The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026613	Clostridioides difficile strain R1 chromosome, complete genome	4093143	277442	293625	4093143		Synechococcus_phage(23.08%)	14	NA	NA
AVD43655.1|277442_277955_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.6	1.7e-83
AVD43656.1|278404_278881_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	3.1e-26
AVD43657.1|278886_279585_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AVD43658.1|279596_280964_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	1.2e-49
AVD43659.1|280957_282034_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	42.8	2.9e-64
AVD43660.1|282027_282621_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.9	3.6e-24
AVD43661.1|282613_284146_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AVD43662.1|284156_285407_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AVD43663.1|285431_289238_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.1	1.2e-30
AVD43664.1|289441_290314_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	29.0	3.3e-13
AVD43665.1|290422_291292_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	61.5	6.2e-97
AVD43666.1|291340_291898_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.6	7.5e-48
AVD43667.1|291935_292919_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.1	3.8e-79
AVD43668.1|292956_293625_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	46.9	4.1e-24
>prophage 2
CP026613	Clostridioides difficile strain R1 chromosome, complete genome	4093143	572224	646288	4093143	tRNA,transposase,protease,coat	Streptococcus_phage(25.0%)	60	NA	NA
AVD43901.1|572224_572941_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVD43902.1|573019_574330_+	methylase	NA	NA	NA	NA	NA
AVD43903.1|574429_574966_+	signal peptidase I	NA	NA	NA	NA	NA
AVD43904.1|575131_575668_+	signal peptidase I	NA	NA	NA	NA	NA
AVD43905.1|575677_576433_+	endonuclease	NA	NA	NA	NA	NA
AVD43906.1|576506_578174_+	nucleoside kinase	NA	NA	NA	NA	NA
AVD43907.1|578747_579677_+	glutaminase	NA	NA	NA	NA	NA
AVD43908.1|579774_580338_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AVD43909.1|580820_581657_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.5	2.8e-30
AVD43910.1|581939_582935_+	aldo/keto reductase	NA	NA	NA	NA	NA
AVD43911.1|583168_583573_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
AVD43912.1|584330_585245_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
AVD43913.1|585350_587588_+	ATP-binding protein	NA	A0A2H4UU76	Bodo_saltans_virus	33.7	6.9e-07
AVD44850.1|588025_588643_+	endonuclease III	NA	NA	NA	NA	NA
AVD43914.1|588836_589307_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AVD43915.1|589341_590190_+	DegV family protein	NA	NA	NA	NA	NA
AVD43916.1|590477_591482_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVD43917.1|592589_593708_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	52.7	1.4e-109
AVD43918.1|594756_595518_+	hypothetical protein	NA	NA	NA	NA	NA
AVD43919.1|595520_596339_+	hypothetical protein	NA	NA	NA	NA	NA
AVD43920.1|596517_597120_+	DUF445 family protein	NA	NA	NA	NA	NA
AVD43921.1|597912_599832_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.8e-144
AVD43922.1|600556_601648_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
AVD43923.1|601995_602193_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVD43924.1|602552_603893_+	ATP-binding protein	NA	X5JAC0	Clostridium_phage	39.7	1.4e-79
AVD43925.1|604234_604804_-	hydrolase	NA	NA	NA	NA	NA
AVD43926.1|604964_606215_-	MFS transporter	NA	NA	NA	NA	NA
AVD43927.1|606223_606457_-	hypothetical protein	NA	NA	NA	NA	NA
AVD43928.1|606507_607095_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVD43929.1|607386_608847_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AVD43930.1|609215_609821_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVD43931.1|609823_612391_+	pyruvate, phosphate dikinase	NA	A0A1V0SGR7	Hokovirus	39.2	3.5e-47
AVD43932.1|612383_612548_+	hypothetical protein	NA	NA	NA	NA	NA
AVD43933.1|612650_614735_-	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	26.6	2.9e-07
AVD44851.1|614782_616012_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AVD43934.1|616013_617195_-	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	26.0	6.6e-09
AVD43935.1|618321_618597_+	hypothetical protein	NA	NA	NA	NA	NA
AXL65668.1|618616_618904_+	hypothetical protein	NA	NA	NA	NA	NA
AVD43936.1|619323_621840_+	ATP-binding protein	NA	NA	NA	NA	NA
AVD43937.1|621854_627065_+	hypothetical protein	NA	NA	NA	NA	NA
AVD43938.1|627577_627769_-	hypothetical protein	NA	NA	NA	NA	NA
AVD43939.1|627962_628151_+	hypothetical protein	NA	NA	NA	NA	NA
AVD43940.1|628320_628761_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
AVD43941.1|629095_630409_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	41.5	3.3e-94
AVD43942.1|630426_630963_+	chromosome partitioning protein ParB	NA	A0A220GKT8	Streptococcus_phage	69.7	2.1e-63
AVD43943.1|631460_631682_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
AVD43944.1|631681_631945_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
AVD43945.1|632008_632581_+	manganese catalase family protein	NA	NA	NA	NA	NA
AVD43946.1|633372_634026_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
AVD43947.1|634187_634721_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	49.4	5.9e-34
AVD43948.1|636523_636937_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
AVD43949.1|637010_637547_+	GrpB family protein	NA	NA	NA	NA	NA
AVD43950.1|637707_639282_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
AVD43951.1|639970_640543_-	urea carboxylase-associated family protein	NA	NA	NA	NA	NA
AVD43952.1|640946_641516_+	GrpB family protein	NA	NA	NA	NA	NA
AVD43953.1|641852_643025_-	ATP-binding protein	NA	X5JAC0	Clostridium_phage	25.3	4.0e-14
AVD43954.1|643420_643597_-	hypothetical protein	NA	NA	NA	NA	NA
AVD43955.1|643700_644282_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVD43956.1|644404_645229_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AVD43957.1|645394_646288_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 3
CP026613	Clostridioides difficile strain R1 chromosome, complete genome	4093143	1337325	1400233	4093143	tRNA,plate,portal,transposase,tail,protease	Clostridium_phage(42.86%)	61	NA	NA
AVD44542.1|1337325_1338060_+|protease	Clp protease	protease	NA	NA	NA	NA
AVD44543.1|1338182_1340591_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
AVD44544.1|1340593_1341652_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
AVD44545.1|1341645_1342980_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AVD44546.1|1342966_1343509_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AVD44547.1|1343775_1344822_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	65.8	7.1e-124
AVD44868.1|1344997_1346539_+	ribonuclease Y	NA	NA	NA	NA	NA
AXL65679.1|1346848_1349185_+	diguanylate cyclase	NA	G3MA91	Bacillus_virus	29.8	3.8e-16
AVD44548.1|1350090_1351209_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.0	2.4e-109
AVD44549.1|1351273_1351489_+	hypothetical protein	NA	NA	NA	NA	NA
AVD44550.1|1351540_1353322_+	DNA helicase	NA	NA	NA	NA	NA
AVD44551.1|1353401_1353932_-	signal peptidase I	NA	NA	NA	NA	NA
AVD44552.1|1353971_1354796_-	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
AVD44553.1|1355052_1355964_+	recombinase	NA	NA	NA	NA	NA
AVD44554.1|1356102_1357548_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
AVD44555.1|1357848_1358301_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVD44556.1|1358519_1359716_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AVD44557.1|1360100_1361051_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AVD44558.1|1361171_1361924_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	44.4	1.6e-56
AVD44559.1|1362015_1362792_-	exonuclease	NA	NA	NA	NA	NA
AVD44560.1|1363106_1365005_+	glutamine synthetase	NA	NA	NA	NA	NA
AVD44869.1|1365132_1366254_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
AVD44561.1|1366452_1366785_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVD44562.1|1366771_1367830_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AVD44563.1|1367822_1368893_+	hypothetical protein	NA	NA	NA	NA	NA
AVD44564.1|1368994_1369531_+	hypothetical protein	NA	NA	NA	NA	NA
AVD44565.1|1369650_1370358_+	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	49.8	2.3e-57
AVD44566.1|1370359_1371079_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
AVD44567.1|1371080_1371851_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
AVD44870.1|1371984_1373376_+	sensor histidine kinase	NA	NA	NA	NA	NA
AVD44568.1|1373451_1374273_-	pyridoxamine kinase	NA	NA	NA	NA	NA
AVD44569.1|1374523_1375678_+	amidase domain-containing protein	NA	NA	NA	NA	NA
AVD44570.1|1375860_1376061_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AVD44571.1|1376481_1376910_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AVD44572.1|1377052_1377808_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AVD44573.1|1377928_1378345_-	hypothetical protein	NA	NA	NA	NA	NA
AVD44574.1|1378508_1379015_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.7	1.1e-56
AVD44575.1|1379096_1379417_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	55.5	9.7e-24
AVD44576.1|1379585_1379783_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVD44577.1|1379886_1380327_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	47.9	1.1e-28
AVD44578.1|1380575_1381019_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	2.0e-19
AVD44579.1|1381023_1382088_+|tail	phage tail sheath protein	tail	A0A1V0DZX4	Clostridioides_phage	53.1	5.8e-97
AVD44580.1|1382101_1382530_+|portal	phage portal protein	portal	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AVD44581.1|1382643_1383090_+|portal	phage portal protein	portal	A0A090EUD0	Clostridium_phage	36.0	8.2e-13
AVD44582.1|1383116_1383284_+	hypothetical protein	NA	NA	NA	NA	NA
AVD44583.1|1383283_1385737_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	58.4	1.4e-16
AVD44584.1|1385736_1386159_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
AVD44585.1|1386440_1387970_+	cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.3e-243
AVD44586.1|1387985_1388312_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	92.6	3.9e-52
AVD44587.1|1388311_1388740_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	81.0	3.7e-63
AVD44588.1|1388732_1389785_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFP3	Clostridium_phage	70.4	3.5e-139
AVD44589.1|1389781_1390480_+	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	9.5e-48
AVD44590.1|1390480_1391467_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	7.6e-59
AVD44591.1|1391488_1396666_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	27.2	2.6e-81
AVD44592.1|1396682_1397036_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	5.5e-12
AVD44593.1|1397298_1397559_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AVD44594.1|1397769_1398225_-	hypothetical protein	NA	NA	NA	NA	NA
AVD44595.1|1398452_1398872_-	XRE family transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	35.9	1.6e-05
AVD44596.1|1399167_1399377_+	XRE family transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AVD44597.1|1399396_1399618_+	hypothetical protein	NA	NA	NA	NA	NA
AVD44598.1|1399834_1400233_-	helix-turn-helix domain-containing protein	NA	A0A059T669	Listeria_phage	34.5	1.0e-06
>prophage 4
CP026613	Clostridioides difficile strain R1 chromosome, complete genome	4093143	1478693	1488422	4093143		Pandoravirus(37.5%)	11	NA	NA
AVD44658.1|1478693_1479278_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	53.2	2.5e-57
AVD44659.1|1479270_1480629_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.6	7.8e-38
AVD44660.1|1480618_1481362_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AVD44661.1|1481395_1482097_+	hypothetical protein	NA	NA	NA	NA	NA
AVD44662.1|1482122_1482695_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	2.3e-44
AVD44663.1|1482748_1483552_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	30.0	1.1e-23
AVD44664.1|1483562_1483928_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AVD44665.1|1483920_1484427_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	S4VNV0	Pandoravirus	33.9	4.2e-13
AVD44666.1|1484407_1485193_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
AVD44667.1|1485447_1487238_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
AVD44668.1|1487249_1488422_+	RNA polymerase sigma factor RpoD	NA	M4SMP8	Cyanophage	36.8	9.7e-37
>prophage 5
CP026613	Clostridioides difficile strain R1 chromosome, complete genome	4093143	1581346	1601920	4093143	integrase	Streptococcus_phage(94.44%)	24	1578539:1578554	1605798:1605813
1578539:1578554	attL	TTCACTTGCTTGTCCT	NA	NA	NA	NA
AVD44748.1|1581346_1582114_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	3.4e-30
AVD44749.1|1582100_1584038_+	ABC transporter permease	NA	NA	NA	NA	NA
AVD44750.1|1584253_1584373_+	hypothetical protein	NA	NA	NA	NA	NA
AVD44751.1|1584395_1584710_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
AVD44752.1|1584725_1585112_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
AVD44753.1|1585140_1586526_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
AVD44754.1|1586528_1586681_+	conjugal transfer protein	NA	NA	NA	NA	NA
AVD44755.1|1586703_1587909_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
AVD44756.1|1587951_1588173_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
AVD44757.1|1588289_1588787_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
AVD44758.1|1588761_1589268_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
AVD44759.1|1589251_1591699_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
AVD41375.1|1593877_1594879_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
AVD41376.1|1594875_1595808_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
AVD41377.1|1596082_1596169_+	tetracycline resistance protein	NA	NA	NA	NA	NA
AVD41378.1|1596184_1598104_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.4	0.0e+00
AVD41379.1|1598204_1598390_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	67.9	3.9e-17
AVD41380.1|1598449_1598803_-	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
AVD44760.1|1599007_1599079_+	hypothetical protein	NA	NA	NA	NA	NA
AVD41381.1|1599307_1599730_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
AVD41382.1|1599726_1599957_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
AVD41383.1|1600182_1600434_-	hypothetical protein	NA	NA	NA	NA	NA
AVD41384.1|1600417_1600621_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
AVD41385.1|1600702_1601920_+|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
1605798:1605813	attR	AGGACAAGCAAGTGAA	NA	NA	NA	NA
>prophage 6
CP026613	Clostridioides difficile strain R1 chromosome, complete genome	4093143	2727266	2748561	4093143	integrase	Streptococcus_phage(90.0%)	25	2726235:2726250	2746444:2746459
2726235:2726250	attL	AAAATATTTTTTATAA	NA	NA	NA	NA
AVD42345.1|2727266_2727581_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
AVD42346.1|2727596_2727983_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
AVD42347.1|2728011_2729397_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
AVD42348.1|2729399_2729552_+	conjugal transfer protein	NA	NA	NA	NA	NA
AVD42349.1|2729574_2730780_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
AVD42350.1|2730822_2731044_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
AVD42351.1|2731160_2731658_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
AVD42352.1|2731632_2732139_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
AVD42353.1|2732122_2734570_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
AVD42354.1|2734572_2736750_+	YtxH domain-containing protein	NA	A0A1S5SF30	Streptococcus_phage	99.2	0.0e+00
AVD42355.1|2736746_2737748_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
AVD42356.1|2737744_2738677_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
AVD42357.1|2738951_2739038_+	tetracycline resistance protein	NA	NA	NA	NA	NA
AVD42358.1|2739053_2740973_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.4	0.0e+00
AVD42359.1|2741073_2741259_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	67.9	3.9e-17
AVD42360.1|2741318_2741672_-	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
AVD44802.1|2741876_2741948_+	hypothetical protein	NA	NA	NA	NA	NA
AVD42361.1|2742176_2742599_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
AVD42362.1|2742595_2742826_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
AVD42363.1|2743051_2743303_-	hypothetical protein	NA	NA	NA	NA	NA
AVD42364.1|2743286_2743490_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
AVD42365.1|2743571_2744789_+|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
AVD42366.1|2745093_2746203_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	33.3	1.1e-21
AVD42367.1|2746232_2747000_+	PucR family transcriptional regulator	NA	NA	NA	NA	NA
2746444:2746459	attR	AAAATATTTTTTATAA	NA	NA	NA	NA
AVD42368.1|2747187_2748561_-	MFS transporter	NA	S4TR35	Salmonella_phage	22.0	2.5e-07
>prophage 7
CP026613	Clostridioides difficile strain R1 chromosome, complete genome	4093143	3130147	3139099	4093143		Catovirus(50.0%)	8	NA	NA
AVD42670.1|3130147_3132061_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
AVD42671.1|3132143_3133235_-	glycosyltransferase family 4 protein	NA	A0A1V0SL50	Klosneuvirus	26.2	1.0e-16
AVD44809.1|3133240_3134536_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	43.4	1.4e-89
AVD42672.1|3134561_3135314_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	3.5e-16
AVD42673.1|3135361_3136270_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AVD42674.1|3136291_3137041_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
AVD42675.1|3137069_3138260_-	glycerophosphotransferase	NA	NA	NA	NA	NA
AVD42676.1|3138259_3139099_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	25.9	1.8e-05
