309_-	peptidase S14	NA	K7PKX4	Enterobacterial_phage	85.8	0.0e+00
AUZ70320.1|2654253_2655762_-|portal	phage portal protein	portal	K7PHM5	Enterobacterial_phage	86.1	3.0e-256
AUZ72589.1|2655758_2655974_-	hypothetical protein	NA	A5LH28	Enterobacteria_phage	81.4	5.9e-25
AUZ70321.1|2655970_2658073_-	DNA packaging protein	NA	K7PH52	Enterobacterial_phage	82.1	0.0e+00
AUZ70322.1|2658072_2658564_-|terminase	terminase	terminase	K7PJY2	Enterobacterial_phage	84.7	6.4e-67
AUZ70323.1|2658623_2658809_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ70324.1|2658779_2659319_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AUZ70325.1|2659315_2659933_-	endolysin	NA	Q8HA86	Salmonella_phage	79.4	4.2e-92
AUZ70326.1|2659932_2660214_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	49.5	3.3e-20
AUZ70327.1|2660200_2660587_-	hypothetical protein	NA	A0A192Y8P2	Salmonella_phage	92.2	1.8e-56
AUZ70328.1|2660733_2661786_-	DNA adenine methylase	NA	Q8SBE2	Shigella_phage	80.7	3.5e-171
AUZ70329.1|2661936_2662128_-	TrmB family transcriptional regulator	NA	Q8SBE3	Shigella_phage	87.3	5.8e-24
AUZ70330.1|2662292_2662541_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ70331.1|2662779_2662965_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ70332.1|2662998_2664118_+|transposase	IS3-like element ISSen4 family transposase	transposase	S5WIU1	Leptospira_phage	42.8	1.7e-51
AUZ72590.1|2664187_2664952_+	hypothetical protein	NA	A5LH79	Enterobacteria_phage	49.6	5.1e-63
AUZ70333.1|2664970_2665420_+	hypothetical protein	NA	A5LH78	Enterobacteria_phage	44.6	2.0e-22
AUZ70334.1|2665458_2665824_-	antitermination protein Q	NA	K7PGW2	Enterobacterial_phage	90.0	4.5e-57
AUZ70335.1|2665840_2666836_-	hypothetical protein	NA	A0A291AWV9	Escherichia_phage	69.9	2.5e-142
AUZ70336.1|2666832_2667516_-	phage regulatory protein/antirepressor Ant	NA	G0ZND1	Cronobacter_phage	60.0	3.0e-62
AUZ70337.1|2667529_2667916_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A192Y8N5	Salmonella_phage	89.1	2.4e-61
AUZ70338.1|2668030_2669353_-	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	52.3	3.7e-117
AUZ70339.1|2669349_2670207_-	GntR family transcriptional regulator	NA	A0A1C9IHW0	Salmonella_phage	96.6	5.9e-60
AUZ70340.1|2670196_2670376_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	71.2	6.6e-14
AUZ70341.1|2670548_2671100_-	DNA-binding protein	NA	A0A1C9II13	Salmonella_phage	68.4	6.1e-66
AUZ70342.1|2671143_2671344_-	transcriptional regulator	NA	U5P445	Shigella_phage	86.2	8.4e-26
AUZ70343.1|2671432_2672107_+	LexA family transcriptional repressor	NA	U5P0T5	Shigella_phage	83.0	3.8e-110
AUZ70344.1|2672690_2673062_+	hypothetical protein	NA	Q8HAA1	Salmonella_phage	92.7	1.1e-58
AUZ70345.1|2673118_2673946_+	hypothetical protein	NA	Q8HAA2	Salmonella_phage	91.3	6.6e-141
AUZ70346.1|2674074_2674614_+	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	80.4	9.5e-80
AUZ70347.1|2674774_2675029_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ70348.1|2675025_2675370_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ70349.1|2675362_2675695_+	hypothetical protein	NA	A0A1I9KFB7	Aeromonas_phage	47.6	7.5e-19
AUZ72591.1|2676033_2676726_+	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	76.7	1.9e-48
AUZ70350.1|2676722_2677286_+	3'-5' exoribonuclease	NA	K7PLW7	Enterobacteria_phage	81.0	4.0e-89
AUZ70351.1|2677336_2677546_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ70352.1|2677548_2678736_+	recombinase	NA	A0A2D1GN00	Marinobacter_phage	29.6	4.7e-31
AUZ70353.1|2678765_2679152_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ70354.1|2679138_2679909_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ70355.1|2680583_2680805_-	DNA polymerase V	NA	A0A222YZE2	Escherichia_phage	74.0	2.3e-24
AUZ70356.1|2681053_2681296_+	DinI family protein	NA	Q6UAW0	Klebsiella_phage	76.6	1.7e-28
>prophage 13
CP026231	Citrobacter freundii complex sp. CFNIH4 chromosome, complete genome	5079781	3409161	3466983	5079781	integrase,transposase	Bacillus_phage(21.05%)	56	3409106:3409165	3465871:3466930
3409106:3409165	attL	GGCTTTGTTGAATAAATCAGATTTCGGGTAAGTCTCCCCCGTAGCGGGTTGTGTTTTCAG	NA	NA	NA	NA
AUZ70971.1|3409161_3410130_-|transposase	IS5-like element IS903B family transposase	transposase	A0A1B0VFY5	Salmonella_phage	99.7	2.1e-186
AUZ70972.1|3410221_3410758_+	N-acetyltransferase	NA	NA	NA	NA	NA
AUZ70973.1|3410907_3412143_+|integrase	integrase	integrase	NA	NA	NA	NA
AUZ70974.1|3412395_3413067_+	EAL domain-containing protein	NA	NA	NA	NA	NA
AUZ70975.1|3413704_3414872_+	DDE domain-containing protein	NA	Q716C2	Shigella_phage	89.5	8.4e-166
AUZ70976.1|3415248_3415674_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	70.7	5.2e-49
AUZ70977.1|3415686_3416976_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4J144	uncultured_Caudovirales_phage	73.5	2.1e-170
AUZ70978.1|3417023_3418775_-	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
AUZ70979.1|3418791_3419154_-	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA	NA
AUZ70980.1|3419201_3419552_-	transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	51.9	3.6e-24
AUZ70981.1|3421095_3421530_-	copper-binding protein	NA	NA	NA	NA	NA
AUZ70982.1|3421745_3423146_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	26.9	6.4e-19
AUZ70983.1|3423142_3423823_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	34.4	8.7e-30
AUZ70984.1|3423877_3424807_-	copper resistance protein D	NA	NA	NA	NA	NA
AUZ70985.1|3424811_3425192_-	copper resistance system chaperone PcoC	NA	NA	NA	NA	NA
AUZ70986.1|3425231_3426128_-	copper resistance protein B	NA	NA	NA	NA	NA
AUZ70987.1|3426127_3427945_-	multicopper oxidase PcoA	NA	NA	NA	NA	NA
AUZ70988.1|3428179_3428629_+	copper resistance protein	NA	NA	NA	NA	NA
AUZ70989.1|3428917_3429655_+	peptidase M23	NA	A8ATH6	Listeria_phage	41.0	1.0e-12
AUZ70990.1|3429688_3429886_-	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
AUZ70991.1|3429926_3432380_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	34.9	7.6e-84
AUZ70992.1|3432506_3432947_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ70993.1|3433033_3436180_-	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA	NA
AUZ70994.1|3436190_3437483_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUZ70995.1|3437596_3437950_-	copper ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUZ70996.1|3437978_3439364_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ70997.1|3439426_3439552_-	outer-membrane efflux lipo domain protein	NA	NA	NA	NA	NA
AUZ70998.1|3439553_3440234_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.7	7.8e-31
AUZ70999.1|3440226_3441702_+	GHKL domain-containing protein	NA	W8CYF6	Bacillus_phage	29.7	1.8e-27
AUZ71000.1|3441952_3442384_+	silver-binding protein SilE	NA	NA	NA	NA	NA
AUZ71001.1|3442921_3444041_+|transposase	IS3-like element ISSen4 family transposase	transposase	S5WIU1	Leptospira_phage	42.8	1.7e-51
AUZ71002.1|3444068_3445259_-	DUF4102 domain-containing protein	NA	Q7M297	Enterobacteria_phage	61.2	3.6e-140
AUZ71003.1|3445596_3446436_-	DUF4942 domain-containing protein	NA	NA	NA	NA	NA
AUZ71004.1|3446522_3446912_-	toxin CbtA	NA	NA	NA	NA	NA
AUZ71005.1|3446968_3447328_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA	NA
AUZ71006.1|3447352_3447574_-	DUF987 domain-containing protein	NA	NA	NA	NA	NA
AUZ71007.1|3447587_3448067_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ71008.1|3448078_3448522_-	antirestriction protein	NA	A0A2D0W9W4	Bordetella_phage	33.6	7.4e-14
AUZ71009.1|3448601_3448832_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ71010.1|3448855_3449689_-	DUF945 domain-containing protein	NA	A0A2C9CX26	Yersinia_phage	36.2	5.4e-42
AUZ71011.1|3449742_3450723_+|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	98.5	9.8e-184
AUZ72621.1|3450761_3450848_-	ABC transporter	NA	NA	NA	NA	NA
AUZ71012.1|3451564_3452197_+	DUF3296 domain-containing protein	NA	NA	NA	NA	NA
AUZ71013.1|3452431_3453889_+	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
AUZ71014.1|3454231_3455098_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ71015.1|3455210_3455453_+	AlpA family phage regulatory protein	NA	A0A1V0E8E5	Vibrio_phage	42.4	8.1e-07
AUZ72622.1|3455755_3455962_+	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
AUZ71016.1|3456513_3456819_-	addiction module antidote protein, HigA family	NA	NA	NA	NA	NA
AUZ71017.1|3457717_3458431_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AUZ71018.1|3458653_3459241_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ71019.1|3459669_3460707_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
AUZ71020.1|3460703_3463265_-	fimbrial protein	NA	NA	NA	NA	NA
AUZ71021.1|3463340_3464069_-	pilus assembly protein PapD	NA	NA	NA	NA	NA
AUZ71022.1|3464150_3464708_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
AUZ71023.1|3464905_3465874_+|transposase	IS5-like element IS903B family transposase	transposase	A0A1B0VFY5	Salmonella_phage	99.7	2.1e-186
AUZ71024.1|3466002_3466983_+|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	98.5	9.8e-184
3465871:3466930	attR	CTGAAAACACAACCCGCTACGGGGGAGACTTACCCGAAATCTGATTTATTCAACAAAGCCTTAGGGAAGGTGCGAACAAGTTCCTGATATGAGATCATCATATTCATCCGGAGCGCATCCCAGAGGGACATCATGAGCCATCAACTCACCTTCGCCGATAGTGAATTCAGCACTAAGCGCCGTCAGACCCGAAAAGAGATTTTCCTCTCCCGCATGGAGCAGATTCTGCCATGGCAGAATATGACCGCTGTCATCGAGCCGTTTTATCCCAAGGCGGGCAATGGCCGACGGCCCTATCCGCTGGAGACCATGCTGCGTATTTACTGCATGCAGCATTGGTACAACCTGAGCGACGGTGCCATGGAAGATGCCCTGTACGAAATCGCCTCCATGCGCCTGTTTGCCCGATTATCCCTGGATAGCGCCCTGCCGGATCGCACCACCATCATGAATTTCCGCCACCTGCTCGAGCAGCATCAACTGGCCCGTCAATTGTTCAAGACCATCAATCGCTGGCTGGCCGAAGCAGGCGTCATGATGACCCAAGGCACTTTGGTGGATGCCACCATCATTGAGGCACCCAGCTCTACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTGGCATGAAGGCCCACATTGGTGTCGATGCCAAGAGTGGCCTGACCCACAGCCTAGTTACCACCGCGGCCAACGAGCATGACCTCAATCAGCTGTGTAATCTGCTTCATGGAGAGGAGCAATTTGTCTCAGCCGATGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGCCGAGGTGGATGTTGACTGGCTGATCGCCGAGCGTCCCGGCAAGGTAAAAACCTTGAAGCAGCATCCGCGCAAGAACAAAACGGCCATCAACATCGAATACATGAAAGCCAGCATCCGTGCCAAGGTGGAGCACCCGTTTCGCATCATCAAGCGGCAGTTCGGCTTCGTGAAAGCCAGATACAAGGGGCTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACCCTGG	NA	NA	NA	NA
>prophage 14
CP026231	Citrobacter freundii complex sp. CFNIH4 chromosome, complete genome	5079781	3862835	3944505	5079781	protease,portal,integrase,tail,head,transposase,terminase,tRNA,capsid	uncultured_Caudovirales_phage(47.37%)	82	3899852:3899869	3920838:3920855
AUZ71378.1|3862835_3863339_-|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	54.8	7.3e-26
AUZ71379.1|3863344_3863983_-	stringent starvation protein A	NA	NA	NA	NA	NA
AUZ71380.1|3864097_3864382_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ71381.1|3864299_3864692_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
AUZ71382.1|3864707_3865136_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
AUZ71383.1|3865354_3866482_-	cell division protein ZapE	NA	NA	NA	NA	NA
AUZ71384.1|3866674_3867073_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ71385.1|3867241_3868609_+|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	25.3	2.5e-20
AUZ71386.1|3868698_3869766_+|protease	serine endoprotease DegS	protease	NA	NA	NA	NA
AUZ71387.1|3869822_3870758_-	malate dehydrogenase	NA	NA	NA	NA	NA
AUZ71388.1|3871194_3871665_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
AUZ71389.1|3872041_3872308_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
AUZ71390.1|3872365_3872644_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ71391.1|3872763_3874731_-	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA	NA
AUZ71392.1|3874736_3875669_-	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA	NA
AUZ71393.1|3875676_3875880_-	protein AaeX	NA	NA	NA	NA	NA
AUZ71394.1|3876064_3876994_+	transcriptional regulator	NA	NA	NA	NA	NA
AUZ72651.1|3877080_3878526_-|protease	metalloprotease TldD	protease	NA	NA	NA	NA
AUZ71395.1|3878687_3882503_-	DUF3971 domain-containing protein	NA	NA	NA	NA	NA
AUZ71396.1|3882615_3884085_-	ribonuclease G	NA	NA	NA	NA	NA
AUZ71397.1|3884074_3884668_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AUZ71398.1|3884675_3885164_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
AUZ71399.1|3885164_3886187_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
AUZ71400.1|3886253_3887297_-	rod shape-determining protein	NA	F2Y0P3	Organic_Lake_phycodnavirus	22.3	6.7e-05
AUZ72652.1|3887394_3887595_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ71401.1|3887603_3889544_-	RNase E specificity factor CsrD	NA	NA	NA	NA	NA
AUZ71402.1|3889769_3890744_+	oxidoreductase	NA	NA	NA	NA	NA
AUZ71403.1|3891868_3892468_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
AUZ71404.1|3892860_3893331_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AUZ71405.1|3893341_3894691_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AUZ71406.1|3894798_3895041_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ71407.1|3895030_3896482_+	sodium/panthothenate symporter	NA	NA	NA	NA	NA
AUZ71408.1|3896493_3897375_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
AUZ71409.1|3897503_3898280_+	carbonic anhydrase	NA	NA	NA	NA	NA
AUZ71410.1|3898578_3899544_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AUZ71411.1|3899569_3899866_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
3899852:3899869	attL	TACGGCATGAACTGATAC	NA	NA	NA	NA
AUZ71412.1|3900023_3900332_-	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
AUZ71413.1|3900482_3902144_-|terminase	terminase large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	98.0	0.0e+00
AUZ71414.1|3902127_3902484_-|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	99.2	5.5e-60
AUZ71415.1|3902441_3902633_-|terminase	terminase	terminase	NA	NA	NA	NA
AUZ71416.1|3902759_3903203_-	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	92.5	5.6e-78
AUZ71417.1|3903202_3903496_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JD08	uncultured_Caudovirales_phage	84.5	5.9e-44
AUZ71418.1|3903492_3903831_-|head,tail	head-tail adaptor protein	head,tail	A0A2H4JHK5	uncultured_Caudovirales_phage	94.6	3.6e-53
AUZ72653.1|3903827_3905054_-|portal	phage portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	97.5	5.2e-235
AUZ71419.1|3905064_3905625_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	98.4	7.7e-101
AUZ71420.1|3905676_3906843_-|capsid	phage major capsid protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	98.7	1.1e-213
AUZ72654.1|3907170_3907803_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ71421.1|3907831_3909235_-|transposase	ISNCY family transposase ISKpn21	transposase	NA	NA	NA	NA
AUZ72655.1|3909453_3910086_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ71422.1|3910114_3911518_-|transposase	ISNCY family transposase ISKpn21	transposase	NA	NA	NA	NA
AUZ71423.1|3911641_3911905_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ71424.1|3911964_3912258_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ71425.1|3912551_3915239_-	propanediol utilization protein	NA	A0A1W6JPG0	Morganella_phage	39.8	4.1e-184
AUZ71426.1|3915235_3915490_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ71427.1|3915479_3915686_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ71428.1|3915682_3915877_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72656.1|3915869_3916061_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA	NA
AUZ72657.1|3916200_3916392_+	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
AUZ71429.1|3916975_3917812_-	antA/AntB antirepressor family protein	NA	A0A0P0ZCA2	Stx2-converting_phage	45.2	1.2e-20
AUZ71430.1|3917951_3918236_-	transcriptional regulator	NA	NA	NA	NA	NA
AUZ72658.1|3918796_3919447_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ71431.1|3919446_3920667_-|integrase	integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	62.7	1.0e-153
AUZ71432.1|3920940_3921825_+	adenine-specific DNA-methyltransferase	NA	M4QNN5	Ostreococcus_lucimarinus_virus	32.8	2.1e-28
3920838:3920855	attR	TACGGCATGAACTGATAC	NA	NA	NA	NA
AUZ71433.1|3921907_3922072_+	DUF2556 domain-containing protein	NA	NA	NA	NA	NA
AUZ71434.1|3922117_3922774_-	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA	NA
AUZ71435.1|3923193_3924354_+	MexX family efflux pump subunit	NA	NA	NA	NA	NA
AUZ71436.1|3924365_3927479_+	hydrophobe/amphiphile efflux-1 family RND transporter	NA	NA	NA	NA	NA
AUZ71437.1|3927749_3927971_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ71438.1|3928431_3929457_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	39.5	9.0e-71
AUZ71439.1|3929526_3930708_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUZ71440.1|3930717_3931821_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUZ71441.1|3931828_3932587_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	3.1e-20
AUZ71442.1|3938341_3938554_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ71443.1|3938581_3939136_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
AUZ71444.1|3939111_3939369_-	DUF1488 domain-containing protein	NA	NA	NA	NA	NA
AUZ71445.1|3939365_3940187_-	shikimate dehydrogenase	NA	NA	NA	NA	NA
AUZ71446.1|3940188_3940761_-	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA	NA
AUZ71447.1|3940765_3941308_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ71448.1|3941334_3941808_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
AUZ71449.1|3941779_3942904_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
AUZ71450.1|3943033_3943543_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	40.3	2.6e-18
AUZ71451.1|3943557_3944505_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	39.8	2.0e-08
>prophage 15
CP026231	Citrobacter freundii complex sp. CFNIH4 chromosome, complete genome	5079781	4523575	4608387	5079781	protease,portal,integrase,tail,holin,plate,terminase,tRNA,capsid	Salmonella_phage(73.81%)	97	4541481:4541501	4591730:4591750
AUZ71979.1|4523575_4524013_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
AUZ71980.1|4524009_4524999_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUZ71981.1|4525149_4526058_-	alpha/beta hydrolase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	32.4	7.0e-27
AUZ72680.1|4526257_4526506_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
AUZ71982.1|4526505_4526880_+	PIN domain-containing protein	NA	NA	NA	NA	NA
AUZ71983.1|4526916_4527846_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA	NA
AUZ71984.1|4527842_4528478_-	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA	NA
AUZ71985.1|4528474_4529377_-	formate dehydrogenase subunit beta	NA	NA	NA	NA	NA
AUZ71986.1|4529389_4532440_-	formate dehydrogenase-N subunit alpha	NA	A0A077SK27	Escherichia_phage	23.7	6.5e-08
AUZ71987.1|4532633_4533470_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA	NA
AUZ71988.1|4533436_4533943_-	YgjV family protein	NA	NA	NA	NA	NA
AUZ71989.1|4534001_4534523_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
AUZ71990.1|4534652_4534865_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
AUZ71991.1|4534921_4536667_-	HTH domain-containing protein	NA	NA	NA	NA	NA
AUZ71992.1|4536666_4537737_-	peptidase	NA	NA	NA	NA	NA
AUZ71993.1|4537726_4539172_-	PTS subunit IIBC	NA	NA	NA	NA	NA
AUZ71994.1|4539182_4539629_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
AUZ71995.1|4539811_4540135_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AUZ71996.1|4540134_4540794_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUZ71997.1|4540895_4541444_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
4541481:4541501	attL	CGCCTTATCCGGCCTACAAGA	NA	NA	NA	NA
AUZ71998.1|4541501_4541816_-	L-rhamnose mutarotase	NA	NA	NA	NA	NA
AUZ71999.1|4541812_4542961_-	lactaldehyde reductase	NA	NA	NA	NA	NA
AUZ72000.1|4543087_4543915_-	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA	NA
AUZ72001.1|4543973_4545233_-	L-rhamnose isomerase	NA	NA	NA	NA	NA
AUZ72002.1|4545229_4546699_-	rhamnulokinase	NA	NA	NA	NA	NA
AUZ72003.1|4547002_4547851_+	HTH-type transcriptional activator RhaS	NA	NA	NA	NA	NA
AUZ72004.1|4547982_4548831_+	HTH-type transcriptional activator RhaR	NA	NA	NA	NA	NA
AUZ72005.1|4548827_4549862_-	L-rhamnose/proton symporter RhaT	NA	NA	NA	NA	NA
AUZ72006.1|4550151_4550772_+	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	57.4	1.0e-61
AUZ72007.1|4551005_4551989_+	2-keto-3-deoxygluconate transporter	NA	NA	NA	NA	NA
AUZ72008.1|4552030_4552927_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
AUZ72009.1|4553079_4553754_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AUZ72010.1|4553815_4555189_-	two-component system sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.9	1.1e-15
AUZ72011.1|4555185_4555884_-	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	29.5	1.5e-05
AUZ72012.1|4556034_4556535_+	stress adaptor protein CpxP	NA	NA	NA	NA	NA
AUZ72013.1|4556711_4557692_-|integrase	integrase	integrase	A0A0M4RTQ0	Salmonella_phage	96.0	1.2e-181
AUZ72014.1|4557758_4558082_-	transcriptional regulator	NA	A0A0M5M1I9	Salmonella_phage	82.2	8.8e-41
AUZ72015.1|4558182_4558464_+	regulator	NA	A0A0M4RCW1	Salmonella_phage	97.8	9.0e-50
AUZ72016.1|4558476_4558680_+	DUF4761 domain-containing protein	NA	A0A0M5M1I3	Salmonella_phage	68.2	5.9e-19
AUZ72017.1|4558855_4559089_+	hypothetical protein	NA	A0A0M4S6M9	Salmonella_phage	69.9	8.3e-25
AUZ72018.1|4559085_4559295_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ72019.1|4559302_4559575_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ72020.1|4559642_4559867_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ72021.1|4559863_4560430_+	ribonuclease	NA	D4HTX2	Vibrio_phage	28.9	5.2e-12
AUZ72022.1|4561300_4561498_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ72023.1|4561497_4561767_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ72024.1|4561949_4562870_+	DNA cytosine methyltransferase	NA	A0A0M3ULA1	Salmonella_phage	54.8	8.5e-97
AUZ72025.1|4562862_4565502_+	replication endonuclease	NA	A0A0M4RTM8	Salmonella_phage	52.2	2.5e-194
AUZ72026.1|4565517_4565733_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ72681.1|4565836_4566532_+	DNA methylase	NA	A0A0M4S5U3	Salmonella_phage	75.2	1.5e-93
AUZ72027.1|4566738_4566948_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ72028.1|4566914_4567961_-|portal	phage portal protein	portal	A0A0M5M1H6	Salmonella_phage	76.1	1.0e-154
AUZ72029.1|4567963_4569682_-	oxidoreductase	NA	A0A0M4S6K7	Salmonella_phage	73.1	1.6e-234
AUZ72030.1|4569828_4570668_+|capsid	phage capsid protein	capsid	A0A1J0I2E9	Salmonella_phage	62.4	9.5e-95
AUZ72031.1|4570706_4571753_+|capsid	phage major capsid protein, P2 family	capsid	A0A0M3ULA3	Salmonella_phage	90.5	8.0e-184
AUZ72032.1|4571797_4572643_+|terminase	terminase	terminase	A0A0M4R523	Salmonella_phage	63.2	9.0e-77
AUZ72033.1|4572742_4573231_+|capsid	capsid assembly protein	capsid	A0A0M4QWR7	Salmonella_phage	88.8	1.4e-77
AUZ72034.1|4573230_4573434_+|tail	phage tail protein	tail	A0A0M4RTN6	Salmonella_phage	73.1	9.8e-22
AUZ72035.1|4573443_4573773_+|holin	phage holin, lambda family	holin	A0A0M3ULH4	Salmonella_phage	89.9	2.9e-47
AUZ72036.1|4573765_4574155_+	peptidase M15	NA	A0A060DAL8	Salmonella_phage	89.1	1.5e-63
AUZ72682.1|4574196_4574721_+	DUF2514 domain-containing protein	NA	A0A0M4S5V1	Salmonella_phage	65.9	1.0e-06
AUZ72037.1|4574720_4575005_+	hypothetical protein	NA	Q8W634	Enterobacteria_phage	63.0	1.7e-27
AUZ72038.1|4575062_4575530_+|tail	phage tail protein	tail	A0A0M4R2U5	Salmonella_phage	76.3	9.1e-63
AUZ72039.1|4575530_4576163_+	phage virion morphogenesis protein	NA	A0A0M4RCU1	Salmonella_phage	80.6	2.8e-91
AUZ72683.1|4576343_4576973_+|plate	phage baseplate assembly protein V	plate	A0A0M3ULA5	Salmonella_phage	57.2	8.8e-61
AUZ72040.1|4576969_4577335_+|plate	baseplate assembly protein	plate	A0A0M4S6L5	Salmonella_phage	70.6	5.8e-41
AUZ72041.1|4577331_4578243_+|plate	baseplate assembly protein	plate	A0A0M4REB7	Salmonella_phage	84.8	4.0e-139
AUZ72042.1|4578235_4578844_+|tail	phage tail protein I	tail	E5G6N9	Salmonella_phage	84.4	2.3e-98
AUZ72684.1|4580788_4581280_+|tail	phage tail protein	tail	U5P083	Shigella_phage	35.5	1.7e-11
AUZ72043.1|4581406_4581856_-	oxidoreductase	NA	A0A1J0I2L5	Salmonella_phage	77.7	7.9e-64
AUZ72044.1|4581867_4584798_-|tail	phage tail tape measure protein	tail	A0A0M4R2V3	Salmonella_phage	64.2	1.1e-235
AUZ72045.1|4584798_4584915_-|tail	GpE family phage tail protein	tail	A0A0M3ULA8	Salmonella_phage	91.9	6.2e-13
AUZ72046.1|4584923_4585262_-|tail	phage tail assembly protein	tail	A0A0M4RCV2	Salmonella_phage	80.6	1.6e-40
AUZ72047.1|4585276_4585792_-|tail	phage major tail tube protein	tail	A0A0M5M1I5	Salmonella_phage	88.9	1.4e-85
AUZ72048.1|4585804_4587001_-|tail	phage tail protein	tail	A0A0M4S6M1	Salmonella_phage	92.5	2.0e-210
AUZ72685.1|4587162_4588290_+	hypothetical protein	NA	A0A0M4REC6	Salmonella_phage	86.1	2.4e-170
AUZ72049.1|4588336_4588579_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ72050.1|4588617_4589343_-	hypothetical protein	NA	A0A218M4H5	Erwinia_phage	44.2	3.2e-54
AUZ72051.1|4589629_4590532_+	cation-efflux pump FieF	NA	NA	NA	NA	NA
AUZ72052.1|4590715_4591678_+	6-phosphofructokinase	NA	NA	NA	NA	NA
AUZ72053.1|4591881_4592871_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
4591730:4591750	attR	TCTTGTAGGCCGGATAAGGCG	NA	NA	NA	NA
AUZ72054.1|4592975_4593725_+	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA	NA
AUZ72055.1|4593798_4595103_+	citrate transporter	NA	NA	NA	NA	NA
AUZ72056.1|4595216_4596689_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUZ72057.1|4596728_4597496_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AUZ72058.1|4597607_4598204_-	DUF1454 domain-containing protein	NA	NA	NA	NA	NA
AUZ72059.1|4598304_4598733_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
AUZ72060.1|4598796_4599543_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AUZ72061.1|4599638_4600649_-	fructose-bisphosphatase class II	NA	NA	NA	NA	NA
AUZ72062.1|4600784_4602293_-	glycerol kinase	NA	NA	NA	NA	NA
AUZ72063.1|4602314_4603160_-	aquaporin	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	29.5	1.8e-16
AUZ72064.1|4603588_4603834_+	septal ring assembly protein ZapB	NA	NA	NA	NA	NA
AUZ72065.1|4604036_4604780_-	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA	NA
AUZ72066.1|4604940_4605426_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA	NA
AUZ72067.1|4605518_4606448_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
AUZ72068.1|4606515_4607847_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.2	2.6e-46
AUZ72069.1|4607856_4608387_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 1
CP026233	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-0b27, complete sequence	206795	34013	64534	206795	head,transposase,tail	Acidithiobacillus_phage(16.67%)	45	NA	NA
AUZ72806.1|34013_34631_-|head,tail	phage head-tail adapter protein	head,tail	NA	NA	NA	NA
AUZ72807.1|34724_34943_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72808.1|35148_35805_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72809.1|35804_37232_-	DNA cytosine methyltransferase	NA	NA	NA	NA	NA
AUZ72810.1|37235_37736_-	hypothetical protein	NA	I3UMJ0	Colwellia_phage	43.3	1.7e-19
AUZ72811.1|37744_38077_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73007.1|38061_38493_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72812.1|38560_39235_-	thymidylate kinase	NA	NA	NA	NA	NA
AUZ72813.1|39209_39491_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72814.1|39483_39861_-	hypothetical protein	NA	A0A2H4P7P5	Pseudomonas_phage	49.6	2.2e-22
AUZ72815.1|40414_41050_+	restriction endonuclease subunit M	NA	NA	NA	NA	NA
AUZ72816.1|41102_41375_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72817.1|41423_42605_-	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	28.7	2.4e-11
AUZ72818.1|42608_43394_-	ParA family protein	NA	A0A1X9IGI7	Lactococcus_phage	26.4	6.1e-11
AUZ72819.1|43567_43879_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72820.1|43860_44310_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72821.1|44323_45358_-	site-specific DNA-methyltransferase	NA	H8ZMF1	Synechococcus_phage	20.9	1.0e-05
AUZ72822.1|45602_47144_+|transposase	IS21-like element ISAs29 family transposase	transposase	K4I413	Acidithiobacillus_phage	47.6	4.4e-130
AUZ72823.1|47158_47914_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	51.0	5.8e-59
AUZ72824.1|47973_48186_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72825.1|48178_48541_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72826.1|48543_48786_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72827.1|48785_49037_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72828.1|49023_49221_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72829.1|49220_50159_-	chromosome partitioning protein ParB	NA	A0A2P9HXK7	Yersinia_phage	50.2	1.5e-69
AUZ72830.1|50275_50821_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72831.1|50823_51393_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72832.1|51404_51623_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72833.1|51687_51969_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72834.1|51961_52390_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72835.1|52386_52734_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72836.1|52957_53794_-|transposase	IS5 family transposase ISEc61	transposase	NA	NA	NA	NA
AUZ72837.1|54540_55116_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	52.7	5.6e-46
AUZ73008.1|55242_55491_-	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA	NA
AUZ72838.1|55573_56521_-|transposase	IS30-like element ISAs2 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.7	1.4e-41
AUZ72839.1|56611_56818_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72840.1|57132_58095_-	HTH-type transcriptional regulator YidZ	NA	NA	NA	NA	NA
AUZ72841.1|58113_59286_-	multidrug transporter MdtL	NA	NA	NA	NA	NA
AUZ72842.1|59610_60759_-	cephalosporin-hydrolyzing class C beta-lactamase FOX-5	NA	NA	NA	NA	NA
AUZ72843.1|60841_61789_-|transposase	IS30-like element ISAs2 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.7	1.4e-41
AUZ72844.1|61832_62021_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72845.1|61951_62311_-	BLMT family bleomycin binding protein	NA	NA	NA	NA	NA
AUZ72846.1|62337_63132_-	APH(3')-II family aminoglycoside O-phosphotransferase	NA	Q75ZG1	Hepacivirus	74.3	6.4e-109
AUZ72847.1|63145_63460_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72848.1|63697_64534_+|transposase	IS5 family transposase ISEc61	transposase	NA	NA	NA	NA
>prophage 2
CP026233	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-0b27, complete sequence	206795	105435	155786	206795	integrase,transposase	Escherichia_phage(24.0%)	56	134419:134478	150866:151067
AUZ72904.1|105435_106446_-|integrase	integrase	integrase	A0A0K0N6I5	Gordonia_phage	31.9	3.1e-07
AUZ72905.1|106448_106985_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72906.1|106977_107265_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72907.1|107283_107604_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72908.1|107826_108429_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ72909.1|108444_108897_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72910.1|109063_109399_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72911.1|109658_109931_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72912.1|111277_111733_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUZ72913.1|111804_112170_+	mercuric transport protein	NA	NA	NA	NA	NA
AUZ72914.1|112185_112461_+	mercuric transporter periplasmic component	NA	NA	NA	NA	NA
AUZ72915.1|112488_112914_+	mercury transport protein MerC	NA	NA	NA	NA	NA
AUZ72916.1|112952_114647_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	8.8e-39
AUZ72917.1|114664_115027_+	transcriptional regulator	NA	NA	NA	NA	NA
AUZ72918.1|115023_115260_+	mercury resistance protein	NA	NA	NA	NA	NA
AUZ72919.1|115256_115964_+	EAL domain-containing protein	NA	NA	NA	NA	NA
AUZ72920.1|116002_117718_+|transposase	transposase	transposase	NA	NA	NA	NA
AUZ72921.1|117720_118581_+|transposase	transposase	transposase	NA	NA	NA	NA
AUZ72922.1|118631_120176_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	34.6	1.0e-38
AUZ72923.1|120298_121822_+|transposase	IS21 family transposase IS1326	transposase	A0A2L1IVA1	Escherichia_phage	24.2	1.2e-15
AUZ73012.1|121811_122594_+	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	35.0	2.5e-33
AUZ72924.1|122769_123270_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUZ72925.1|123288_123468_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ72926.1|123397_124249_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.1e-11
AUZ72927.1|124350_125310_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	40.5	1.7e-47
AUZ72928.1|125200_125905_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AUZ72929.1|125988_126873_-	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
AUZ72930.1|126928_128404_-	Msr family ABC-F type ribosomal protection protein	NA	A0A1B0RXA0	Streptococcus_phage	59.0	3.0e-160
AUZ72931.1|128853_129558_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AUZ72932.1|129734_130499_-|transposase	IS6 family transposase IS6100	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
AUZ72933.1|130564_130744_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ72934.1|130673_131513_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
AUZ72935.1|131506_131854_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
AUZ72936.1|132010_132643_-	type B-3 chloramphenicol O-acetyltransferase CatB3	NA	A0A2R8FE91	Brazilian_cedratvirus	41.2	4.1e-26
AUZ73013.1|132725_133259_-	aminoglycoside nucleotidyltransferase ANT(2'')-Ia	NA	NA	NA	NA	NA
AUZ72937.1|133404_134418_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
AUZ72938.1|134356_134638_+|transposase	transposase	transposase	NA	NA	NA	NA
134419:134478	attL	GGCAGCGCAAGTCAATCCTGGCGGATTCACTACCCCTGCGCGAAGGCCATCGGTGCCGCA	NA	NA	NA	NA
AUZ72939.1|135020_135590_-	trimethoprim-resistant dihydrofolate reductase DfrA19	NA	A0A1V0SD48	Indivirus	27.2	3.5e-08
AUZ72940.1|135589_136090_-	hypothetical protein	NA	A0A1V0SB21	Catovirus	31.7	3.3e-10
AUZ72941.1|136355_137897_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AUZ72942.1|138301_139141_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
AUZ72943.1|139340_139997_-	quinolone resistance pentapeptide repeat protein QnrA1	NA	NA	NA	NA	NA
AUZ72944.1|140329_141871_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AUZ72945.1|142275_143115_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
AUZ72946.1|143108_143456_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
AUZ72947.1|143385_143667_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ72948.1|143645_144278_-	type B-2 chloramphenicol O-acetyltransferase CatB11	NA	M1HKK6	Paramecium_bursaria_Chlorella_virus	43.0	7.1e-26
AUZ72949.1|144893_146243_+	group II intron reverse transcriptase/maturase	NA	H7BV81	unidentified_phage	28.3	3.3e-12
AUZ72950.1|146349_147609_-	chloramphenicol efflux MFS transporter	NA	S4TR35	Salmonella_phage	31.7	4.8e-26
AUZ73014.1|147870_148662_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
AUZ73015.1|148779_149646_-	PSE family carbenicillin-hydrolyzing class A beta-lactamase CARB-2	NA	A0A077SL40	Escherichia_phage	44.1	4.8e-57
AUZ72951.1|149851_150865_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
AUZ72952.1|150809_151133_+|transposase	transposase	transposase	NA	NA	NA	NA
150866:151067	attR	GGCAGCGCAAGTCAATCCTGGCGGATTCACTACCCCTGCGCGAAGGCCATCGGTGCCGCATCGAACGGCCGGTTGCGGAAAGTCCTCCCTGCGTCCGCTGATGGCCGGCAGCAGCCCGTCGTTGCCTGATGGATCCAACCCCTCCGCTGCTATAGTGCAGTCGGCTTCTGACGTTCAGTGCAGCCGTCTTCTGAAAACGACA	NA	NA	NA	NA
AUZ72953.1|151170_151728_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	81.3	5.8e-48
AUZ72954.1|151730_154703_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.1	0.0e+00
AUZ72955.1|154781_155786_+|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
>prophage 1
CP026234	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence	280328	0	15500	280328		Salmonella_phage(75.0%)	25	NA	NA
AUZ73309.1|429_741_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73018.1|749_1085_+	PerC family transcriptional regulator	NA	NA	NA	NA	NA
AUZ73310.1|1196_1394_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73019.1|1468_1930_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73020.1|2020_2422_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73021.1|2621_3506_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73022.1|3585_4113_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73023.1|4121_4424_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73024.1|4436_4889_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73025.1|4971_5502_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73026.1|5824_6382_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
AUZ73027.1|6653_6851_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73028.1|7068_7749_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73029.1|8108_8471_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73030.1|8589_9003_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73311.1|9188_9392_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73031.1|9381_9726_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73032.1|9703_10039_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73312.1|10237_11395_+	DNA polymerase III subunit beta	NA	R9TRR6	Rhizobium_phage	23.5	1.2e-15
AUZ73033.1|11545_12367_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	48.9	3.4e-65
AUZ73034.1|12363_12594_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73035.1|12580_13564_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	46.5	1.1e-73
AUZ73036.1|13575_14454_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73313.1|14567_15053_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73037.1|15071_15500_+	HNH endonuclease	NA	C6ZR29	Salmonella_phage	75.7	5.8e-56
>prophage 2
CP026234	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence	280328	18555	53087	280328	transposase,integrase	Stx2-converting_phage(30.0%)	36	17483:17496	50356:50369
17483:17496	attL	TGGAATACAACACA	NA	NA	NA	NA
AUZ73040.1|18555_19524_+|transposase	IS5-like element IS903B family transposase	transposase	A0A1B0VFY5	Salmonella_phage	99.7	2.1e-186
AUZ73041.1|20266_21022_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73042.1|21036_21459_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73043.1|21469_22075_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73044.1|22399_23116_+	FCD domain-containing protein	NA	NA	NA	NA	NA
AUZ73045.1|23142_23529_-	plasmid stability protein	NA	NA	NA	NA	NA
AUZ73315.1|23542_24505_-	plasmid stabilization protein	NA	A0A222YXF2	Escherichia_phage	41.1	9.6e-59
AUZ73046.1|24937_25168_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73047.1|25440_26373_-	hypothetical protein	NA	A0A223LHZ3	Pseudoalteromonas_phage	30.8	1.9e-11
AUZ73048.1|27155_27515_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73049.1|27531_27867_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73050.1|27863_28268_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73051.1|28633_29440_-	SecC motif-containing protein	NA	NA	NA	NA	NA
AUZ73052.1|29457_29898_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73053.1|30050_31412_-	FRG domain-containing protein	NA	NA	NA	NA	NA
AUZ73054.1|31425_32229_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73316.1|32287_33634_-|transposase	ISNCY family transposase ISLad2	transposase	NA	NA	NA	NA
AUZ73317.1|33861_34494_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73055.1|34522_35926_-|transposase	ISNCY family transposase ISKpn21	transposase	NA	NA	NA	NA
AUZ73056.1|36141_36456_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73318.1|36742_37018_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73057.1|37031_37457_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73058.1|38515_39667_-|transposase	IS30 family transposase IS30	transposase	W5R8L2	Staphylococcus_phage	35.6	2.0e-42
AUZ73059.1|39623_39980_-|transposase	IS3 family transposase	transposase	U5P4I9	Shigella_phage	91.2	1.7e-32
AUZ73060.1|40448_40955_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73061.1|41112_41514_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73062.1|41626_42817_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73063.1|42852_43041_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73064.1|43192_44650_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
AUZ73065.1|46756_47140_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	36.3	4.1e-13
AUZ73066.1|47136_47484_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	95.7	2.7e-59
AUZ73067.1|47533_49069_+|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	87.7	2.0e-260
AUZ73068.1|49754_50432_+	hypothetical protein	NA	NA	NA	NA	NA
50356:50369	attR	TGGAATACAACACA	NA	NA	NA	NA
AUZ73069.1|50431_50869_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73070.1|50865_52371_+	hypothetical protein	NA	A0A0K2FLP8	Brevibacillus_phage	25.3	4.7e-20
AUZ73071.1|52382_53087_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
>prophage 3
CP026234	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence	280328	58310	65986	280328	transposase	Salmonella_phage(80.0%)	7	NA	NA
AUZ73080.1|58310_59279_-|transposase	IS5-like element IS903B family transposase	transposase	A0A1B0VFY5	Salmonella_phage	99.7	2.1e-186
AUZ73081.1|59427_60294_-	repA protein	NA	J9Q7H0	Salmonella_phage	37.2	8.4e-46
AUZ73082.1|60866_61115_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73319.1|62076_63159_+	RepB family plasmid replication initiator protein	NA	J9Q7H0	Salmonella_phage	56.5	1.1e-79
AUZ73083.1|63213_63483_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73084.1|64687_65407_-	HNH endonuclease	NA	G0X580	Salmonella_phage	39.5	2.2e-07
AUZ73085.1|65560_65986_-	hypothetical protein	NA	A0A0K1YBA5	Cronobacter_phage	42.8	1.6e-26
>prophage 4
CP026234	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence	280328	72230	74070	280328		Salmonella_phage(50.0%)	3	NA	NA
AUZ73093.1|72230_72476_-	hypothetical protein	NA	S4TRP7	Salmonella_phage	44.4	2.8e-07
AUZ73094.1|72524_73184_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73095.1|73245_74070_-	hypothetical protein	NA	A6N3G8	Burkholderia_virus	61.1	1.9e-18
>prophage 5
CP026234	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence	280328	79098	88538	280328		Escherichia_phage(50.0%)	11	NA	NA
AUZ73103.1|79098_80517_-	replicative DNA helicase	NA	O80281	Escherichia_phage	73.6	4.3e-188
AUZ73104.1|80525_80894_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73105.1|80890_81412_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73106.1|81585_82761_-	hypothetical protein	NA	A0A088FQX6	Escherichia_phage	31.3	6.5e-17
AUZ73107.1|82919_83606_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73108.1|83626_84376_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73109.1|84377_84695_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73110.1|84974_85199_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73111.1|85336_87037_-	ATPase	NA	A0A172JHZ0	Bacillus_phage	36.7	4.6e-96
AUZ73112.1|87008_87410_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73113.1|87533_88538_-	peptide transporter	NA	A0A1B0V750	Salmonella_phage	27.2	3.0e-18
>prophage 6
CP026234	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence	280328	92417	93260	280328		Salmonella_phage(100.0%)	1	NA	NA
AUZ73118.1|92417_93260_-	HNH endonuclease	NA	G0X580	Salmonella_phage	39.5	1.8e-16
>prophage 7
CP026234	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence	280328	102456	103074	280328		Escherichia_phage(100.0%)	1	NA	NA
AUZ73134.1|102456_103074_-	hypothetical protein	NA	A0A076G6Q2	Escherichia_phage	53.4	4.1e-63
>prophage 8
CP026234	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence	280328	108536	117176	280328		Escherichia_phage(25.0%)	15	NA	NA
AUZ73140.1|108536_108734_-	restriction alleviation protein, Lar family	NA	A0A0U2QQP4	Escherichia_phage	48.4	2.6e-11
AUZ73141.1|108756_109452_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73142.1|109582_109774_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73143.1|109955_110351_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73144.1|110623_111046_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73145.1|111133_111454_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73146.1|111474_113547_-	ATP-dependent DNA helicase DinG	NA	A0A127AW80	Bacillus_phage	24.4	1.7e-44
AUZ73147.1|113641_113935_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73322.1|114016_114349_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73148.1|114407_114680_-	hypothetical protein	NA	A0A192YCJ5	Morganella_phage	37.2	1.5e-09
AUZ73149.1|114794_115070_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73150.1|115144_115621_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73151.1|115656_116115_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73152.1|116223_116490_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73153.1|116582_117176_-	hypothetical protein	NA	J9Q753	Salmonella_phage	34.5	1.4e-07
>prophage 9
CP026234	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence	280328	133196	226736	280328	transposase	Escherichia_phage(20.0%)	85	NA	NA
AUZ73172.1|133196_134165_+|transposase	IS5-like element IS903B family transposase	transposase	A0A1B0VFY5	Salmonella_phage	99.7	2.1e-186
AUZ73173.1|135218_135983_-	DsbC family protein	NA	NA	NA	NA	NA
AUZ73174.1|136163_137762_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73175.1|137855_138422_-	type IV conjugative transfer system protein TraV	NA	NA	NA	NA	NA
AUZ73176.1|138418_139816_-	conjugal transfer protein TrbI	NA	NA	NA	NA	NA
AUZ73324.1|139820_140858_-	TraK protein	NA	NA	NA	NA	NA
AUZ73177.1|141098_141725_-	traE family protein	NA	NA	NA	NA	NA
AUZ73178.1|141721_142006_-	type IV conjugative transfer system protein TraL	NA	NA	NA	NA	NA
AUZ73179.1|142098_143067_-|transposase	IS5-like element IS903B family transposase	transposase	A0A1B0VFY5	Salmonella_phage	99.7	2.1e-186
AUZ73180.1|143121_143940_-	disulfide bond formation protein DsbA	NA	NA	NA	NA	NA
AUZ73181.1|143936_144230_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73182.1|144314_144965_-	DUF4400 domain-containing protein	NA	NA	NA	NA	NA
AUZ73183.1|144949_145336_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73184.1|145338_147315_-	DUF87 domain-containing protein	NA	NA	NA	NA	NA
AUZ73185.1|147307_150010_-	DNA helicase	NA	NA	NA	NA	NA
AUZ73186.1|150159_150729_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73187.1|150646_151651_+	thioredoxin	NA	NA	NA	NA	NA
AUZ73188.1|151690_153166_-	helicase	NA	A0A1S5R1M3	Pseudomonas_phage	32.6	6.0e-44
AUZ73189.1|153341_153629_+	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
AUZ73190.1|153677_154013_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73325.1|154292_154847_+	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	32.7	2.5e-19
AUZ73191.1|154882_155092_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73192.1|155633_156962_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73326.1|157194_158274_-	topoisomerase	NA	A0A1P8CWV0	Bacillus_phage	23.8	9.0e-05
AUZ73193.1|158285_158654_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73194.1|158733_159042_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73195.1|159038_159674_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73196.1|159680_160409_-	signal peptidase I	NA	NA	NA	NA	NA
AUZ73197.1|160413_160830_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73327.1|161120_161771_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73198.1|161777_162893_+	tellurium resistance protein	NA	NA	NA	NA	NA
AUZ73199.1|162916_163891_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73200.1|164697_165823_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.8	1.4e-48
AUZ73201.1|166066_166771_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	2.6e-138
AUZ73202.1|166829_167081_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73203.1|167194_168340_+	ABC transporter permease	NA	NA	NA	NA	NA
AUZ73328.1|168336_169137_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	27.7	1.8e-10
AUZ73204.1|169138_170077_+	MCE family protein	NA	NA	NA	NA	NA
AUZ73205.1|170076_170718_+	ABC transporter	NA	NA	NA	NA	NA
AUZ73206.1|174431_175136_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AUZ73329.1|175160_178139_+|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	64.1	0.0e+00
AUZ73207.1|178323_179346_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUZ73208.1|179893_180172_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73209.1|180392_180722_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A088CBP5	Shigella_phage	44.2	2.4e-09
AUZ73210.1|180702_180984_+	XRE family transcriptional regulator	NA	A0A2I6TC97	Escherichia_phage	38.0	1.3e-08
AUZ73211.1|181261_182242_+|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	98.8	6.8e-185
AUZ73212.1|182361_183066_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	2.6e-138
AUZ73213.1|183392_183893_+	ferritin	NA	NA	NA	NA	NA
AUZ73214.1|184045_184180_+	ABC transporter	NA	NA	NA	NA	NA
AUZ73215.1|184213_184918_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	2.6e-138
AUZ73216.1|185002_185560_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	81.3	3.4e-48
AUZ73217.1|185689_185902_-	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
AUZ73330.1|185864_185984_+	mercury resistance protein	NA	NA	NA	NA	NA
AUZ73218.1|185967_186204_-	mercury resistance protein	NA	NA	NA	NA	NA
AUZ73219.1|186200_186566_-	transcriptional regulator	NA	NA	NA	NA	NA
AUZ73220.1|186583_188269_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.8e-39
AUZ73221.1|188307_188733_-	mercury transport protein MerC	NA	NA	NA	NA	NA
AUZ73222.1|188760_189036_-	mercuric transporter periplasmic component	NA	NA	NA	NA	NA
AUZ73223.1|189051_189417_-	mercuric transport protein	NA	NA	NA	NA	NA
AUZ73224.1|189488_189944_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUZ73225.1|189992_190568_+	phospholipid:lipid A palmitoyltransferase	NA	NA	NA	NA	NA
AUZ73226.1|190575_191541_-	acyltransferase	NA	NA	NA	NA	NA
AUZ73227.1|191691_194748_-	AcrB/AcrD/AcrF family protein	NA	S5VTK5	Leptospira_phage	22.0	2.5e-52
AUZ73228.1|194747_195833_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUZ73229.1|196357_196789_+	universal stress protein UspG	NA	A0A1W6JNV4	Morganella_phage	44.1	2.0e-24
AUZ73230.1|196839_199527_+	carbonate dehydratase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	27.5	1.2e-71
AUZ73231.1|199916_200522_-	DNA resolvase	NA	A0A1S5Y2X8	uncultured_archaeal_virus	35.3	5.5e-20
AUZ73232.1|200616_203514_+|transposase	Tn3-like element Tn5403 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	37.8	5.5e-182
AUZ73233.1|204043_204244_-	glycogen synthesis protein GlgS	NA	NA	NA	NA	NA
AUZ73234.1|204544_205513_-|transposase	IS5-like element IS903B family transposase	transposase	A0A1B0VFY5	Salmonella_phage	98.8	5.1e-185
AUZ73235.1|205885_208078_+	1,4-alpha-glucan branching enzyme	NA	NA	NA	NA	NA
AUZ73236.1|208207_209491_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
AUZ73237.1|209580_211014_+	glycogen synthase GlgA	NA	NA	NA	NA	NA
AUZ73238.1|211032_213480_+	glycogen phosphorylase	NA	A0A140XAG6	Dickeya_phage	70.5	9.4e-26
AUZ73239.1|213593_215237_+	alpha-D-glucose phosphate-specific phosphoglucomutase	NA	A0A1X9I671	Streptococcus_phage	25.0	1.5e-22
AUZ73240.1|215361_215928_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AUZ73241.1|216262_216541_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73242.1|218239_218593_+	transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	50.0	4.1e-23
AUZ73243.1|218640_219003_+	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA	NA
AUZ73244.1|219020_220772_+	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
AUZ73245.1|220820_222110_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4J144	uncultured_Caudovirales_phage	73.3	4.8e-170
AUZ73246.1|222122_222548_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	70.7	1.2e-50
AUZ73247.1|222578_222983_-	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
AUZ73248.1|222991_223564_-	recombinase	NA	Q1MVP4	Enterobacteria_phage	89.0	2.0e-83
AUZ73249.1|223727_226736_+|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	64.5	0.0e+00
>prophage 10
CP026234	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence	280328	243173	248608	280328	transposase	Salmonella_phage(50.0%)	6	NA	NA
AUZ73267.1|243173_246140_-|transposase	Tn3-like element ISPa38 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.1	0.0e+00
AUZ73268.1|246298_246589_+	nucleotidyltransferase	NA	NA	NA	NA	NA
AUZ73269.1|246585_246987_+	DUF86 domain-containing protein	NA	NA	NA	NA	NA
AUZ73270.1|246976_247333_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AUZ73271.1|247587_247902_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73272.1|248074_248608_-	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	33.9	5.8e-21
>prophage 11
CP026234	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence	280328	252967	257634	280328		Salmonella_phage(66.67%)	7	NA	NA
AUZ73279.1|252967_254653_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.8e-39
AUZ73280.1|254670_255036_+	transcriptional regulator	NA	NA	NA	NA	NA
AUZ73281.1|255032_255269_+	mercury resistance protein	NA	NA	NA	NA	NA
AUZ73333.1|255252_255372_-	mercury resistance protein	NA	NA	NA	NA	NA
AUZ73282.1|255334_255547_+	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
AUZ73283.1|255676_256234_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	81.3	3.4e-48
AUZ73284.1|256236_257634_+	DUF4158 domain-containing protein	NA	A0A1B0V7H9	Salmonella_phage	32.1	1.3e-117
>prophage 12
CP026234	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence	280328	260645	261122	280328		Salmonella_phage(100.0%)	1	NA	NA
AUZ73289.1|260645_261122_+	DNA starvation/stationary phase protection protein	NA	G0X506	Salmonella_phage	28.7	6.7e-05
>prophage 13
CP026234	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence	280328	264667	276015	280328	transposase	Morganella_phage(40.0%)	12	NA	NA
AUZ73292.1|264667_267706_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	53.5	5.0e-295
AUZ73293.1|267729_268752_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUZ73294.1|268852_269125_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73295.1|269108_269612_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73334.1|269865_270282_+	translesion error-prone DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	54.7	1.0e-36
AUZ73296.1|270281_271547_+	translesion error-prone DNA polymerase V subunit UmuC	NA	A0A1W6JNT0	Morganella_phage	60.6	9.8e-144
AUZ73297.1|271696_272587_+	DNA replication protein	NA	NA	NA	NA	NA
AUZ73298.1|272701_273280_+	hypothetical protein	NA	NA	NA	NA	NA
AUZ73299.1|273568_273826_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	65.7	8.3e-18
AUZ73300.1|273996_274488_+	N-acetyltransferase	NA	NA	NA	NA	NA
AUZ73301.1|274573_275065_-	hypothetical protein	NA	NA	NA	NA	NA
AUZ73302.1|275613_276015_+	DNA-binding protein	NA	Q1MVE8	Enterobacteria_phage	69.9	3.5e-47
