The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 2
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	75598	94369	4820221	integrase,plate,tail	Escherichia_phage(31.25%)	23	89660:89675	99218:99233
AVH89368.1|75598_76672_-|tail	phage tail protein	tail	D5LGY1	Escherichia_phage	52.5	4.9e-96
AVH89369.1|76662_76878_-|tail	phage tail protein	tail	A0A193GYC8	Enterobacter_phage	54.3	1.6e-14
AVH89370.1|76861_77329_-|tail	phage tail protein	tail	A0A218M4I2	Erwinia_phage	35.2	1.1e-15
AVH89371.1|77331_79752_-|tail	phage tail tape measure protein	tail	A0A1W6JT50	Escherichia_phage	22.2	6.7e-16
AVH89372.1|79872_80163_-|tail	phage tail assembly protein	tail	A0A193GYZ8	Enterobacter_phage	58.5	1.5e-18
AVH89373.1|80243_80747_-|tail	phage major tail tube protein	tail	A0A193GYM4	Enterobacter_phage	51.2	1.4e-40
AVH89374.1|80749_81952_-|tail	phage tail protein	tail	A0A088FVH5	Escherichia_phage	54.2	7.9e-127
AVH89375.1|82058_82718_-	hypothetical protein	NA	V9IQM3	Stenotrophomonas_phage	43.9	1.0e-35
AVH89376.1|82719_84687_-|tail	phage tail protein	tail	V9IQX0	Stenotrophomonas_phage	37.5	1.0e-99
AVH89377.1|84694_85474_-|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	50.6	7.1e-44
AVH89378.1|85466_86363_-|plate	baseplate assembly protein	plate	V9IQV9	Stenotrophomonas_phage	53.1	5.4e-80
AVH89379.1|86365_86704_-|plate	phage baseplate protein	plate	A0A193GYY8	Enterobacter_phage	62.2	7.8e-32
AVH89380.1|86756_87347_-|plate	phage baseplate assembly protein V	plate	A0A193GYL5	Enterobacter_phage	38.2	1.9e-25
AVH89381.1|87343_87898_-	hypothetical protein	NA	NA	NA	NA	NA
AVH89382.1|88251_88629_-	hypothetical protein	NA	NA	NA	NA	NA
AVH89383.1|88625_89111_-	glycoside hydrolase	NA	D5LH07	Escherichia_phage	55.0	7.0e-42
AVH89384.1|89107_89458_-	hypothetical protein	NA	NA	NA	NA	NA
AVH89385.1|89454_89904_-	hypothetical protein	NA	NA	NA	NA	NA
89660:89675	attL	AACAGTTCGCCGCCGA	NA	NA	NA	NA
AVH89386.1|90238_90622_-	hypothetical protein	NA	NA	NA	NA	NA
AVH89387.1|90774_91413_-	hypothetical protein	NA	A0A2H4J8A1	uncultured_Caudovirales_phage	37.6	4.5e-20
AVH89388.1|91454_91682_-	hypothetical protein	NA	NA	NA	NA	NA
AVH89389.1|91756_92032_-	hypothetical protein	NA	NA	NA	NA	NA
AVH89390.1|92032_94369_-|integrase	integrase	integrase	D5LH15	Escherichia_phage	43.7	3.3e-137
99218:99233	attR	TCGGCGGCGAACTGTT	NA	NA	NA	NA
>prophage 3
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	108855	109791	4820221		Burkholderia_virus(100.0%)	1	NA	NA
AVH89405.1|108855_109791_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	21.9	1.2e-08
>prophage 4
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	137066	137951	4820221		Thermobifida_phage(100.0%)	1	NA	NA
AVH89433.1|137066_137951_-	RNase adaptor protein RapZ	NA	A0A0R8VB27	Thermobifida_phage	30.5	3.5e-07
>prophage 5
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	141236	144799	4820221		Staphylococcus_phage(33.33%)	5	NA	NA
AVH89438.1|141236_141956_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.6	2.8e-26
AVH89439.1|141955_142507_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AVH89440.1|142610_143186_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AVH89441.1|143182_143731_-	phenylphosphate carboxylase subunit delta	NA	A0A222YVZ6	Synechococcus_phage	29.1	2.6e-08
AVH89442.1|143797_144799_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	32.1	8.6e-34
>prophage 6
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	150696	151755	4820221		Prochlorococcus_phage(100.0%)	1	NA	NA
AVH89452.1|150696_151755_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	1.7e-72
>prophage 7
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	170656	171334	4820221		Synechococcus_phage(100.0%)	1	NA	NA
AVH89470.1|170656_171334_-	PKHD-type hydroxylase	NA	A0A1D8KSK5	Synechococcus_phage	38.9	1.9e-13
>prophage 8
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	176939	180219	4820221		environmental_halophage(50.0%)	3	NA	NA
AVH89477.1|176939_178196_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	41.9	4.6e-93
AVH89478.1|178192_179455_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
AVH89479.1|179454_180219_-	Fe-S cluster assembly ATPase SufC	NA	W5SAS9	Pithovirus	30.3	1.6e-11
>prophage 9
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	200010	200925	4820221	transposase	Wolbachia_phage(100.0%)	1	NA	NA
AVH89499.1|200010_200925_+|transposase	IS110 family transposase ISStma6	transposase	Q75QL1	Wolbachia_phage	34.9	7.1e-27
>prophage 10
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	216866	219795	4820221		Anomala_cuprea_entomopoxvirus(33.33%)	3	NA	NA
AVH89507.1|216866_217769_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.6	6.3e-20
AVH89508.1|217901_218933_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.7	2.4e-15
AVH89509.1|219225_219795_+	single-stranded DNA-binding protein	NA	K7ZMK1	Xanthomonas_citri_phage	68.9	8.3e-34
>prophage 11
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	226013	226559	4820221		Agrobacterium_phage(100.0%)	1	NA	NA
AVH89511.1|226013_226559_-	3'-5' exonuclease	NA	A0A2L0UZL4	Agrobacterium_phage	24.1	2.2e-07
>prophage 12
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	241887	242940	4820221		Bacillus_phage(100.0%)	1	NA	NA
AVH89525.1|241887_242940_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	30.5	1.9e-15
>prophage 13
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	251078	252617	4820221		Moraxella_phage(100.0%)	1	NA	NA
AVH89536.1|251078_252617_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	43.8	1.6e-39
>prophage 14
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	259285	261336	4820221		Bacillus_phage(100.0%)	2	NA	NA
AVH89545.1|259285_260026_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	33.6	1.2e-29
AVH89546.1|260022_261336_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	22.1	1.4e-07
>prophage 15
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	282746	284501	4820221		Acinetobacter_phage(100.0%)	1	NA	NA
AVH89565.1|282746_284501_-	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	31.9	5.5e-52
>prophage 16
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	312028	315022	4820221		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AVH89595.1|312028_315022_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	56.3	9.6e-307
>prophage 17
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	320387	323219	4820221	tRNA	Bandra_megavirus(100.0%)	1	NA	NA
AVH89602.1|320387_323219_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2K9V7W4	Bandra_megavirus	25.2	6.3e-74
>prophage 18
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	329270	332057	4820221		Acinetobacter_phage(100.0%)	1	NA	NA
AVH89609.1|329270_332057_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	25.5	1.9e-30
>prophage 19
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	336769	337774	4820221		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
AVH93472.1|336769_337774_+	2-hydroxyacid dehydrogenase	NA	M1H502	Paramecium_bursaria_Chlorella_virus	41.5	1.4e-60
>prophage 20
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	345776	351339	4820221		Bacillus_virus(50.0%)	3	NA	NA
AVH89620.1|345776_347834_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	G3MA91	Bacillus_virus	37.4	6.9e-22
AVH89621.1|347984_349361_+	DNA repair protein RadA	NA	NA	NA	NA	NA
AVH89622.1|349482_351339_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	21.8	7.9e-17
>prophage 21
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	365281	371684	4820221		Tupanvirus(50.0%)	3	NA	NA
AVH89640.1|365281_366925_-	catalase	NA	A0A2K9L0T1	Tupanvirus	44.7	6.0e-93
AVH89641.1|367105_368863_-	wall associated protein	NA	NA	NA	NA	NA
AVH89642.1|369062_371684_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	20.9	2.2e-25
>prophage 22
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	375714	378731	4820221		Bacteroides_phage(50.0%)	3	NA	NA
AVH89646.1|375714_376374_+	adenine methyltransferase	NA	B5TR99	Bacteroides_phage	35.4	1.5e-15
AVH89647.1|376812_376995_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
AVH89648.1|377162_378731_+	hypothetical protein	NA	A0A1B1P7L5	Bacillus_phage	27.2	2.2e-12
>prophage 23
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	390692	392663	4820221		Enterobacteria_phage(100.0%)	1	NA	NA
AVH89664.1|390692_392663_+	site-specific DNA-methyltransferase	NA	Q1MVP0	Enterobacteria_phage	25.4	1.7e-25
>prophage 24
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	438026	440861	4820221		Brevibacillus_phage(100.0%)	1	NA	NA
AVH89716.1|438026_440861_+	conjugal transfer protein TraA	NA	A0A0K2FLP8	Brevibacillus_phage	25.7	1.3e-15
>prophage 25
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	446014	449899	4820221		Faustovirus(50.0%)	3	NA	NA
AVH89720.1|446014_447007_+	glycosyltransferase	NA	A0A142BZU7	Faustovirus	27.0	4.1e-20
AVH89721.1|447036_447396_-	ribonuclease inhibitor	NA	NA	NA	NA	NA
AVH93476.1|447676_449899_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	70.0	1.6e-08
>prophage 26
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	465850	472483	4820221		Ectocarpus_siliculosus_virus(33.33%)	6	NA	NA
AVH89739.1|465850_467230_-	sensor histidine kinase	NA	Q8QKW6	Ectocarpus_siliculosus_virus	33.3	2.7e-06
AVH89740.1|467226_467910_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AVH89741.1|468041_469169_-	metallophosphoesterase	NA	M1PX44	Moumouvirus	29.0	5.1e-11
AVH89742.1|469242_469692_-	transcriptional regulator	NA	NA	NA	NA	NA
AVH89743.1|469770_470985_+	MFS transporter	NA	NA	NA	NA	NA
AVH93477.1|471067_472483_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	39.1	4.9e-19
>prophage 27
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	478912	481006	4820221		Klosneuvirus(100.0%)	1	NA	NA
AVH89748.1|478912_481006_+	M13 family peptidase	NA	A0A1V0SHG2	Klosneuvirus	29.8	4.8e-79
>prophage 28
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	488044	488770	4820221		Bacillus_phage(100.0%)	1	NA	NA
AVH89754.1|488044_488770_+	two-component system response regulator CreB	NA	W8CYM9	Bacillus_phage	33.5	1.3e-28
>prophage 29
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	502709	503960	4820221		Turkeypox_virus(100.0%)	1	NA	NA
AVH89767.1|502709_503960_-	alkaline phosphatase family protein	NA	A0A0M3PB47	Turkeypox_virus	33.3	5.3e-57
>prophage 30
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	510858	526505	4820221		Bacillus_phage(57.14%)	11	NA	NA
AVH89775.1|510858_512805_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	35.5	2.8e-57
AVH89776.1|513023_515447_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.3	1.8e-16
AVH89777.1|515556_517221_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	33.5	3.9e-15
AVH89778.1|517255_517978_+	23S rRNA pseudouridine synthase F	NA	NA	NA	NA	NA
AVH89779.1|518122_519193_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	30.4	4.0e-13
AVH89780.1|519356_520517_+	ATP-binding protein	NA	A0A077SLJ9	Escherichia_phage	41.4	6.6e-70
AVH89781.1|520562_521510_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AVH89782.1|521544_522363_-	DUF72 domain-containing protein	NA	D2XAQ3	Marseillevirus	30.6	6.6e-08
AVH89783.1|522359_522803_-	glyoxalase	NA	NA	NA	NA	NA
AVH89784.1|522913_524473_+	serine hydrolase	NA	NA	NA	NA	NA
AVH89785.1|524672_526505_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.1	1.7e-35
>prophage 31
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	542461	546952	4820221		Streptomyces_phage(50.0%)	2	NA	NA
AVH89802.1|542461_546052_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	36.0	2.6e-181
AVH89803.1|546280_546952_-	ribonuclease HII	NA	D2TEQ2	Emiliania_huxleyi_virus	38.7	6.3e-25
>prophage 32
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	556832	557600	4820221		Flavobacterium_phage(100.0%)	1	NA	NA
AVH89812.1|556832_557600_-	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	34.1	1.2e-16
>prophage 33
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	575882	577574	4820221		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
AVH89829.1|575882_577574_+	asparagine synthase B	NA	E5ERH5	Ostreococcus_lucimarinus_virus	40.0	8.9e-92
>prophage 34
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	582440	584684	4820221		Bacillus_virus(100.0%)	1	NA	NA
AVH89833.1|582440_584684_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	35.0	1.1e-84
>prophage 35
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	593672	596132	4820221		Lactococcus_phage(100.0%)	1	NA	NA
AVH89842.1|593672_596132_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	35.5	1.2e-65
>prophage 36
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	599384	608138	4820221		Bacillus_phage(50.0%)	5	NA	NA
AVH89846.1|599384_601343_-	MacB family efflux pump subunit	NA	G9BWD6	Planktothrix_phage	40.1	4.0e-35
AVH89847.1|601339_602584_-	efflux RND transporter periplasmic adaptor subunit	NA	A0A140XAI1	Dickeya_phage	46.9	2.1e-13
AVH89848.1|602788_603517_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.2	4.9e-31
AVH89849.1|603523_604933_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
AVH89850.1|605111_608138_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	35.4	2.3e-13
>prophage 37
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	612910	618465	4820221		Cyanophage(66.67%)	5	NA	NA
AVH93481.1|612910_613741_-	phosphate ABC transporter ATP-binding protein PstB	NA	A0A1V0SE00	Indivirus	28.6	6.0e-17
AVH89857.1|613760_614624_-	phosphate ABC transporter permease PtsA	NA	NA	NA	NA	NA
AVH89858.1|614623_615592_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AVH89859.1|615674_616763_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.1	2.7e-49
AVH89860.1|617448_618465_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4SNR3	Cyanophage	41.5	6.2e-48
>prophage 38
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	633070	633949	4820221		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AVH89876.1|633070_633949_-	plasmid replication/partition related protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	29.5	2.1e-12
>prophage 39
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	639702	641046	4820221		Bacillus_phage(100.0%)	1	NA	NA
AVH89880.1|639702_641046_-	diguanylate cyclase response regulator	NA	A0A127AWB9	Bacillus_phage	36.2	9.8e-17
>prophage 40
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	651057	652194	4820221		Bacillus_virus(100.0%)	1	NA	NA
AVH89888.1|651057_652194_+	polyamine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.8	6.7e-27
>prophage 41
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	661160	664530	4820221		Erwinia_phage(50.0%)	3	NA	NA
AVH89899.1|661160_662147_-	PhoH family protein	NA	A0A1B2ICF6	Erwinia_phage	44.6	1.1e-44
AVH89900.1|662629_663586_+	hemolysin secretion protein D	NA	NA	NA	NA	NA
AVH89901.1|663606_664530_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.2	1.4e-19
>prophage 42
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	668998	669934	4820221		Geobacillus_virus(100.0%)	1	NA	NA
AVH89906.1|668998_669934_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	54.6	2.5e-27
>prophage 43
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	673604	677316	4820221	protease	Pseudomonas_phage(50.0%)	6	NA	NA
AVH89911.1|673604_674057_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	50.4	1.6e-24
AVH89912.1|674103_674454_-	DUF3301 domain-containing protein	NA	NA	NA	NA	NA
AVH89913.1|674521_675523_-	DUF2272 domain-containing protein	NA	NA	NA	NA	NA
AVH89914.1|675636_676488_-	nicotinate-nucleotide diphosphorylase (carboxylating)	NA	NA	NA	NA	NA
AVH89915.1|676484_676754_-	hypothetical protein	NA	NA	NA	NA	NA
AVH89916.1|676812_677316_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	40.0	1.1e-18
>prophage 44
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	700098	706738	4820221		Bacillus_phage(66.67%)	5	NA	NA
AVH89937.1|700098_701442_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	27.4	3.5e-14
AVH89938.1|701501_703901_+	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	35.6	7.1e-10
AVH89939.1|703904_704567_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AVH89940.1|704570_704993_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AVH89941.1|704989_706738_+	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	31.2	2.0e-54
>prophage 45
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	717712	723063	4820221		Planktothrix_phage(33.33%)	8	NA	NA
AVH89951.1|717712_718441_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.0	1.9e-38
AVH89952.1|718437_719358_+	hemolysin secretion protein D	NA	NA	NA	NA	NA
AVH89953.1|719360_719810_-	hypothetical protein	NA	NA	NA	NA	NA
AVH89954.1|719802_720204_-	hypothetical protein	NA	NA	NA	NA	NA
AVH89955.1|720841_721246_-	NUDIX domain-containing protein	NA	A0A0E3JJF3	Streptomyces_phage	37.5	4.4e-05
AVH89956.1|721353_721851_+	N-acetyltransferase	NA	NA	NA	NA	NA
AVH89957.1|721894_722443_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AVH89958.1|722517_723063_+	DUF4124 domain-containing protein	NA	B7SYH2	Stenotrophomonas_phage	64.2	8.2e-31
>prophage 46
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	726514	727033	4820221		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AVH89963.1|726514_727033_+	ATP-binding protein	NA	A0A2H4JFX6	uncultured_Caudovirales_phage	38.5	1.2e-23
>prophage 47
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	736511	742851	4820221	integrase	Xylella_phage(28.57%)	9	735894:735907	743805:743818
735894:735907	attL	CGATCTGCTCGGCC	NA	NA	NA	NA
AVH89976.1|736511_737540_-|integrase	integrase	integrase	C8CLF4	Xylella_phage	60.5	3.4e-102
AVH89977.1|737542_737791_-	hypothetical protein	NA	C8CLF5	Xylella_phage	46.3	4.0e-09
AVH89978.1|737802_738921_-	methyltransferase	NA	Q6J1P4	Burkholderia_virus	47.4	6.3e-70
AVH89979.1|739340_739793_-	hypothetical protein	NA	A0A0K1LLW1	Caulobacter_phage	35.7	1.9e-17
AVH89980.1|739789_740011_-	hypothetical protein	NA	NA	NA	NA	NA
AVH89981.1|740007_740229_-	hypothetical protein	NA	B7SYG4	Stenotrophomonas_phage	64.5	4.3e-15
AVH89982.1|740225_741005_-	recombinase	NA	NA	NA	NA	NA
AVH93486.1|741001_741895_-	phage recombination protein Bet	NA	U6C6J0	Ralstonia_phage	68.6	8.1e-68
AVH89983.1|741912_742851_-	hypothetical protein	NA	A0A077KCC0	Edwardsiella_phage	50.9	3.3e-19
743805:743818	attR	CGATCTGCTCGGCC	NA	NA	NA	NA
>prophage 48
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	747368	759212	4820221	terminase	Pseudomonas_phage(25.0%)	21	NA	NA
AVH89993.1|747368_748103_+	hypothetical protein	NA	V5URT9	Shigella_phage	34.0	3.7e-10
AVH89994.1|748099_749371_+	helicase DnaB	NA	A0A2R3UA46	Siphoviridae_environmental_samples	67.1	4.2e-163
AVH89995.1|749370_749550_+	hypothetical protein	NA	NA	NA	NA	NA
AVH89996.1|749546_749990_+	hypothetical protein	NA	NA	NA	NA	NA
AVH89997.1|750168_750426_+	hypothetical protein	NA	NA	NA	NA	NA
AVH89998.1|750422_750890_+	NinB family protein	NA	A0A1R3Y605	Salmonella_virus	37.0	3.3e-12
AVH89999.1|750889_751147_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90000.1|751146_751614_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90001.1|751610_751793_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90002.1|751792_752077_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90003.1|752073_752376_+	hypothetical protein	NA	Q8W6N7	Burkholderia_virus	42.5	7.5e-10
AVH90004.1|752372_752738_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90005.1|752734_753178_+	hypothetical protein	NA	NA	NA	NA	NA
AVH93487.1|753291_753654_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90006.1|753817_754024_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90007.1|754016_754364_+	hypothetical protein	NA	A0A1I9KFE6	Aeromonas_phage	73.3	9.9e-14
AVH90008.1|754360_754843_+	hypothetical protein	NA	A0A0R6PH16	Moraxella_phage	34.9	3.2e-10
AVH90009.1|754839_756207_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0U1SZM0	Pseudomonas_phage	43.9	1.3e-45
AVH90010.1|756269_756494_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90011.1|756545_758870_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90012.1|758882_759212_+	hypothetical protein	NA	A0A0S4L5D5	Pseudomonas_phage	63.6	1.6e-26
>prophage 49
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	764198	767727	4820221		Xanthomonas_citri_phage(100.0%)	3	NA	NA
AVH90019.1|764198_766193_+	hypothetical protein	NA	K7ZPX7	Xanthomonas_citri_phage	26.9	3.2e-08
AVH90020.1|766189_767155_+	hypothetical protein	NA	K7ZMK0	Xanthomonas_citri_phage	43.4	4.4e-51
AVH90021.1|767151_767727_+	hypothetical protein	NA	K7ZJS7	Xanthomonas_citri_phage	45.7	6.0e-40
>prophage 50
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	773797	779937	4820221		Stenotrophomonas_phage(40.0%)	9	NA	NA
AVH90028.1|773797_774781_+	oxygenase	NA	A0A0N7KZA9	Stx2-converting_phage	43.3	2.3e-63
AVH90029.1|774913_775366_+	lysozyme	NA	A0A088FRS5	Escherichia_phage	53.3	8.0e-40
AVH90030.1|775362_775680_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90031.1|775905_776340_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90032.1|776315_776579_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90033.1|776578_777901_+	hypothetical protein	NA	E3SNL6	Prochlorococcus_phage	33.2	8.7e-10
AVH90034.1|777939_778623_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVH90035.1|778657_779323_-	SOS response-associated peptidase	NA	B7SYF4	Stenotrophomonas_phage	95.5	1.2e-121
AVH90036.1|779433_779937_+	hypothetical protein	NA	B7SYF7	Stenotrophomonas_phage	92.6	2.7e-81
>prophage 51
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	795458	803546	4820221		Streptococcus_phage(40.0%)	8	NA	NA
AVH93489.1|795458_796037_-	N-acetyltransferase	NA	D0R097	Streptococcus_phage	26.7	2.8e-13
AVH90051.1|796203_798093_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	35.2	6.2e-94
AVH90052.1|798265_798499_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90053.1|798899_800564_+	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.4	3.4e-136
AVH90054.1|800653_801484_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	42.3	7.5e-52
AVH90055.1|801480_801828_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90056.1|801827_802157_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90057.1|802253_803546_+	enolase	NA	A0A1X9I5Z8	Streptococcus_phage	61.6	5.5e-142
>prophage 52
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	807031	826696	4820221	protease,tRNA	uncultured_Mediterranean_phage(18.18%)	22	NA	NA
AVH90063.1|807031_807811_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	56.8	4.9e-77
AVH90064.1|807807_808485_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.8	8.6e-38
AVH90065.1|808503_809118_+	DedA family protein	NA	NA	NA	NA	NA
AVH90066.1|809114_809906_+	LysM peptidoglycan-binding domain-containing protein	NA	I2E8W3	Clostridium_phage	37.1	7.5e-09
AVH90067.1|810239_810773_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90068.1|810756_811131_-	hypothetical protein	NA	NA	NA	NA	NA
AVH90069.1|811144_811450_-	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA	NA
AVH90070.1|811515_812148_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AVH90071.1|812211_814152_+|protease	ATP-dependent metalloprotease	protease	M4QMW8	Micromonas_pusilla_virus	42.5	1.6e-116
AVH90072.1|814254_814440_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90073.1|814444_814684_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90074.1|815042_815939_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	30.5	5.1e-22
AVH90075.1|815938_816892_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AVH90076.1|816988_817264_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AVH90077.1|817278_818589_+	GTPase HflX	NA	NA	NA	NA	NA
AVH93490.1|818709_819204_+	CinA family protein	NA	B5TK85	Pseudomonas_phage	49.7	1.7e-27
AVH93491.1|819238_820921_+	2-polyprenylphenol 6-hydroxylase	NA	E5EQ95	Micromonas_sp._RCC1109_virus	29.3	4.9e-42
AVH90078.1|821107_821743_+	transcriptional repressor LexA	NA	A0A1W6JNS2	Morganella_phage	41.8	4.3e-15
AVH90079.1|821947_822985_+	DNA recombination/repair protein RecA	NA	A0A0S2MVG1	Bacillus_phage	61.9	3.0e-114
AVH90080.1|823095_823587_+	recombination regulator RecX	NA	NA	NA	NA	NA
AVH90081.1|823696_826345_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.0	8.2e-84
AVH90082.1|826492_826696_+	carbon storage regulator	NA	J7I430	Pseudomonas_phage	74.5	2.9e-13
>prophage 53
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	858556	859957	4820221		Vibrio_phage(100.0%)	1	NA	NA
AVH90107.1|858556_859957_-	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	37.6	5.3e-74
>prophage 54
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	865650	868369	4820221		unidentified_phage(50.0%)	3	NA	NA
AVH90114.1|865650_867030_+	polynucleotide adenylyltransferase PcnB	NA	H7BUW3	unidentified_phage	37.7	7.7e-25
AVH90115.1|867033_867519_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AVH90116.1|867553_868369_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	34.9	4.5e-33
>prophage 55
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	881526	884398	4820221		Synechococcus_phage(50.0%)	2	NA	NA
AVH90130.1|881526_882963_-	glucose-6-phosphate dehydrogenase	NA	A0A222YYZ2	Synechococcus_phage	34.7	4.0e-69
AVH90131.1|883315_884398_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	30.1	4.6e-25
>prophage 56
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	891129	891843	4820221		Planktothrix_phage(100.0%)	1	NA	NA
AVH90141.1|891129_891843_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.2	5.2e-33
>prophage 57
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	896014	900640	4820221		uncultured_Mediterranean_phage(100.0%)	5	NA	NA
AVH90147.1|896014_897907_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.0	2.4e-114
AVH90148.1|898559_899138_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
AVH90149.1|899164_899674_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	39.2	2.4e-24
AVH90150.1|899734_900226_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90151.1|900358_900640_+	ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	59.1	3.0e-21
>prophage 58
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	912151	913567	4820221		Klosneuvirus(100.0%)	1	NA	NA
AVH90161.1|912151_913567_+	deoxyribodipyrimidine photo-lyase	NA	A0A1V0SIL2	Klosneuvirus	30.7	2.0e-52
>prophage 59
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	934777	942078	4820221		Mycobacterium_phage(40.0%)	12	NA	NA
AVH90181.1|934777_935860_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	26.7	2.1e-25
AVH90182.1|935916_937092_-	DUF3596 domain-containing protein	NA	A0A1W6JTA0	Pseudomonas_phage	48.5	1.2e-90
AVH90183.1|937034_937313_-	excisionase	NA	NA	NA	NA	NA
AVH90184.1|937546_937774_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90185.1|937888_938116_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90186.1|938207_938945_-	hypothetical protein	NA	A0A249XQ08	Mycobacterium_phage	33.0	5.3e-25
AVH90187.1|938931_939240_-	hypothetical protein	NA	NA	NA	NA	NA
AVH90188.1|939242_939500_-	hypothetical protein	NA	NA	NA	NA	NA
AVH90189.1|939480_940206_-	HNH endonuclease	NA	NA	NA	NA	NA
AVH90190.1|940209_940917_-	hypothetical protein	NA	R4TPW0	Mycobacterium_phage	30.7	2.2e-12
AVH90191.1|940922_941168_-	hypothetical protein	NA	NA	NA	NA	NA
AVH90192.1|941175_942078_-	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	32.4	4.7e-39
>prophage 60
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	949692	951283	4820221		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
AVH90208.1|949692_950124_+	DUF1064 domain-containing protein	NA	A0A2H4J891	uncultured_Caudovirales_phage	37.7	2.2e-10
AVH90209.1|950120_950459_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90210.1|950455_951283_+	hypothetical protein	NA	Q5QF32	Pseudomonas_virus	43.8	5.2e-45
>prophage 61
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	954401	967068	4820221	capsid,terminase	Caulobacter_phage(16.67%)	20	NA	NA
AVH90216.1|954401_954944_+	lysozyme	NA	A0A0M4S5S0	Caulobacter_phage	40.0	3.0e-17
AVH90217.1|954940_955315_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90218.1|955311_955641_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90219.1|955645_955942_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90220.1|955971_956256_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90221.1|956252_956657_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90222.1|956656_957196_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90223.1|957200_957728_+	hypothetical protein	NA	A0A0S3UFP9	Pseudomonas_phage	54.0	1.8e-35
AVH90224.1|957729_957936_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90225.1|957932_958907_+	hypothetical protein	NA	A0A2P0VPG9	Ralstonia_phage	34.0	1.2e-21
AVH90226.1|958909_959383_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90227.1|959379_960015_+|terminase	terminase small subunit	terminase	NA	NA	NA	NA
AVH90228.1|960018_961572_+	DNA packaging protein	NA	A0A2H4IZT4	uncultured_Caudovirales_phage	42.9	3.3e-109
AVH90229.1|961568_961847_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90230.1|961848_962037_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90231.1|962033_962507_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90232.1|962506_964678_+	hypothetical protein	NA	Q6V7P2	Burkholderia_virus	40.6	7.6e-128
AVH90233.1|964664_965660_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90234.1|965665_965881_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90235.1|965958_967068_+|capsid	N4-gp56 family major capsid protein	capsid	H2DE40	Erwinia_phage	54.1	5.3e-109
>prophage 62
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	979890	987798	4820221		Pseudomonas_phage(100.0%)	1	NA	NA
AVH90248.1|979890_987798_+	PLxRFG domain-containing protein	NA	A0A1Y0T2N3	Pseudomonas_phage	35.8	1.0e-142
>prophage 63
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	993094	993598	4820221		Staphylococcus_phage(100.0%)	1	NA	NA
AVH90258.1|993094_993598_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	43.6	3.4e-23
>prophage 64
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1001388	1004590	4820221		Micromonas_pusilla_virus(50.0%)	2	NA	NA
AVH90268.1|1001388_1003311_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	51.3	1.5e-148
AVH90269.1|1003465_1004590_+	molecular chaperone DnaJ	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	36.8	3.4e-23
>prophage 65
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1009833	1017474	4820221		Bacillus_phage(25.0%)	6	NA	NA
AVH90275.1|1009833_1011606_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	31.3	2.0e-57
AVH90276.1|1011598_1012195_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	46.8	5.6e-17
AVH90277.1|1012235_1013255_-	hypothetical protein	NA	NA	NA	NA	NA
AVH90278.1|1013251_1013875_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AVH90279.1|1014017_1016861_+	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	31.9	8.7e-15
AVH90280.1|1016880_1017474_-	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	35.2	1.7e-18
>prophage 66
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1020528	1025053	4820221	tRNA	uncultured_Mediterranean_phage(100.0%)	4	NA	NA
AVH90283.1|1020528_1021659_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	46.7	6.4e-86
AVH90284.1|1021793_1022138_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	38.8	1.1e-09
AVH90285.1|1022175_1024056_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AVH90286.1|1024072_1025053_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.1	2.1e-32
>prophage 67
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1032880	1055619	4820221		Leptospira_phage(25.0%)	17	NA	NA
AVH90292.1|1032880_1033090_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	61.3	2.8e-16
AVH90293.1|1033273_1033963_+	glutathione S-transferase	NA	NA	NA	NA	NA
AVH90294.1|1033995_1035561_+	YdiU family protein	NA	NA	NA	NA	NA
AVH90295.1|1036073_1036610_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.8	9.9e-29
AVH90296.1|1036784_1038161_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	30.2	1.5e-52
AVH90297.1|1038298_1039378_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
AVH90298.1|1039480_1040356_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AVH90299.1|1040737_1042621_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	26.7	7.2e-50
AVH90300.1|1042803_1043265_-	cytochrome C biogenesis protein CcsA	NA	NA	NA	NA	NA
AVH90301.1|1043274_1043664_-	cytochrome C	NA	NA	NA	NA	NA
AVH90302.1|1043869_1045021_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVH93498.1|1045077_1048539_+	acriflavin resistance protein	NA	S5VTK5	Leptospira_phage	27.5	6.0e-119
AVH90303.1|1048535_1051622_+	AcrB/AcrD/AcrF family protein	NA	S5VTK5	Leptospira_phage	24.2	1.2e-65
AVH90304.1|1051762_1052983_-	TraB family protein	NA	NA	NA	NA	NA
AVH90305.1|1052987_1053518_-	N-acetyltransferase	NA	NA	NA	NA	NA
AVH90306.1|1053532_1054420_-	acyltransferase	NA	M1IKC7	Paramecium_bursaria_Chlorella_virus	38.3	3.4e-50
AVH90307.1|1054581_1055619_-	agmatine deiminase family protein	NA	M1I7C5	Paramecium_bursaria_Chlorella_virus	27.7	1.6e-35
>prophage 68
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1062027	1064744	4820221		Catovirus(50.0%)	2	NA	NA
AVH93499.1|1062027_1063869_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	27.4	5.8e-20
AVH90316.1|1063865_1064744_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.8	1.1e-66
>prophage 69
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1069951	1070377	4820221		Powai_lake_megavirus(100.0%)	1	NA	NA
AVH90320.1|1069951_1070377_+	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	41.7	2.1e-18
>prophage 70
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1083020	1096605	4820221		Liberibacter_phage(33.33%)	7	NA	NA
AVH90333.1|1083020_1083899_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	35.5	6.6e-30
AVH93500.1|1084438_1085896_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	39.4	3.1e-85
AVH90334.1|1085999_1087565_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA	NA
AVH90335.1|1087811_1088804_+	restriction endonuclease	NA	A0A1B1IUE7	uncultured_Mediterranean_phage	27.9	1.2e-27
AVH90336.1|1089091_1090807_+	restriction endonuclease subunit M	NA	A0A2I6PG28	Plesiomonas_phage	28.1	9.9e-14
AVH90337.1|1090796_1092185_+	restriction endonuclease subunit S	NA	A0A240FAT6	Liberibacter_phage	28.8	7.7e-17
AVH90338.1|1093455_1096605_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	30.6	2.6e-68
>prophage 71
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1120975	1122721	4820221		Planktothrix_phage(100.0%)	1	NA	NA
AVH90366.1|1120975_1122721_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.1	1.6e-32
>prophage 72
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1131893	1132697	4820221		Infectious_laryngotracheitis_virus(100.0%)	1	NA	NA
AVH90373.1|1131893_1132697_+	APH(3')-II family aminoglycoside O-phosphotransferase	NA	A0A193CJY5	Infectious_laryngotracheitis_virus	50.2	4.4e-65
>prophage 73
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1153426	1159054	4820221		Hokovirus(50.0%)	4	NA	NA
AVH90392.1|1153426_1156528_+	histidine kinase	NA	A0A1V0SGX0	Hokovirus	40.0	3.5e-33
AVH90393.1|1156524_1157349_+	chemotaxis protein CheR	NA	NA	NA	NA	NA
AVH90394.1|1157348_1157924_+	chemotaxis protein CheB	NA	NA	NA	NA	NA
AVH90395.1|1157920_1159054_+	hybrid sensor histidine kinase/response regulator	NA	W8CYM9	Bacillus_phage	33.1	6.3e-09
>prophage 74
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1170334	1171729	4820221	tRNA	Tupanvirus(100.0%)	1	NA	NA
AVH90407.1|1170334_1171729_+|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L6G5	Tupanvirus	27.8	4.5e-41
>prophage 75
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1184902	1190535	4820221		Acinetobacter_phage(50.0%)	2	NA	NA
AVH90422.1|1184902_1187860_+	hypothetical protein	NA	A0A0P0I887	Acinetobacter_phage	33.1	6.5e-122
AVH90423.1|1188033_1190535_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	34.5	1.9e-90
>prophage 76
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1213555	1214797	4820221		Catovirus(100.0%)	1	NA	NA
AVH90440.1|1213555_1214797_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	47.9	1.7e-103
>prophage 77
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1218525	1228478	4820221		Bacillus_phage(25.0%)	8	NA	NA
AVH90444.1|1218525_1219602_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	25.7	1.8e-21
AVH90445.1|1219601_1220351_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AVH90446.1|1221630_1224780_+	multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.8	9.5e-55
AVH90447.1|1224760_1225153_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
AVH90448.1|1225247_1225940_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90449.1|1226094_1226661_-	elongation factor P-like protein YeiP	NA	NA	NA	NA	NA
AVH90450.1|1226710_1227481_-	KR domain-containing protein	NA	Q06VL0	Trichoplusia_ni_ascovirus	27.7	8.4e-13
AVH90451.1|1227581_1228478_-	hydroxymethylglutaryl-CoA lyase	NA	A0A1V0SKU2	Klosneuvirus	35.1	2.3e-38
>prophage 78
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1235739	1236867	4820221		Halovirus(100.0%)	1	NA	NA
AVH90461.1|1235739_1236867_+	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	33.1	5.8e-47
>prophage 79
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1242955	1244713	4820221		Bacillus_phage(100.0%)	1	NA	NA
AVH93505.1|1242955_1244713_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.8	9.1e-47
>prophage 80
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1250313	1251438	4820221		Pseudomonas_phage(100.0%)	1	NA	NA
AVH90469.1|1250313_1251438_+	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	39.7	2.5e-05
>prophage 81
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1256380	1270550	4820221	holin,tRNA	Catovirus(40.0%)	9	NA	NA
AVH90473.1|1256380_1257892_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.1	2.5e-85
AVH90474.1|1258097_1259237_+	HD domain-containing protein	NA	NA	NA	NA	NA
AVH90475.1|1259238_1261962_+	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	32.3	1.4e-46
AVH90476.1|1261974_1262844_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AVH90477.1|1263044_1264721_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.7	1.9e-30
AVH90478.1|1264943_1266626_-|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	29.9	5.6e-54
AVH90479.1|1266727_1268200_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
AVH90480.1|1268238_1268829_-	transcriptional regulator BetI	NA	NA	NA	NA	NA
AVH90481.1|1268999_1270550_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.6	1.6e-18
>prophage 82
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1282918	1298244	4820221		uncultured_Caudovirales_phage(60.0%)	11	NA	NA
AVH90492.1|1282918_1285189_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	70.0	1.7e-08
AVH90493.1|1286005_1288381_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	54.5	1.2e-09
AVH90494.1|1288482_1288866_-	hypothetical protein	NA	NA	NA	NA	NA
AVH90495.1|1289002_1289494_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AVH90496.1|1289726_1290500_-	flagellar brake protein	NA	NA	NA	NA	NA
AVH90497.1|1290702_1292952_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	70.0	1.6e-08
AVH90498.1|1293295_1295278_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AVH90499.1|1295323_1295689_-	response regulator	NA	W8CYM9	Bacillus_phage	40.2	4.7e-14
AVH90500.1|1295685_1295994_-	STAS domain-containing protein	NA	NA	NA	NA	NA
AVH90501.1|1296280_1297465_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AVH90502.1|1297461_1298244_-	ParA family protein	NA	Q8JL10	Natrialba_phage	34.3	6.5e-13
>prophage 83
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1309750	1311886	4820221		Bacillus_virus(100.0%)	1	NA	NA
AVH90512.1|1309750_1311886_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	G3MA91	Bacillus_virus	33.9	4.7e-21
>prophage 84
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1338892	1340092	4820221		Clostridium_phage(100.0%)	1	NA	NA
AVH90539.1|1338892_1340092_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A0A7RU71	Clostridium_phage	39.9	3.1e-14
>prophage 85
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1346525	1347470	4820221		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
AVH90548.1|1346525_1347470_-	chemotaxis protein CheV	NA	Q56AR1	Bacillus_thuringiensis_phage	30.0	1.2e-26
>prophage 86
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1355566	1367188	4820221	protease,tRNA	Bacillus_virus(25.0%)	11	NA	NA
AVH90555.1|1355566_1358326_+	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	37.1	6.9e-25
AVH90556.1|1358385_1358892_-	hypothetical protein	NA	NA	NA	NA	NA
AVH90557.1|1359029_1359245_-	hypothetical protein	NA	NA	NA	NA	NA
AVH90558.1|1359343_1360534_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.9	2.5e-16
AVH90559.1|1360697_1361312_-	lysogenization regulator HflD	NA	NA	NA	NA	NA
AVH90560.1|1361308_1362451_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
AVH90561.1|1362447_1362909_-	NUDIX hydrolase	NA	NA	NA	NA	NA
AVH90562.1|1362910_1363381_-	hypothetical protein	NA	NA	NA	NA	NA
AVH90563.1|1363493_1363820_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	41.1	5.1e-12
AVH90564.1|1363954_1364767_-	APH(6) family putative aminoglycoside O-phosphotransferase	NA	NA	NA	NA	NA
AVH90565.1|1364905_1367188_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	43.5	1.3e-170
>prophage 87
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1371587	1375153	4820221		Orpheovirus(50.0%)	2	NA	NA
AVH90570.1|1371587_1372559_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.9	2.6e-64
AVH90571.1|1372792_1375153_+	DNA translocase FtsK	NA	G1D482	Mycobacterium_virus	45.9	2.5e-84
>prophage 88
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1378301	1379663	4820221		Bacillus_virus(100.0%)	1	NA	NA
AVH93510.1|1378301_1379663_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	39.4	9.4e-76
>prophage 89
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1386979	1391529	4820221		Planktothrix_phage(33.33%)	4	NA	NA
AVH90581.1|1386979_1387741_+	heme ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.5	3.4e-14
AVH90582.1|1387805_1388555_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90583.1|1388970_1391007_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	29.7	2.3e-65
AVH90584.1|1391256_1391529_+	hypothetical protein	NA	A0A1W6DXU7	Xanthomonas_phage	42.7	1.4e-07
>prophage 90
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1410133	1412371	4820221		Ectocarpus_siliculosus_virus(100.0%)	1	NA	NA
AVH90603.1|1410133_1412371_-	ATPase	NA	Q8QNA6	Ectocarpus_siliculosus_virus	23.5	4.1e-20
>prophage 91
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1416315	1419456	4820221		Pseudomonas_phage(50.0%)	2	NA	NA
AVH90607.1|1416315_1417434_-	two-component sensor histidine kinase	NA	A0A1B0VMK3	Pseudomonas_phage	37.8	4.3e-58
AVH90608.1|1418679_1419456_-	hypothetical protein	NA	K4NXB8	Burkholderia_phage	30.5	8.2e-08
>prophage 92
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1438365	1440450	4820221		uncultured_virus(100.0%)	1	NA	NA
AVH90626.1|1438365_1440450_-	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.2	3.7e-87
>prophage 93
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1502675	1503629	4820221		Mycobacterium_phage(100.0%)	1	NA	NA
AVH90681.1|1502675_1503629_+	alpha/beta hydrolase	NA	A0A220NSH5	Mycobacterium_phage	27.8	6.3e-10
>prophage 94
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1509400	1513662	4820221		Sinorhizobium_phage(50.0%)	4	NA	NA
AVH90690.1|1509400_1511950_-	DNA ligase D	NA	A0A291AUP8	Sinorhizobium_phage	33.8	5.0e-38
AVH90691.1|1511963_1512140_-	DUF3606 domain-containing protein	NA	NA	NA	NA	NA
AVH90692.1|1512391_1512889_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
AVH90693.1|1512927_1513662_-	endonuclease	NA	A0A1V0S994	Catovirus	26.5	5.9e-08
>prophage 95
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1527246	1529757	4820221		Hokovirus(100.0%)	1	NA	NA
AVH90713.1|1527246_1529757_+	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	28.5	4.8e-09
>prophage 96
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1545976	1550441	4820221		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
AVH90722.1|1545976_1547254_+	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	26.1	1.7e-23
AVH90723.1|1548847_1549624_-	ABC transporter permease	NA	NA	NA	NA	NA
AVH90724.1|1549607_1550441_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.1	1.5e-31
>prophage 97
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1553788	1556437	4820221		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AVH90727.1|1553788_1556437_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	33.5	4.4e-154
>prophage 98
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1562690	1563320	4820221		Stenotrophomonas_phage(100.0%)	1	NA	NA
AVH90737.1|1562690_1563320_-	hypothetical protein	NA	B7SYF7	Stenotrophomonas_phage	57.4	1.3e-32
>prophage 99
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1615509	1622859	4820221		Trichoplusia_ni_ascovirus(25.0%)	6	NA	NA
AVH90783.1|1615509_1616376_+	3-oxoacyl-ACP reductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	43.7	2.1e-52
AVH90784.1|1616381_1616975_+	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AVH90785.1|1617092_1619036_-	MacB family efflux pump subunit	NA	G9BWD6	Planktothrix_phage	41.2	8.5e-30
AVH90786.1|1619038_1620220_-	efflux RND transporter periplasmic adaptor subunit	NA	A0A140XAI1	Dickeya_phage	41.6	1.1e-11
AVH90787.1|1620549_1621014_+	hypothetical protein	NA	NA	NA	NA	NA
AVH90788.1|1621782_1622859_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	24.2	1.2e-17
>prophage 100
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1628525	1629191	4820221		Stenotrophomonas_phage(100.0%)	1	NA	NA
AVH90792.1|1628525_1629191_-	conjugal transfer protein	NA	S0F2N7	Stenotrophomonas_phage	61.6	6.7e-59
>prophage 101
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1636812	1639572	4820221		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
AVH90801.1|1636812_1639572_+	magnesium-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	24.7	4.3e-35
>prophage 102
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1662316	1666049	4820221		Planktothrix_phage(50.0%)	5	NA	NA
AVH90824.1|1662316_1663012_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	2.5e-16
AVH90825.1|1663008_1663542_-	DUF2796 domain-containing protein	NA	NA	NA	NA	NA
AVH90826.1|1663574_1664048_+	MerC domain-containing protein	NA	NA	NA	NA	NA
AVH90827.1|1664224_1665127_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AVH90828.1|1665245_1666049_+	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	35.4	2.0e-33
>prophage 103
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1681651	1683139	4820221		Burkholderia_virus(100.0%)	1	NA	NA
AVH90843.1|1681651_1683139_+	proline/glycine betaine transporter ProP	NA	Q6JIH2	Burkholderia_virus	31.8	3.1e-56
>prophage 104
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1748972	1751893	4820221		Salmonella_phage(50.0%)	3	NA	NA
AVH90890.1|1748972_1749401_+	PAS sensor domain-containing protein	NA	A0A1B0V854	Salmonella_phage	43.2	3.0e-20
AVH90891.1|1749397_1750927_+	sulfite reductase flavoprotein subunit alpha	NA	NA	NA	NA	NA
AVH90892.1|1751224_1751893_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.5	2.1e-20
>prophage 105
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1769451	1770126	4820221		Bacillus_phage(100.0%)	1	NA	NA
AVH90913.1|1769451_1770126_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	30.2	3.2e-24
>prophage 106
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1780510	1784401	4820221		Tupanvirus(100.0%)	1	NA	NA
AVH90925.1|1780510_1784401_-	enterobactin synthase subunit F	NA	A0A2K9KZV5	Tupanvirus	30.3	5.3e-63
>prophage 107
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1793265	1793895	4820221		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
AVH90935.1|1793265_1793895_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	67.5	5.7e-76
>prophage 108
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1803105	1813415	4820221	holin	Listeria_phage(60.0%)	6	NA	NA
AVH90946.1|1803105_1803573_-	flavodoxin	NA	A8ASW0	Listeria_phage	30.7	1.9e-15
AVH90947.1|1803598_1804639_-	ribonucleotide-diphosphate reductase subunit beta	NA	A8ASV9	Listeria_phage	76.6	1.7e-154
AVH90948.1|1804738_1807102_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A088FNW1	Listeria_phage	69.6	3.6e-301
AVH90949.1|1807532_1808510_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AVH93529.1|1808741_1811369_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	26.1	1.9e-56
AVH90950.1|1811435_1813415_-|holin	high-affinity choline transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	26.1	5.8e-18
>prophage 109
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1826011	1827699	4820221	transposase	Bacillus_virus(50.0%)	2	NA	NA
AVH90961.1|1826011_1826728_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	37.8	8.6e-12
AVH90962.1|1826784_1827699_-|transposase	IS110 family transposase ISStma6	transposase	Q75QL1	Wolbachia_phage	34.9	7.1e-27
>prophage 110
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1851129	1851954	4820221		Mycobacterium_phage(100.0%)	1	NA	NA
AVH90983.1|1851129_1851954_+	alpha/beta hydrolase	NA	A0A2P1CHW5	Mycobacterium_phage	30.3	1.9e-15
>prophage 111
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1871791	1874518	4820221		Acinetobacter_phage(100.0%)	1	NA	NA
AVH91000.1|1871791_1874518_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	46.0	2.5e-221
>prophage 112
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1884547	1885306	4820221		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
AVH91011.1|1884547_1885306_-	SDR family NAD(P)-dependent oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.5	1.7e-13
>prophage 113
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1902619	1905730	4820221		Saccharomonospora_phage(100.0%)	1	NA	NA
AVH91028.1|1902619_1905730_+	error-prone DNA polymerase	NA	Q8W6C3	Saccharomonospora_phage	30.3	2.8e-83
>prophage 114
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1929702	1932959	4820221		Bacillus_phage(50.0%)	2	NA	NA
AVH91050.1|1929702_1931136_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.3	3.1e-13
AVH91051.1|1931132_1932959_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.4	2.9e-11
>prophage 115
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1936180	1938370	4820221		Bacillus_phage(100.0%)	1	NA	NA
AVH91054.1|1936180_1938370_-	PAS domain S-box protein	NA	A0A127AWB9	Bacillus_phage	32.5	2.0e-19
>prophage 116
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1951578	1953957	4820221		Hokovirus(100.0%)	1	NA	NA
AVH91069.1|1951578_1953957_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	36.3	1.2e-171
>prophage 117
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1957602	1958775	4820221	tRNA	Vibrio_phage(50.0%)	2	NA	NA
AVH91073.1|1957602_1958175_-	oligoribonuclease	NA	M4M9I5	Vibrio_phage	36.0	2.3e-23
AVH91074.1|1958250_1958775_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	41.1	7.9e-07
>prophage 118
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1965554	1966559	4820221		Erwinia_phage(100.0%)	1	NA	NA
AVH91084.1|1965554_1966559_-	lytic enzyme	NA	W6ARR1	Erwinia_phage	35.8	2.5e-25
>prophage 119
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1982554	1982974	4820221		Mannheimia_phage(100.0%)	1	NA	NA
AVH91100.1|1982554_1982974_+	HD domain-containing protein	NA	A0A0M3LQS1	Mannheimia_phage	35.7	6.1e-10
>prophage 120
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	1998991	2001739	4820221		Bacillus_phage(100.0%)	1	NA	NA
AVH91118.1|1998991_2001739_+	helicase IV	NA	A7KV33	Bacillus_phage	26.1	6.2e-10
>prophage 121
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2005551	2006832	4820221	tRNA	uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AVH91123.1|2005551_2006832_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	54.7	5.3e-97
>prophage 122
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2011091	2012177	4820221		Streptococcus_phage(100.0%)	1	NA	NA
AVH91128.1|2011091_2012177_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	47.9	3.4e-84
>prophage 123
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2015546	2017124	4820221	transposase	Moraxella_phage(50.0%)	3	NA	NA
AVH91133.1|2015546_2015939_-	HicB family protein	NA	A0A0R6PJ17	Moraxella_phage	35.3	1.0e-11
AVH93534.1|2015947_2016130_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
AVH91134.1|2016209_2017124_-|transposase	IS110 family transposase ISStma6	transposase	Q75QL1	Wolbachia_phage	34.9	7.1e-27
>prophage 124
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2020774	2022316	4820221		Catovirus(100.0%)	1	NA	NA
AVH91137.1|2020774_2022316_+	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	41.6	3.2e-80
>prophage 125
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2049413	2052128	4820221		Bacillus_virus(100.0%)	1	NA	NA
AVH91159.1|2049413_2052128_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	2.2e-108
>prophage 126
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2055813	2059686	4820221		Ralstonia_phage(50.0%)	2	NA	NA
AVH91164.1|2055813_2058279_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	39.7	4.4e-116
AVH91165.1|2058561_2059686_+	pyridoxal phosphate-dependent aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	22.9	1.5e-15
>prophage 127
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2066870	2068265	4820221	tRNA	Moumouvirus(100.0%)	1	NA	NA
AVH91173.1|2066870_2068265_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	39.2	3.8e-80
>prophage 128
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2092456	2094491	4820221		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
AVH91193.1|2092456_2093386_+	methyltransferase domain-containing protein	NA	A0A2H4J145	uncultured_Caudovirales_phage	45.6	1.2e-05
AVH91194.1|2093399_2094491_+	5-methyltetrahydrofolate--homocysteine methyltransferase	NA	A0A140XBC7	Dickeya_phage	60.0	3.9e-16
>prophage 129
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2099481	2104355	4820221		Bacillus_phage(50.0%)	6	NA	NA
AVH91199.1|2099481_2100831_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	39.1	1.9e-76
AVH91200.1|2100854_2101832_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
AVH91201.1|2101928_2102516_-	glutathione peroxidase	NA	NA	NA	NA	NA
AVH91202.1|2102881_2103118_+	hypothetical protein	NA	NA	NA	NA	NA
AVH91203.1|2103120_2103480_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AVH91204.1|2103479_2104355_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.9	1.5e-10
>prophage 130
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2109285	2110653	4820221		Bodo_saltans_virus(100.0%)	1	NA	NA
AVH91210.1|2109285_2110653_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.2	4.8e-112
>prophage 131
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2117974	2119411	4820221		Erysipelothrix_phage(100.0%)	1	NA	NA
AVH91215.1|2117974_2119411_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.8	1.0e-35
>prophage 132
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2124201	2128521	4820221		Escherichia_phage(33.33%)	3	NA	NA
AVH91220.1|2124201_2125632_-	replicative DNA helicase	NA	O80281	Escherichia_phage	53.0	4.2e-119
AVH91221.1|2125949_2126510_-	NADPH-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	36.8	1.3e-15
AVH91222.1|2126544_2128521_-	asparagine synthase (glutamine-hydrolyzing)	NA	A0A1B1ISV2	uncultured_Mediterranean_phage	30.3	1.8e-27
>prophage 133
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2136486	2139033	4820221		Lactococcus_phage(50.0%)	4	NA	NA
AVH91230.1|2136486_2136696_-	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	61.3	9.8e-17
AVH91231.1|2136932_2137418_+	DUF456 domain-containing protein	NA	NA	NA	NA	NA
AVH91232.1|2137537_2138692_+	phospholipase	NA	NA	NA	NA	NA
AVH91233.1|2138691_2139033_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	51.3	1.6e-24
>prophage 134
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2144698	2157139	4820221	protease	Bacillus_phage(16.67%)	12	NA	NA
AVH91240.1|2144698_2146570_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	40.1	3.5e-28
AVH91241.1|2146650_2147430_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AVH91242.1|2147508_2147988_-	glutathione peroxidase	NA	A0A1S7DM81	Molluscum_contagiosum_virus	34.8	3.1e-10
AVH91243.1|2148118_2150287_+	M3 family peptidase	NA	A0A1V0SID3	Klosneuvirus	24.5	1.0e-39
AVH91244.1|2150413_2151529_-	cyclopropane-fatty-acyl-phospholipid synthase	NA	A0A2K9L0U7	Tupanvirus	42.0	5.0e-75
AVH91245.1|2151548_2152430_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AVH91246.1|2152467_2152770_-	N-acetyltransferase	NA	NA	NA	NA	NA
AVH91247.1|2152925_2153141_+	hypothetical protein	NA	NA	NA	NA	NA
AVH91248.1|2153197_2153824_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AVH91249.1|2153831_2155397_-	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	26.6	6.4e-28
AVH91250.1|2155560_2156409_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
AVH91251.1|2156527_2157139_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	69.8	9.7e-81
>prophage 135
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2182719	2183595	4820221		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AVH91272.1|2182719_2183595_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	32.2	1.3e-22
>prophage 136
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2191169	2191799	4820221		Staphylococcus_phage(100.0%)	1	NA	NA
AVH91280.1|2191169_2191799_+	heme ABC exporter ATP-binding protein CcmA	NA	A0A2H4PQG7	Staphylococcus_phage	25.3	7.5e-12
>prophage 137
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2199661	2203077	4820221		Bacillus_phage(100.0%)	2	NA	NA
AVH91291.1|2199661_2201335_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	24.3	2.5e-17
AVH91292.1|2201331_2203077_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	28.3	6.9e-23
>prophage 138
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2214132	2216558	4820221		Streptococcus_phage(100.0%)	2	NA	NA
AVH91301.1|2214132_2215404_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	48.3	1.0e-92
AVH91302.1|2215400_2216558_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	37.7	3.3e-45
>prophage 139
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2225710	2227087	4820221	tRNA	Megavirus(100.0%)	1	NA	NA
AVH91311.1|2225710_2227087_+|tRNA	cysteine--tRNA ligase	tRNA	L7Y4R1	Megavirus	33.5	6.4e-40
>prophage 140
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2232532	2233441	4820221		Microcystis_phage(100.0%)	1	NA	NA
AVH91317.1|2232532_2233441_+	peptidase M23	NA	A0A075BS18	Microcystis_phage	43.0	6.2e-15
>prophage 141
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2249823	2253456	4820221		Wolbachia_phage(50.0%)	2	NA	NA
AVH91334.1|2249823_2251728_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	35.1	1.7e-83
AVH91335.1|2251893_2253456_-	N-acetylmuramoyl-L-alanine amidase	NA	Q0H257	Geobacillus_phage	28.2	5.6e-16
>prophage 142
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2256640	2261376	4820221		Catovirus(50.0%)	3	NA	NA
AVH91339.1|2256640_2257972_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SC03	Catovirus	35.1	1.4e-31
AVH91340.1|2258498_2259395_-	M48 family peptidase	NA	NA	NA	NA	NA
AVH91341.1|2259483_2261376_-	serine/threonine kinase	NA	A0A075BSL8	Microcystis_phage	33.9	8.0e-25
>prophage 143
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2268770	2270507	4820221		Trichoplusia_ni_ascovirus(50.0%)	2	NA	NA
AVH91346.1|2268770_2269532_-	KR domain-containing protein	NA	Q06VL0	Trichoplusia_ni_ascovirus	28.7	7.5e-14
AVH91347.1|2269664_2270507_+	6-O-methylguanine DNA methyltransferase	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	48.4	1.0e-16
>prophage 144
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2276014	2276680	4820221		Salicola_phage(100.0%)	1	NA	NA
AVH91352.1|2276014_2276680_+	HNH endonuclease	NA	A0A248SKR4	Salicola_phage	45.5	1.0e-38
>prophage 145
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2283100	2283709	4820221	protease	Agrobacterium_phage(100.0%)	1	NA	NA
AVH91362.1|2283100_2283709_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	51.5	3.1e-55
>prophage 146
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2287783	2295126	4820221	tRNA	Tupanvirus(50.0%)	7	NA	NA
AVH91371.1|2287783_2288083_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	2.7e-12
AVH91372.1|2288110_2290492_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AVH91373.1|2290612_2291608_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	36.0	4.7e-32
AVH91374.1|2291800_2292160_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AVH91375.1|2292171_2292369_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AVH91376.1|2292633_2293176_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	37.7	1.5e-16
AVH91377.1|2293224_2295126_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	35.8	2.8e-126
>prophage 147
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2298296	2299487	4820221		Lymantria_xylina_nucleopolyhedrovirus(100.0%)	1	NA	NA
AVH91382.1|2298296_2299487_-	chitinase	NA	D4N2A3	Lymantria_xylina_nucleopolyhedrovirus	28.9	6.0e-26
>prophage 148
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2303990	2306636	4820221		Cafeteria_roenbergensis_virus(100.0%)	1	NA	NA
AVH91387.1|2303990_2306636_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	30.2	8.1e-23
>prophage 149
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2331842	2332883	4820221		Tupanvirus(100.0%)	1	NA	NA
AVH91410.1|2331842_2332883_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	44.3	2.0e-73
>prophage 150
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2338395	2339283	4820221		Burkholderia_virus(100.0%)	1	NA	NA
AVH91416.1|2338395_2339283_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	3.5e-15
>prophage 151
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2344482	2352847	4820221		Streptococcus_phage(25.0%)	8	NA	NA
AVH91422.1|2344482_2345520_-	D-glycerate dehydrogenase	NA	M1NSB9	Streptococcus_phage	25.9	2.8e-11
AVH91423.1|2345512_2346616_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.5	2.0e-76
AVH91424.1|2346612_2347542_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AVH91425.1|2347665_2348316_+	SCO family protein	NA	NA	NA	NA	NA
AVH91426.1|2348312_2349155_+	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AVH91427.1|2349246_2349594_-	ribonuclease E inhibitor RraB	NA	NA	NA	NA	NA
AVH91428.1|2349615_2351220_-	lytic transglycosylase	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	27.7	1.2e-10
AVH91429.1|2351341_2352847_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	46.5	1.3e-86
>prophage 152
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2357368	2372614	4820221		Acinetobacter_phage(60.0%)	7	NA	NA
AVH91434.1|2357368_2357941_-	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	69.7	2.0e-72
AVH91435.1|2358023_2358878_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AVH91436.1|2359092_2361900_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	31.3	1.4e-113
AVH91437.1|2362258_2365081_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	31.6	1.4e-110
AVH91438.1|2365220_2367254_+	S9 family peptidase	NA	NA	NA	NA	NA
AVH91439.1|2367440_2370323_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	26.1	4.5e-35
AVH93544.1|2370511_2372614_+	peptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	31.5	8.2e-79
>prophage 153
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2382704	2384063	4820221		Erysipelothrix_phage(100.0%)	1	NA	NA
AVH91445.1|2382704_2384063_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.7	2.1e-35
>prophage 154
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2387252	2388697	4820221		Clostridioides_phage(50.0%)	2	NA	NA
AVH93547.1|2387252_2387792_+	peptidoglycan endopeptidase	NA	A0A1V0DZX6	Clostridioides_phage	43.5	1.8e-22
AVH91449.1|2387923_2388697_+	peptidoglycan endopeptidase	NA	A0A0A8WIF2	Clostridium_phage	42.5	8.4e-21
>prophage 155
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2407685	2410523	4820221		Acinetobacter_phage(100.0%)	1	NA	NA
AVH91465.1|2407685_2410523_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	25.7	1.4e-52
>prophage 156
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2415686	2429990	4820221	tRNA	Staphylococcus_phage(20.0%)	11	NA	NA
AVH93549.1|2415686_2418329_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	41.1	7.7e-175
AVH91471.1|2418434_2419037_-	DUF998 domain-containing protein	NA	NA	NA	NA	NA
AVH91472.1|2419161_2420019_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	43.4	2.7e-12
AVH91473.1|2420172_2421840_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
AVH91474.1|2421836_2423462_+	CHASE2 domain-containing protein	NA	A0A127AWB9	Bacillus_phage	29.0	5.7e-11
AVH91475.1|2423536_2423989_+	DUF4442 domain-containing protein	NA	NA	NA	NA	NA
AVH91476.1|2423996_2425313_-	hypothetical protein	NA	NA	NA	NA	NA
AVH91477.1|2425389_2426085_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.6	1.1e-08
AVH91478.1|2426081_2426867_+	hypothetical protein	NA	NA	NA	NA	NA
AVH91479.1|2426962_2428903_+	DUF885 domain-containing protein	NA	NA	NA	NA	NA
AVH91480.1|2428919_2429990_+	serine hydrolase	NA	A0A0Y0A2S9	Mycobacterium_phage	28.9	1.1e-18
>prophage 157
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2449414	2449681	4820221		Aeromonas_phage(100.0%)	1	NA	NA
AVH93551.1|2449414_2449681_-	DksA/TraR family C4-type zinc finger protein	NA	A0A219YCQ3	Aeromonas_phage	47.7	1.9e-12
>prophage 158
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2464163	2465771	4820221		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AVH91514.1|2464163_2465771_+	ATP-dependent DNA ligase	NA	A0A2H4JD86	uncultured_Caudovirales_phage	28.1	5.6e-11
>prophage 159
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2470681	2470888	4820221		Lake_Baikal_phage(100.0%)	1	NA	NA
AVH91519.1|2470681_2470888_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	69.1	7.1e-20
>prophage 160
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2474856	2476191	4820221		Streptococcus_phage(100.0%)	1	NA	NA
AVH91525.1|2474856_2476191_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	25.6	1.2e-27
>prophage 161
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2479207	2486245	4820221	protease	Tetraselmis_virus(25.0%)	7	NA	NA
AVH91528.1|2479207_2479888_-	ribonuclease III	NA	A0A2P0VNZ5	Tetraselmis_virus	40.6	3.5e-15
AVH91529.1|2479877_2480261_-	DUF4845 domain-containing protein	NA	NA	NA	NA	NA
AVH91530.1|2480313_2481108_-	signal peptidase I	NA	NA	NA	NA	NA
AVH91531.1|2481162_2482971_-	elongation factor 4	NA	A0A2K9L6L3	Tupanvirus	41.9	7.2e-23
AVH91532.1|2483136_2484672_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	27.9	2.6e-26
AVH91533.1|2484746_2485628_-	anti-sigma factor	NA	NA	NA	NA	NA
AVH91534.1|2485624_2486245_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	27.7	2.3e-05
>prophage 162
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2498336	2499050	4820221		Bacillus_phage(100.0%)	1	NA	NA
AVH91545.1|2498336_2499050_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	34.4	9.7e-24
>prophage 163
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2509284	2525465	4820221		Prochlorococcus_phage(20.0%)	14	NA	NA
AVH91552.1|2509284_2512152_+	glycine dehydrogenase	NA	M4QFZ1	Prochlorococcus_phage	51.9	6.2e-263
AVH91553.1|2512245_2512656_-	VOC family protein	NA	NA	NA	NA	NA
AVH91554.1|2512759_2514127_-	amino acid permease	NA	NA	NA	NA	NA
AVH91555.1|2514209_2514932_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AVH91556.1|2515046_2517137_+	catalase HPII	NA	A0A2K9L572	Tupanvirus	48.7	3.9e-137
AVH91557.1|2517159_2517651_+	hypothetical protein	NA	NA	NA	NA	NA
AVH91558.1|2517660_2518401_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVH91559.1|2518541_2519081_+	hypothetical protein	NA	NA	NA	NA	NA
AVH91560.1|2519095_2519386_+	hypothetical protein	NA	NA	NA	NA	NA
AVH91561.1|2519475_2521602_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	68.8	1.3e-07
AVH91562.1|2521834_2522797_+	murein L,D-transpeptidase	NA	NA	NA	NA	NA
AVH91563.1|2522801_2523458_+	M23 family peptidase	NA	A0A7K9	Microcystis_virus	35.9	2.5e-10
AVH91564.1|2523393_2524056_-	hypothetical protein	NA	NA	NA	NA	NA
AVH91565.1|2524172_2525465_-	adenylosuccinate synthase	NA	A0A2R8FF47	Brazilian_cedratvirus	38.6	1.2e-75
>prophage 164
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2529412	2531509	4820221		Bacillus_phage(33.33%)	3	NA	NA
AVH93556.1|2529412_2529784_+	response regulator	NA	W8CYM9	Bacillus_phage	32.1	6.0e-09
AVH91570.1|2529872_2530766_-	cytochrome C biogenesis protein	NA	F2Y2Y5	Organic_Lake_phycodnavirus	45.2	2.3e-06
AVH91571.1|2531026_2531509_+	peroxiredoxin	NA	A0A1D8KSL1	Synechococcus_phage	40.6	1.4e-26
>prophage 165
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2556439	2565557	4820221		Hokovirus(66.67%)	3	NA	NA
AVH91590.1|2556439_2557849_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	28.4	2.1e-22
AVH91591.1|2558392_2561920_-	histidine kinase	NA	A0A1V0SGX0	Hokovirus	34.0	1.1e-46
AVH91592.1|2562014_2565557_-	histidine kinase	NA	A0A1V0SGX0	Hokovirus	32.6	3.0e-41
>prophage 166
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2569562	2570558	4820221		Mycobacterium_phage(100.0%)	1	NA	NA
AVH91598.1|2569562_2570558_+	alpha/beta hydrolase	NA	A0A0B5A484	Mycobacterium_phage	37.3	6.3e-05
>prophage 167
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2574335	2575217	4820221		Corynebacterium_phage(100.0%)	1	NA	NA
AVH91602.1|2574335_2575217_+	M23 family peptidase	NA	A0A1W6JQH9	Corynebacterium_phage	38.1	6.4e-09
>prophage 168
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2580545	2587471	4820221		Salmonella_phage(50.0%)	5	NA	NA
AVH91606.1|2580545_2581565_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	43.2	6.4e-69
AVH91607.1|2581611_2582361_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
AVH91608.1|2582438_2583332_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
AVH91609.1|2583448_2584294_+	hypothetical protein	NA	NA	NA	NA	NA
AVH91610.1|2584513_2587471_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	25.3	1.2e-19
>prophage 169
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2601959	2618843	4820221		Acanthamoeba_polyphaga_lentillevirus(20.0%)	12	NA	NA
AVH91624.1|2601959_2602919_-	SPFH/Band 7/PHB domain protein	NA	J3IZE5	Acanthamoeba_polyphaga_lentillevirus	30.4	2.1e-21
AVH91625.1|2602985_2603288_-	DUF962 domain-containing protein	NA	NA	NA	NA	NA
AVH91626.1|2603413_2603743_-	YnfA family protein	NA	A0A218MNG8	uncultured_virus	53.9	1.1e-25
AVH91627.1|2603739_2604579_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
AVH91628.1|2604592_2605396_-	3'(2'),5'-bisphosphate nucleotidase	NA	NA	NA	NA	NA
AVH91629.1|2605392_2605956_-	ADP compounds hydrolase NudE	NA	NA	NA	NA	NA
AVH91630.1|2606000_2607425_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	20.7	1.5e-12
AVH91631.1|2607415_2608153_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AVH91632.1|2608255_2608720_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AVH91633.1|2608716_2610042_-	chemotaxis protein	NA	NA	NA	NA	NA
AVH91634.1|2610028_2616706_-	hybrid sensor histidine kinase/response regulator	NA	W8CYM9	Bacillus_phage	33.6	1.6e-14
AVH91635.1|2616806_2618843_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	46.5	2.8e-15
>prophage 170
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2623499	2625548	4820221		Bacillus_phage(100.0%)	1	NA	NA
AVH91642.1|2623499_2625548_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	31.9	1.7e-89
>prophage 171
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2635814	2642872	4820221		Indivirus(33.33%)	3	NA	NA
AVH91649.1|2635814_2639900_-	ATP-dependent RNA helicase HrpA	NA	A0A1V0SDF7	Indivirus	28.5	2.8e-51
AVH91650.1|2639986_2640535_+	DNA starvation/stationary phase protection protein	NA	A0A2H4N7L5	Lake_Baikal_phage	33.8	5.7e-16
AVH91651.1|2641066_2642872_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	34.5	2.3e-82
>prophage 172
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2652525	2687938	4820221	portal,integrase,terminase	Stenotrophomonas_phage(100.0%)	42	2651172:2651218	2689899:2689945
2651172:2651218	attL	TGGTGGGCCGTGAAGGATTCGAACCTTCGACCAAAAGATTAAAAGTC	NA	NA	NA	NA
AVH93559.1|2652525_2653032_-	hypothetical protein	NA	B7SYF7	Stenotrophomonas_phage	91.0	3.8e-83
AVH91663.1|2653276_2653942_+	SOS response-associated peptidase	NA	B7SYF4	Stenotrophomonas_phage	96.4	1.0e-123
AVH91664.1|2653945_2654737_-	restriction endonuclease subunit M	NA	B7SYF3	Stenotrophomonas_phage	97.3	1.1e-153
AVH91665.1|2654884_2655118_-	hypothetical protein	NA	B7SYF2	Stenotrophomonas_phage	89.6	7.5e-34
AVH93560.1|2655107_2656838_-	hypothetical protein	NA	B7SYF1	Stenotrophomonas_phage	79.1	1.2e-179
AVH91666.1|2657302_2658304_-	hypothetical protein	NA	B7SYF0	Stenotrophomonas_phage	34.2	4.4e-38
AVH91667.1|2658300_2661906_-	hypothetical protein	NA	B7SYE9	Stenotrophomonas_phage	81.5	0.0e+00
AVH91668.1|2661909_2662326_-	hypothetical protein	NA	B7SYE8	Stenotrophomonas_phage	84.8	1.8e-62
AVH91669.1|2662325_2666075_-	Laminin subunit alpha-2	NA	B7SYE7	Stenotrophomonas_phage	70.9	0.0e+00
AVH91670.1|2666067_2666718_-	hypothetical protein	NA	B7SYE6	Stenotrophomonas_phage	90.7	1.5e-108
AVH91671.1|2666789_2667590_-	hypothetical protein	NA	B7SYE5	Stenotrophomonas_phage	96.2	2.4e-143
AVH93561.1|2667603_2668023_-	hypothetical protein	NA	B7SYE4	Stenotrophomonas_phage	81.3	2.5e-56
AVH91672.1|2668078_2668423_-	hypothetical protein	NA	B7SYE3	Stenotrophomonas_phage	70.2	1.2e-35
AVH91673.1|2668419_2668911_-	endopeptidase	NA	B7SYE1	Stenotrophomonas_phage	85.9	2.8e-62
AVH91674.1|2668907_2669246_-	hypothetical protein	NA	B7SYE0	Stenotrophomonas_phage	92.0	9.2e-49
AVH91675.1|2669242_2669674_-	structural protein P5	NA	B7SYD9	Stenotrophomonas_phage	93.0	2.2e-71
AVH91676.1|2669754_2670120_-	DUF2190 domain-containing protein	NA	B7SYD8	Stenotrophomonas_phage	93.4	5.1e-53
AVH91677.1|2670142_2672125_-	peptidase S14	NA	B7SYD7	Stenotrophomonas_phage	99.1	0.0e+00
AVH91678.1|2672121_2673612_-|portal	phage portal protein	portal	B7SYD6	Stenotrophomonas_phage	99.2	1.8e-285
AVH91679.1|2673613_2673829_-	hypothetical protein	NA	B7SYD5	Stenotrophomonas_phage	98.6	1.6e-30
AVH91680.1|2673908_2674229_-	hypothetical protein	NA	B7SYD4	Stenotrophomonas_phage	95.2	8.7e-49
AVH91681.1|2674222_2676148_-|terminase	phage terminase large subunit family protein	terminase	B7SYD3	Stenotrophomonas_phage	96.7	0.0e+00
AVH91682.1|2676144_2676789_-	hypothetical protein	NA	B7SYD2	Stenotrophomonas_phage	79.9	3.2e-74
AVH93562.1|2676781_2677132_-	hypothetical protein	NA	B7SYD1	Stenotrophomonas_phage	73.3	1.6e-40
AVH91683.1|2677131_2679546_-	DNA primase	NA	B7SYD0	Stenotrophomonas_phage	95.8	0.0e+00
AVH91684.1|2679721_2679952_-	hypothetical protein	NA	B7SYH7	Stenotrophomonas_phage	80.3	7.4e-26
AVH91685.1|2679953_2680484_-	hypothetical protein	NA	B7SYH6	Stenotrophomonas_phage	83.5	2.4e-80
AVH91686.1|2680482_2680800_+	hypothetical protein	NA	NA	NA	NA	NA
AVH91687.1|2680807_2681149_-	hypothetical protein	NA	NA	NA	NA	NA
AVH91688.1|2681211_2681745_+	hypothetical protein	NA	NA	NA	NA	NA
AVH91689.1|2681851_2682052_+	hypothetical protein	NA	NA	NA	NA	NA
AVH91690.1|2682061_2682355_-	hypothetical protein	NA	NA	NA	NA	NA
AVH91691.1|2682636_2682861_+	hypothetical protein	NA	NA	NA	NA	NA
AVH91692.1|2682857_2683178_+	hypothetical protein	NA	B7SYG3	Stenotrophomonas_phage	56.1	8.3e-07
AVH91693.1|2683320_2683647_+	hypothetical protein	NA	NA	NA	NA	NA
AVH91694.1|2683661_2683934_+	hypothetical protein	NA	NA	NA	NA	NA
AVH91695.1|2683930_2684257_+	hypothetical protein	NA	NA	NA	NA	NA
AVH91696.1|2684253_2684493_+	hypothetical protein	NA	B7SYG8	Stenotrophomonas_phage	72.2	4.8e-28
AVH91697.1|2684489_2684978_+	hypothetical protein	NA	B7SYG7	Stenotrophomonas_phage	91.9	5.0e-80
AVH91698.1|2685117_2685828_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93563.1|2686544_2686784_+	hypothetical protein	NA	NA	NA	NA	NA
AVH91699.1|2686780_2687938_+|integrase	integrase	integrase	V9IQN0	Stenotrophomonas_phage	39.2	1.3e-70
2689899:2689945	attR	TGGTGGGCCGTGAAGGATTCGAACCTTCGACCAAAAGATTAAAAGTC	NA	NA	NA	NA
>prophage 173
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2691241	2692687	4820221		Vibrio_phage(50.0%)	2	NA	NA
AVH91704.1|2691241_2691907_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2I7S903	Vibrio_phage	35.9	7.0e-24
AVH91705.1|2691985_2692687_-	radical SAM protein	NA	J9PV61	Bacillus_phage	42.4	1.1e-38
>prophage 174
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2698553	2701903	4820221		uncultured_virus(50.0%)	2	NA	NA
AVH91713.1|2698553_2699594_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	28.2	1.0e-05
AVH91714.1|2699983_2701903_-	potassium transporter Kup	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	32.5	2.5e-74
>prophage 175
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2710391	2720645	4820221		Salmonella_phage(25.0%)	6	NA	NA
AVH91725.1|2710391_2711303_-	L2 family class A beta-lactamase	NA	A0A1B0VBP7	Salmonella_phage	48.2	1.6e-58
AVH91726.1|2711478_2712345_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AVH91727.1|2712423_2714289_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.7	9.9e-68
AVH91728.1|2714624_2717012_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	23.4	1.9e-18
AVH91729.1|2717212_2718910_+	Kef family K(+) transporter	NA	NA	NA	NA	NA
AVH91730.1|2719358_2720645_-	aminotransferase class V-fold PLP-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	29.2	6.7e-15
>prophage 176
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2723864	2726450	4820221		Escherichia_phage(100.0%)	1	NA	NA
AVH91734.1|2723864_2726450_-	ATP-dependent chaperone ClpB	NA	A0A1C3S747	Escherichia_phage	37.7	1.4e-125
>prophage 177
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2730619	2737594	4820221		Ostreococcus_lucimarinus_virus(50.0%)	5	NA	NA
AVH91738.1|2730619_2732338_-	pyruvate oxidase	NA	E5ERI2	Ostreococcus_lucimarinus_virus	22.4	5.1e-18
AVH93564.1|2732447_2733302_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
AVH91739.1|2733566_2734424_-	hypothetical protein	NA	NA	NA	NA	NA
AVH91740.1|2734460_2734943_-	DUF3574 domain-containing protein	NA	NA	NA	NA	NA
AVH91741.1|2735158_2737594_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	35.0	1.0e-11
>prophage 178
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2747155	2750055	4820221	transposase	Wolbachia_phage(50.0%)	2	NA	NA
AVH91749.1|2747155_2748070_-|transposase	IS110 family transposase ISStma6	transposase	Q75QL1	Wolbachia_phage	34.9	7.1e-27
AVH93567.1|2748420_2750055_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.8	8.6e-92
>prophage 179
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2764326	2767174	4820221		Feldmannia_irregularis_virus(50.0%)	4	NA	NA
AVH91762.1|2764326_2765004_-	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	27.4	7.4e-05
AVH91763.1|2765012_2765483_-	hypothetical protein	NA	NA	NA	NA	NA
AVH91764.1|2765572_2766049_-	hypothetical protein	NA	NA	NA	NA	NA
AVH91765.1|2766295_2767174_-	30S ribosomal protein S6--L-glutamate ligase	NA	A0A1D7SYT2	Cyanophage	32.1	2.0e-31
>prophage 180
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2782870	2787099	4820221		Leptospira_phage(100.0%)	2	NA	NA
AVH91781.1|2782870_2785996_-	AcrB/AcrD/AcrF family protein	NA	S5VTK5	Leptospira_phage	23.7	3.4e-81
AVH91782.1|2785992_2787099_-	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	S5VL44	Leptospira_phage	24.3	1.2e-07
>prophage 181
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2791726	2795923	4820221		Streptococcus_phage(33.33%)	4	NA	NA
AVH91787.1|2791726_2792686_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	52.0	7.3e-83
AVH91788.1|2792951_2793551_+	O-acetyl-ADP-ribose deacetylase	NA	F1SVT2	Red_sea_bream_iridovirus	45.7	1.5e-30
AVH91789.1|2793643_2794789_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVH91790.1|2794918_2795923_-	fructose-bisphosphate aldolase class I	NA	A0A0K0KVJ8	Prochlorococcus_phage	48.8	2.1e-80
>prophage 182
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2843829	2844195	4820221		Stx_converting_phage(100.0%)	1	NA	NA
AVH93570.1|2843829_2844195_-	stress-induced protein YgiW	NA	A0A1I9LJU6	Stx_converting_phage	39.8	3.5e-09
>prophage 183
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2851861	2855205	4820221		Orpheovirus(50.0%)	3	NA	NA
AVH91830.1|2851861_2854024_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	38.8	2.3e-12
AVH91831.1|2854129_2854429_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AVH91832.1|2854539_2855205_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	30.9	4.2e-13
>prophage 184
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2862932	2864864	4820221		Tupanvirus(100.0%)	1	NA	NA
AVH93571.1|2862932_2864864_+	selenocysteine-specific translation elongation factor	NA	A0A2K9KZ60	Tupanvirus	32.9	1.1e-18
>prophage 185
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2868240	2868837	4820221		Cassava_brown_streak_virus(100.0%)	1	NA	NA
AVH91843.1|2868240_2868837_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	A0A1K0ISQ7	Cassava_brown_streak_virus	31.9	1.6e-08
>prophage 186
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2881948	2888661	4820221		Klosneuvirus(66.67%)	7	NA	NA
AVH91858.1|2881948_2883238_+	glutamate-1-semialdehyde-2,1-aminomutase	NA	A0A1V0SKB7	Klosneuvirus	25.9	2.6e-11
AVH91859.1|2883310_2883760_-	azurin	NA	NA	NA	NA	NA
AVH91860.1|2883882_2884485_+	hydrolase	NA	NA	NA	NA	NA
AVH91861.1|2884538_2885765_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	23.8	5.0e-20
AVH91862.1|2885828_2886701_+	ion transporter	NA	NA	NA	NA	NA
AVH91863.1|2886756_2887749_-	DUF3829 domain-containing protein	NA	NA	NA	NA	NA
AVH91864.1|2887842_2888661_-	short chain dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	28.2	4.0e-05
>prophage 187
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2892835	2893750	4820221	transposase	Wolbachia_phage(100.0%)	1	NA	NA
AVH91869.1|2892835_2893750_-|transposase	IS110 family transposase ISStma6	transposase	Q75QL1	Wolbachia_phage	34.9	7.1e-27
>prophage 188
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2910478	2915696	4820221		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
AVH91886.1|2910478_2911015_+	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	53.5	1.9e-43
AVH91887.1|2911167_2912289_+	HDOD domain-containing protein	NA	NA	NA	NA	NA
AVH91888.1|2912346_2912553_-	hypothetical protein	NA	NA	NA	NA	NA
AVH91889.1|2912732_2915696_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	24.1	4.9e-37
>prophage 189
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2922418	2923996	4820221		Vibrio_phage(100.0%)	1	NA	NA
AVH91894.1|2922418_2923996_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	26.0	3.4e-21
>prophage 190
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2928024	2932767	4820221		Ostreococcus_lucimarinus_virus(50.0%)	4	NA	NA
AVH91896.1|2928024_2929761_+	acetolactate synthase 2 catalytic subunit	NA	M4QSI1	Ostreococcus_lucimarinus_virus	30.1	6.4e-61
AVH91897.1|2929744_2929996_+	acetolactate synthase	NA	NA	NA	NA	NA
AVH91898.1|2930092_2931184_+	serine/threonine dehydratase	NA	NA	NA	NA	NA
AVH91899.1|2931180_2932767_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	22.8	1.7e-07
>prophage 191
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2963963	2970287	4820221		Tupanvirus(50.0%)	4	NA	NA
AVH91923.1|2963963_2966606_+	PAS domain-containing protein	NA	A0A2K9L5I4	Tupanvirus	26.8	4.3e-08
AVH91924.1|2967164_2967815_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AVH91925.1|2967843_2968899_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVH91926.1|2968895_2970287_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	26.4	7.2e-15
>prophage 192
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	2986085	2986625	4820221		Klosneuvirus(100.0%)	1	NA	NA
AVH91939.1|2986085_2986625_-	DUF924 domain-containing protein	NA	A0A1V0SIY0	Klosneuvirus	33.9	1.3e-17
>prophage 193
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3001586	3002696	4820221		Synechococcus_phage(100.0%)	1	NA	NA
AVH91952.1|3001586_3002696_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	29.5	3.0e-32
>prophage 194
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3009046	3010105	4820221		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
AVH91960.1|3009046_3010105_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	45.7	2.5e-84
>prophage 195
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3023478	3031023	4820221		Acinetobacter_phage(33.33%)	5	NA	NA
AVH91974.1|3023478_3026340_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	24.2	8.4e-42
AVH91975.1|3026732_3027044_+	hypothetical protein	NA	NA	NA	NA	NA
AVH93578.1|3027053_3027461_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AVH91976.1|3027612_3029598_+	lytic murein transglycosylase	NA	I1VXB7	Halocynthia_phage	35.7	5.7e-13
AVH91977.1|3029802_3031023_+	multifunctional CCA addition/repair protein	NA	A0A076G5T8	Escherichia_phage	42.6	4.6e-74
>prophage 196
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3039615	3040644	4820221		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
AVH91983.1|3039615_3040644_-	SIS domain-containing protein	NA	M1HHR4	Paramecium_bursaria_Chlorella_virus	30.2	2.7e-19
>prophage 197
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3047409	3049767	4820221		Bodo_saltans_virus(100.0%)	1	NA	NA
AVH91988.1|3047409_3049767_+	beta-hexosaminidase	NA	A0A2H4UUW7	Bodo_saltans_virus	30.3	1.7e-11
>prophage 198
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3055552	3055993	4820221		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
AVH91995.1|3055552_3055993_-	response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	26.9	4.3e-06
>prophage 199
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3059928	3065111	4820221	protease,tail	Synechococcus_phage(50.0%)	4	NA	NA
AVH92000.1|3059928_3060834_-	6-phosphogluconate dehydrogenase (decarboxylating)	NA	A0A1D8KGX1	Synechococcus_phage	42.9	1.1e-67
AVH92001.1|3060844_3062080_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92002.1|3062097_3062688_-	DUF2242 domain-containing protein	NA	NA	NA	NA	NA
AVH92003.1|3062933_3065111_-|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	31.4	1.6e-80
>prophage 200
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3069251	3071838	4820221		Stx2-converting_phage(50.0%)	2	NA	NA
AVH92008.1|3069251_3070469_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	39.8	1.2e-66
AVH92009.1|3070569_3071838_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	49.5	1.1e-17
>prophage 201
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3080007	3081054	4820221		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
AVH92017.1|3080007_3081054_-	rod shape-determining protein	NA	F2Y0P3	Organic_Lake_phycodnavirus	21.2	2.1e-06
>prophage 202
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3088685	3089108	4820221		Mycobacterium_phage(100.0%)	1	NA	NA
AVH92026.1|3088685_3089108_+	low affinity iron permease family protein	NA	A0A1C9EHA1	Mycobacterium_phage	43.5	1.3e-07
>prophage 203
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3097033	3104519	4820221	protease	Erwinia_phage(33.33%)	8	NA	NA
AVH92031.1|3097033_3098407_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A2H5BJT2	Erwinia_phage	31.1	8.7e-45
AVH92032.1|3098510_3099062_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AVH92033.1|3099147_3100044_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	33.3	2.3e-14
AVH92034.1|3100057_3100732_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AVH92035.1|3100728_3101580_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AVH92036.1|3101572_3101845_-	sugar transporter	NA	NA	NA	NA	NA
AVH92037.1|3101927_3102353_-	DUF454 domain-containing protein	NA	NA	NA	NA	NA
AVH92038.1|3102407_3104519_-	oligopeptidase B	NA	F2Y2Z7	Organic_Lake_phycodnavirus	26.7	3.6e-34
>prophage 204
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3110038	3111046	4820221		Planktothrix_phage(100.0%)	1	NA	NA
AVH92044.1|3110038_3111046_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.7	7.5e-30
>prophage 205
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3120338	3124409	4820221		Paramecium_bursaria_Chlorella_virus(50.0%)	3	NA	NA
AVH92054.1|3120338_3122177_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	44.4	1.3e-136
AVH92055.1|3122380_3123658_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVH92056.1|3123686_3124409_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	2.2e-31
>prophage 206
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3130727	3132095	4820221		Tupanvirus(100.0%)	1	NA	NA
AVH92062.1|3130727_3132095_-	UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	31.1	1.7e-16
>prophage 207
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3142044	3143853	4820221		Erysipelothrix_phage(100.0%)	1	NA	NA
AVH92074.1|3142044_3143853_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.3	2.1e-46
>prophage 208
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3167781	3169254	4820221		Mycobacterium_phage(100.0%)	1	NA	NA
AVH92096.1|3167781_3169254_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	29.7	7.9e-28
>prophage 209
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3187150	3188869	4820221		Mycobacterium_phage(100.0%)	1	NA	NA
AVH93584.1|3187150_3188869_-	serine hydrolase	NA	A0A218M8S6	Mycobacterium_phage	24.6	5.8e-06
>prophage 210
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3200332	3213312	4820221	tRNA	Myxococcus_phage(20.0%)	13	NA	NA
AVH92124.1|3200332_3202327_-	lytic transglycosylase domain-containing protein	NA	Q94MR3	Myxococcus_phage	53.0	2.2e-25
AVH92125.1|3202520_3202988_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92126.1|3203561_3203903_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92127.1|3204069_3204606_-	HNH endonuclease	NA	W6PN91	Citrobacter_phage	44.6	3.0e-09
AVH92128.1|3204602_3204890_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92129.1|3204886_3205090_-	excisionase	NA	NA	NA	NA	NA
AVH92130.1|3205227_3205938_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92131.1|3205994_3206705_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92132.1|3206828_3208043_-	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	48.7	1.4e-102
AVH92133.1|3208744_3210598_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	35.4	2.8e-38
AVH92134.1|3210687_3211128_-|tRNA	D-aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
AVH92135.1|3211189_3212110_+	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AVH92136.1|3212175_3213312_+	GTP cyclohydrolase II RibA	NA	A0A2H4PQS2	Staphylococcus_phage	34.1	1.3e-30
>prophage 211
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3222720	3230775	4820221		Synechococcus_phage(25.0%)	7	NA	NA
AVH92145.1|3222720_3223233_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	39.3	1.3e-17
AVH92146.1|3223359_3224493_+	LysM peptidoglycan-binding domain-containing protein	NA	G3MBQ1	Bacillus_virus	59.2	7.5e-10
AVH92147.1|3224658_3225786_+	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	33.5	3.2e-21
AVH92148.1|3225829_3226303_+	hypothetical protein	NA	NA	NA	NA	NA
AVH92149.1|3226342_3227113_+	DUF4339 domain-containing protein	NA	NA	NA	NA	NA
AVH92150.1|3227162_3228095_+	RDD family protein	NA	NA	NA	NA	NA
AVH92151.1|3228288_3230775_+	DNA topoisomerase I	NA	A0A1V0SCS0	Indivirus	35.8	3.8e-123
>prophage 212
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3234291	3236214	4820221		Acidithiobacillus_phage(100.0%)	1	NA	NA
AVH92157.1|3234291_3236214_-	signal peptide peptidase SppA	NA	K4HZZ6	Acidithiobacillus_phage	29.6	2.2e-09
>prophage 213
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3247641	3248715	4820221		Pandoravirus(100.0%)	1	NA	NA
AVH92169.1|3247641_3248715_-	3-deoxy-7-phosphoheptulonate synthase	NA	S4W5F1	Pandoravirus	48.9	1.6e-83
>prophage 214
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3252406	3253114	4820221		Bacillus_phage(100.0%)	1	NA	NA
AVH92174.1|3252406_3253114_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.7	4.2e-27
>prophage 215
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3256154	3258173	4820221		Vibrio_phage(50.0%)	2	NA	NA
AVH92178.1|3256154_3257804_-	molecular chaperone GroEL	NA	A0A2I7SAK5	Vibrio_phage	62.4	3.7e-175
AVH92179.1|3257885_3258173_-	co-chaperone GroES	NA	A0A221S4A8	uncultured_virus	48.9	4.6e-17
>prophage 216
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3266854	3269392	4820221		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AVH92185.1|3266854_3269392_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.3	9.8e-10
>prophage 217
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3279002	3279797	4820221		Erythrobacter_phage(100.0%)	1	NA	NA
AVH92194.1|3279002_3279797_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	28.5	6.6e-05
>prophage 218
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3296120	3310867	4820221		Prochlorococcus_phage(14.29%)	13	NA	NA
AVH92214.1|3296120_3297704_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	45.6	1.3e-60
AVH92215.1|3297765_3299049_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AVH92216.1|3299127_3299460_-	transcriptional regulator	NA	NA	NA	NA	NA
AVH92217.1|3299443_3299833_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AVH92218.1|3300001_3300877_-	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	37.4	3.7e-41
AVH92219.1|3301155_3301869_-	uracil-DNA glycosylase	NA	A0A2D1AFC0	Eptesicus_fuscus_gammaherpesvirus	48.1	7.6e-53
AVH92220.1|3301878_3302721_-	response regulator	NA	NA	NA	NA	NA
AVH92221.1|3302728_3303676_-	ABC transporter permease	NA	NA	NA	NA	NA
AVH92222.1|3303679_3304366_-	cell division ATP-binding protein FtsE	NA	F2Y165	Organic_Lake_phycodnavirus	27.3	2.9e-09
AVH92223.1|3304543_3306268_-	ATP-dependent RNA helicase RhlB	NA	A0A1V0SBR7	Catovirus	29.9	1.2e-48
AVH92224.1|3306779_3307109_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	41.9	1.2e-13
AVH92225.1|3307337_3309083_+	transcription termination factor Rho	NA	NA	NA	NA	NA
AVH92226.1|3309292_3310867_+	sensor domain-containing diguanylate cyclase	NA	G3MA91	Bacillus_virus	33.1	2.4e-14
>prophage 219
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3319490	3320888	4820221		Clostridium_phage(50.0%)	2	NA	NA
AVH92236.1|3319490_3319784_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0K2SUI2	Clostridium_phage	44.0	1.4e-05
AVH92237.1|3320069_3320888_-	preQ(1) synthase	NA	A0A2I7SAX1	Vibrio_phage	38.9	1.2e-41
>prophage 220
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3339718	3340111	4820221		Lake_Baikal_phage(100.0%)	1	NA	NA
AVH92250.1|3339718_3340111_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	50.0	1.1e-24
>prophage 221
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3344084	3346319	4820221		Hokovirus(100.0%)	1	NA	NA
AVH92255.1|3344084_3346319_+	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	44.3	5.5e-41
>prophage 222
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3354019	3364059	4820221	transposase	Acinetobacter_phage(50.0%)	11	NA	NA
AVH93589.1|3354019_3354814_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	55.6	2.9e-69
AVH92267.1|3354889_3355921_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	43.8	1.1e-73
AVH92268.1|3355937_3356525_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	58.4	3.2e-65
AVH92269.1|3356527_3357307_-	SIMPL domain-containing protein	NA	NA	NA	NA	NA
AVH92270.1|3357373_3358849_-	anthranilate synthase component I	NA	S4VNU7	Pandoravirus	31.5	1.2e-39
AVH92271.1|3359216_3360161_+|transposase	IS481-like element ISStma12 family transposase	transposase	NA	NA	NA	NA
AVH92272.1|3360170_3361109_-	lipid kinase YegS	NA	A0A1V0SBJ0	Catovirus	28.2	1.2e-08
AVH92273.1|3361412_3361895_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AVH92274.1|3361954_3362629_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AVH92275.1|3362658_3362988_-	J domain-containing protein	NA	NA	NA	NA	NA
AVH92276.1|3363126_3364059_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.2	4.2e-51
>prophage 223
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3377008	3381582	4820221		Salmonella_phage(50.0%)	4	NA	NA
AVH92289.1|3377008_3378064_+	DUF1016 domain-containing protein	NA	A0A0U2BZN7	Salmonella_phage	40.7	1.9e-23
AVH92290.1|3378095_3379235_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92291.1|3379457_3380063_-	disulfide bond formation protein DsbD	NA	NA	NA	NA	NA
AVH92292.1|3380082_3381582_-	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	36.7	5.5e-69
>prophage 224
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3389070	3393711	4820221		Bacillus_virus(50.0%)	3	NA	NA
AVH92299.1|3389070_3390609_+	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	29.7	4.9e-12
AVH92300.1|3390930_3391857_-	DUF808 domain-containing protein	NA	NA	NA	NA	NA
AVH92301.1|3392019_3393711_+	AarF/ABC1/UbiB kinase family protein	NA	A0A0P0CRP3	Ostreococcus_lucimarinus_virus	25.8	1.4e-33
>prophage 225
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3399791	3403822	4820221		Moumouvirus(50.0%)	6	NA	NA
AVH92304.1|3399791_3400286_+	hypothetical protein	NA	M1PB32	Moumouvirus	30.1	2.0e-12
AVH92305.1|3400297_3401506_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AVH92306.1|3401632_3402115_+	hypothetical protein	NA	NA	NA	NA	NA
AVH92307.1|3402268_3402703_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92308.1|3402872_3403163_+	hypothetical protein	NA	NA	NA	NA	NA
AVH92309.1|3403159_3403822_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	32.7	6.9e-24
>prophage 226
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3407740	3409619	4820221		Heterosigma_akashiwo_virus(50.0%)	2	NA	NA
AVH92313.1|3407740_3408592_+	polyamine aminopropyltransferase	NA	A0A1C9C533	Heterosigma_akashiwo_virus	29.0	4.6e-12
AVH92314.1|3408710_3409619_-	aspartyl/asparaginyl beta-hydroxylase domain-containing protein	NA	H8ZJK8	Ostreococcus_tauri_virus	35.5	3.8e-33
>prophage 227
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3413236	3417286	4820221		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AVH92321.1|3413236_3417286_-	hypothetical protein	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	33.1	3.0e-08
>prophage 228
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3441406	3443386	4820221	holin	Vibrio_phage(100.0%)	1	NA	NA
AVH92334.1|3441406_3443386_-|holin	high-affinity choline transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	26.5	9.3e-24
>prophage 229
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3449962	3459275	4820221	transposase	uncultured_Caudovirales_phage(83.33%)	11	NA	NA
AVH92340.1|3449962_3450703_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.0	1.1e-83
AVH92341.1|3450742_3451057_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AVH92342.1|3451082_3451574_+	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	40.3	3.6e-25
AVH92343.1|3451594_3452653_+	arsenical-resistance protein	NA	NA	NA	NA	NA
AVH92344.1|3452686_3453772_+	FAD-dependent oxidoreductase	NA	A0A2H4J2Q2	uncultured_Caudovirales_phage	56.1	5.9e-89
AVH92345.1|3453732_3454266_-	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	44.9	3.0e-30
AVH92346.1|3454377_3455856_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	67.4	2.5e-167
AVH92347.1|3456273_3457263_-	NADPH:quinone reductase	NA	NA	NA	NA	NA
AVH92348.1|3457407_3457650_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AVH93600.1|3457732_3458476_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AVH92349.1|3458699_3459275_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.3	2.8e-29
>prophage 230
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3462604	3470934	4820221		Synechococcus_phage(33.33%)	4	NA	NA
AVH92355.1|3462604_3463714_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	30.6	5.0e-35
AVH92356.1|3463757_3464156_+	VOC family protein	NA	NA	NA	NA	NA
AVH92357.1|3466391_3468257_+	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	36.8	4.9e-51
AVH92358.1|3468282_3470934_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	33.9	6.4e-153
>prophage 231
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3540611	3543587	4820221		Acinetobacter_phage(100.0%)	1	NA	NA
AVH92405.1|3540611_3543587_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	25.1	2.1e-40
>prophage 232
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3558478	3559849	4820221		Streptococcus_phage(100.0%)	1	NA	NA
AVH92415.1|3558478_3559849_-	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	31.5	1.3e-13
>prophage 233
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3576447	3579490	4820221		Bacillus_phage(66.67%)	3	NA	NA
AVH92429.1|3576447_3577851_+	sensor histidine kinase efflux regulator BaeS	NA	W8CYF6	Bacillus_phage	27.3	2.4e-26
AVH92430.1|3577847_3578537_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	32.7	9.7e-29
AVH92431.1|3578668_3579490_+	nucleotidyltransferase domain-containing protein	NA	A0A2D1GQQ2	Pseudomonas_phage	42.5	1.2e-46
>prophage 234
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3587860	3589039	4820221		Ralstonia_phage(100.0%)	1	NA	NA
AVH92439.1|3587860_3589039_-	glutathionylspermidine synthase family protein	NA	B2ZXR7	Ralstonia_phage	43.2	1.5e-77
>prophage 235
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3605630	3606251	4820221		Caulobacter_phage(100.0%)	1	NA	NA
AVH92455.1|3605630_3606251_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	35.7	1.2e-17
>prophage 236
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3610683	3611430	4820221		Staphylococcus_phage(100.0%)	1	NA	NA
AVH92461.1|3610683_3611430_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.7	2.7e-24
>prophage 237
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3617860	3618808	4820221		Staphylococcus_phage(100.0%)	1	NA	NA
AVH93613.1|3617860_3618808_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.7	2.4e-14
>prophage 238
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3624282	3626787	4820221		Bodo_saltans_virus(100.0%)	1	NA	NA
AVH92472.1|3624282_3626787_+	ATP-dependent helicase HrpB	NA	A0A2H4UU36	Bodo_saltans_virus	28.3	4.5e-31
>prophage 239
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3632642	3640842	4820221		Caulobacter_virus(33.33%)	7	NA	NA
AVH92479.1|3632642_3633863_+	RtcB family protein	NA	K4K356	Caulobacter_virus	60.5	1.7e-129
AVH92480.1|3633958_3634864_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AVH92481.1|3634853_3635309_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
AVH92482.1|3635491_3637612_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	70.0	9.1e-09
AVH92483.1|3637695_3638598_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AVH92484.1|3638703_3639918_+	MFS transporter	NA	NA	NA	NA	NA
AVH92485.1|3640032_3640842_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	33.2	1.3e-35
>prophage 240
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3654341	3655073	4820221		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
AVH92495.1|3654341_3655073_-	3-oxoacyl-ACP reductase FabG	NA	A0A0N9R355	Chrysochromulina_ericina_virus	23.8	1.8e-09
>prophage 241
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3661941	3663492	4820221		Catovirus(100.0%)	1	NA	NA
AVH92503.1|3661941_3663492_-	aromatic amino acid lyase	NA	A0A1V0S940	Catovirus	31.4	1.1e-51
>prophage 242
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3683498	3686273	4820221		uncultured_virus(100.0%)	1	NA	NA
AVH92525.1|3683498_3686273_-	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	30.3	1.6e-69
>prophage 243
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3689497	3691690	4820221		Bacillus_phage(100.0%)	1	NA	NA
AVH92531.1|3689497_3691690_-	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	2.7e-117
>prophage 244
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3696753	3697263	4820221		Bradyrhizobium_phage(100.0%)	1	NA	NA
AVH92537.1|3696753_3697263_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	42.3	1.3e-25
>prophage 245
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3708356	3711948	4820221		Klosneuvirus(33.33%)	4	NA	NA
AVH92545.1|3708356_3709322_-	protein CapI	NA	A0A1V0SKV4	Klosneuvirus	30.7	3.7e-26
AVH92546.1|3709367_3710102_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92547.1|3710227_3711151_-	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	37.3	3.1e-14
AVH92548.1|3711150_3711948_-	ParA family protein	NA	A0A0K2FLP4	Brevibacillus_phage	31.3	5.6e-20
>prophage 246
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3719685	3721629	4820221		Staphylococcus_phage(100.0%)	1	NA	NA
AVH92555.1|3719685_3721629_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	38.4	2.4e-85
>prophage 247
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3747700	3749806	4820221		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AVH92574.1|3747700_3749806_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	59.7	8.1e-10
>prophage 248
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3768440	3769721	4820221		Bacillus_phage(100.0%)	1	NA	NA
AVH92581.1|3768440_3769721_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.0	1.9e-14
>prophage 249
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3776818	3777430	4820221		Pneumococcus_phage(100.0%)	1	NA	NA
AVH92586.1|3776818_3777430_-	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	48.7	1.6e-46
>prophage 250
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3784178	3789736	4820221		Brevibacillus_phage(50.0%)	2	NA	NA
AVH92593.1|3784178_3786059_-	exodeoxyribonuclease V subunit alpha	NA	A0A0K2FLP8	Brevibacillus_phage	24.1	1.8e-13
AVH92594.1|3786055_3789736_-	exodeoxyribonuclease V subunit beta	NA	S5MMD7	Bacillus_phage	21.9	2.3e-07
>prophage 251
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3793269	3794058	4820221		Bacillus_phage(100.0%)	1	NA	NA
AVH92596.1|3793269_3794058_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.9	1.5e-09
>prophage 252
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3810723	3815652	4820221	protease	Escherichia_phage(66.67%)	5	NA	NA
AVH92615.1|3810723_3811686_+	TerC family protein	NA	K4F9T9	Cronobacter_phage	31.4	1.2e-32
AVH92616.1|3811792_3812563_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AVH92617.1|3812721_3813828_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
AVH92618.1|3814034_3815117_+	hypothetical protein	NA	A0A0U2S621	Escherichia_phage	25.0	1.4e-21
AVH92619.1|3815064_3815652_-	hypothetical protein	NA	A0A0U2RXY7	Escherichia_phage	40.5	3.4e-38
>prophage 253
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3824169	3829931	4820221		Aurantimonas_phage(50.0%)	3	NA	NA
AVH92626.1|3824169_3825270_+	DNA polymerase III subunit beta	NA	A0A0A8IL17	Aurantimonas_phage	35.0	9.4e-50
AVH92627.1|3826264_3827359_+	DNA replication and repair protein RecF	NA	NA	NA	NA	NA
AVH92628.1|3827471_3829931_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	A0A172JHT4	Bacillus_phage	31.8	6.4e-99
>prophage 254
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3839572	3857742	4820221		Synechococcus_phage(12.5%)	16	NA	NA
AVH92639.1|3839572_3840280_-	2OG-Fe(II) oxygenase	NA	V5UTP7	Synechococcus_phage	47.6	3.3e-16
AVH92640.1|3840389_3841406_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	36.1	3.1e-47
AVH92641.1|3841748_3842951_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AVH92642.1|3843122_3845216_+	TonB-dependent receptor	NA	A0A1B0VCF0	Salmonella_phage	40.7	3.3e-72
AVH92643.1|3845296_3845641_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92644.1|3845789_3846188_+	hypothetical protein	NA	NA	NA	NA	NA
AVH92645.1|3846352_3847273_+	Ku protein	NA	A0A2H4PEI3	Mycobacterium_phage	30.5	1.2e-18
AVH92646.1|3847276_3849763_+	DNA ligase D	NA	A0A068CDF3	Rhizobium_phage	37.4	1.2e-47
AVH92647.1|3849834_3850227_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92648.1|3850434_3851463_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	29.2	4.4e-33
AVH92649.1|3851559_3852198_-	2-dehydro-3-deoxyphosphogluconate aldolase	NA	NA	NA	NA	NA
AVH92650.1|3853142_3854198_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	26.1	1.1e-26
AVH92651.1|3854307_3855201_-	phenylalanine 4-monooxygenase	NA	NA	NA	NA	NA
AVH92652.1|3855326_3855812_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AVH92653.1|3855959_3856703_+	hypothetical protein	NA	NA	NA	NA	NA
AVH92654.1|3856749_3857742_-	Patatin	NA	A0A1X7QFZ0	Faustovirus	25.9	2.8e-05
>prophage 255
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3864945	3874733	4820221		Bacillus_phage(50.0%)	9	NA	NA
AVH92660.1|3864945_3865767_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	22.6	5.2e-05
AVH92661.1|3865918_3867121_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AVH92662.1|3867117_3867450_+	hypothetical protein	NA	NA	NA	NA	NA
AVH92663.1|3867469_3868282_+	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.2	1.3e-16
AVH92664.1|3868387_3869992_+	glucan biosynthesis protein D	NA	NA	NA	NA	NA
AVH92665.1|3870526_3871147_-	thymidine kinase	NA	A0A289ZTU3	Serratia_phage	52.4	1.6e-51
AVH92666.1|3871156_3871888_-	sel1 repeat family protein	NA	NA	NA	NA	NA
AVH92667.1|3871928_3872657_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92668.1|3872756_3874733_+	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	38.1	8.2e-113
>prophage 256
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3882464	3889020	4820221	tRNA	Escherichia_phage(33.33%)	5	NA	NA
AVH92676.1|3882464_3883394_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	67.4	2.9e-92
AVH92677.1|3883430_3884336_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	31.7	4.2e-40
AVH92678.1|3884395_3885175_+	M48 family peptidase	NA	NA	NA	NA	NA
AVH92679.1|3885577_3886444_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AVH93620.1|3886611_3889020_+	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	31.3	4.3e-39
>prophage 257
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3895666	3898344	4820221		Niemeyer_virus(50.0%)	3	NA	NA
AVH92683.1|3895666_3896722_+	DNA topoisomerase IB	NA	A0A0U2TSJ7	Niemeyer_virus	34.6	2.4e-39
AVH92684.1|3896699_3897008_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92685.1|3897225_3898344_+	KR domain-containing protein	NA	F2NZ40	Diadromus_pulchellus_ascovirus	40.9	2.3e-43
>prophage 258
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3907877	3910367	4820221		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AVH92694.1|3907877_3910367_-	helicase	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	33.8	3.7e-09
>prophage 259
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3929950	3932188	4820221		Phormidium_phage(50.0%)	2	NA	NA
AVH92708.1|3929950_3931435_-	ATPase	NA	U5XGM6	Phormidium_phage	37.2	2.6e-63
AVH92709.1|3931558_3932188_+	ParA family protein	NA	A0A142F1W4	Mycobacterium_phage	38.3	4.9e-11
>prophage 260
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3948691	3964276	4820221		Moraxella_phage(100.0%)	1	NA	NA
AVH92723.1|3948691_3964276_+	hypothetical protein	NA	A0A0R6PJK4	Moraxella_phage	33.7	2.1e-38
>prophage 261
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3976124	3977352	4820221		Pseudoplusia_includens_SNPV_IE(50.0%)	2	NA	NA
AVH92732.1|3976124_3976694_+	superoxide dismutase	NA	A0A0B5A1G9	Pseudoplusia_includens_SNPV_IE	37.8	7.5e-11
AVH92733.1|3976725_3977352_+	superoxide dismutase family protein	NA	M1HHL3	Acanthocystis_turfacea_Chlorella_virus	42.1	2.5e-15
>prophage 262
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	3990674	3992291	4820221		uncultured_Caudovirales_phage(100.0%)	3	NA	NA
AVH92749.1|3990674_3991178_-	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	47.4	4.6e-28
AVH92750.1|3991215_3991545_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AVH92751.1|3991562_3992291_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	64.7	1.2e-74
>prophage 263
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4031560	4039127	4820221		EBPR_podovirus(50.0%)	4	NA	NA
AVH93632.1|4031560_4033552_-	peptidoglycan-binding protein	NA	F8TUT3	EBPR_podovirus	45.8	1.5e-05
AVH92780.1|4033664_4034435_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92781.1|4034813_4035452_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AVH92782.1|4035527_4039127_+	histidine kinase	NA	A0A1V0SGX0	Hokovirus	35.2	2.5e-43
>prophage 264
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4056092	4057748	4820221		Bathycoccus_sp._RCC1105_virus(100.0%)	1	NA	NA
AVH92798.1|4056092_4057748_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	E5EQY1	Bathycoccus_sp._RCC1105_virus	30.0	9.8e-35
>prophage 265
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4067846	4068764	4820221		Lactobacillus_phage(100.0%)	1	NA	NA
AVH92810.1|4067846_4068764_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	25.0	3.7e-07
>prophage 266
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4073581	4074622	4820221		Bacillus_virus(100.0%)	1	NA	NA
AVH92814.1|4073581_4074622_+	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	31.0	4.0e-10
>prophage 267
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4080813	4082424	4820221		Pike_perch_iridovirus(100.0%)	1	NA	NA
AVH92819.1|4080813_4082424_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	65.3	1.5e-19
>prophage 268
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4090460	4104512	4820221		Ostreococcus_lucimarinus_virus(16.67%)	13	NA	NA
AVH92827.1|4090460_4092863_+	ribonucleoside-diphosphate reductase subunit alpha	NA	M4QQR4	Ostreococcus_lucimarinus_virus	44.4	3.8e-181
AVH92828.1|4093007_4094027_+	ribonucleoside-diphosphate reductase	NA	R4ZDG8	Choristoneura_biennis_entomopoxvirus	34.6	1.3e-45
AVH92829.1|4094269_4094650_+	hypothetical protein	NA	NA	NA	NA	NA
AVH92830.1|4094689_4095325_-	LysE family translocator	NA	NA	NA	NA	NA
AVH92831.1|4095477_4095879_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AVH92832.1|4095934_4096750_+	NAD-dependent protein deacetylase	NA	S5M4R0	Bacillus_phage	22.9	1.4e-13
AVH92833.1|4096871_4097972_+	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA	NA
AVH92834.1|4097975_4098887_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AVH93634.1|4099001_4099853_+	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	40.2	9.9e-15
AVH92835.1|4100139_4100766_-	bifunctional nicotinamidase/pyrazinamidase	NA	NA	NA	NA	NA
AVH92836.1|4100821_4101493_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92837.1|4101982_4103392_-	nicotinate phosphoribosyltransferase	NA	A0A218M332	Acidovorax_phage	51.3	1.2e-129
AVH92838.1|4103456_4104512_-	NUDIX domain-containing protein	NA	A0A1B0V161	Roseobacter_phage	44.7	7.8e-78
>prophage 269
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4127306	4131601	4820221		Brucella_phage(66.67%)	6	NA	NA
AVH92860.1|4127306_4127594_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	43.2	6.4e-19
AVH92861.1|4127652_4127955_+	putative addiction module antidote protein	NA	A0A141GEX5	Brucella_phage	38.2	7.0e-08
AVH92862.1|4128012_4128294_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92863.1|4128408_4128816_-	hypothetical protein	NA	NA	NA	NA	NA
AVH92864.1|4129408_4130179_+	DUF3011 domain-containing protein	NA	NA	NA	NA	NA
AVH92865.1|4130680_4131601_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.6	2.2e-28
>prophage 270
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4138530	4150997	4820221		Burkholderia_virus(25.0%)	9	NA	NA
AVH92873.1|4138530_4139865_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	28.3	2.6e-30
AVH92874.1|4140088_4140994_+	drug/metabolite exporter YedA	NA	NA	NA	NA	NA
AVH92875.1|4140990_4141887_+	EamA family transporter RarD	NA	NA	NA	NA	NA
AVH92876.1|4142094_4144953_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	26.1	1.1e-49
AVH92877.1|4145344_4146667_-	ABC transporter permease	NA	NA	NA	NA	NA
AVH92878.1|4146680_4147838_-	ABC transporter permease	NA	NA	NA	NA	NA
AVH92879.1|4147852_4148542_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.2	5.7e-37
AVH92880.1|4148644_4149898_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVH92881.1|4150100_4150997_+	ABC transporter ATP-binding protein	NA	A0A2R8FFL6	Cedratvirus	32.0	1.1e-13
>prophage 271
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4155994	4157362	4820221		Mycoplasma_phage(100.0%)	1	NA	NA
AVH92887.1|4155994_4157362_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	33.8	6.9e-26
>prophage 272
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4160697	4162131	4820221	protease	Pithovirus(100.0%)	1	NA	NA
AVH92893.1|4160697_4162131_-|protease	serine endoprotease DegQ	protease	W5SAB9	Pithovirus	30.5	3.2e-10
>prophage 273
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4168843	4169233	4820221		Heterosigma_akashiwo_virus(100.0%)	1	NA	NA
AVH92900.1|4168843_4169233_-	hypothetical protein	NA	A0A1C9C5K8	Heterosigma_akashiwo_virus	35.1	2.1e-12
>prophage 274
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4172254	4174146	4820221		Enterobacteria_phage(50.0%)	3	NA	NA
AVH93639.1|4172254_4172722_-	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	46.1	2.4e-31
AVH92903.1|4172805_4173294_+	hypothetical protein	NA	NA	NA	NA	NA
AVH92904.1|4173393_4174146_+	NADP-dependent 3-hydroxy acid dehydrogenase	NA	A0A0K0KVL6	Prochlorococcus_phage	28.4	4.6e-08
>prophage 275
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4178587	4188867	4820221		Bacillus_phage(33.33%)	7	NA	NA
AVH92909.1|4178587_4179850_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.1	6.8e-36
AVH92910.1|4179846_4180320_+	dUTP diphosphatase	NA	Q2NP83	Xanthomonas_phage	84.8	3.2e-71
AVH92911.1|4180332_4182675_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	30.7	1.7e-48
AVH92912.1|4182771_4183485_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	31.6	4.5e-29
AVH92913.1|4183465_4186126_-	sensor histidine kinase KdpD	NA	B5LWN0	Feldmannia_species_virus	27.5	7.6e-13
AVH92914.1|4186162_4186813_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AVH92915.1|4186809_4188867_-	K(+)-transporting ATPase subunit B	NA	E4ZFI9	Streptococcus_phage	27.1	2.9e-36
>prophage 276
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4196125	4197598	4820221		Gordonia_phage(100.0%)	1	NA	NA
AVH92922.1|4196125_4197598_-	hypothetical protein	NA	A0A2P1JY73	Gordonia_phage	42.7	1.7e-17
>prophage 277
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4214853	4216302	4820221		Moraxella_phage(100.0%)	1	NA	NA
AVH92927.1|4214853_4216302_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	32.0	7.8e-28
>prophage 278
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4219394	4219994	4820221		Vibriophage(100.0%)	1	NA	NA
AVH93642.1|4219394_4219994_+	nicotinamide riboside transporter PnuC	NA	I6W764	Vibriophage	32.7	1.5e-17
>prophage 279
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4235855	4240668	4820221	tRNA	Caulobacter_phage(33.33%)	5	NA	NA
AVH92946.1|4235855_4237595_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	39.8	2.4e-76
AVH92947.1|4237656_4238577_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
AVH92948.1|4238682_4239126_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	50.0	4.9e-26
AVH92949.1|4239260_4239476_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AVH92950.1|4239642_4240668_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	56.3	1.7e-101
>prophage 280
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4298351	4299164	4820221		Mycobacterium_phage(100.0%)	1	NA	NA
AVH93002.1|4298351_4299164_+	alpha/beta hydrolase	NA	A0A1J0GVH7	Mycobacterium_phage	28.6	1.2e-09
>prophage 281
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4308149	4309757	4820221		Streptococcus_phage(100.0%)	1	NA	NA
AVH93012.1|4308149_4309757_-	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	28.0	4.7e-18
>prophage 282
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4317348	4318125	4820221		Halocynthia_phage(100.0%)	1	NA	NA
AVH93017.1|4317348_4318125_+	lytic transglycosylase domain-containing protein	NA	I1VXB7	Halocynthia_phage	40.2	6.9e-15
>prophage 283
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4333131	4334391	4820221		Enterobacteria_phage(100.0%)	1	NA	NA
AVH93031.1|4333131_4334391_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.8	2.7e-24
>prophage 284
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4341012	4343124	4820221		Cafeteria_roenbergensis_virus(100.0%)	1	NA	NA
AVH93039.1|4341012_4343124_-	M13 family peptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	28.4	2.9e-63
>prophage 285
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4359769	4365037	4820221		Pseudomonas_phage(50.0%)	6	NA	NA
AVH93057.1|4359769_4361758_+	hybrid sensor histidine kinase/response regulator	NA	A0A1B0VMK3	Pseudomonas_phage	28.3	9.7e-13
AVH93058.1|4361801_4362092_+	DUF3247 domain-containing protein	NA	NA	NA	NA	NA
AVH93059.1|4362174_4362438_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93060.1|4362594_4363659_+	16S rRNA methyltransferase	NA	NA	NA	NA	NA
AVH93061.1|4363655_4364357_+	16S rRNA pseudouridine(516) synthase	NA	NA	NA	NA	NA
AVH93062.1|4364353_4365037_+	HAD family phosphatase	NA	M1HXP3	Paramecium_bursaria_Chlorella_virus	32.7	3.3e-05
>prophage 286
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4382335	4393156	4820221		Bacillus_phage(33.33%)	8	NA	NA
AVH93080.1|4382335_4383055_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	33.5	7.5e-32
AVH93081.1|4383051_4384521_+	sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	27.3	3.7e-09
AVH93082.1|4384517_4385864_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
AVH93083.1|4385860_4386550_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	34.4	3.6e-31
AVH93084.1|4386900_4388802_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2I2L3T4	Orpheovirus	22.5	6.6e-11
AVH93085.1|4389497_4389845_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93086.1|4389961_4390324_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	38.5	6.3e-11
AVH93087.1|4390516_4393156_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	27.3	2.5e-48
>prophage 287
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4396374	4397787	4820221		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
AVH93089.1|4396374_4397787_-	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.5	6.8e-53
>prophage 288
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4406560	4415259	4820221		Lactococcus_phage(25.0%)	6	NA	NA
AVH93098.1|4406560_4407931_+	CBS domain-containing protein	NA	A0A1W6JHY1	Lactococcus_phage	34.7	6.8e-42
AVH93099.1|4408054_4409227_+	cystathionine gamma-synthase	NA	NA	NA	NA	NA
AVH93100.1|4409308_4410130_+	ABC transporter permease	NA	NA	NA	NA	NA
AVH93101.1|4410119_4411523_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.1	2.4e-10
AVH93102.1|4411519_4412098_+	antibiotic acetyltransferase	NA	A0A2R8FE91	Brazilian_cedratvirus	44.4	3.4e-27
AVH93103.1|4412094_4415259_+	hypothetical protein	NA	A0A0E3FKP5	Synechococcus_phage	31.9	4.4e-07
>prophage 289
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4420221	4420971	4820221		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
AVH93108.1|4420221_4420971_+	dolichyl-phosphate mannose synthase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	29.4	1.6e-21
>prophage 290
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4425442	4432836	4820221		Enterobacteria_phage(42.86%)	7	NA	NA
AVH93113.1|4425442_4426498_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	45.9	2.0e-78
AVH93114.1|4426512_4427400_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	59.9	2.6e-98
AVH93115.1|4427396_4427954_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	51.1	9.2e-46
AVH93116.1|4427950_4428844_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	38.6	2.1e-28
AVH93117.1|4428896_4430300_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	29.4	3.3e-47
AVH93118.1|4430311_4431658_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	26.6	1.0e-29
AVH93119.1|4431879_4432836_+	SDR family NAD-dependent epimerase/dehydratase	NA	A0A2K9KZK0	Tupanvirus	48.1	2.6e-88
>prophage 291
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4440073	4443061	4820221		Tupanvirus(50.0%)	4	NA	NA
AVH93127.1|4440073_4440661_+	alpha-ketoglutarate-dependent dioxygenase AlkB	NA	A0A2K9L0M4	Tupanvirus	33.7	3.0e-23
AVH93128.1|4440665_4441307_-	ABC transporter	NA	NA	NA	NA	NA
AVH93129.1|4441303_4442230_-	MCE family protein	NA	NA	NA	NA	NA
AVH93130.1|4442233_4443061_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	31.4	5.3e-13
>prophage 292
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4451596	4456484	4820221	tRNA	Catovirus(50.0%)	3	NA	NA
AVH93140.1|4451596_4454425_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	33.8	3.0e-124
AVH93141.1|4454497_4454923_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
AVH93142.1|4455005_4456484_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.1	5.3e-48
>prophage 293
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4459511	4468226	4820221		Gordonia_phage(33.33%)	4	NA	NA
AVH93146.1|4459511_4460489_+	site-specific tyrosine recombinase XerD	NA	A0A166YH27	Gordonia_phage	29.4	5.1e-15
AVH93147.1|4460589_4461372_+	DsbC family protein	NA	NA	NA	NA	NA
AVH93148.1|4461430_4463530_-	chitinase	NA	B6D5U1	Agrotis_ipsilon_multiple_nucleopolyhedrovirus	34.8	5.4e-54
AVH93149.1|4464305_4468226_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	55.0	1.5e-113
>prophage 294
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4476004	4477897	4820221	protease	Bacillus_phage(100.0%)	1	NA	NA
AVH93151.1|4476004_4477897_+|protease	protease	protease	A0A217EQY2	Bacillus_phage	31.5	6.6e-19
>prophage 295
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4486535	4492380	4820221		Enterobacteria_phage(50.0%)	4	NA	NA
AVH93162.1|4486535_4488737_+	type II secretion system protein GspD	NA	G4WZN6	Enterobacteria_phage	25.2	3.8e-10
AVH93163.1|4489409_4490261_+	glycosyltransferase	NA	NA	NA	NA	NA
AVH93164.1|4490257_4491097_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AVH93165.1|4491198_4492380_+	nicotinate phosphoribosyltransferase	NA	A0A2L0UZQ6	Agrobacterium_phage	31.6	1.7e-49
>prophage 296
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4512499	4526246	4820221		Staphylococcus_phage(42.86%)	14	NA	NA
AVH93178.1|4512499_4513816_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	37.4	1.7e-61
AVH93179.1|4513908_4515573_-	energy-dependent translational throttle protein EttA	NA	A0A1B0RXA0	Streptococcus_phage	30.2	3.4e-43
AVH93180.1|4515825_4516299_+	hypothetical protein	NA	NA	NA	NA	NA
AVH93181.1|4516486_4517740_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	54.1	6.0e-101
AVH93182.1|4517864_4518338_+	hypothetical protein	NA	NA	NA	NA	NA
AVH93183.1|4518368_4518800_+	hypothetical protein	NA	NA	NA	NA	NA
AVH93184.1|4518792_4519242_+	hypothetical protein	NA	NA	NA	NA	NA
AVH93185.1|4519391_4519913_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
AVH93650.1|4520191_4521277_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	33.9	1.1e-42
AVH93186.1|4521821_4522706_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93187.1|4522857_4523478_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93651.1|4523885_4524488_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	39.3	3.8e-29
AVH93188.1|4524484_4525585_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	35.7	2.2e-54
AVH93189.1|4525778_4526246_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	40.8	1.4e-23
>prophage 297
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4529330	4531352	4820221		Pseudomonas_phage(100.0%)	1	NA	NA
AVH93194.1|4529330_4531352_+	acyltransferase	NA	W6MVL2	Pseudomonas_phage	32.3	4.1e-43
>prophage 298
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4535672	4536491	4820221		Streptococcus_phage(100.0%)	1	NA	NA
AVH93199.1|4535672_4536491_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	39.4	9.1e-42
>prophage 299
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4556584	4557541	4820221		Xanthomonas_phage(100.0%)	1	NA	NA
AVH93218.1|4556584_4557541_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	44.8	6.5e-31
>prophage 300
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4560654	4565316	4820221		Acinetobacter_phage(50.0%)	5	NA	NA
AVH93220.1|4560654_4561611_+	Nudix family hydrolase	NA	A0A172Q0K9	Acinetobacter_phage	37.1	2.7e-05
AVH93221.1|4561662_4562247_-	DUF4124 domain-containing protein	NA	NA	NA	NA	NA
AVH93222.1|4562287_4563115_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AVH93223.1|4563318_4564245_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVH93653.1|4564269_4565316_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	38.4	3.3e-20
>prophage 301
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4569545	4570991	4820221		Pandoravirus(100.0%)	1	NA	NA
AVH93229.1|4569545_4570991_-	adenosylhomocysteinase	NA	S4W1G4	Pandoravirus	31.6	4.0e-48
>prophage 302
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4577386	4578598	4820221		Staphylococcus_phage(100.0%)	1	NA	NA
AVH93233.1|4577386_4578598_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	57.4	3.6e-119
>prophage 303
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4595870	4601692	4820221		Planktothrix_phage(33.33%)	7	NA	NA
AVH93246.1|4595870_4596518_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.1	8.2e-30
AVH93247.1|4596593_4597238_+	arylesterase	NA	NA	NA	NA	NA
AVH93248.1|4597292_4598039_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	33.6	2.6e-27
AVH93249.1|4598195_4599467_+	sensor histidine kinase	NA	NA	NA	NA	NA
AVH93656.1|4599599_4600301_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93250.1|4600513_4600909_+	diacylglycerol kinase	NA	NA	NA	NA	NA
AVH93251.1|4600942_4601692_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	46.0	2.6e-43
>prophage 304
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4606624	4609726	4820221		Geobacillus_virus(33.33%)	4	NA	NA
AVH93257.1|4606624_4607419_+	thymidylate synthase	NA	A6M9A2	Geobacillus_virus	68.9	5.4e-108
AVH93657.1|4607424_4607916_+	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	38.5	1.6e-25
AVH93258.1|4608041_4608704_-	DUF1287 domain-containing protein	NA	NA	NA	NA	NA
AVH93259.1|4608700_4609726_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	S4TT53	Salmonella_phage	24.0	2.4e-07
>prophage 305
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4615853	4616792	4820221		Tupanvirus(100.0%)	1	NA	NA
AVH93264.1|4615853_4616792_-	acetoin utilization protein	NA	A0A2K9L2T7	Tupanvirus	31.8	1.0e-36
>prophage 306
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4624379	4626128	4820221	tRNA	Escherichia_phage(100.0%)	1	NA	NA
AVH93274.1|4624379_4626128_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	57.7	2.2e-186
>prophage 307
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4630586	4632179	4820221		Lactococcus_phage(100.0%)	1	NA	NA
AVH93280.1|4630586_4632179_-	alkyl hydroperoxide reductase subunit F	NA	A0A0D3MT87	Lactococcus_phage	29.1	2.4e-22
>prophage 308
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4636432	4640266	4820221		Mycobacterium_phage(50.0%)	4	NA	NA
AVH93284.1|4636432_4637851_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	35.7	4.4e-44
AVH93285.1|4637989_4638787_-	N-formylglutamate amidohydrolase	NA	NA	NA	NA	NA
AVH93286.1|4638779_4639334_-	NUDIX hydrolase	NA	NA	NA	NA	NA
AVH93287.1|4639330_4640266_-	exodeoxyribonuclease IX	NA	A0A2H4IAS6	Erwinia_phage	27.1	9.8e-16
>prophage 309
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4650908	4652651	4820221		Bacillus_phage(100.0%)	1	NA	NA
AVH93298.1|4650908_4652651_+	peptidase S8	NA	A0A127AWU5	Bacillus_phage	37.1	7.9e-19
>prophage 310
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4659389	4660472	4820221		Pseudomonas_phage(100.0%)	1	NA	NA
AVH93305.1|4659389_4660472_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	38.2	5.6e-07
>prophage 311
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4665232	4666192	4820221		Tupanvirus(100.0%)	1	NA	NA
AVH93662.1|4665232_4666192_+	ribose-phosphate diphosphokinase	NA	A0A2K9L2G2	Tupanvirus	34.9	6.5e-39
>prophage 312
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4669371	4676100	4820221		Acinetobacter_phage(50.0%)	4	NA	NA
AVH93313.1|4669371_4672110_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	36.2	2.3e-150
AVH93663.1|4672280_4673300_+	peptidase	NA	NA	NA	NA	NA
AVH93314.1|4673405_4674422_+	isoaspartyl peptidase/L-asparaginase	NA	NA	NA	NA	NA
AVH93315.1|4674909_4676100_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	27.6	5.2e-14
>prophage 313
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4680447	4693624	4820221		Cafeteria_roenbergensis_virus(25.0%)	6	NA	NA
AVH93322.1|4680447_4684602_+	DNA-directed RNA polymerase subunit beta	NA	E3T4Z4	Cafeteria_roenbergensis_virus	22.4	1.1e-23
AVH93323.1|4684691_4688915_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	26.9	2.9e-67
AVH93324.1|4689237_4689612_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
AVH93325.1|4689624_4690098_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
AVH93326.1|4690239_4692381_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	27.4	1.0e-52
AVH93327.1|4692433_4693624_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	27.6	5.2e-14
>prophage 314
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4719262	4724130	4820221		Indivirus(50.0%)	4	NA	NA
AVH93362.1|4719262_4719754_+	peptidylprolyl isomerase	NA	A0A1V0SCU1	Indivirus	48.9	6.1e-25
AVH93363.1|4719872_4720859_+	malate dehydrogenase	NA	NA	NA	NA	NA
AVH93364.1|4720981_4721596_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AVH93365.1|4722249_4724130_+	propionate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	31.1	4.8e-62
>prophage 315
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4735117	4736326	4820221		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
AVH93377.1|4735117_4736326_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	26.2	5.9e-21
>prophage 316
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4745066	4746533	4820221		Mollivirus(100.0%)	1	NA	NA
AVH93385.1|4745066_4746533_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	39.4	1.4e-85
>prophage 317
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4753108	4756033	4820221		Acinetobacter_phage(100.0%)	1	NA	NA
AVH93392.1|4753108_4756033_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	24.9	3.4e-38
>prophage 318
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4760317	4764650	4820221		Bacillus_phage(66.67%)	4	NA	NA
AVH93395.1|4760317_4761649_-	phosphate regulon sensor histidine kinase PhoR	NA	W8CYF6	Bacillus_phage	33.2	1.9e-28
AVH93396.1|4761752_4762442_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	34.7	2.6e-34
AVH93397.1|4762558_4764217_-	M48 family peptidase	NA	NA	NA	NA	NA
AVH93398.1|4764359_4764650_+	glutaredoxin 3	NA	A0A2L0UZG6	Agrobacterium_phage	43.2	2.0e-07
>prophage 319
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4772665	4793594	4820221	integrase	uncultured_marine_virus(12.5%)	23	4772644:4772660	4778567:4778583
4772644:4772660	attL	AAGCTGGCGACGGTCAG	NA	NA	NA	NA
AVH93407.1|4772665_4773910_-|integrase	site-specific integrase	integrase	A0A0F7L7C7	uncultured_marine_virus	27.9	4.8e-10
AVH93408.1|4773976_4774351_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93409.1|4774397_4774619_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93410.1|4775472_4776093_-	antirestriction protein ArdA	NA	U5P3Z5	Mycobacterium_phage	34.5	5.7e-20
AVH93411.1|4776156_4776417_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93412.1|4776413_4776596_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93413.1|4776592_4777033_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93414.1|4777032_4777356_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93415.1|4777408_4778008_-	hypothetical protein	NA	Q8HAP4	Burkholderia_phage	41.1	6.5e-13
AVH93416.1|4779548_4779878_+	hypothetical protein	NA	NA	NA	NA	NA
4778567:4778583	attR	CTGACCGTCGCCAGCTT	NA	NA	NA	NA
AVH93417.1|4780093_4780426_+	hypothetical protein	NA	NA	NA	NA	NA
AVH93418.1|4780529_4780916_+	response regulator	NA	NA	NA	NA	NA
AVH93419.1|4780937_4781390_-	hypothetical protein	NA	Q7Y5G6	Xanthomonas_virus	32.9	1.5e-09
AVH93420.1|4781386_4781695_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93421.1|4781704_4782202_-	hypothetical protein	NA	A0A2H4JFP9	uncultured_Caudovirales_phage	59.2	5.2e-40
AVH93422.1|4782198_4782390_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93423.1|4782398_4784072_-	DNA maturase B	NA	A0A2R2ZGE7	Ralstonia_phage	56.5	3.6e-178
AVH93424.1|4784071_4784317_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93425.1|4784313_4784583_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93426.1|4784609_4785059_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93427.1|4785094_4787899_-	hypothetical protein	NA	A0A142EZL1	Stenotrophomonas_phage	40.1	7.2e-38
AVH93428.1|4787924_4790462_-	DUF1983 domain-containing protein	NA	NA	NA	NA	NA
AVH93666.1|4790501_4793594_-	hypothetical protein	NA	L7TQZ1	Rhizobium_phage	23.3	3.2e-47
>prophage 320
CP014014	Stenotrophomonas maltophilia strain FDAARGOS_92 chromosome, complete genome	4820221	4796751	4816384	4820221	capsid,transposase,tail	Rhizobium_phage(33.33%)	26	NA	NA
AVH93432.1|4796751_4798884_-	hypothetical protein	NA	L7TLW2	Rhizobium_phage	31.5	3.6e-66
AVH93433.1|4798883_4799474_-	hypothetical protein	NA	A0A2R2ZGD2	Ralstonia_phage	41.4	7.3e-25
AVH93434.1|4799573_4800527_-|capsid	capsid protein	capsid	L7TJ83	Rhizobium_phage	42.7	2.4e-62
AVH93435.1|4800553_4801339_-|capsid	capsid assembly protein	capsid	A0A1B1IVZ8	uncultured_Mediterranean_phage	30.6	1.1e-20
AVH93436.1|4801498_4803055_-|tail	phage tail protein	tail	L7TJ79	Rhizobium_phage	37.6	1.1e-85
AVH93437.1|4803220_4803400_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93438.1|4803464_4804001_-	adenylate kinase	NA	A0A2H4J8A1	uncultured_Caudovirales_phage	46.1	1.4e-30
AVH93439.1|4804069_4804378_+	hypothetical protein	NA	NA	NA	NA	NA
AVH93440.1|4804403_4804610_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93441.1|4804597_4805431_-	DNA polymerase I	NA	M1HMA9	Pelagibacter_phage	36.0	2.0e-36
AVH93442.1|4805573_4805885_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93443.1|4805881_4806130_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93444.1|4806280_4806646_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93445.1|4806642_4806981_-	hypothetical protein	NA	A0A2H4P845	Pseudomonas_phage	53.2	9.6e-22
AVH93667.1|4806962_4808696_-	DNA polymerase	NA	A0A076YNV1	Mesorhizobium_phage	48.7	1.7e-151
AVH93446.1|4808849_4809500_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93447.1|4809510_4809759_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93448.1|4809924_4811556_-	DNA primase	NA	L7TLT7	Rhizobium_phage	56.6	3.7e-151
AVH93449.1|4811542_4811722_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93450.1|4811718_4812120_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93451.1|4812116_4812428_-	hypothetical protein	NA	A0A218M4E4	Pasteurella_phage	42.0	5.2e-14
AVH93452.1|4812479_4812959_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A2I7QZP6	Vibrio_phage	31.1	1.4e-05
AVH93453.1|4812900_4813566_-	hypothetical protein	NA	A0A076YJ33	Mesorhizobium_phage	40.9	1.5e-26
AVH93454.1|4813723_4814008_-	hypothetical protein	NA	NA	NA	NA	NA
AVH93455.1|4814188_4815415_-	hypothetical protein	NA	L7TQW5	Rhizobium_phage	45.8	1.9e-96
AVH93456.1|4815469_4816384_-|transposase	IS110 family transposase ISStma6	transposase	Q75QL1	Wolbachia_phage	34.9	7.1e-27
