The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026595	Clostridioides difficile strain 12-00011 chromosome, complete genome	4119932	285644	301830	4119932		Synechococcus_phage(23.08%)	14	NA	NA
AVB52024.1|285644_286157_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	2.3e-83
AVB52025.1|286606_287083_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AVB52026.1|287088_287787_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AVB52027.1|287798_289166_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AVB52028.1|289159_290236_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
AVB52029.1|290229_290823_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
AVB52030.1|290815_292348_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AVB52031.1|292358_293609_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AVB52032.1|293633_297440_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.1	3.0e-31
AVB52033.1|297645_298518_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	3.8e-14
AVB52034.1|298626_299508_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	61.9	8.2e-97
AVB52035.1|299544_300102_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.3e-47
AVB52036.1|300139_301123_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.9	9.2e-81
AVB52037.1|301161_301830_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	47.7	4.1e-24
>prophage 2
CP026595	Clostridioides difficile strain 12-00011 chromosome, complete genome	4119932	466589	473218	4119932	transposase,integrase	Clostridium_phage(33.33%)	7	457927:457942	478999:479014
457927:457942	attL	TAGCTAAATTCCAAAA	NA	NA	NA	NA
AVB52191.1|466589_467945_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	34.4	8.8e-58
AVB52192.1|468026_468242_-|integrase	integrase	integrase	A0A0A8WIE1	Clostridium_phage	68.1	7.0e-10
AVB52193.1|468467_469502_+	YHYH domain-containing protein	NA	NA	NA	NA	NA
AVB52194.1|469588_469792_+	DUF4236 domain-containing protein	NA	A0A0A8WIL0	Clostridium_phage	74.1	1.5e-14
AVB52195.1|469962_471123_+	cell wall-binding protein Cwp27	NA	A0A2R2ZGK6	Clostridioides_phage	47.9	5.0e-70
AVB52196.1|471653_472553_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	60.7	2.7e-79
AVB52197.1|472546_473218_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	43.0	1.4e-43
478999:479014	attR	TTTTGGAATTTAGCTA	NA	NA	NA	NA
>prophage 3
CP026595	Clostridioides difficile strain 12-00011 chromosome, complete genome	4119932	588704	659482	4119932	protease,coat,transposase,tRNA	Streptococcus_phage(33.33%)	57	NA	NA
AVB52289.1|588704_589421_+|protease	protease PrsW	protease	NA	NA	NA	NA
AVB52290.1|589499_590810_+	methylase	NA	NA	NA	NA	NA
AVB52291.1|590909_591446_+	signal peptidase I	NA	NA	NA	NA	NA
AVB52292.1|591611_592148_+	signal peptidase I	NA	NA	NA	NA	NA
AVB52293.1|592157_592913_+	endonuclease	NA	NA	NA	NA	NA
AVB52294.1|592986_594654_+	nucleoside kinase	NA	NA	NA	NA	NA
AVB55334.1|594847_595054_-	hypothetical protein	NA	NA	NA	NA	NA
AVB52295.1|595281_596211_+	glutaminase	NA	NA	NA	NA	NA
AVB52296.1|596308_596872_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AVB52297.1|597359_598196_+	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.5	2.1e-30
AVB52298.1|598447_599443_+	aldo/keto reductase	NA	NA	NA	NA	NA
AVB52299.1|599699_600104_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
AVB52300.1|600264_600456_+	hypothetical protein	NA	NA	NA	NA	NA
AVB52301.1|601103_602018_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
AVB52302.1|602123_604361_+	ATP-binding protein	NA	A0A2H4UU76	Bodo_saltans_virus	32.7	9.9e-06
AVB55335.1|604992_605610_+	endonuclease III	NA	NA	NA	NA	NA
AVB52303.1|605803_606274_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AVB52304.1|606309_607158_+	DegV family protein	NA	NA	NA	NA	NA
AVB52305.1|607530_608535_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVB52306.1|608659_609772_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVB52307.1|610194_610956_+	hypothetical protein	NA	NA	NA	NA	NA
AVB52308.1|610958_611777_+	hypothetical protein	NA	NA	NA	NA	NA
AVB52309.1|611956_612559_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AVB52310.1|613421_615341_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
AVB55336.1|616770_616920_-	hypothetical protein	NA	NA	NA	NA	NA
AVB52311.1|617276_618395_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	2.2e-110
AVB52312.1|619392_620430_-	hypothetical protein	NA	NA	NA	NA	NA
AVB52313.1|620422_621109_-	hypothetical protein	NA	NA	NA	NA	NA
AVB52314.1|621120_621441_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVB52315.1|621801_623142_+	ATP-binding protein	NA	X5JAC0	Clostridium_phage	38.8	2.4e-79
AVB52316.1|623819_624389_-	hydrolase	NA	NA	NA	NA	NA
AVB52317.1|624549_625800_-	MFS transporter	NA	NA	NA	NA	NA
AVB52318.1|626091_626679_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVB52319.1|627000_628461_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AVB52320.1|628834_629440_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVB52321.1|629442_632010_+	pyruvate, phosphate dikinase	NA	A0A1V0SGR7	Hokovirus	39.6	4.1e-48
AVB52322.1|632002_632167_+	hypothetical protein	NA	NA	NA	NA	NA
AVB52323.1|633275_633551_+	hypothetical protein	NA	NA	NA	NA	NA
AVB52324.1|633570_633858_+	hypothetical protein	NA	NA	NA	NA	NA
AVB52325.1|635412_636522_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	3.1e-109
AVB52326.1|636586_638710_+	ATP-binding protein	NA	NA	NA	NA	NA
AVB52327.1|638724_643935_+	hypothetical protein	NA	NA	NA	NA	NA
AVB52328.1|644159_646259_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.8	2.2e-68
AVB52329.1|646301_646697_-	hypothetical protein	NA	NA	NA	NA	NA
AVB52330.1|647757_647946_+	hypothetical protein	NA	NA	NA	NA	NA
AVB52331.1|648130_648571_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
AVB52332.1|648906_650220_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	41.0	1.6e-93
AVB52333.1|650237_650774_+	chromosome partitioning protein ParB	NA	A0A220GKT8	Streptococcus_phage	70.3	4.2e-64
AVB52334.1|651292_651514_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
AVB52335.1|651513_651777_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
AVB52336.1|651838_652411_+	rubrerythrin family protein	NA	NA	NA	NA	NA
AVB52337.1|653228_653762_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	50.0	7.0e-35
AVB52338.1|653986_654166_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AVB55337.1|654772_655021_-	hypothetical protein	NA	NA	NA	NA	NA
AVB52339.1|655868_656282_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
AVB52340.1|656356_656866_+	GrpB family protein	NA	NA	NA	NA	NA
AVB52341.1|658372_659482_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	54.3	6.6e-112
>prophage 4
CP026595	Clostridioides difficile strain 12-00011 chromosome, complete genome	4119932	1403195	1466094	4119932	protease,tail,tRNA,portal,plate	Clostridium_phage(46.15%)	61	NA	NA
AVB52973.1|1403195_1403930_+|protease	Clp protease	protease	NA	NA	NA	NA
AVB52974.1|1404052_1406464_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
AVB52975.1|1406466_1407525_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
AVB52976.1|1407518_1408853_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AVB52977.1|1408839_1409382_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AVB52978.1|1409669_1410716_+	DNA recombination/repair protein RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
AVB55355.1|1410891_1412433_+	ribonuclease Y	NA	NA	NA	NA	NA
AVB52979.1|1413067_1414849_+	DNA helicase	NA	NA	NA	NA	NA
AVB52980.1|1414930_1415461_-	signal peptidase I	NA	NA	NA	NA	NA
AVB52981.1|1415500_1416325_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
AVB52982.1|1416581_1417490_+	recombinase	NA	NA	NA	NA	NA
AVB52983.1|1417633_1419079_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
AVB52984.1|1419389_1419842_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVB52985.1|1420254_1421832_+	PTS maltose transporter subunit IICB	NA	NA	NA	NA	NA
AVB52986.1|1421990_1422743_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AVB55356.1|1422881_1424222_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
AVB52987.1|1424333_1425530_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AVB52988.1|1425914_1426865_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AVB52989.1|1427025_1427778_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
AVB52990.1|1427869_1428646_-	exonuclease	NA	NA	NA	NA	NA
AVB52991.1|1428960_1430859_+	glutamine synthetase	NA	NA	NA	NA	NA
AVB55357.1|1430986_1432108_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
AVB52992.1|1432306_1432639_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVB52993.1|1432625_1433684_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AVB52994.1|1433676_1434747_+	hypothetical protein	NA	NA	NA	NA	NA
AVB52995.1|1434848_1435385_+	lipoprotein	NA	NA	NA	NA	NA
AVB52996.1|1435501_1436209_+	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.0	3.6e-55
AVB52997.1|1436210_1436927_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
AVB52998.1|1436928_1437687_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
AVB52999.1|1437830_1439219_+	sensor histidine kinase	NA	NA	NA	NA	NA
AVB53000.1|1439294_1440116_-	pyridoxamine kinase	NA	NA	NA	NA	NA
AVB53001.1|1440366_1441521_+	amidase domain-containing protein	NA	NA	NA	NA	NA
AVB53002.1|1441703_1441904_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AVB53003.1|1442324_1442753_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AVB53004.1|1442895_1443651_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AVB53005.1|1443771_1444188_-	hypothetical protein	NA	NA	NA	NA	NA
AVB53006.1|1444351_1444858_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AVB53007.1|1444939_1445260_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AVB53008.1|1445428_1445626_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVB53009.1|1445730_1446171_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
AVB53010.1|1446419_1446863_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	7.6e-19
AVB53011.1|1446867_1447932_+|tail	phage tail sheath protein	tail	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
AVB53012.1|1447945_1448374_+|portal	phage portal protein	portal	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AVB53013.1|1448487_1448934_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
AVB53014.1|1448960_1449128_+	hypothetical protein	NA	NA	NA	NA	NA
AVB53015.1|1449127_1451581_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	61.0	6.1e-17
AVB53016.1|1451580_1452003_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	70.4	2.2e-52
AVB53017.1|1452284_1453814_+	cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
AVB53018.1|1453829_1454156_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
AVB53019.1|1454155_1454584_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
AVB53020.1|1454576_1455629_+|plate	baseplate protein J	plate	A0A0A8WFP3	Clostridium_phage	71.3	9.3e-140
AVB53021.1|1455625_1456324_+	hypothetical protein	NA	A0A090D815	Clostridium_phage	56.9	3.3e-48
AVB53022.1|1456324_1457311_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
AVB53023.1|1457332_1462510_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	28.3	8.2e-88
AVB53024.1|1462526_1462880_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	4.2e-12
AVB53025.1|1463142_1463403_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AVB53026.1|1463627_1464083_-	hypothetical protein	NA	NA	NA	NA	NA
AVB53027.1|1464310_1464730_-	XRE family transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AVB53028.1|1465028_1465238_+	XRE family transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AVB53029.1|1465257_1465479_+	hypothetical protein	NA	NA	NA	NA	NA
AVB53030.1|1465695_1466094_-	transcriptional regulator	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 5
CP026595	Clostridioides difficile strain 12-00011 chromosome, complete genome	4119932	1548786	1557331	4119932		Pandoravirus(33.33%)	10	NA	NA
AVB53098.1|1548786_1549371_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	4.2e-57
AVB53099.1|1549363_1550722_+	aminodeoxychorismate synthase, component I	NA	S4VNU7	Pandoravirus	41.2	3.0e-37
AVB53100.1|1550711_1551455_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AVB53101.1|1551488_1552190_+	hypothetical protein	NA	NA	NA	NA	NA
AVB53102.1|1552215_1552788_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AVB53103.1|1552841_1553645_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	28.6	2.4e-23
AVB53104.1|1553655_1554021_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AVB53105.1|1554013_1554520_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AVB53106.1|1554500_1555286_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.0e-13
AVB53107.1|1555540_1557331_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.8	5.6e-52
>prophage 6
CP026595	Clostridioides difficile strain 12-00011 chromosome, complete genome	4119932	1684743	1739874	4119932	terminase,holin,integrase,capsid,head,tail,portal	Clostridium_phage(78.18%)	68	1678746:1678761	1687966:1687981
1678746:1678761	attL	ATATAAAAGAGCAGAT	NA	NA	NA	NA
AVB53219.1|1684743_1685874_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
AVB53220.1|1685952_1686660_-	DNA-binding protein	NA	NA	NA	NA	NA
AVB53221.1|1686672_1687542_-	protein kinase	NA	NA	NA	NA	NA
AVB53222.1|1688161_1688668_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
1687966:1687981	attR	ATATAAAAGAGCAGAT	NA	NA	NA	NA
AVB53223.1|1688743_1689292_-	transcriptional regulator	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
AVB53224.1|1689303_1689645_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
AVB53225.1|1689821_1690025_+	transcriptional regulator	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
AVB53226.1|1690072_1690882_+	phage antirepressor protein	NA	A0A0A8WIE3	Clostridium_phage	97.4	1.0e-146
AVB53227.1|1690928_1691138_+	hypothetical protein	NA	NA	NA	NA	NA
AVB53228.1|1691147_1691522_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
AVB53229.1|1691597_1691795_+	XRE family transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	2.9e-26
AVB53230.1|1691825_1692218_+	DNA-binding protein	NA	A0A0A8WHS2	Clostridium_phage	93.0	9.6e-58
AVB53231.1|1692418_1692856_+	hypothetical protein	NA	NA	NA	NA	NA
AVB53232.1|1692867_1694034_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
AVB53233.1|1694048_1694384_+	hypothetical protein	NA	NA	NA	NA	NA
AVB53234.1|1694436_1695009_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
AVB53235.1|1695031_1695604_+	DUF2815 domain-containing protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
AVB53236.1|1695603_1697562_+	DNA polymerase I	NA	A0A0A7RTL3	Clostridium_phage	69.1	7.8e-265
AVB53237.1|1697573_1699991_+	hypothetical protein	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
AVB53238.1|1700272_1700599_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
AVB53239.1|1700547_1701918_+	ATP-dependent helicase	NA	A0A1S7FYY5	Listeria_phage	60.0	8.4e-157
AVB53240.1|1702071_1702551_+	hypothetical protein	NA	I2E8Y5	Clostridium_phage	51.0	4.4e-36
AVB53241.1|1703577_1704552_+	hypothetical protein	NA	NA	NA	NA	NA
AVB53242.1|1704607_1704808_-	hypothetical protein	NA	NA	NA	NA	NA
AVB53243.1|1704788_1705082_+	hypothetical protein	NA	NA	NA	NA	NA
AVB53244.1|1705151_1705844_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	97.0	7.0e-120
AVB53245.1|1705833_1707075_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	1.1e-243
AVB53246.1|1707080_1708523_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	97.7	3.0e-274
AVB53247.1|1708512_1710048_+|head	phage head morphogenesis protein	head	X5JAI9	Clostridium_phage	71.9	2.5e-194
AVB53248.1|1710049_1710298_+	hypothetical protein	NA	NA	NA	NA	NA
AVB53249.1|1710365_1710929_+	scaffolding protein	NA	A0A0A8WFU8	Clostridium_phage	93.6	6.0e-85
AVB53250.1|1710940_1711831_+|capsid	capsid protein	capsid	X5J9Z5	Clostridium_phage	99.3	1.4e-165
AVB53251.1|1711849_1712083_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	93.5	4.6e-31
AVB53252.1|1712092_1712494_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
AVB53253.1|1712487_1712835_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
AVB53254.1|1712834_1713125_+	hypothetical protein	NA	A0A0A8WFV8	Clostridium_phage	96.7	4.1e-45
AVB53255.1|1713234_1714041_+	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
AVB53256.1|1714389_1714827_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
AVB53257.1|1714819_1714996_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	93.1	1.1e-21
AVB53258.1|1714996_1716307_+|tail	phage tail protein	tail	X5JAJ1	Clostridium_phage	92.7	8.1e-234
AVB53259.1|1716323_1716794_+	hypothetical protein	NA	A0A0A8WJ62	Clostridium_phage	81.3	1.3e-69
AVB53260.1|1716852_1717680_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	48.3	1.8e-45
AVB53261.1|1717751_1718192_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
AVB53262.1|1718191_1718386_+	hypothetical protein	NA	NA	NA	NA	NA
AVB53263.1|1718532_1718694_+	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
AVB53264.1|1720030_1720219_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	96.8	2.2e-23
AVB53265.1|1720337_1721204_+	phage repressor protein	NA	X5JAW1	Clostridium_phage	80.1	3.2e-130
AVB53266.1|1721256_1721391_+	hypothetical protein	NA	NA	NA	NA	NA
AVB53267.1|1722068_1722596_+	DUF4352 domain-containing protein	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
AVB53268.1|1722733_1723501_+	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	44.4	6.3e-45
AVB53269.1|1723566_1725939_+	hypothetical protein	NA	X5JAB7	Clostridium_phage	41.5	8.8e-146
AVB53270.1|1725955_1726645_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.8	2.0e-119
AVB53271.1|1726637_1728530_+	cell wall hydrolase	NA	A3QSB3	Clostridium_virus	94.8	0.0e+00
AVB53272.1|1728543_1728804_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	86.0	1.4e-33
AVB53273.1|1728808_1729228_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	95.7	1.3e-71
AVB53274.1|1729228_1730278_+|tail	phage tail protein	tail	A0A0A8WFK0	Clostridium_phage	94.8	1.0e-186
AVB53275.1|1730270_1730888_+	DUF2313 domain-containing protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
AVB53276.1|1730899_1731925_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	87.8	9.1e-140
AVB53277.1|1731941_1733468_+	hypothetical protein	NA	B6SBV0	Clostridium_virus	60.8	1.3e-89
AVB53278.1|1733482_1733776_+	hypothetical protein	NA	E2ELK3	Clostridium_phage	77.9	2.2e-38
AVB53279.1|1733775_1733958_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	95.0	5.5e-24
AVB53280.1|1733991_1734558_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	77.8	3.6e-37
AVB53281.1|1734588_1734879_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	95.8	6.9e-45
AVB53282.1|1734882_1735140_+|holin	holin	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
AVB53283.1|1735400_1736264_+	abortive infection bacteriophage resistance protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
AVB53284.1|1736342_1737155_+	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
AVB53285.1|1737248_1739648_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
AVB53286.1|1739688_1739874_-	PemI	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
>prophage 7
CP026595	Clostridioides difficile strain 12-00011 chromosome, complete genome	4119932	2598180	2625296	4119932	protease,coat,transposase,tRNA	Clostridium_phage(44.44%)	25	NA	NA
AVB54047.1|2598180_2599215_-|protease	protease	protease	NA	NA	NA	NA
AVB54048.1|2599207_2599582_-	transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	50.8	1.4e-29
AVB54049.1|2601331_2601919_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AVB54050.1|2601984_2603019_-|protease	protease	protease	NA	NA	NA	NA
AVB54051.1|2603011_2603386_-	transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	53.2	2.8e-30
AVB54052.1|2604027_2604510_-	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
AVB54053.1|2604801_2605506_-	hypothetical protein	NA	NA	NA	NA	NA
AVB54054.1|2605859_2606876_-	transglycosylase	NA	NA	NA	NA	NA
AVB54055.1|2607003_2607510_-	3'-5' exonuclease	NA	A0A0A7RWA3	Clostridium_phage	41.2	2.9e-22
AVB54056.1|2607668_2608337_-	hypothetical protein	NA	NA	NA	NA	NA
AVB54057.1|2608749_2609256_-	flavin reductase	NA	NA	NA	NA	NA
AVB54058.1|2609626_2610655_-	exonuclease	NA	NA	NA	NA	NA
AVB54059.1|2610702_2611563_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	32.4	2.9e-30
AVB54060.1|2611841_2612051_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
AVB54061.1|2612050_2612317_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
AVB54062.1|2612345_2612918_+	rubrerythrin family protein	NA	NA	NA	NA	NA
AVB54063.1|2613151_2614342_-	cell wall hydrolase	NA	A0A0K2SUC1	Clostridium_phage	50.7	1.7e-28
AVB54064.1|2614601_2615033_-	dUTP diphosphatase	NA	A0A1L2BX65	Bacteriophage	51.0	4.6e-37
AVB54065.1|2615145_2617374_+	type IA DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	29.0	1.1e-28
AVB54066.1|2617484_2617970_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVB54067.1|2618221_2619445_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVB54068.1|2619448_2622583_+	AcrB/AcrD/AcrF family protein	NA	S5VTK5	Leptospira_phage	26.8	1.6e-110
AVB54069.1|2622604_2623915_+	multidrug transporter	NA	NA	NA	NA	NA
AVB54070.1|2624124_2624952_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	35.9	5.2e-37
AVB54071.1|2624978_2625296_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 8
CP026595	Clostridioides difficile strain 12-00011 chromosome, complete genome	4119932	3845406	3859238	4119932	portal,transposase	Clostridioides_phage(69.23%)	18	NA	NA
AVB55053.1|3845406_3846546_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	91.8	4.9e-195
AVB55054.1|3846878_3847454_+	hypothetical protein	NA	NA	NA	NA	NA
AVB55055.1|3847464_3847653_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	96.8	5.3e-22
AVB55056.1|3847847_3848405_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	97.8	4.1e-94
AVB55057.1|3848704_3849448_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	92.3	4.3e-131
AVB55058.1|3849901_3850444_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	95.0	8.3e-92
AVB55059.1|3850538_3851744_+|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	95.0	2.0e-210
AVB55060.1|3851721_3851889_+	hydrolase	NA	A0A0A8WIC2	Clostridium_phage	97.4	3.6e-14
AVB55416.1|3851959_3852142_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WJ04	Clostridium_phage	91.5	9.7e-21
AVB55061.1|3852272_3852716_-	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	82.6	4.3e-62
AVB55062.1|3852933_3853377_-	hypothetical protein	NA	NA	NA	NA	NA
AVB55063.1|3853398_3853716_-	hypothetical protein	NA	NA	NA	NA	NA
AVB55417.1|3853905_3854568_-	DUF4367 domain-containing protein	NA	A0A1V0DZZ4	Clostridioides_phage	76.2	4.4e-87
AVB55064.1|3854599_3855142_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1V0DZZ1	Clostridioides_phage	96.7	3.8e-89
AVB55065.1|3855381_3855564_-	hypothetical protein	NA	NA	NA	NA	NA
AVB55066.1|3855591_3856203_-	hypothetical protein	NA	NA	NA	NA	NA
AVB55067.1|3856679_3857894_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	7.9e-50
AVB55068.1|3858080_3859238_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.4e-17
>prophage 9
CP026595	Clostridioides difficile strain 12-00011 chromosome, complete genome	4119932	4030963	4046386	4119932		Streptococcus_phage(92.31%)	19	NA	NA
AVB55229.1|4030963_4031287_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	73.5	1.7e-39
AVB55230.1|4031301_4031685_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	6.3e-38
AVB55231.1|4031780_4032194_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
AVB55232.1|4032300_4032759_+	glyoxalase	NA	NA	NA	NA	NA
AVB55233.1|4032783_4033326_+	hypothetical protein	NA	NA	NA	NA	NA
AVB55422.1|4033382_4033889_+	hypothetical protein	NA	NA	NA	NA	NA
AVB55234.1|4033998_4035393_+	ATP-binding protein	NA	A0A1S5SFB5	Streptococcus_phage	66.8	1.3e-178
AVB55423.1|4035672_4036794_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.7	1.3e-134
AVB55235.1|4036800_4036935_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
AVB55236.1|4036935_4037157_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
AVB55237.1|4037476_4038115_+	chloramphenicol acetyltransferase CAT	NA	G3CFL0	Escherichia_phage	35.3	7.6e-36
AVB55238.1|4038191_4038380_+	hypothetical protein	NA	NA	NA	NA	NA
AVB55239.1|4038400_4038898_+	conjugal transfer protein	NA	A0A1S5SF25	Streptococcus_phage	41.2	1.3e-27
AVB55240.1|4038913_4039417_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	47.6	4.4e-39
AVB55241.1|4039529_4039919_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.8	8.1e-49
AVB55242.1|4039905_4042338_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
AVB55243.1|4042337_4044473_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.3e-177
AVB55244.1|4044469_4045477_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	67.3	6.4e-130
AVB55245.1|4045492_4046386_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	53.0	1.6e-79
