The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026598	Clostridioides difficile strain 10-00253 chromosome, complete genome	4120065	285745	301931	4120065		Synechococcus_phage(23.08%)	14	NA	NA
AVB66439.1|285745_286258_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	2.3e-83
AVB66440.1|286707_287184_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AVB66441.1|287189_287888_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AVB66442.1|287899_289267_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AVB66443.1|289260_290337_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
AVB66444.1|290330_290924_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
AVB66445.1|290916_292449_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AVB66446.1|292459_293710_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AVB66447.1|293734_297541_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.1	3.0e-31
AVB66448.1|297746_298619_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	3.8e-14
AVB66449.1|298727_299609_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	61.9	8.2e-97
AVB66450.1|299645_300203_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.3e-47
AVB66451.1|300240_301224_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.9	9.2e-81
AVB66452.1|301262_301931_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	47.7	4.1e-24
>prophage 2
CP026598	Clostridioides difficile strain 10-00253 chromosome, complete genome	4120065	466689	473318	4120065	integrase,transposase	Clostridium_phage(33.33%)	7	458027:458042	479099:479114
458027:458042	attL	TAGCTAAATTCCAAAA	NA	NA	NA	NA
AVB66608.1|466689_468045_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	34.4	8.8e-58
AVB66609.1|468126_468342_-|integrase	integrase	integrase	A0A0A8WIE1	Clostridium_phage	68.1	7.0e-10
AVB66610.1|468567_469602_+	YHYH domain-containing protein	NA	NA	NA	NA	NA
AVB66611.1|469688_469892_+	DUF4236 domain-containing protein	NA	A0A0A8WIL0	Clostridium_phage	74.1	1.5e-14
AVB66612.1|470062_471223_+	cell wall-binding protein Cwp27	NA	A0A2R2ZGK6	Clostridioides_phage	47.9	5.0e-70
AVB66613.1|471753_472653_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	60.7	2.7e-79
AVB66614.1|472646_473318_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	43.0	1.4e-43
479099:479114	attR	TTTTGGAATTTAGCTA	NA	NA	NA	NA
>prophage 3
CP026598	Clostridioides difficile strain 10-00253 chromosome, complete genome	4120065	588804	659577	4120065	tRNA,protease,transposase,coat	Streptococcus_phage(33.33%)	55	NA	NA
AVB66706.1|588804_589521_+|protease	protease PrsW	protease	NA	NA	NA	NA
AVB66707.1|589599_590910_+	methylase	NA	NA	NA	NA	NA
AVB66708.1|591009_591546_+	signal peptidase I	NA	NA	NA	NA	NA
AVB66709.1|591711_592248_+	signal peptidase I	NA	NA	NA	NA	NA
AVB66710.1|592257_593013_+	endonuclease	NA	NA	NA	NA	NA
AVB66711.1|593086_594754_+	nucleoside kinase	NA	NA	NA	NA	NA
AVB66712.1|595326_596256_+	glutaminase	NA	NA	NA	NA	NA
AVB66713.1|596353_596917_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AVB66714.1|597404_598241_+	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.5	2.1e-30
AVB66715.1|598492_599488_+	aldo/keto reductase	NA	NA	NA	NA	NA
AVB66716.1|599744_600149_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
AVB66717.1|600309_600501_+	hypothetical protein	NA	NA	NA	NA	NA
AVB66718.1|601148_602063_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
AVB66719.1|602168_604406_+	ATP-binding protein	NA	A0A2H4UU76	Bodo_saltans_virus	32.7	9.9e-06
AVB69745.1|605037_605655_+	endonuclease III	NA	NA	NA	NA	NA
AVB66720.1|605848_606319_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AVB66721.1|606354_607203_+	DegV family protein	NA	NA	NA	NA	NA
AVB66722.1|607626_608631_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVB66723.1|608755_609868_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVB66724.1|610290_611052_+	hypothetical protein	NA	NA	NA	NA	NA
AVB66725.1|611054_611873_+	hypothetical protein	NA	NA	NA	NA	NA
AVB66726.1|612052_612655_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AVB66727.1|613517_615437_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
AVB69746.1|616866_617016_-	hypothetical protein	NA	NA	NA	NA	NA
AVB66728.1|617372_618491_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	2.2e-110
AVB66729.1|619488_620526_-	hypothetical protein	NA	NA	NA	NA	NA
AVB66730.1|620518_621205_-	hypothetical protein	NA	NA	NA	NA	NA
AVB66731.1|621216_621537_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVB66732.1|621897_623238_+	ATP-binding protein	NA	X5JAC0	Clostridium_phage	38.8	2.4e-79
AVB66733.1|623915_624485_-	hydrolase	NA	NA	NA	NA	NA
AVB66734.1|624645_625896_-	MFS transporter	NA	NA	NA	NA	NA
AVB66735.1|626187_626775_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVB66736.1|627096_628557_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AVB66737.1|628930_629536_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVB66738.1|629538_632106_+	pyruvate, phosphate dikinase	NA	A0A1V0SGR7	Hokovirus	39.6	4.1e-48
AVB66739.1|632098_632263_+	hypothetical protein	NA	NA	NA	NA	NA
AVB66740.1|633371_633647_+	hypothetical protein	NA	NA	NA	NA	NA
AVB66741.1|633666_633954_+	hypothetical protein	NA	NA	NA	NA	NA
AVB66742.1|635508_636618_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	3.1e-109
AVB66743.1|636682_638806_+	ATP-binding protein	NA	NA	NA	NA	NA
AVB66744.1|638820_644031_+	hypothetical protein	NA	NA	NA	NA	NA
AVB66745.1|644255_646355_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.8	2.2e-68
AVB66746.1|646397_646793_-	hypothetical protein	NA	NA	NA	NA	NA
AVB66747.1|647853_648042_+	hypothetical protein	NA	NA	NA	NA	NA
AVB66748.1|648226_648667_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
AVB66749.1|649002_650316_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	41.0	1.6e-93
AVB66750.1|650333_650870_+	chromosome partitioning protein ParB	NA	A0A220GKT8	Streptococcus_phage	70.3	4.2e-64
AVB66751.1|651388_651610_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
AVB66752.1|651609_651873_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
AVB66753.1|651934_652507_+	rubrerythrin family protein	NA	NA	NA	NA	NA
AVB66754.1|653324_653858_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	50.0	7.0e-35
AVB66755.1|654082_654262_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AVB66756.1|655963_656377_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
AVB66757.1|656451_656961_+	GrpB family protein	NA	NA	NA	NA	NA
AVB66758.1|658467_659577_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	54.3	6.6e-112
>prophage 4
CP026598	Clostridioides difficile strain 10-00253 chromosome, complete genome	4120065	1403277	1466176	4120065	tail,protease,tRNA,plate,portal	Clostridium_phage(46.15%)	61	NA	NA
AVB67392.1|1403277_1404012_+|protease	Clp protease	protease	NA	NA	NA	NA
AVB67393.1|1404134_1406546_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
AVB67394.1|1406548_1407607_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
AVB67395.1|1407600_1408935_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AVB67396.1|1408921_1409464_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AVB67397.1|1409751_1410798_+	DNA recombination/repair protein RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
AVB69764.1|1410973_1412515_+	ribonuclease Y	NA	NA	NA	NA	NA
AVB67398.1|1413149_1414931_+	DNA helicase	NA	NA	NA	NA	NA
AVB67399.1|1415012_1415543_-	signal peptidase I	NA	NA	NA	NA	NA
AVB67400.1|1415582_1416407_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
AVB67401.1|1416663_1417572_+	recombinase	NA	NA	NA	NA	NA
AVB67402.1|1417715_1419161_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
AVB67403.1|1419471_1419924_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVB67404.1|1420336_1421914_+	PTS maltose transporter subunit IICB	NA	NA	NA	NA	NA
AVB67405.1|1422072_1422825_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AVB69765.1|1422963_1424304_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
AVB67406.1|1424415_1425612_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AVB67407.1|1425996_1426947_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AVB67408.1|1427107_1427860_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
AVB67409.1|1427951_1428728_-	exonuclease	NA	NA	NA	NA	NA
AVB67410.1|1429042_1430941_+	glutamine synthetase	NA	NA	NA	NA	NA
AVB69766.1|1431068_1432190_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
AVB67411.1|1432388_1432721_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVB67412.1|1432707_1433766_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AVB67413.1|1433758_1434829_+	hypothetical protein	NA	NA	NA	NA	NA
AVB67414.1|1434930_1435467_+	lipoprotein	NA	NA	NA	NA	NA
AVB67415.1|1435583_1436291_+	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.0	3.6e-55
AVB67416.1|1436292_1437009_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
AVB67417.1|1437010_1437769_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
AVB67418.1|1437912_1439301_+	sensor histidine kinase	NA	NA	NA	NA	NA
AVB67419.1|1439376_1440198_-	pyridoxamine kinase	NA	NA	NA	NA	NA
AVB67420.1|1440448_1441603_+	amidase domain-containing protein	NA	NA	NA	NA	NA
AVB67421.1|1441785_1441986_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AVB67422.1|1442406_1442835_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AVB67423.1|1442977_1443733_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AVB67424.1|1443853_1444270_-	hypothetical protein	NA	NA	NA	NA	NA
AVB67425.1|1444433_1444940_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AVB67426.1|1445021_1445342_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AVB67427.1|1445510_1445708_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVB67428.1|1445812_1446253_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
AVB67429.1|1446501_1446945_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	7.6e-19
AVB67430.1|1446949_1448014_+|tail	phage tail sheath protein	tail	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
AVB67431.1|1448027_1448456_+|portal	phage portal protein	portal	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AVB67432.1|1448569_1449016_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
AVB67433.1|1449042_1449210_+	hypothetical protein	NA	NA	NA	NA	NA
AVB67434.1|1449209_1451663_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	61.0	6.1e-17
AVB67435.1|1451662_1452085_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	70.4	2.2e-52
AVB67436.1|1452366_1453896_+	cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
AVB67437.1|1453911_1454238_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
AVB67438.1|1454237_1454666_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
AVB67439.1|1454658_1455711_+|plate	baseplate protein J	plate	A0A0A8WFP3	Clostridium_phage	71.3	9.3e-140
AVB67440.1|1455707_1456406_+	hypothetical protein	NA	A0A090D815	Clostridium_phage	56.9	3.3e-48
AVB67441.1|1456406_1457393_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
AVB67442.1|1457414_1462592_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	28.3	8.2e-88
AVB67443.1|1462608_1462962_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	4.2e-12
AVB67444.1|1463224_1463485_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AVB67445.1|1463709_1464165_-	hypothetical protein	NA	NA	NA	NA	NA
AVB67446.1|1464392_1464812_-	XRE family transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AVB67447.1|1465110_1465320_+	XRE family transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AVB67448.1|1465339_1465561_+	hypothetical protein	NA	NA	NA	NA	NA
AVB67449.1|1465777_1466176_-	transcriptional regulator	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 5
CP026598	Clostridioides difficile strain 10-00253 chromosome, complete genome	4120065	1548868	1557413	4120065		Pandoravirus(33.33%)	10	NA	NA
AVB67517.1|1548868_1549453_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	4.2e-57
AVB67518.1|1549445_1550804_+	aminodeoxychorismate synthase, component I	NA	S4VNU7	Pandoravirus	41.2	3.0e-37
AVB67519.1|1550793_1551537_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AVB67520.1|1551570_1552272_+	hypothetical protein	NA	NA	NA	NA	NA
AVB67521.1|1552297_1552870_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AVB67522.1|1552923_1553727_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	28.6	2.4e-23
AVB69769.1|1553737_1554103_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AVB67523.1|1554095_1554602_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AVB67524.1|1554582_1555368_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.0e-13
AVB67525.1|1555622_1557413_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.8	5.6e-52
>prophage 6
CP026598	Clostridioides difficile strain 10-00253 chromosome, complete genome	4120065	1684827	1739959	4120065	holin,integrase,terminase,tail,head,capsid,portal	Clostridium_phage(78.18%)	66	1678830:1678845	1688050:1688065
1678830:1678845	attL	ATATAAAAGAGCAGAT	NA	NA	NA	NA
AVB67637.1|1684827_1685958_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
AVB67638.1|1686036_1686744_-	DNA-binding protein	NA	NA	NA	NA	NA
AVB67639.1|1686756_1687626_-	protein kinase	NA	NA	NA	NA	NA
AVB67640.1|1688245_1688752_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
1688050:1688065	attR	ATATAAAAGAGCAGAT	NA	NA	NA	NA
AVB67641.1|1688827_1689376_-	transcriptional regulator	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
AVB67642.1|1689387_1689729_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
AVB67643.1|1689905_1690109_+	transcriptional regulator	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
AVB67644.1|1690156_1690966_+	phage antirepressor protein	NA	A0A0A8WIE3	Clostridium_phage	97.4	1.0e-146
AVB67645.1|1691012_1691222_+	hypothetical protein	NA	NA	NA	NA	NA
AVB67646.1|1691231_1691606_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
AVB67647.1|1691681_1691879_+	XRE family transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	2.9e-26
AVB67648.1|1691909_1692302_+	DNA-binding protein	NA	A0A0A8WHS2	Clostridium_phage	93.0	9.6e-58
AVB67649.1|1692502_1692940_+	hypothetical protein	NA	NA	NA	NA	NA
AVB67650.1|1692951_1694118_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
AVB67651.1|1694132_1694468_+	hypothetical protein	NA	NA	NA	NA	NA
AVB67652.1|1694520_1695093_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
AVB67653.1|1695115_1695688_+	DUF2815 domain-containing protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
AVB67654.1|1695687_1697646_+	DNA polymerase I	NA	A0A0A7RTL3	Clostridium_phage	69.1	7.8e-265
AVB67655.1|1697657_1700075_+	hypothetical protein	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
AVB67656.1|1700356_1700683_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
AVB67657.1|1700631_1702002_+	ATP-dependent helicase	NA	A0A1S7FYY5	Listeria_phage	60.0	8.4e-157
AVB67658.1|1702155_1702635_+	hypothetical protein	NA	I2E8Y5	Clostridium_phage	51.0	4.4e-36
AVB67659.1|1704873_1705167_+	hypothetical protein	NA	NA	NA	NA	NA
AVB67660.1|1705236_1705929_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	97.0	7.0e-120
AVB69775.1|1705918_1707160_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	1.1e-243
AVB67661.1|1707165_1708608_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	97.7	3.0e-274
AVB67662.1|1708597_1710133_+|head	phage head morphogenesis protein	head	X5JAI9	Clostridium_phage	71.9	2.5e-194
AVB67663.1|1710134_1710383_+	hypothetical protein	NA	NA	NA	NA	NA
AVB67664.1|1710450_1711014_+	scaffolding protein	NA	A0A0A8WFU8	Clostridium_phage	93.6	6.0e-85
AVB67665.1|1711025_1711916_+|capsid	capsid protein	capsid	X5J9Z5	Clostridium_phage	99.3	1.4e-165
AVB67666.1|1711934_1712168_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	93.5	4.6e-31
AVB67667.1|1712177_1712579_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
AVB67668.1|1712572_1712920_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
AVB67669.1|1712919_1713210_+	hypothetical protein	NA	A0A0A8WFV8	Clostridium_phage	96.7	4.1e-45
AVB67670.1|1713319_1714126_+	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
AVB67671.1|1714474_1714912_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
AVB67672.1|1714904_1715081_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	93.1	1.1e-21
AVB67673.1|1715081_1716392_+|tail	phage tail protein	tail	X5JAJ1	Clostridium_phage	92.7	8.1e-234
AVB67674.1|1716408_1716879_+	hypothetical protein	NA	A0A0A8WJ62	Clostridium_phage	81.3	1.3e-69
AVB67675.1|1716937_1717765_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	48.3	1.8e-45
AVB67676.1|1717836_1718277_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
AVB67677.1|1718276_1718471_+	hypothetical protein	NA	NA	NA	NA	NA
AVB67678.1|1718617_1718779_+	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
AVB67679.1|1720115_1720304_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	96.8	2.2e-23
AVB67680.1|1720422_1721289_+	phage repressor protein	NA	X5JAW1	Clostridium_phage	80.1	3.2e-130
AVB67681.1|1721341_1721476_+	hypothetical protein	NA	NA	NA	NA	NA
AVB67682.1|1722153_1722681_+	DUF4352 domain-containing protein	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
AVB67683.1|1722818_1723586_+	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	44.4	6.3e-45
AVB67684.1|1723651_1726024_+	hypothetical protein	NA	X5JAB7	Clostridium_phage	41.5	8.8e-146
AVB67685.1|1726040_1726730_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.8	2.0e-119
AVB67686.1|1726722_1728615_+	cell wall hydrolase	NA	A3QSB3	Clostridium_virus	94.8	0.0e+00
AVB67687.1|1728628_1728889_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	86.0	1.4e-33
AVB67688.1|1728893_1729313_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	95.7	1.3e-71
AVB67689.1|1729313_1730363_+|tail	phage tail protein	tail	A0A0A8WFK0	Clostridium_phage	94.8	1.0e-186
AVB67690.1|1730355_1730973_+	DUF2313 domain-containing protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
AVB67691.1|1730984_1732010_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	87.8	9.1e-140
AVB67692.1|1732026_1733553_+	hypothetical protein	NA	B6SBV0	Clostridium_virus	60.8	1.3e-89
AVB67693.1|1733567_1733861_+	hypothetical protein	NA	E2ELK3	Clostridium_phage	77.9	2.2e-38
AVB67694.1|1733860_1734043_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	95.0	5.5e-24
AVB67695.1|1734076_1734643_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	77.8	3.6e-37
AVB67696.1|1734673_1734964_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	95.8	6.9e-45
AVB67697.1|1734967_1735225_+|holin	holin	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
AVB67698.1|1735485_1736349_+	abortive infection bacteriophage resistance protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
AVB67699.1|1736427_1737240_+	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
AVB67700.1|1737333_1739733_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
AVB67701.1|1739773_1739959_-	PemI	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
>prophage 7
CP026598	Clostridioides difficile strain 10-00253 chromosome, complete genome	4120065	2598274	2625390	4120065	tRNA,protease,transposase,coat	Clostridium_phage(44.44%)	25	NA	NA
AVB68461.1|2598274_2599309_-|protease	protease	protease	NA	NA	NA	NA
AVB68462.1|2599301_2599676_-	transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	50.8	1.4e-29
AVB68463.1|2601425_2602013_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AVB68464.1|2602078_2603113_-|protease	protease	protease	NA	NA	NA	NA
AVB68465.1|2603105_2603480_-	transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	53.2	2.8e-30
AVB68466.1|2604121_2604604_-	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
AVB68467.1|2604895_2605600_-	hypothetical protein	NA	NA	NA	NA	NA
AVB68468.1|2605953_2606970_-	transglycosylase	NA	NA	NA	NA	NA
AVB68469.1|2607097_2607604_-	3'-5' exonuclease	NA	A0A0A7RWA3	Clostridium_phage	41.2	2.9e-22
AVB68470.1|2607762_2608431_-	hypothetical protein	NA	NA	NA	NA	NA
AVB68471.1|2608843_2609350_-	flavin reductase	NA	NA	NA	NA	NA
AVB68472.1|2609720_2610749_-	exonuclease	NA	NA	NA	NA	NA
AVB68473.1|2610796_2611657_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	32.4	2.9e-30
AVB68474.1|2611935_2612145_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
AVB68475.1|2612144_2612411_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
AVB68476.1|2612439_2613012_+	rubrerythrin family protein	NA	NA	NA	NA	NA
AVB68477.1|2613245_2614436_-	cell wall hydrolase	NA	A0A0K2SUC1	Clostridium_phage	50.7	1.7e-28
AVB68478.1|2614695_2615127_-	dUTP diphosphatase	NA	A0A1L2BX65	Bacteriophage	51.0	4.6e-37
AVB68479.1|2615239_2617468_+	type IA DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	29.0	1.1e-28
AVB68480.1|2617578_2618064_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVB68481.1|2618315_2619539_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVB68482.1|2619542_2622677_+	AcrB/AcrD/AcrF family protein	NA	S5VTK5	Leptospira_phage	26.8	1.6e-110
AVB68483.1|2622698_2624009_+	multidrug transporter	NA	NA	NA	NA	NA
AVB68484.1|2624218_2625046_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	35.9	5.2e-37
AVB68485.1|2625072_2625390_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 8
CP026598	Clostridioides difficile strain 10-00253 chromosome, complete genome	4120065	3845533	3859365	4120065	portal,transposase	Clostridioides_phage(69.23%)	18	NA	NA
AVB69466.1|3845533_3846673_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	91.8	4.9e-195
AVB69467.1|3847005_3847581_+	hypothetical protein	NA	NA	NA	NA	NA
AVB69468.1|3847591_3847780_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	96.8	5.3e-22
AVB69469.1|3847974_3848532_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	97.8	4.1e-94
AVB69470.1|3848831_3849575_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	92.3	4.3e-131
AVB69471.1|3850028_3850571_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	95.0	8.3e-92
AVB69472.1|3850665_3851871_+|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	95.0	2.0e-210
AVB69473.1|3851848_3852016_+	hydrolase	NA	A0A0A8WIC2	Clostridium_phage	97.4	3.6e-14
AVB69825.1|3852086_3852269_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WJ04	Clostridium_phage	91.5	9.7e-21
AVB69474.1|3852399_3852843_-	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	82.6	4.3e-62
AVB69475.1|3853060_3853504_-	hypothetical protein	NA	NA	NA	NA	NA
AVB69476.1|3853525_3853843_-	hypothetical protein	NA	NA	NA	NA	NA
AVB69826.1|3854032_3854695_-	DUF4367 domain-containing protein	NA	A0A1V0DZZ4	Clostridioides_phage	76.2	4.4e-87
AVB69477.1|3854726_3855269_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1V0DZZ1	Clostridioides_phage	96.7	3.8e-89
AVB69478.1|3855508_3855691_-	hypothetical protein	NA	NA	NA	NA	NA
AVB69479.1|3855718_3856330_-	hypothetical protein	NA	NA	NA	NA	NA
AVB69480.1|3856806_3858021_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	7.9e-50
AVB69481.1|3858207_3859365_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.4e-17
>prophage 9
CP026598	Clostridioides difficile strain 10-00253 chromosome, complete genome	4120065	4031095	4046518	4120065		Streptococcus_phage(92.31%)	19	NA	NA
AVB69642.1|4031095_4031419_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	73.5	1.7e-39
AVB69643.1|4031433_4031817_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	6.3e-38
AVB69644.1|4031912_4032326_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
AVB69645.1|4032432_4032891_+	glyoxalase	NA	NA	NA	NA	NA
AVB69646.1|4032915_4033458_+	hypothetical protein	NA	NA	NA	NA	NA
AVB69831.1|4033514_4034021_+	hypothetical protein	NA	NA	NA	NA	NA
AVB69647.1|4034130_4035525_+	ATP-binding protein	NA	A0A1S5SFB5	Streptococcus_phage	66.8	1.3e-178
AVB69832.1|4035804_4036926_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.7	1.3e-134
AVB69648.1|4036932_4037067_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
AVB69649.1|4037067_4037289_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
AVB69650.1|4037608_4038247_+	chloramphenicol acetyltransferase CAT	NA	G3CFL0	Escherichia_phage	35.3	7.6e-36
AVB69651.1|4038323_4038512_+	hypothetical protein	NA	NA	NA	NA	NA
AVB69652.1|4038532_4039030_+	conjugal transfer protein	NA	A0A1S5SF25	Streptococcus_phage	41.2	1.3e-27
AVB69653.1|4039045_4039549_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	47.6	4.4e-39
AVB69654.1|4039661_4040051_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.8	8.1e-49
AVB69655.1|4040037_4042470_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
AVB69656.1|4042469_4044605_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.3e-177
AVB69657.1|4044601_4045609_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	67.3	6.4e-130
AVB69658.1|4045624_4046518_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	53.0	1.6e-79
