The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026592	Clostridioides difficile strain CD-10-00484 chromosome, complete genome	4119484	285754	301940	4119484		Synechococcus_phage(23.08%)	14	NA	NA
AVB39742.1|285754_286267_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	2.3e-83
AVB39743.1|286716_287193_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AVB39744.1|287198_287897_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AVB39745.1|287908_289276_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AVB39746.1|289269_290346_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
AVB39747.1|290339_290933_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
AVB39748.1|290925_292458_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AVB39749.1|292468_293719_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AVB39750.1|293743_297550_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.1	3.0e-31
AVB39751.1|297755_298628_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	3.8e-14
AVB39752.1|298736_299618_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	61.9	8.2e-97
AVB39753.1|299654_300212_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.3e-47
AVB39754.1|300249_301233_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.9	9.2e-81
AVB39755.1|301271_301940_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	47.7	4.1e-24
>prophage 2
CP026592	Clostridioides difficile strain CD-10-00484 chromosome, complete genome	4119484	466697	473326	4119484	transposase,integrase	Clostridium_phage(33.33%)	7	458035:458050	479107:479122
458035:458050	attL	TAGCTAAATTCCAAAA	NA	NA	NA	NA
AVB39911.1|466697_468053_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	34.4	8.8e-58
AVB39912.1|468134_468350_-|integrase	integrase	integrase	A0A0A8WIE1	Clostridium_phage	68.1	7.0e-10
AVB39913.1|468575_469610_+	YHYH domain-containing protein	NA	NA	NA	NA	NA
AVB39914.1|469696_469900_+	DUF4236 domain-containing protein	NA	A0A0A8WIL0	Clostridium_phage	74.1	1.5e-14
AVB39915.1|470070_471231_+	cell wall-binding protein Cwp27	NA	A0A2R2ZGK6	Clostridioides_phage	47.9	5.0e-70
AVB39916.1|471761_472661_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	60.7	2.7e-79
AVB39917.1|472654_473326_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	43.0	1.4e-43
479107:479122	attR	TTTTGGAATTTAGCTA	NA	NA	NA	NA
>prophage 3
CP026592	Clostridioides difficile strain CD-10-00484 chromosome, complete genome	4119484	588812	659527	4119484	protease,coat,tRNA,transposase	Streptococcus_phage(33.33%)	56	NA	NA
AVB40008.1|588812_589529_+|protease	protease PrsW	protease	NA	NA	NA	NA
AVB40009.1|589607_590918_+	methylase	NA	NA	NA	NA	NA
AVB40010.1|591017_591554_+	signal peptidase I	NA	NA	NA	NA	NA
AVB40011.1|591719_592256_+	signal peptidase I	NA	NA	NA	NA	NA
AVB40012.1|592265_593021_+	endonuclease	NA	NA	NA	NA	NA
AVB40013.1|593094_594762_+	nucleoside kinase	NA	NA	NA	NA	NA
AVB40014.1|595326_596256_+	glutaminase	NA	NA	NA	NA	NA
AVB40015.1|596353_596917_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AVB40016.1|597404_598241_+	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.5	2.1e-30
AVB40017.1|598492_599488_+	aldo/keto reductase	NA	NA	NA	NA	NA
AVB40018.1|599744_600149_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
AVB40019.1|600309_600501_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40020.1|601148_602063_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
AVB40021.1|602168_604406_+	ATP-binding protein	NA	A0A2H4UU76	Bodo_saltans_virus	32.7	9.9e-06
AVB43054.1|605037_605655_+	endonuclease III	NA	NA	NA	NA	NA
AVB40022.1|605848_606319_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AVB40023.1|606354_607203_+	DegV family protein	NA	NA	NA	NA	NA
AVB40024.1|607575_608580_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVB40025.1|608704_609817_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVB40026.1|610239_611001_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40027.1|611003_611822_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40028.1|612001_612604_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AVB40029.1|613466_615386_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
AVB43055.1|616815_616965_-	hypothetical protein	NA	NA	NA	NA	NA
AVB40030.1|617321_618440_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	2.2e-110
AVB40031.1|619437_620475_-	hypothetical protein	NA	NA	NA	NA	NA
AVB40032.1|620467_621154_-	hypothetical protein	NA	NA	NA	NA	NA
AVB40033.1|621165_621486_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVB40034.1|621846_623187_+	ATP-binding protein	NA	X5JAC0	Clostridium_phage	38.8	2.4e-79
AVB40035.1|623864_624434_-	hydrolase	NA	NA	NA	NA	NA
AVB40036.1|624594_625845_-	MFS transporter	NA	NA	NA	NA	NA
AVB40037.1|626136_626724_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVB40038.1|627045_628506_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AVB40039.1|628879_629485_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVB40040.1|629487_632055_+	pyruvate, phosphate dikinase	NA	A0A1V0SGR7	Hokovirus	39.6	4.1e-48
AVB40041.1|632047_632212_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40042.1|633320_633596_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40043.1|633615_633903_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40044.1|635457_636567_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	3.1e-109
AVB40045.1|636631_638755_+	ATP-binding protein	NA	NA	NA	NA	NA
AVB40046.1|638769_643980_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40047.1|644204_646304_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.8	2.2e-68
AVB40048.1|646346_646742_-	hypothetical protein	NA	NA	NA	NA	NA
AVB40049.1|647802_647991_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40050.1|648175_648616_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
AVB40051.1|648951_650265_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	41.0	1.6e-93
AVB40052.1|650282_650819_+	chromosome partitioning protein ParB	NA	A0A220GKT8	Streptococcus_phage	70.3	4.2e-64
AVB40053.1|651337_651559_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
AVB40054.1|651558_651822_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
AVB40055.1|651883_652456_+	rubrerythrin family protein	NA	NA	NA	NA	NA
AVB40056.1|653273_653807_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	50.0	7.0e-35
AVB40057.1|654031_654211_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AVB43056.1|654817_655066_-	hypothetical protein	NA	NA	NA	NA	NA
AVB40058.1|655913_656327_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
AVB40059.1|656401_656911_+	GrpB family protein	NA	NA	NA	NA	NA
AVB40060.1|658417_659527_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	54.3	6.6e-112
>prophage 4
CP026592	Clostridioides difficile strain CD-10-00484 chromosome, complete genome	4119484	1402688	1465587	4119484	portal,protease,tail,tRNA,plate	Clostridium_phage(46.15%)	61	NA	NA
AVB40693.1|1402688_1403423_+|protease	Clp protease	protease	NA	NA	NA	NA
AVB40694.1|1403545_1405957_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
AVB40695.1|1405959_1407018_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
AVB40696.1|1407011_1408346_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AVB40697.1|1408332_1408875_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AVB40698.1|1409162_1410209_+	DNA recombination/repair protein RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
AVB43074.1|1410384_1411926_+	ribonuclease Y	NA	NA	NA	NA	NA
AVB40699.1|1412560_1414342_+	DNA helicase	NA	NA	NA	NA	NA
AVB40700.1|1414423_1414954_-	signal peptidase I	NA	NA	NA	NA	NA
AVB40701.1|1414993_1415818_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
AVB40702.1|1416074_1416983_+	recombinase	NA	NA	NA	NA	NA
AVB40703.1|1417126_1418572_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
AVB40704.1|1418882_1419335_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVB40705.1|1419747_1421325_+	PTS maltose transporter subunit IICB	NA	NA	NA	NA	NA
AVB40706.1|1421483_1422236_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AVB43075.1|1422374_1423715_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
AVB40707.1|1423826_1425023_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AVB40708.1|1425407_1426358_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AVB40709.1|1426518_1427271_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
AVB40710.1|1427362_1428139_-	exonuclease	NA	NA	NA	NA	NA
AVB40711.1|1428453_1430352_+	glutamine synthetase	NA	NA	NA	NA	NA
AVB43076.1|1430479_1431601_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
AVB40712.1|1431799_1432132_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVB40713.1|1432118_1433177_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AVB40714.1|1433169_1434240_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40715.1|1434341_1434878_+	lipoprotein	NA	NA	NA	NA	NA
AVB40716.1|1434994_1435702_+	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.0	3.6e-55
AVB40717.1|1435703_1436420_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
AVB40718.1|1436421_1437180_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
AVB40719.1|1437323_1438712_+	sensor histidine kinase	NA	NA	NA	NA	NA
AVB40720.1|1438787_1439609_-	pyridoxamine kinase	NA	NA	NA	NA	NA
AVB40721.1|1439859_1441014_+	amidase domain-containing protein	NA	NA	NA	NA	NA
AVB40722.1|1441196_1441397_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AVB40723.1|1441817_1442246_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AVB40724.1|1442388_1443144_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AVB40725.1|1443264_1443681_-	hypothetical protein	NA	NA	NA	NA	NA
AVB40726.1|1443844_1444351_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AVB40727.1|1444432_1444753_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AVB40728.1|1444921_1445119_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVB40729.1|1445223_1445664_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
AVB40730.1|1445912_1446356_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	7.6e-19
AVB40731.1|1446360_1447425_+|tail	phage tail sheath protein	tail	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
AVB40732.1|1447438_1447867_+|portal	phage portal protein	portal	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AVB40733.1|1447980_1448427_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
AVB40734.1|1448453_1448621_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40735.1|1448620_1451074_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	61.0	6.1e-17
AVB40736.1|1451073_1451496_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	70.4	2.2e-52
AVB40737.1|1451777_1453307_+	cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
AVB40738.1|1453322_1453649_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
AVB40739.1|1453648_1454077_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
AVB40740.1|1454069_1455122_+|plate	baseplate protein J	plate	A0A0A8WFP3	Clostridium_phage	71.3	9.3e-140
AVB40741.1|1455118_1455817_+	hypothetical protein	NA	A0A090D815	Clostridium_phage	56.9	3.3e-48
AVB40742.1|1455817_1456804_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
AVB40743.1|1456825_1462003_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	28.3	8.2e-88
AVB40744.1|1462019_1462373_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	4.2e-12
AVB40745.1|1462635_1462896_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AVB40746.1|1463120_1463576_-	hypothetical protein	NA	NA	NA	NA	NA
AVB40747.1|1463803_1464223_-	XRE family transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AVB40748.1|1464521_1464731_+	XRE family transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AVB40749.1|1464750_1464972_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40750.1|1465188_1465587_-	transcriptional regulator	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 5
CP026592	Clostridioides difficile strain CD-10-00484 chromosome, complete genome	4119484	1548279	1556824	4119484		Pandoravirus(33.33%)	10	NA	NA
AVB40818.1|1548279_1548864_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	4.2e-57
AVB40819.1|1548856_1550215_+	aminodeoxychorismate synthase, component I	NA	S4VNU7	Pandoravirus	41.2	3.0e-37
AVB40820.1|1550204_1550948_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AVB40821.1|1550981_1551683_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40822.1|1551708_1552281_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AVB40823.1|1552334_1553138_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	28.6	2.4e-23
AVB43079.1|1553148_1553514_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AVB40824.1|1553506_1554013_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AVB40825.1|1553993_1554779_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.0e-13
AVB40826.1|1555033_1556824_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.8	5.6e-52
>prophage 6
CP026592	Clostridioides difficile strain CD-10-00484 chromosome, complete genome	4119484	1684238	1739369	4119484	portal,holin,integrase,terminase,capsid,tail,head	Clostridium_phage(78.18%)	68	1678242:1678257	1687461:1687476
1678242:1678257	attL	ATATAAAAGAGCAGAT	NA	NA	NA	NA
AVB40938.1|1684238_1685369_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
AVB40939.1|1685447_1686155_-	DNA-binding protein	NA	NA	NA	NA	NA
AVB40940.1|1686167_1687037_-	protein kinase	NA	NA	NA	NA	NA
AVB40941.1|1687656_1688163_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
1687461:1687476	attR	ATATAAAAGAGCAGAT	NA	NA	NA	NA
AVB40942.1|1688238_1688787_-	transcriptional regulator	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
AVB40943.1|1688798_1689140_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
AVB40944.1|1689316_1689520_+	transcriptional regulator	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
AVB40945.1|1689567_1690377_+	phage antirepressor protein	NA	A0A0A8WIE3	Clostridium_phage	97.4	1.0e-146
AVB40946.1|1690423_1690633_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40947.1|1690642_1691017_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
AVB40948.1|1691092_1691290_+	XRE family transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	2.9e-26
AVB40949.1|1691320_1691713_+	DNA-binding protein	NA	A0A0A8WHS2	Clostridium_phage	93.0	9.6e-58
AVB40950.1|1691913_1692351_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40951.1|1692362_1693529_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
AVB40952.1|1693543_1693879_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40953.1|1693931_1694504_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
AVB40954.1|1694526_1695099_+	DUF2815 domain-containing protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
AVB40955.1|1695098_1697057_+	DNA polymerase I	NA	A0A0A7RTL3	Clostridium_phage	69.1	7.8e-265
AVB40956.1|1697068_1699486_+	hypothetical protein	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
AVB40957.1|1699767_1700094_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
AVB40958.1|1700042_1701413_+	ATP-dependent helicase	NA	A0A1S7FYY5	Listeria_phage	60.0	8.4e-157
AVB40959.1|1701566_1702046_+	hypothetical protein	NA	I2E8Y5	Clostridium_phage	51.0	4.4e-36
AVB40960.1|1703072_1704047_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40961.1|1704102_1704303_-	hypothetical protein	NA	NA	NA	NA	NA
AVB40962.1|1704283_1704577_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40963.1|1704646_1705339_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	97.0	7.0e-120
AVB43085.1|1705328_1706570_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	1.1e-243
AVB40964.1|1706575_1708018_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	97.7	3.0e-274
AVB40965.1|1708007_1709543_+|head	phage head morphogenesis protein	head	X5JAI9	Clostridium_phage	71.9	2.5e-194
AVB40966.1|1709544_1709793_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40967.1|1709860_1710424_+	scaffolding protein	NA	A0A0A8WFU8	Clostridium_phage	93.6	6.0e-85
AVB40968.1|1710435_1711326_+|capsid	capsid protein	capsid	X5J9Z5	Clostridium_phage	99.3	1.4e-165
AVB40969.1|1711344_1711578_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	93.5	4.6e-31
AVB40970.1|1711587_1711989_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
AVB40971.1|1711982_1712330_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
AVB40972.1|1712329_1712620_+	hypothetical protein	NA	A0A0A8WFV8	Clostridium_phage	96.7	4.1e-45
AVB40973.1|1712729_1713536_+	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
AVB40974.1|1713884_1714322_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
AVB40975.1|1714314_1714491_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	93.1	1.1e-21
AVB40976.1|1714491_1715802_+|tail	phage tail protein	tail	X5JAJ1	Clostridium_phage	92.7	8.1e-234
AVB40977.1|1715818_1716289_+	hypothetical protein	NA	A0A0A8WJ62	Clostridium_phage	81.3	1.3e-69
AVB40978.1|1716347_1717175_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	48.3	1.8e-45
AVB40979.1|1717246_1717687_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
AVB40980.1|1717686_1717881_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40981.1|1718027_1718189_+	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
AVB40982.1|1719525_1719714_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	96.8	2.2e-23
AVB40983.1|1719832_1720699_+	phage repressor protein	NA	X5JAW1	Clostridium_phage	80.1	3.2e-130
AVB40984.1|1720751_1720886_+	hypothetical protein	NA	NA	NA	NA	NA
AVB40985.1|1721563_1722091_+	DUF4352 domain-containing protein	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
AVB40986.1|1722228_1722996_+	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	44.4	6.3e-45
AVB40987.1|1723061_1725434_+	hypothetical protein	NA	X5JAB7	Clostridium_phage	41.5	8.8e-146
AVB40988.1|1725450_1726140_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.8	2.0e-119
AVB40989.1|1726132_1728025_+	cell wall hydrolase	NA	A3QSB3	Clostridium_virus	94.8	0.0e+00
AVB40990.1|1728038_1728299_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	86.0	1.4e-33
AVB40991.1|1728303_1728723_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	95.7	1.3e-71
AVB40992.1|1728723_1729773_+|tail	phage tail protein	tail	A0A0A8WFK0	Clostridium_phage	94.8	1.0e-186
AVB40993.1|1729765_1730383_+	DUF2313 domain-containing protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
AVB40994.1|1730394_1731420_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	87.8	9.1e-140
AVB40995.1|1731436_1732963_+	hypothetical protein	NA	B6SBV0	Clostridium_virus	60.8	1.3e-89
AVB40996.1|1732977_1733271_+	hypothetical protein	NA	E2ELK3	Clostridium_phage	77.9	2.2e-38
AVB40997.1|1733270_1733453_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	95.0	5.5e-24
AVB40998.1|1733486_1734053_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	77.8	3.6e-37
AVB40999.1|1734083_1734374_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	95.8	6.9e-45
AVB41000.1|1734377_1734635_+|holin	holin	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
AVB41001.1|1734895_1735759_+	abortive infection bacteriophage resistance protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
AVB41002.1|1735837_1736650_+	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
AVB41003.1|1736743_1739143_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
AVB41004.1|1739183_1739369_-	PemI	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
>prophage 7
CP026592	Clostridioides difficile strain CD-10-00484 chromosome, complete genome	4119484	2597937	2625053	4119484	protease,coat,tRNA,transposase	Clostridium_phage(44.44%)	25	NA	NA
AVB41764.1|2597937_2598972_-|protease	protease	protease	NA	NA	NA	NA
AVB41765.1|2598964_2599339_-	transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	50.8	1.4e-29
AVB41766.1|2601088_2601676_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AVB41767.1|2601741_2602776_-|protease	protease	protease	NA	NA	NA	NA
AVB41768.1|2602768_2603143_-	transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	53.2	2.8e-30
AVB41769.1|2603784_2604267_-	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
AVB41770.1|2604558_2605263_-	hypothetical protein	NA	NA	NA	NA	NA
AVB41771.1|2605616_2606633_-	transglycosylase	NA	NA	NA	NA	NA
AVB41772.1|2606760_2607267_-	3'-5' exonuclease	NA	A0A0A7RWA3	Clostridium_phage	41.2	2.9e-22
AVB41773.1|2607425_2608094_-	hypothetical protein	NA	NA	NA	NA	NA
AVB41774.1|2608506_2609013_-	flavin reductase	NA	NA	NA	NA	NA
AVB41775.1|2609383_2610412_-	exonuclease	NA	NA	NA	NA	NA
AVB41776.1|2610459_2611320_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	32.4	2.9e-30
AVB41777.1|2611598_2611808_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
AVB41778.1|2611807_2612074_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
AVB41779.1|2612102_2612675_+	rubrerythrin family protein	NA	NA	NA	NA	NA
AVB41780.1|2612908_2614099_-	cell wall hydrolase	NA	A0A0K2SUC1	Clostridium_phage	50.7	1.7e-28
AVB41781.1|2614358_2614790_-	dUTP diphosphatase	NA	A0A1L2BX65	Bacteriophage	51.0	4.6e-37
AVB41782.1|2614902_2617131_+	type IA DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	29.0	1.1e-28
AVB41783.1|2617241_2617727_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVB41784.1|2617978_2619202_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVB41785.1|2619205_2622340_+	AcrB/AcrD/AcrF family protein	NA	S5VTK5	Leptospira_phage	26.8	1.6e-110
AVB41786.1|2622361_2623672_+	multidrug transporter	NA	NA	NA	NA	NA
AVB41787.1|2623881_2624709_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	35.9	5.2e-37
AVB41788.1|2624735_2625053_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 8
CP026592	Clostridioides difficile strain CD-10-00484 chromosome, complete genome	4119484	3056827	3065780	4119484		Catovirus(50.0%)	8	NA	NA
AVB42147.1|3056827_3058741_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
AVB42148.1|3058824_3059916_-	glycosyltransferase family 4 protein	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
AVB43111.1|3059921_3061217_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	43.6	3.7e-90
AVB42149.1|3061242_3061995_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
AVB42150.1|3062042_3062951_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AVB42151.1|3062972_3063722_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
AVB42152.1|3063750_3064941_-	glycerophosphotransferase	NA	NA	NA	NA	NA
AVB42153.1|3064940_3065780_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	5.3e-05
>prophage 9
CP026592	Clostridioides difficile strain CD-10-00484 chromosome, complete genome	4119484	3844958	3858790	4119484	portal,transposase	Clostridioides_phage(69.23%)	18	NA	NA
AVB42775.1|3844958_3846098_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	91.8	4.9e-195
AVB42776.1|3846430_3847006_+	hypothetical protein	NA	NA	NA	NA	NA
AVB42777.1|3847016_3847205_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	96.8	5.3e-22
AVB42778.1|3847399_3847957_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	97.8	4.1e-94
AVB42779.1|3848256_3849000_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	92.3	4.3e-131
AVB42780.1|3849453_3849996_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	95.0	8.3e-92
AVB42781.1|3850090_3851296_+|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	95.0	2.0e-210
AVB42782.1|3851273_3851441_+	hydrolase	NA	A0A0A8WIC2	Clostridium_phage	97.4	3.6e-14
AVB43135.1|3851511_3851694_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WJ04	Clostridium_phage	91.5	9.7e-21
AVB42783.1|3851824_3852268_-	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	82.6	4.3e-62
AVB42784.1|3852485_3852929_-	hypothetical protein	NA	NA	NA	NA	NA
AVB42785.1|3852950_3853268_-	hypothetical protein	NA	NA	NA	NA	NA
AVB43136.1|3853457_3854120_-	DUF4367 domain-containing protein	NA	A0A1V0DZZ4	Clostridioides_phage	76.2	4.4e-87
AVB42786.1|3854151_3854694_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1V0DZZ1	Clostridioides_phage	96.7	3.8e-89
AVB42787.1|3854933_3855116_-	hypothetical protein	NA	NA	NA	NA	NA
AVB42788.1|3855143_3855755_-	hypothetical protein	NA	NA	NA	NA	NA
AVB42789.1|3856231_3857446_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	7.9e-50
AVB42790.1|3857632_3858790_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.4e-17
>prophage 10
CP026592	Clostridioides difficile strain CD-10-00484 chromosome, complete genome	4119484	4030515	4045938	4119484		Streptococcus_phage(92.31%)	19	NA	NA
AVB42951.1|4030515_4030839_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	73.5	1.7e-39
AVB42952.1|4030853_4031237_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	6.3e-38
AVB42953.1|4031332_4031746_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
AVB42954.1|4031852_4032311_+	glyoxalase	NA	NA	NA	NA	NA
AVB42955.1|4032335_4032878_+	hypothetical protein	NA	NA	NA	NA	NA
AVB43141.1|4032934_4033441_+	hypothetical protein	NA	NA	NA	NA	NA
AVB42956.1|4033550_4034945_+	ATP-binding protein	NA	A0A1S5SFB5	Streptococcus_phage	66.8	1.3e-178
AVB43142.1|4035224_4036346_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.7	1.3e-134
AVB42957.1|4036352_4036487_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
AVB42958.1|4036487_4036709_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
AVB42959.1|4037028_4037667_+	chloramphenicol acetyltransferase CAT	NA	G3CFL0	Escherichia_phage	35.3	7.6e-36
AVB42960.1|4037743_4037932_+	hypothetical protein	NA	NA	NA	NA	NA
AVB42961.1|4037952_4038450_+	conjugal transfer protein	NA	A0A1S5SF25	Streptococcus_phage	41.2	1.3e-27
AVB42962.1|4038465_4038969_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	47.6	4.4e-39
AVB42963.1|4039081_4039471_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.8	8.1e-49
AVB42964.1|4039457_4041890_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
AVB42965.1|4041889_4044025_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.3e-177
AVB42966.1|4044021_4045029_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	67.3	6.4e-130
AVB42967.1|4045044_4045938_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	53.0	1.6e-79
