The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026704	Providencia stuartii strain AR_0026	4368167	598859	707657	4368167	integrase,tRNA,transposase,holin	Escherichia_phage(18.52%)	91	629439:629498	707661:707678
AVE40836.1|598859_599579_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
AVE40837.1|599854_600919_+	adenine DNA glycosylase	NA	NA	NA	NA	NA
AVE40838.1|600918_601188_+	oxidative damage protection protein	NA	NA	NA	NA	NA
AVE44057.1|601241_602315_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA	NA
AVE40839.1|602758_603976_+|integrase	integrase	integrase	Q7M297	Enterobacteria_phage	57.3	5.0e-129
AVE40840.1|604095_604380_+	hypothetical protein	NA	NA	NA	NA	NA
AVE40841.1|604705_605290_+	antirestriction protein ArdA	NA	A0A0A8WIV6	Clostridium_phage	40.6	1.9e-25
AVE40842.1|605556_605790_-	hypothetical protein	NA	NA	NA	NA	NA
AVE40843.1|605838_607143_-	hypothetical protein	NA	NA	NA	NA	NA
AVE40844.1|607152_609225_-	ATP-dependent helicase	NA	NA	NA	NA	NA
AVE40845.1|609262_611113_-	hypothetical protein	NA	NA	NA	NA	NA
AVE40846.1|611112_612873_-	class I SAM-dependent DNA methyltransferase	NA	Q6NE04	Leptospira_phage	40.7	4.9e-125
AVE44058.1|612949_615535_-	restriction endonuclease	NA	NA	NA	NA	NA
AVE40847.1|615537_618261_-	DEAD/DEAH box helicase	NA	A0A2H4J643	uncultured_Caudovirales_phage	22.7	4.1e-14
AVE40848.1|618264_621111_-	DNA methylase	NA	NA	NA	NA	NA
AVE40849.1|621110_621698_-	DUF3780 domain-containing protein	NA	A0A1P8DTE9	Proteus_phage	41.0	2.3e-26
AVE40850.1|621694_624763_-	hypothetical protein	NA	NA	NA	NA	NA
AVE40851.1|624787_624991_-	transcriptional regulator	NA	A0A1B1IUF9	uncultured_Mediterranean_phage	73.2	1.2e-19
AVE40852.1|625217_625670_-	hypothetical protein	NA	NA	NA	NA	NA
AVE40853.1|625650_627654_-	hypothetical protein	NA	NA	NA	NA	NA
AVE40854.1|627630_628335_+|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	82.3	1.7e-113
AVE40855.1|628957_629296_-	hypothetical protein	NA	NA	NA	NA	NA
AVE40856.1|629297_629444_-	filamentous hemagglutinin	NA	NA	NA	NA	NA
629439:629498	attL	GGTCATGTATTCAATCCGGTGATTAACCTGTAATATAGGGTAATTTATCGGAGAATATTC	NA	NA	NA	NA
AVE40857.1|629498_630195_+|transposase	IS1 family transposase	transposase	A0A0U2RK18	Escherichia_phage	48.9	1.8e-62
629439:629498	attL	GGTCATGTATTCAATCCGGTGATTAACCTGTAATATAGGGTAATTTATCGGAGAATATTC	NA	NA	NA	NA
AVE40858.1|630863_631472_-	sulfoxide reductase heme-binding subunit YedZ	NA	NA	NA	NA	NA
AVE40859.1|631471_632479_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
AVE40860.1|632567_633932_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	24.9	2.1e-14
AVE40861.1|633928_634600_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	37.2	3.5e-31
AVE40862.1|635194_635999_+|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AVE40863.1|636013_636463_+|integrase	integrase	integrase	A0A2L1IV36	Escherichia_phage	55.9	9.1e-44
AVE40864.1|638218_638533_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVE40865.1|638677_639375_-|transposase	IS1 family transposase	transposase	A0A0U2RK18	Escherichia_phage	48.9	1.8e-62
AVE40866.1|639865_641039_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	69.3	1.7e-121
639376:640162	attR	GAATATTCTCCGATAAATTACCCTATATTACAGGTTAATCACCGGATTGAATACATGACCATATATTGGCGTAAGCCAACAGCAAATTTCCCGTTATGAATCAGGAGTTAACCATATTAACATTGATTTTTTATCTCAATTATCTGAGTTATTTAAAGTACCAATTCAAGTTTTTTTAATAGAAGACTAAATATATTTTTTAATTATTAAAAATTCAATTTCATTTTTTGTATTTGATTTTTTCCAGTTCATTGCAAATAGAGTGTCTGCAATGAGCAATGAAAACTGACACTCATTCTTTACTTAACAATAAACATAGGACTTTATATTCATGAAAATGAAATCTATTGCAATGGCAACTTTTATGGCTCTGGGATTAGCTTCTGCAGCAAACGCAGCAGATCAAGGCCACGGTAATGAAGTGGCATAGTTAATTTGGCCACCTGACTAGAGGTGATATTCTTGCCTCAATAACATCACAGGTGAGCACATGGTTAAGCAATATTCAGCAGAGTTTAAACTCGAAGCCGCTAAAATGGTGGTTGACCATCATTACTCCGTGGCTAAAGCCGCACAGGCAATGGGCGTAAGCCTTGCCGCACTTAATCGTTGGGTTAAAAAATTGCGATTAGAACGACAAGGTAAAACACCGACGGGATTTCCGCTTACTCCCGAACAGATTGAGCTTCGAGAGATGAAAAAAAAGATACAACGTCTTGAAATGGAAAACGAAATTCTAAAAAAGGCTACGGCGCTCTTAATGTCGGACTCACTGAAGGATTCGCGA	NA	NA	NA	NA
AVE40867.1|641222_642158_-	hypothetical protein	NA	NA	NA	NA	NA
639376:640162	attR	GAATATTCTCCGATAAATTACCCTATATTACAGGTTAATCACCGGATTGAATACATGACCATATATTGGCGTAAGCCAACAGCAAATTTCCCGTTATGAATCAGGAGTTAACCATATTAACATTGATTTTTTATCTCAATTATCTGAGTTATTTAAAGTACCAATTCAAGTTTTTTTAATAGAAGACTAAATATATTTTTTAATTATTAAAAATTCAATTTCATTTTTTGTATTTGATTTTTTCCAGTTCATTGCAAATAGAGTGTCTGCAATGAGCAATGAAAACTGACACTCATTCTTTACTTAACAATAAACATAGGACTTTATATTCATGAAAATGAAATCTATTGCAATGGCAACTTTTATGGCTCTGGGATTAGCTTCTGCAGCAAACGCAGCAGATCAAGGCCACGGTAATGAAGTGGCATAGTTAATTTGGCCACCTGACTAGAGGTGATATTCTTGCCTCAATAACATCACAGGTGAGCACATGGTTAAGCAATATTCAGCAGAGTTTAAACTCGAAGCCGCTAAAATGGTGGTTGACCATCATTACTCCGTGGCTAAAGCCGCACAGGCAATGGGCGTAAGCCTTGCCGCACTTAATCGTTGGGTTAAAAAATTGCGATTAGAACGACAAGGTAAAACACCGACGGGATTTCCGCTTACTCCCGAACAGATTGAGCTTCGAGAGATGAAAAAAAAGATACAACGTCTTGAAATGGAAAACGAAATTCTAAAAAAGGCTACGGCGCTCTTAATGTCGGACTCACTGAAGGATTCGCGA	NA	NA	NA	NA
AVE44059.1|642154_644467_-	hypothetical protein	NA	NA	NA	NA	NA
AVE40868.1|646637_647927_-	MFS transporter	NA	NA	NA	NA	NA
AVE40869.1|648017_649487_-	xylulokinase	NA	NA	NA	NA	NA
AVE40870.1|649498_650887_-	D-arabinitol 4-dehydrogenase	NA	NA	NA	NA	NA
AVE40871.1|651064_652015_+	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AVE40872.1|652681_654307_+	SAM-dependent methyltransferase	NA	A0A2I6UHU5	Bacillus_phage	29.5	4.5e-16
AVE44060.1|654365_657362_-	adenine methyltransferase	NA	A0A1V0SG34	Hokovirus	23.1	4.6e-06
AVE40873.1|657527_660119_-	hypothetical protein	NA	A0A1B1IUG5	uncultured_Mediterranean_phage	24.0	7.7e-10
AVE40874.1|660764_660995_-	hypothetical protein	NA	A0A1V0E8E5	Vibrio_phage	42.9	3.8e-06
AVE40875.1|661095_661689_-	inovirus Gp2 family protein	NA	NA	NA	NA	NA
AVE40876.1|662138_663287_-	hypothetical protein	NA	NA	NA	NA	NA
AVE40877.1|664274_665264_+	hypothetical protein	NA	NA	NA	NA	NA
AVE40878.1|665479_666211_+	DUF3944 domain-containing protein	NA	NA	NA	NA	NA
AVE40879.1|666257_666947_+	transcriptional regulator	NA	NA	NA	NA	NA
AVE40880.1|666963_667461_+	hypothetical protein	NA	NA	NA	NA	NA
AVE40881.1|667464_668352_+	hypothetical protein	NA	NA	NA	NA	NA
AVE40882.1|668496_668679_+	hypothetical protein	NA	NA	NA	NA	NA
AVE44061.1|668762_669176_+	hypothetical protein	NA	NA	NA	NA	NA
AVE40883.1|669416_669851_+	antirestriction protein	NA	NA	NA	NA	NA
AVE40884.1|669947_670769_+	DUF945 domain-containing protein	NA	K4F5L3	Cronobacter_phage	36.5	3.4e-44
AVE40885.1|670786_671269_+	hypothetical protein	NA	NA	NA	NA	NA
AVE40886.1|671277_671499_+	DUF987 domain-containing protein	NA	NA	NA	NA	NA
AVE40887.1|672216_673482_+|integrase	integrase	integrase	Q7M297	Enterobacteria_phage	38.6	2.7e-77
AVE40888.1|673830_674073_-	hypothetical protein	NA	A4JWV5	Burkholderia_virus	50.0	1.8e-06
AVE40889.1|673999_674724_-|transposase	IS1 family transposase	transposase	A0A0U2RK18	Escherichia_phage	47.2	4.1e-62
AVE40890.1|674905_675583_-	hypothetical protein	NA	NA	NA	NA	NA
AVE40891.1|675598_676000_-	hypothetical protein	NA	NA	NA	NA	NA
AVE40892.1|676046_677155_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	38.8	2.3e-40
AVE40893.1|677201_677519_-	hypothetical protein	NA	NA	NA	NA	NA
AVE40894.1|677543_677987_-	hypothetical protein	NA	NA	NA	NA	NA
AVE40895.1|678203_679493_-	hypothetical protein	NA	NA	NA	NA	NA
AVE40896.1|679489_679867_-	hypothetical protein	NA	NA	NA	NA	NA
AVE40897.1|679863_680670_-	DUF4123 domain-containing protein	NA	NA	NA	NA	NA
AVE40898.1|683244_683985_+	glycerophosphodiester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	25.4	1.2e-11
AVE40899.1|684189_684855_-	heme exporter protein CcmB	NA	NA	NA	NA	NA
AVE40900.1|684854_685472_-	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	A0A2H4PQG7	Staphylococcus_phage	26.5	1.1e-12
AVE40901.1|685487_686663_-	potassium channel protein	NA	NA	NA	NA	NA
AVE40902.1|687033_688743_+	phosphoethanolamine transferase CptA	NA	NA	NA	NA	NA
AVE40903.1|688820_689474_-	DUF421 domain-containing protein	NA	NA	NA	NA	NA
AVE40904.1|689771_690449_+	hypothetical protein	NA	NA	NA	NA	NA
AVE40905.1|690629_691067_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AVE40906.1|691139_691406_+	DksA/TraR family C4-type zinc finger protein	NA	K4F9U1	Cronobacter_phage	58.0	9.2e-20
AVE40907.1|691874_693881_+|holin	high-affinity choline transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	24.3	5.4e-19
AVE40908.1|693959_694412_-	homoprotocatechuate degradation operon regulator HpaR	NA	NA	NA	NA	NA
AVE40909.1|694820_695450_+	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase	NA	NA	NA	NA	NA
AVE40910.1|695449_696217_+	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase	NA	NA	NA	NA	NA
AVE40911.1|696216_697683_+	5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AVE40912.1|697817_698699_+	3,4-dihydroxyphenylacetate 2,3-dioxygenase	NA	NA	NA	NA	NA
AVE40913.1|698708_699089_+	5-carboxymethyl-2-hydroxymuconate delta-isomerase	NA	NA	NA	NA	NA
AVE44062.1|699137_700325_+	Bcr/CflA family drug resistance efflux transporter	NA	S4TR35	Salmonella_phage	25.7	1.9e-19
AVE40914.1|700321_701788_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AVE40915.1|701890_702694_+	2-oxo-hepta-3-ene-1,7-dioic acid hydratase	NA	NA	NA	NA	NA
AVE40916.1|702704_703511_+	4-hydroxy-2-oxoheptanedioate aldolase	NA	NA	NA	NA	NA
AVE40917.1|703834_705205_+	4-hydroxyphenylacetate permease	NA	NA	NA	NA	NA
AVE40918.1|705280_706165_+	4-hydroxyphenylacetate catabolism regulatory protein HpaA	NA	NA	NA	NA	NA
AVE40919.1|706624_706960_+	hypothetical protein	NA	NA	NA	NA	NA
AVE40920.1|707000_707657_+|transposase	IS1595-like ISEc75 family transposase	transposase	NA	NA	NA	NA
707661:707678	attR	TTATCTAGGACAGCCCCA	NA	NA	NA	NA
>prophage 2
CP026704	Providencia stuartii strain AR_0026	4368167	1431147	1501597	4368167	plate,transposase	Synechococcus_phage(33.33%)	60	NA	NA
AVE41510.1|1431147_1432185_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AVE41511.1|1432148_1433930_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AVE41512.1|1433931_1434369_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AVE41513.1|1434373_1435852_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
AVE41514.1|1435872_1436370_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AVE41515.1|1437508_1439818_-	glucan 1,4-alpha-glucosidase	NA	NA	NA	NA	NA
AVE41516.1|1439814_1441257_-	glucose-6-phosphate dehydrogenase	NA	M1UG55	Synechococcus_phage	36.4	2.2e-75
AVE41517.1|1441253_1442306_-	6-phosphogluconate dehydrogenase (decarboxylating)	NA	E3SKF4	Synechococcus_phage	49.3	2.0e-86
AVE41518.1|1442302_1443013_-	ROK family protein	NA	NA	NA	NA	NA
AVE41519.1|1443496_1443802_+	acid-resistance protein	NA	NA	NA	NA	NA
AVE41520.1|1443852_1445028_-	MFS transporter	NA	NA	NA	NA	NA
AVE41521.1|1445417_1447463_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	31.8	6.9e-14
AVE41522.1|1447581_1448460_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVE41523.1|1448479_1449412_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AVE41524.1|1450180_1450777_+	hypothetical protein	NA	Q6VZ28	Canarypox_virus	26.2	8.2e-08
AVE41525.1|1451100_1451757_-|transposase	IS1595-like ISEc75 family transposase	transposase	NA	NA	NA	NA
AVE41526.1|1452439_1453990_+	acyl-CoA synthetase FdrA	NA	NA	NA	NA	NA
AVE41527.1|1453989_1455405_+	DUF1116 domain-containing protein	NA	NA	NA	NA	NA
AVE41528.1|1455525_1457088_+	xanthine permease	NA	NA	NA	NA	NA
AVE41529.1|1457159_1458110_+	carbamate kinase	NA	NA	NA	NA	NA
AVE41530.1|1458168_1459545_+	deaminase	NA	NA	NA	NA	NA
AVE41531.1|1460578_1461769_-	mannonate dehydratase	NA	NA	NA	NA	NA
AVE41532.1|1461812_1463123_-	MFS transporter	NA	NA	NA	NA	NA
AVE41533.1|1463339_1464056_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AVE41534.1|1464096_1465497_-	hexose-6-phosphate:phosphate antiporter	NA	NA	NA	NA	NA
AVE41535.1|1465526_1466315_-	inositol monophosphatase	NA	NA	NA	NA	NA
AVE41536.1|1466910_1467165_-	acyl carrier protein	NA	NA	NA	NA	NA
AVE41537.1|1467161_1469297_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41538.1|1469401_1470451_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41539.1|1470454_1471762_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41540.1|1471783_1474030_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AVE41541.1|1474040_1474553_-	type III secretion system translocator chaperone SicA	NA	NA	NA	NA	NA
AVE41542.1|1474667_1475771_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
AVE41543.1|1475783_1476587_-	EscT/YscT/HrcT family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AVE41544.1|1476583_1476856_-	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AVE41545.1|1476870_1477536_-	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AVE41546.1|1477537_1478464_-	type III secretion protein	NA	NA	NA	NA	NA
AVE41547.1|1478466_1479909_-	type III secretion protein	NA	NA	NA	NA	NA
AVE41548.1|1479880_1480336_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41549.1|1480335_1481628_-	FliI/YscN family ATPase	NA	NA	NA	NA	NA
AVE41550.1|1481631_1482039_-	type III secretion system protein	NA	NA	NA	NA	NA
AVE41551.1|1482050_1484120_-	EscV/YscV/HrcV family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AVE41552.1|1484112_1485237_-	YopN family type III secretion system gatekeeper subunit	NA	NA	NA	NA	NA
AVE41553.1|1485227_1486916_-	EscC/YscC/HrcC family type III secretion system outer membrane ring protein	NA	G4WZN6	Enterobacteria_phage	23.6	9.7e-06
AVE41554.1|1486905_1487682_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AVE41555.1|1487878_1489081_+	hypothetical protein	NA	NA	NA	NA	NA
AVE41556.1|1489092_1489434_+	type III secretion apparatus needle protein	NA	NA	NA	NA	NA
AVE41557.1|1489485_1489785_+	virulence associated protein	NA	NA	NA	NA	NA
AVE41558.1|1489788_1490550_+	EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein	NA	NA	NA	NA	NA
AVE41559.1|1490533_1491088_+	hypothetical protein	NA	NA	NA	NA	NA
AVE41560.1|1491065_1491716_+	hypothetical protein	NA	NA	NA	NA	NA
AVE41561.1|1491693_1492194_+	hypothetical protein	NA	NA	NA	NA	NA
AVE41562.1|1492524_1492953_+	hypothetical protein	NA	NA	NA	NA	NA
AVE41563.1|1492970_1493408_+	hypothetical protein	NA	NA	NA	NA	NA
AVE41564.1|1493423_1494941_-	MFS transporter	NA	NA	NA	NA	NA
AVE41565.1|1494942_1496025_-	HlyD family secretion protein	NA	NA	NA	NA	NA
AVE41566.1|1496153_1496783_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AVE41567.1|1497453_1498110_+|transposase	IS1595-like ISEc75 family transposase	transposase	NA	NA	NA	NA
AVE41568.1|1498353_1499094_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AVE41569.1|1500873_1501597_+|transposase	IS1 family transposase	transposase	A0A0U2RK18	Escherichia_phage	47.2	4.1e-62
>prophage 3
CP026704	Providencia stuartii strain AR_0026	4368167	1698641	1762276	4368167	protease,tRNA,transposase	Bacillus_phage(14.29%)	57	NA	NA
AVE41728.1|1698641_1699446_+|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AVE41729.1|1699683_1700664_+	lipopolysaccharide 1,2-glucosyltransferase	NA	NA	NA	NA	NA
AVE41730.1|1700695_1701934_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41731.1|1702154_1702959_+|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AVE41732.1|1703018_1703828_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	A0A127AWE5	Bacillus_phage	35.6	5.5e-23
AVE41733.1|1703830_1704316_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	38.9	1.0e-24
AVE41734.1|1704532_1705810_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AVE41735.1|1706017_1707481_+	glycosyltransferase	NA	NA	NA	NA	NA
AVE41736.1|1707534_1708497_-	lipopolysaccharide heptosyltransferase RfaC	NA	NA	NA	NA	NA
AVE41737.1|1708496_1709543_-	ADP-heptose--LPS heptosyltransferase RfaF	NA	NA	NA	NA	NA
AVE41738.1|1709552_1710491_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SL51	Synechococcus_phage	36.9	8.9e-33
AVE41739.1|1710722_1711919_+	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	28.2	3.4e-37
AVE41740.1|1711942_1712968_+	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	82.7	6.1e-19
AVE41741.1|1713042_1714002_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41742.1|1714028_1715321_-	murein hydrolase activator EnvC	NA	G9BW84	Planktothrix_phage	30.8	1.1e-09
AVE41743.1|1715816_1716254_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AVE41744.1|1716370_1716847_+	protein-export chaperone SecB	NA	NA	NA	NA	NA
AVE41745.1|1716846_1717875_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AVE41746.1|1717898_1718720_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
AVE41747.1|1719411_1719915_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AVE41748.1|1720067_1721096_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	49.8	1.1e-89
AVE41749.1|1721113_1723192_-	tyrosine protein kinase	NA	NA	NA	NA	NA
AVE41750.1|1723225_1723654_-	protein tyrosine phosphatase	NA	NA	NA	NA	NA
AVE44085.1|1723659_1724805_-	polysaccharide export protein Wza	NA	NA	NA	NA	NA
AVE41751.1|1724849_1725797_-	UDP-N-acetylglucosamine 4-epimerase	NA	A0A223FN07	Murmansk_poxvirus	23.3	2.4e-09
AVE41752.1|1725798_1726875_-	glycosyl transferase family 1	NA	NA	NA	NA	NA
AVE41753.1|1726832_1727936_-	glycosyl transferase	NA	NA	NA	NA	NA
AVE41754.1|1728008_1729013_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41755.1|1729633_1730438_+|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AVE41756.1|1730375_1730663_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41757.1|1730765_1731287_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41758.1|1731325_1731772_-	hypothetical protein	NA	A0A1V0SAH6	Catovirus	35.8	8.5e-10
AVE41759.1|1731749_1732874_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA	NA
AVE41760.1|1732877_1734626_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	NA	NA	NA	NA	NA
AVE41761.1|1734622_1735705_-	epimerase	NA	NA	NA	NA	NA
AVE44086.1|1735701_1737231_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AVE41762.1|1738126_1739566_-	capsule assembly Wzi family protein	NA	NA	NA	NA	NA
AVE41763.1|1739995_1741366_-	two-component system sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.4	1.3e-19
AVE41764.1|1741362_1742061_-	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	29.5	4.0e-06
AVE41765.1|1742214_1742751_+	hypothetical protein	NA	NA	NA	NA	NA
AVE41766.1|1743327_1744080_+|protease	metalloprotease	protease	NA	NA	NA	NA
AVE41767.1|1744390_1745032_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AVE41768.1|1745028_1745976_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AVE41769.1|1746520_1747498_+	6-phosphofructokinase	NA	NA	NA	NA	NA
AVE41770.1|1747684_1748686_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVE41771.1|1749653_1750610_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41772.1|1750735_1752616_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AVE41773.1|1753039_1753993_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41774.1|1754462_1755233_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AVE41775.1|1755419_1756034_-	DUF1454 domain-containing protein	NA	NA	NA	NA	NA
AVE41776.1|1756087_1756510_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
AVE41777.1|1756548_1757295_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AVE41778.1|1757697_1758882_+	multidrug transporter EmrD	NA	S4TR35	Salmonella_phage	25.9	6.4e-12
AVE41779.1|1758920_1759304_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41780.1|1759309_1760527_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41781.1|1760624_1761050_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	50.0	4.4e-24
AVE41782.1|1761106_1762276_+|transposase	transposase	transposase	A0A077SLN2	Escherichia_phage	86.6	1.3e-190
>prophage 4
CP026704	Providencia stuartii strain AR_0026	4368167	1767604	1820353	4368167	protease,tRNA,transposase	uncultured_Caudovirales_phage(40.0%)	38	NA	NA
AVE41788.1|1767604_1768939_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A173GFL6	Erwinia_phage	28.0	4.6e-43
AVE41789.1|1768949_1769480_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
AVE41790.1|1769634_1770450_-	cell division protein FtsN	NA	NA	NA	NA	NA
AVE41791.1|1770601_1771630_-	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA	NA
AVE41792.1|1772265_1773285_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AVE41793.1|1774566_1775019_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41794.1|1775323_1775686_-	type IV secretion protein Rhs	NA	A0A2H4JHK7	uncultured_Caudovirales_phage	54.5	3.4e-25
AVE41795.1|1775941_1776811_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41796.1|1777078_1777441_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41797.1|1777437_1782150_-	type IV secretion protein Rhs	NA	A0A2H4JHK7	uncultured_Caudovirales_phage	46.6	1.9e-27
AVE41798.1|1782207_1782627_-	DUF1795 domain-containing protein	NA	NA	NA	NA	NA
AVE41799.1|1782635_1784792_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA	NA
AVE41800.1|1784875_1785394_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
AVE41801.1|1786218_1788417_-	primosomal protein N'	NA	NA	NA	NA	NA
AVE41802.1|1788635_1788851_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
AVE41803.1|1788951_1791129_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AVE41804.1|1791623_1792348_-|transposase	IS1 family transposase	transposase	A0A0U2RK18	Escherichia_phage	46.8	7.0e-62
AVE41805.1|1792518_1793175_+|transposase	IS1595-like ISEc75 family transposase	transposase	NA	NA	NA	NA
AVE41806.1|1794038_1794356_-	met regulon transcriptional regulator MetJ	NA	NA	NA	NA	NA
AVE41807.1|1794670_1795831_+	cystathionine gamma-synthase	NA	NA	NA	NA	NA
AVE41808.1|1795842_1798284_+	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA	NA
AVE41809.1|1798342_1798561_-	hypothetical protein	NA	NA	NA	NA	NA
AVE41810.1|1798677_1801317_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AVE41811.1|1801716_1802310_+	LemA family protein	NA	NA	NA	NA	NA
AVE41812.1|1802306_1803425_+	hypothetical protein	NA	NA	NA	NA	NA
AVE41813.1|1803483_1804368_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
AVE41814.1|1804596_1805751_-	acetylornithine deacetylase	NA	NA	NA	NA	NA
AVE41815.1|1805852_1806857_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AVE41816.1|1806887_1807664_+	acetylglutamate kinase	NA	NA	NA	NA	NA
AVE41817.1|1807742_1808963_+	argininosuccinate synthase	NA	NA	NA	NA	NA
AVE41818.1|1809041_1810418_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AVE41819.1|1810908_1811241_-	pilus assembly protein	NA	NA	NA	NA	NA
AVE41820.1|1812775_1813684_+	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA	NA
AVE41821.1|1813743_1815141_-	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA	NA
AVE41822.1|1815523_1816180_+	HTH-type transcriptional repressor FabR	NA	NA	NA	NA	NA
AVE41823.1|1816194_1816584_+	DUF1422 domain-containing protein	NA	NA	NA	NA	NA
AVE41824.1|1816795_1817881_-|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
AVE41825.1|1819629_1820353_+|transposase	IS1 family transposase	transposase	A0A0U2RK18	Escherichia_phage	46.8	7.0e-62
>prophage 5
CP026704	Providencia stuartii strain AR_0026	4368167	2243124	2295150	4368167	protease,tRNA,transposase	uncultured_Mediterranean_phage(22.22%)	54	NA	NA
AVE42189.1|2243124_2243930_-|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AVE42190.1|2244635_2245883_+	tryptophan permease	NA	NA	NA	NA	NA
AVE42191.1|2246023_2246320_-	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA	NA
AVE44101.1|2246344_2247310_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AVE42192.1|2247627_2248512_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
AVE42193.1|2248529_2249993_-	sodium/panthothenate symporter	NA	NA	NA	NA	NA
AVE42194.1|2249982_2250225_-	hypothetical protein	NA	NA	NA	NA	NA
AVE42195.1|2250367_2250670_-	DUF202 domain-containing protein	NA	NA	NA	NA	NA
AVE42196.1|2250678_2251035_-	DUF202 domain-containing protein	NA	NA	NA	NA	NA
AVE42197.1|2251174_2252521_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AVE42198.1|2252533_2253010_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AVE42199.1|2253049_2253493_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
AVE42200.1|2253724_2254708_-	oxidoreductase	NA	NA	NA	NA	NA
AVE42201.1|2255340_2256384_+	rod shape-determining protein	NA	F2Y0P3	Organic_Lake_phycodnavirus	22.7	2.7e-06
AVE42202.1|2256471_2257440_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
AVE42203.1|2257479_2257968_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
AVE42204.1|2258008_2258596_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AVE42205.1|2258592_2260062_+	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
AVE42206.1|2260084_2263879_+	DUF3971 domain-containing protein	NA	NA	NA	NA	NA
AVE42207.1|2263878_2264733_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
AVE42208.1|2264738_2266184_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
AVE42209.1|2266198_2266684_+	ribonuclease	NA	NA	NA	NA	NA
AVE42210.1|2266696_2266984_+	ribonuclease inhibitor	NA	NA	NA	NA	NA
AVE44102.1|2267073_2267640_+	serine hydrolase family protein	NA	NA	NA	NA	NA
AVE42211.1|2267681_2269265_-	hypothetical protein	NA	NA	NA	NA	NA
AVE42212.1|2269438_2269771_-	phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AVE42213.1|2271874_2272420_-	DUF615 domain-containing protein	NA	NA	NA	NA	NA
AVE42214.1|2272593_2273934_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
AVE42215.1|2274130_2274541_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA	NA
AVE42216.1|2274729_2275002_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AVE42217.1|2275001_2275853_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	27.9	1.4e-05
AVE42218.1|2276021_2276489_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
AVE42219.1|2276749_2277037_-	ribosome hibernation promoting factor	NA	NA	NA	NA	NA
AVE42220.1|2277059_2278505_-	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AVE42221.1|2278550_2279276_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	2.2e-23
AVE42222.1|2279281_2279830_-	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA	NA
AVE42223.1|2279813_2280407_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AVE42224.1|2280422_2280983_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	NA	A0A140XBD6	Dickeya_phage	78.4	9.9e-56
AVE42225.1|2280995_2281964_-	arabinose-5-phosphate isomerase KdsD	NA	A0A2P0VNK5	Tetraselmis_virus	30.5	8.3e-34
AVE42226.1|2282447_2283251_+	phospholipid ABC transporter ATP-binding protein MlaF	NA	G3M9Y6	Bacillus_virus	32.2	6.7e-21
AVE42227.1|2283257_2284040_+	ABC transporter permease	NA	NA	NA	NA	NA
AVE42228.1|2284043_2284553_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
AVE42229.1|2284587_2285214_+	phospholipid-binding protein MlaC	NA	NA	NA	NA	NA
AVE42230.1|2285218_2285509_+	STAS domain-containing protein	NA	NA	NA	NA	NA
AVE42231.1|2285649_2285904_+	BolA family transcriptional regulator	NA	NA	NA	NA	NA
AVE42232.1|2286061_2287324_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AVE42233.1|2287418_2288483_-|protease	serine endoprotease DegS	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	30.4	2.3e-08
AVE42234.1|2288670_2290068_-|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	27.9	4.7e-22
AVE42235.1|2290501_2290906_-	cytochrome D ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AVE42236.1|2291127_2292261_+	cell division protein ZapE	NA	NA	NA	NA	NA
AVE42237.1|2292537_2292966_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
AVE42238.1|2292981_2293374_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
AVE42239.1|2294008_2294650_+	stringent starvation protein A	NA	NA	NA	NA	NA
AVE42240.1|2294655_2295150_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	44.3	5.9e-28
>prophage 6
CP026704	Providencia stuartii strain AR_0026	4368167	2331991	2372563	4368167	integrase,transposase	Vibrio_phage(16.67%)	36	2333987:2334026	2372564:2372603
AVE42271.1|2331991_2332648_-|transposase	IS1595-like ISEc75 family transposase	transposase	NA	NA	NA	NA
AVE42272.1|2332785_2333382_+	N-acetyltransferase	NA	NA	NA	NA	NA
2333987:2334026	attL	CCTAAAAATGGTATGCCTATAAGGTATTAATGAGGTGATT	NA	NA	NA	NA
AVE42273.1|2334026_2335286_+|integrase	integrase	integrase	A0A1V0E8G8	Vibrio_phage	44.7	1.6e-98
AVE42274.1|2335282_2336167_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42275.1|2336445_2336766_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AVE44103.1|2336771_2337116_+	IS66 family insertion sequence hypothetical protein	NA	S5VXZ8	Leptospira_phage	42.2	4.0e-15
AVE44104.1|2337175_2338705_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	35.1	2.9e-57
AVE42276.1|2338719_2338908_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42277.1|2338942_2339749_+	antA/AntB antirepressor family protein	NA	A0A088CBR4	Shigella_phage	38.1	7.6e-17
AVE42278.1|2339745_2340381_+	hypothetical protein	NA	A0A1W6JPK3	Morganella_phage	51.6	1.9e-31
AVE42279.1|2340373_2340712_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42280.1|2340708_2341752_+	topoisomerase	NA	Q8LTT9	Enterobacteria_phage	31.1	7.6e-17
AVE42281.1|2341735_2343601_+	hypothetical protein	NA	A0A1B0VP75	Pseudomonas_phage	36.2	5.0e-96
AVE42282.1|2344262_2344601_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42283.1|2344652_2344913_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42284.1|2345144_2345624_-	hypothetical protein	NA	A0A2D1GNW5	Pseudomonas_phage	39.3	1.0e-16
AVE42285.1|2346234_2347140_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42286.1|2347737_2348406_-	DUF1275 domain-containing protein	NA	NA	NA	NA	NA
AVE42287.1|2348558_2350352_-	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
AVE42288.1|2350387_2351833_-	class II fumarate hydratase	NA	NA	NA	NA	NA
AVE42289.1|2352481_2352715_-	hypothetical protein	NA	NA	NA	NA	NA
AVE42290.1|2353666_2354191_+	DNA-binding protein	NA	NA	NA	NA	NA
AVE42291.1|2354183_2354477_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42292.1|2354665_2356147_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
AVE42293.1|2356164_2358081_-	PTS beta-glucoside transporter subunit EIIBCA	NA	NA	NA	NA	NA
AVE42294.1|2358783_2359626_+	antiterminator Bgl	NA	NA	NA	NA	NA
AVE44105.1|2359729_2360563_+	sugar-phosphatase	NA	NA	NA	NA	NA
AVE42295.1|2360655_2361834_-	anaerobic sulfatase maturase	NA	NA	NA	NA	NA
AVE42296.1|2361866_2362748_-	5'/3'-nucleotidase SurE	NA	NA	NA	NA	NA
AVE42297.1|2362774_2364118_-	hypothetical protein	NA	NA	NA	NA	NA
AVE44106.1|2367090_2368620_-|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	34.9	6.4e-57
AVE44107.1|2368679_2369024_-	IS66 family insertion sequence hypothetical protein	NA	S5VXZ8	Leptospira_phage	42.2	4.0e-15
AVE42298.1|2369029_2369350_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AVE42299.1|2369628_2370417_-	hypothetical protein	NA	NA	NA	NA	NA
AVE42300.1|2370471_2371196_-|transposase	IS1 family transposase	transposase	A0A0U2RK18	Escherichia_phage	46.8	7.0e-62
AVE42301.1|2371303_2372563_-|integrase	integrase	integrase	A0A1V0E8G8	Vibrio_phage	44.7	1.6e-98
2372564:2372603	attR	AATCACCTCATTAATACCTTATAGGCATACCATTTTTAGG	NA	NA	NA	NA
>prophage 7
CP026704	Providencia stuartii strain AR_0026	4368167	2520182	2529067	4368167		Vibrio_phage(22.22%)	16	NA	NA
AVE44114.1|2520182_2520668_-	endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	49.0	4.4e-28
AVE42421.1|2522288_2522498_-	hypothetical protein	NA	NA	NA	NA	NA
AVE42422.1|2522649_2522892_-	hypothetical protein	NA	NA	NA	NA	NA
AVE42423.1|2522891_2523188_-	hypothetical protein	NA	NA	NA	NA	NA
AVE42424.1|2523190_2523472_-	hypothetical protein	NA	A0A1P8DTG9	Proteus_phage	80.4	5.5e-39
AVE42425.1|2523520_2523814_-	hypothetical protein	NA	NA	NA	NA	NA
AVE42426.1|2523894_2524503_-	hypothetical protein	NA	A0A2I7QYL6	Vibrio_phage	65.2	2.5e-76
AVE42427.1|2524578_2525055_-	single-stranded DNA-binding protein	NA	A0A0A0P1Q9	Enterobacteria_phage	81.7	3.9e-53
AVE42428.1|2525054_2525690_-	exonuclease	NA	A0A0S2SY31	Pseudomonas_phage	55.8	1.2e-52
AVE42429.1|2525649_2526384_-	phage recombination protein Bet	NA	A0A1I9LJN0	Stx_converting_phage	67.6	1.1e-65
AVE42430.1|2526398_2526614_-	hypothetical protein	NA	NA	NA	NA	NA
AVE44115.1|2526610_2527066_-	SAM-dependent methyltransferase	NA	A0A1W6JP48	Morganella_phage	74.5	2.8e-64
AVE42431.1|2527080_2527353_-	hypothetical protein	NA	NA	NA	NA	NA
AVE42432.1|2527604_2528546_-	cell envelope biogenesis protein TolA	NA	A0A2I7QK72	Vibrio_phage	47.3	2.3e-20
AVE42433.1|2528610_2528862_-	hypothetical protein	NA	NA	NA	NA	NA
AVE42434.1|2528863_2529067_-	hypothetical protein	NA	B5WZV1	Pseudomonas_phage	50.0	8.9e-07
>prophage 8
CP026704	Providencia stuartii strain AR_0026	4368167	2532900	2561220	4368167	lysis,coat,terminase,transposase,head,holin	Acinetobacter_phage(20.83%)	46	NA	NA
AVE42441.1|2532900_2533242_-	DUF3024 domain-containing protein	NA	A0A1W6JP12	Morganella_phage	59.3	1.8e-36
AVE44116.1|2533518_2534202_-	phage repressor	NA	A0A1P8DTH0	Proteus_phage	77.5	1.4e-104
AVE42442.1|2534285_2534495_+	XRE family transcriptional regulator	NA	A0A1P8DTF8	Proteus_phage	79.7	2.1e-27
AVE42443.1|2534606_2534954_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42444.1|2535041_2535401_+	hypothetical protein	NA	A0A088C4S1	Shewanella_sp._phage	40.3	9.3e-07
AVE42445.1|2535660_2536095_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42446.1|2536097_2537735_+	ATP-dependent helicase	NA	A0A0N7KZV6	Escherichia_phage	68.5	1.1e-208
AVE42447.1|2537697_2538654_+	DNA primase	NA	A0A286N2Q0	Klebsiella_phage	55.6	1.8e-102
AVE42448.1|2538680_2538929_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42449.1|2538979_2539192_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42450.1|2539145_2539418_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42451.1|2539534_2539753_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42452.1|2539766_2540213_+	protein ninB	NA	E5AGF7	Erwinia_phage	56.6	6.3e-37
AVE42453.1|2540233_2540575_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42454.1|2540571_2540784_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42455.1|2540852_2541503_+	NinG family protein	NA	A0A1W6JNX3	Morganella_phage	83.9	8.4e-91
AVE42456.1|2541495_2542164_+	HNH endonuclease	NA	A0A2I7QND8	Vibrio_phage	46.4	4.7e-36
AVE42457.1|2542153_2542369_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42458.1|2542365_2543184_+	antitermination protein	NA	M9NZB0	Enterobacteria_phage	47.2	2.3e-61
AVE42459.1|2543673_2543886_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42460.1|2543957_2544206_+	hypothetical protein	NA	NA	NA	NA	NA
AVE44117.1|2544392_2544584_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42461.1|2544587_2544830_-	hypothetical protein	NA	NA	NA	NA	NA
AVE42462.1|2544988_2545306_+|holin	phage holin, lambda family	holin	A0A1P8DTE4	Proteus_phage	58.1	1.2e-29
AVE42463.1|2545298_2545715_+	structural protein	NA	A0A0A1IX72	Pseudomonas_phage	57.5	2.0e-37
AVE42464.1|2545711_2546164_+|lysis	lysis protein	lysis	A0A2H4JHL8	uncultured_Caudovirales_phage	45.5	6.2e-16
AVE42465.1|2546165_2546399_-	HEAT repeat domain-containing protein	NA	NA	NA	NA	NA
AVE44118.1|2547193_2547574_+	hypothetical protein	NA	Q9B021	Phage_GMSE-1	74.1	2.2e-14
AVE42466.1|2547805_2548234_+	hypothetical protein	NA	A0A068CGC1	Acinetobacter_phage	60.9	2.9e-31
AVE42467.1|2548214_2549456_+|terminase	PBSX family phage terminase large subunit	terminase	H6WRS9	Salmonella_phage	78.1	5.2e-190
AVE42468.1|2549465_2550833_+	hypothetical protein	NA	A0A0P0IDW1	Acinetobacter_phage	67.7	1.0e-178
AVE42469.1|2550813_2551923_+|head	phage head morphogenesis protein	head	A0A0D4DBL9	Acinetobacter_phage	54.1	9.9e-108
AVE42470.1|2552289_2553012_+	hypothetical protein	NA	A0A0P0J090	Acinetobacter_phage	55.7	8.0e-66
AVE42471.1|2553015_2553993_+|coat	phage coat protein	coat	A0A2H4JIE6	uncultured_Caudovirales_phage	73.8	4.6e-141
AVE42472.1|2554031_2554313_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42473.1|2554318_2554702_+	hypothetical protein	NA	A0A0P0IVQ3	Acinetobacter_phage	54.3	3.4e-31
AVE42474.1|2554703_2555066_+	glutamate 5-kinase	NA	A0A0R6PH70	Moraxella_phage	41.5	2.5e-15
AVE42475.1|2555065_2555452_+	hypothetical protein	NA	A0A059VF88	Pseudomonas_phage	41.9	1.8e-19
AVE42476.1|2555448_2555844_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA	NA
AVE42477.1|2555855_2556791_+	hypothetical protein	NA	A0A059VG08	Pseudomonas_phage	43.1	2.5e-59
AVE42478.1|2556845_2557280_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42479.1|2557636_2557729_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42480.1|2557918_2558098_+	hypothetical protein	NA	NA	NA	NA	NA
AVE44119.1|2558110_2558590_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
AVE42481.1|2558856_2560059_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42482.1|2560563_2561220_-|transposase	IS1595-like ISEc75 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP026704	Providencia stuartii strain AR_0026	4368167	2566818	2575983	4368167	tail	Salmonella_phage(33.33%)	7	NA	NA
AVE42485.1|2566818_2567415_+	hypothetical protein	NA	S4TSP7	Salmonella_phage	54.6	3.3e-57
AVE42486.1|2567414_2567999_+	hypothetical protein	NA	S4TND4	Salmonella_phage	50.8	1.9e-49
AVE42487.1|2568064_2568463_+	hypothetical protein	NA	A0A2H4IYI8	uncultured_Caudovirales_phage	50.8	1.4e-35
AVE42488.1|2568463_2572795_+|tail	phage tail protein	tail	Q7Y3Z3	Yersinia_phage	49.8	4.9e-195
AVE42489.1|2572860_2574315_+	hypothetical protein	NA	A0A1W6JNW0	Morganella_phage	30.7	5.7e-55
AVE42490.1|2574392_2574653_-	hypothetical protein	NA	NA	NA	NA	NA
AVE42491.1|2575137_2575983_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	39.1	8.5e-43
>prophage 10
CP026704	Providencia stuartii strain AR_0026	4368167	2644917	2655509	4368167		Mycobacterium_phage(25.0%)	11	NA	NA
AVE42547.1|2644917_2646120_-	proline/glycine betaine ABC transporter ATP-binding protein ProV	NA	G3M9Y6	Bacillus_virus	36.8	1.9e-27
AVE42548.1|2646846_2647818_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0M4S3B4	Mycobacterium_phage	72.8	1.6e-133
AVE42549.1|2647831_2649964_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	52.2	4.4e-213
AVE42550.1|2649974_2650388_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	41.9	5.3e-14
AVE42551.1|2650397_2650625_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	56.2	1.6e-17
AVE42552.1|2650915_2651386_+	cysteine methyltransferase	NA	A0A2P1EL10	Moumouvirus	35.7	7.6e-17
AVE42553.1|2651592_2651802_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	79.7	7.7e-22
AVE42554.1|2651944_2652910_-	lipoyl synthase	NA	NA	NA	NA	NA
AVE42555.1|2653033_2653678_-	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
AVE42556.1|2653937_2654201_-	hypothetical protein	NA	NA	NA	NA	NA
AVE42557.1|2654300_2655509_-	serine-type D-Ala-D-Ala carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	50.9	8.8e-110
>prophage 11
CP026704	Providencia stuartii strain AR_0026	4368167	2831951	2839959	4368167		Escherichia_phage(50.0%)	8	NA	NA
AVE42712.1|2831951_2834372_+	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	38.7	1.5e-140
AVE42713.1|2834368_2835010_+	dimethylsulfoxide reductase, chain B	NA	A0A077SL61	Escherichia_phage	56.5	6.9e-61
AVE42714.1|2835006_2835909_+	reductase	NA	NA	NA	NA	NA
AVE42715.1|2835920_2836493_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	40.0	1.1e-17
AVE42716.1|2836807_2837017_+	uridine kinase	NA	NA	NA	NA	NA
AVE42717.1|2837265_2837799_+	dCTP deaminase	NA	I4AZP2	Saccharomonospora_phage	31.6	3.9e-17
AVE42718.1|2838681_2839326_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.2	1.4e-37
AVE42719.1|2839377_2839959_+	dCTP deaminase	NA	I4AZP2	Saccharomonospora_phage	41.1	5.7e-30
>prophage 12
CP026704	Providencia stuartii strain AR_0026	4368167	2885495	2896191	4368167	protease,tRNA	Paramecium_bursaria_Chlorella_virus(16.67%)	10	NA	NA
AVE42761.1|2885495_2886341_+	hydrolase	NA	M1I6H3	Paramecium_bursaria_Chlorella_virus	30.6	1.8e-21
AVE42762.1|2886337_2887087_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AVE42763.1|2887230_2888169_+	DUF1177 domain-containing protein	NA	NA	NA	NA	NA
AVE42764.1|2888272_2888524_-	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	56.7	1.3e-15
AVE42765.1|2888907_2889228_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	48.4	1.7e-15
AVE42766.1|2889258_2891544_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.9	8.4e-170
AVE42767.1|2891610_2891829_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AVE42768.1|2891969_2892671_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
AVE42769.1|2892679_2894422_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	24.9	5.9e-22
AVE42770.1|2894424_2896191_-	thiol reductant ABC exporter subunit CydD	NA	F2Y302	Organic_Lake_phycodnavirus	32.8	1.4e-15
>prophage 13
CP026704	Providencia stuartii strain AR_0026	4368167	2991366	3006546	4368167	integrase	Morganella_phage(40.0%)	19	2994156:2994169	2998917:2998930
AVE42836.1|2991366_2993421_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	25.7	3.3e-16
AVE42837.1|2993460_2993919_-	methylglyoxal synthase	NA	NA	NA	NA	NA
2994156:2994169	attL	TTTACTGATTTAGG	NA	NA	NA	NA
AVE42838.1|2994180_2994594_+	CoA-binding protein	NA	NA	NA	NA	NA
AVE44130.1|2994664_2994982_-	heat shock protein HspQ	NA	NA	NA	NA	NA
AVE42839.1|2995192_2995486_+	acylphosphatase	NA	NA	NA	NA	NA
AVE42840.1|2995498_2995828_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
AVE42841.1|2996262_2997474_+|integrase	integrase	integrase	Q7M297	Enterobacteria_phage	57.5	4.1e-131
AVE42842.1|2997686_2998514_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42843.1|2998805_2999024_+	AlpA family transcriptional regulator	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	45.3	5.1e-08
2998917:2998930	attR	CCTAAATCAGTAAA	NA	NA	NA	NA
AVE42844.1|2999023_2999419_+	hypothetical protein	NA	A0A1W6JPH9	Morganella_phage	57.8	7.3e-29
AVE42845.1|2999433_3000267_+	antA/AntB antirepressor family protein	NA	A0A0H5BBY8	Pseudomonas_phage	38.0	1.8e-21
AVE42846.1|3000263_3001205_+	hypothetical protein	NA	A0A1W6JPK3	Morganella_phage	53.1	1.7e-68
AVE42847.1|3001201_3001381_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42848.1|3001377_3001587_+	hypothetical protein	NA	A0A1W6JPF1	Morganella_phage	50.7	3.0e-10
AVE42849.1|3001756_3001951_+	hypothetical protein	NA	NA	NA	NA	NA
AVE42850.1|3001950_3002547_+	hypothetical protein	NA	A0A286S1S7	Klebsiella_phage	37.6	3.2e-28
AVE42851.1|3002561_3004934_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	37.4	5.5e-140
AVE42852.1|3005313_3006051_+	competence protein CoiA	NA	NA	NA	NA	NA
AVE42853.1|3006093_3006546_+	osmoprotectant transporter ProQ	NA	A0A1W6JPI6	Morganella_phage	60.6	3.6e-16
>prophage 14
CP026704	Providencia stuartii strain AR_0026	4368167	4111232	4122323	4368167	plate,tail	Haemophilus_phage(44.44%)	13	NA	NA
AVE43821.1|4111232_4111850_-|tail	phage tail protein	tail	K7PMH7	Enterobacteria_phage	42.3	7.6e-33
AVE43822.1|4111849_4113340_-	histidine kinase	NA	M1TAS6	Escherichia_phage	51.7	6.1e-28
AVE43823.1|4113326_4113983_-	DUF2612 domain-containing protein	NA	D0UIH4	Aggregatibacter_phage	43.3	1.3e-35
AVE43824.1|4113975_4115100_-	hypothetical protein	NA	D0UIH5	Aggregatibacter_phage	41.1	2.2e-78
AVE43825.1|4115083_4115446_-	hypothetical protein	NA	A0A2H5BFY4	Vibrio_phage	38.3	2.5e-12
AVE43826.1|4115445_4116102_-|plate	baseplate protein	plate	Q7Y5S7	Haemophilus_phage	50.7	2.1e-33
AVE43827.1|4116098_4116923_-	hypothetical protein	NA	Q7Y5S8	Haemophilus_phage	48.4	8.5e-72
AVE43828.1|4116897_4117236_-	hypothetical protein	NA	NA	NA	NA	NA
AVE43829.1|4117232_4117964_-	hypothetical protein	NA	Q7Y5T0	Haemophilus_phage	34.0	5.7e-27
AVE43830.1|4118046_4119831_-	hypothetical protein	NA	NA	NA	NA	NA
AVE43831.1|4119975_4120368_-	hypothetical protein	NA	NA	NA	NA	NA
AVE43832.1|4120367_4120802_-	DUF3277 domain-containing protein	NA	NA	NA	NA	NA
AVE43833.1|4120811_4122323_-	DUF3383 domain-containing protein	NA	Q7Y5T5	Haemophilus_phage	40.6	5.7e-98
