The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	2718638	29289	82395	2718638	protease,bacteriocin,holin,tRNA	Streptococcus_phage(28.57%)	54	NA	NA
AUW97617.1|29289_30279_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AUW97618.1|30573_30969_+	regulatory protein Spx	NA	NA	NA	NA	NA
AUW97619.1|31339_32059_+	adaptor protein MecA	NA	NA	NA	NA	NA
AUW97620.1|32179_33166_+	competence protein CoiA	NA	NA	NA	NA	NA
AUW97621.1|33213_35022_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
AUW97622.1|35481_36288_-	hypothetical protein	NA	NA	NA	NA	NA
AUW97623.1|36310_36676_-	globin	NA	NA	NA	NA	NA
AUW97624.1|36779_37373_-	adenylate cyclase	NA	NA	NA	NA	NA
AUW97625.1|37558_37906_+	hypothetical protein	NA	NA	NA	NA	NA
AUW97626.1|37922_38558_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
AUW97627.1|38574_39384_+	NAD(+) kinase	NA	NA	NA	NA	NA
AUW97628.1|39380_40235_+	RNA pseudouridine synthase	NA	NA	NA	NA	NA
AUW97629.1|40255_41641_+	magnesium transporter	NA	NA	NA	NA	NA
AUW97630.1|41650_43495_+	sodium:proton antiporter	NA	NA	NA	NA	NA
AUW97631.1|43772_44543_+	enoyl-ACP reductase	NA	NA	NA	NA	NA
AUW97632.1|44737_45823_-	AI-2E family transporter	NA	NA	NA	NA	NA
AUW97633.1|46164_47733_+	sodium:alanine symporter	NA	NA	NA	NA	NA
AUW97634.1|47877_48636_+	acetylesterase	NA	NA	NA	NA	NA
AUW97635.1|48829_49339_+	hypothetical protein	NA	NA	NA	NA	NA
AUW97636.1|49451_50660_-	MFS transporter	NA	NA	NA	NA	NA
AUW97637.1|50619_51795_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
AUW97638.1|52227_53712_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
AUW97639.1|53692_53953_+	hypothetical protein	NA	NA	NA	NA	NA
AUW97640.1|53952_55515_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
AUW97641.1|55816_56620_+	hypothetical protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
AUW97642.1|56838_59163_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.8	1.6e-11
AUW97643.1|59179_60538_+	Ktr system potassium uptake protein D	NA	NA	NA	NA	NA
AUW97644.1|60676_62188_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
AUW97645.1|62674_63244_-	competence protein ComK	NA	NA	NA	NA	NA
AUW97646.1|63453_63672_+	IDEAL domain protein	NA	NA	NA	NA	NA
AUW97647.1|63752_64739_-	lipoate--protein ligase	NA	NA	NA	NA	NA
AUW97648.1|64937_65114_+	DUF2187 domain-containing protein	NA	NA	NA	NA	NA
AUW97649.1|65128_65731_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AUW97650.1|66000_66108_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AUW97651.1|66646_66748_+	hypothetical protein	NA	NA	NA	NA	NA
AUX00161.1|66757_67030_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
AUW97652.1|67073_69038_+	hypothetical protein	NA	NA	NA	NA	NA
AUW97653.1|69040_69361_+	hypothetical protein	NA	NA	NA	NA	NA
AUW97654.1|69357_69999_+|bacteriocin	bacteriocin ABC transporter ATP-binding protein	bacteriocin	G9BWD6	Planktothrix_phage	33.0	1.7e-19
AUW97655.1|70086_70377_-	hypothetical protein	NA	NA	NA	NA	NA
AUW97656.1|70517_70655_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
AUW97657.1|70743_71100_-	hypothetical protein	NA	NA	NA	NA	NA
AUW97658.1|72593_72725_-	hypothetical protein	NA	NA	NA	NA	NA
AUW97659.1|72788_73079_-	hypothetical protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
AUW97660.1|73168_73720_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUW97661.1|73771_74710_-	1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA	NA	NA	NA	NA
AUW97662.1|74860_74965_+	hypothetical protein	NA	NA	NA	NA	NA
AUW97663.1|75041_76253_+	isochorismate synthase	NA	NA	NA	NA	NA
AUW97664.1|76239_77913_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	NA	NA	NA	NA	NA
AUW97665.1|77899_78703_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
AUW97666.1|78695_79517_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
AUW97667.1|79754_80084_-	staphostatin B	NA	NA	NA	NA	NA
AUW97668.1|80121_81303_-	staphopain B	NA	NA	NA	NA	NA
AUW97669.1|81384_82395_-|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	32.3	6.2e-16
>prophage 2
CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	2718638	101424	109879	2718638		Synechococcus_phage(33.33%)	9	NA	NA
AUX00163.1|101424_101889_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.8	1.5e-20
AUW97686.1|101875_103000_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AUW97687.1|103003_103708_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AUW97688.1|103707_103971_+	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
AUW97689.1|103972_104644_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AUW97690.1|104636_106826_+	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	39.7	1.3e-140
AUW97691.1|106804_108289_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
AUW97692.1|108281_109310_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
AUW97693.1|109312_109879_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 3
CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	2718638	343876	400170	2718638	portal,integrase,terminase,holin,protease,head,tRNA,tail	Staphylococcus_phage(50.0%)	63	364033:364070	398764:398801
AUW97915.1|343876_345421_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AUW97916.1|345421_345787_+	hypothetical protein	NA	NA	NA	NA	NA
AUW97917.1|345813_346305_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA	NA
AUW97918.1|346607_349226_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
AUW97919.1|349238_351248_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.7	2.8e-60
AUW97920.1|351253_351796_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
AUW97921.1|352270_353089_+	aquaporin	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
AUW97922.1|353217_354714_+	glycerol kinase	NA	NA	NA	NA	NA
AUW97923.1|354871_356545_+	aerobic glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AUW97924.1|356694_357609_+	lysophospholipase	NA	NA	NA	NA	NA
AUW97925.1|357626_358562_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AUW97926.1|358576_358810_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AUW97927.1|359031_359508_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
AUW97928.1|359619_360858_+	GTPase HflX	NA	NA	NA	NA	NA
AUW97929.1|360876_362115_+	hypothetical protein	NA	NA	NA	NA	NA
AUW97930.1|362357_362726_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUW97931.1|362744_364085_+	glutamine synthetase	NA	NA	NA	NA	NA
364033:364070	attL	ACAGAACTCAAGTATCTGAATGGGAAAGAGATCAGTAC	NA	NA	NA	NA
AUW97932.1|364224_365352_-|integrase	site-specific integrase	integrase	A0A0C5AN64	Paenibacillus_phage	31.4	6.2e-33
AUW97933.1|365404_366100_-	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.3	3.6e-07
AUW97934.1|366111_366495_-	hypothetical protein	NA	NA	NA	NA	NA
AUW97935.1|366641_367034_-	transcriptional regulator	NA	A0A2I6PE55	Staphylococcus_phage	53.6	1.6e-28
AUW97936.1|367201_367420_+	DUF739 domain-containing protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
AUW97937.1|367446_367722_+	hypothetical protein	NA	NA	NA	NA	NA
AUW97938.1|368145_368352_-	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	75.0	3.3e-25
AUW97939.1|368412_369096_+	phage repressor protein	NA	A9CR56	Staphylococcus_phage	85.2	2.0e-106
AUW97940.1|369194_369356_+	DUF1270 domain-containing protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
AUW97941.1|369442_369760_+	hypothetical protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
AUW97942.1|369749_370016_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.0e-18
AUW97943.1|370020_370557_+	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	82.5	1.7e-76
AUW97944.1|370557_371337_+	chromosomal replication initiator DnaA	NA	A0A1W6JPW0	Staphylococcus_phage	88.0	2.3e-127
AUX00175.1|371417_371912_+	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	94.0	6.4e-83
AUW97945.1|372826_373117_+	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	7.2e-18
AUW97946.1|373131_373290_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	6.7e-18
AUW97947.1|373295_373607_+	hypothetical protein	NA	NA	NA	NA	NA
AUW97948.1|373599_374130_+	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	39.1	2.3e-22
AUW97949.1|374364_374829_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	42.4	6.1e-19
AUW97950.1|374829_375063_+	hypothetical protein	NA	NA	NA	NA	NA
AUW97951.1|375105_375594_+	RNA polymerase subunit sigma-70	NA	R9TMH4	Paenibacillus_phage	28.3	8.7e-08
AUW97952.1|375746_376175_+	HNH endonuclease	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
AUW97953.1|376161_377436_+|terminase	terminase	terminase	Q4ZE37	Staphylococcus_virus	76.2	3.2e-195
AUW97954.1|377448_378897_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.4	3.7e-195
AUX00176.1|379426_380416_+|head	head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	68.9	3.8e-50
AUW97955.1|380615_380744_+	hypothetical protein	NA	NA	NA	NA	NA
AUW97956.1|380710_381289_+	hypothetical protein	NA	Q4ZE34	Staphylococcus_virus	50.8	1.9e-09
AUW97957.1|382295_382769_+	hypothetical protein	NA	A0A2H4J9T3	uncultured_Caudovirales_phage	31.6	9.7e-12
AUW97958.1|382784_383111_+|head,tail	phage head-tail adapter protein	head,tail	Q4ZE31	Staphylococcus_virus	56.4	2.1e-26
AUW97959.1|383110_383416_+	hypothetical protein	NA	Q4ZE30	Staphylococcus_virus	40.6	6.4e-17
AUW97960.1|383416_383767_+	hypothetical protein	NA	H9A0N6	Staphylococcus_phage	60.0	9.3e-36
AUW97961.1|383776_384172_+	hypothetical protein	NA	H9A0N7	Staphylococcus_phage	42.3	1.9e-21
AUW97962.1|384183_384783_+|tail	phage major tail protein, TP901-1 family	tail	H9A0N8	Staphylococcus_phage	47.5	7.4e-17
AUW97963.1|384844_385189_+|tail	phage tail protein	tail	A0A1J0MFH0	Staphylococcus_phage	58.9	2.9e-34
AUX00177.1|385239_385593_+	hypothetical protein	NA	Q4ZE25	Staphylococcus_virus	72.3	1.7e-37
AUW97964.1|385604_388775_+	hypothetical protein	NA	Q4ZE24	Staphylococcus_virus	54.5	1.6e-94
AUW97965.1|388789_389725_+|tail	phage tail protein	tail	A0A1J0MF79	Staphylococcus_phage	55.9	2.1e-98
AUW97966.1|389733_391419_+	hypothetical protein	NA	Q4ZE19	Staphylococcus_virus	46.5	1.4e-108
AUW97967.1|391436_392450_+	SGNH/GDSL hydrolase family protein	NA	A0A1J0MFI8	Staphylococcus_phage	52.6	6.5e-98
AUW97968.1|393877_394267_+|holin	holin	holin	A0A1S6L1J2	Staphylococcus_phage	38.2	6.9e-16
AUW97969.1|394331_395237_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQL2	Staphylococcus_phage	50.4	1.0e-65
AUW97970.1|395706_395904_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	3.7e-10
AUX00178.1|396124_397060_+|protease	CAAX protease	protease	A0A059NT88	Lactococcus_phage	44.0	5.3e-70
AUW97971.1|397507_397924_+	hypothetical protein	NA	NA	NA	NA	NA
AUW97972.1|398350_398575_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	75.4	1.6e-20
AUW97973.1|398829_400170_+|head	phage head morphogenesis protein	head	A0A1J0MF61	Staphylococcus_phage	58.7	5.3e-140
398764:398801	attR	ACAGAACTCAAGTATCTGAATGGGAAAGAGATCAGTAC	NA	NA	NA	NA
>prophage 4
CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	2718638	672514	680844	2718638	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
AUW98215.1|672514_673300_-	zinc ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	1.0e-18
AUW98216.1|673425_674316_-	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
AUW98217.1|674325_675672_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.1e-55
AUW98218.1|675785_676886_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AUW98219.1|676888_677566_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AUW98220.1|677696_678803_-	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AUW98221.1|679026_680844_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
>prophage 5
CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	2718638	748673	757716	2718638	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AUW98287.1|748673_749192_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
AUW98288.1|749213_751487_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	1.1e-63
AUW98289.1|751689_753969_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	36.6	1.4e-31
AUW98290.1|754243_754504_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AUW98291.1|754522_755662_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AUW98292.1|755684_756710_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AUW98293.1|756711_757716_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 6
CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	2718638	948007	998961	2718638	portal,integrase,terminase,holin,head,tail,capsid	Staphylococcus_phage(84.51%)	75	949150:949166	992361:992377
AUW98483.1|948007_948736_+	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	36.8	1.8e-17
949150:949166	attL	TATGGAGACGGCGGGAT	NA	NA	NA	NA
AUW98484.1|949327_949528_-	hypothetical protein	NA	A0A2H4PQS9	Staphylococcus_phage	100.0	3.5e-32
AUW98485.1|949541_949748_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	98.5	9.9e-30
AUW98486.1|949722_949878_-	hypothetical protein	NA	NA	NA	NA	NA
AUW98487.1|950276_951722_-	autolysin	NA	Q08JW9	Staphylococcus_phage	97.7	5.7e-289
AUW98488.1|951702_952140_-|holin	phage holin	holin	A7YGY0	Staphylococcus_virus	97.2	2.2e-71
AUW98489.1|952195_954790_-|tail	phage tail protein	tail	Q4ZC48	Staphylococcus_virus	57.0	1.1e-271
AUW98490.1|954802_956677_-	CHAP domain-containing protein	NA	Q4ZBP7	Staphylococcus_phage	97.8	0.0e+00
AUW98491.1|956813_957113_-	hypothetical protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
AUX00194.1|957153_957327_-	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
AUW98492.1|957330_957708_-	hypothetical protein	NA	Q8LTH7	Staphylococcus_phage	100.0	7.3e-55
AUW98493.1|957707_959531_-	hypothetical protein	NA	B1H3M3	Staphylococcus_phage	99.8	0.0e+00
AUW98494.1|959530_961429_-	hypothetical protein	NA	A0A0H3U448	Staphylococcus_phage	95.1	0.0e+00
AUW98495.1|961441_963328_-	peptidase	NA	A0A059T677	Staphylococcus_phage	97.8	0.0e+00
AUW98496.1|963338_964280_-|tail	phage tail protein	tail	A0A059T7K5	Staphylococcus_phage	98.1	4.5e-178
AUW98497.1|964294_967180_-|terminase	terminase	terminase	M9NRJ5	Staphylococcus_phage	92.2	2.3e-310
AUW98498.1|967183_967468_-	hypothetical protein	NA	A0A059T626	Staphylococcus_phage	96.8	9.8e-44
AUW98499.1|967512_968025_-	hypothetical protein	NA	A0A059T5B1	Staphylococcus_phage	99.4	1.2e-92
AUW98500.1|968091_968649_-|tail	phage tail protein	tail	A0A059T675	Staphylococcus_phage	100.0	4.1e-102
AUW98501.1|968649_969075_-	hypothetical protein	NA	Q4ZBQ9	Staphylococcus_phage	98.6	2.3e-73
AUW98502.1|969087_969501_-	hypothetical protein	NA	A0A0N9BAY5	Staphylococcus_phage	98.5	2.0e-74
AUW98503.1|969487_969823_-|head,tail	phage head-tail adapter protein	head,tail	M9NUJ3	Staphylococcus_phage	98.2	1.3e-58
AUW98504.1|969834_970185_-|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	99.1	3.2e-60
AUW98505.1|970345_971260_-|capsid	major capsid protein	capsid	A0A059T7K3	Staphylococcus_phage	99.3	1.3e-169
AUW98506.1|971276_971861_-	hypothetical protein	NA	M9NRJ1	Staphylococcus_phage	99.5	9.9e-75
AUW98507.1|971964_972198_-	hypothetical protein	NA	M9NUJ2	Staphylococcus_phage	100.0	2.5e-37
AUW98508.1|972201_973152_-|head	phage head morphogenesis protein	head	M9NST7	Staphylococcus_phage	100.0	2.3e-177
AUW98509.1|973120_974545_-|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	100.0	4.8e-272
AUW98510.1|974541_975765_-|terminase	terminase	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
AUW98511.1|975757_976252_-|terminase	terminase	terminase	A0A059T7P8	Staphylococcus_phage	99.4	1.1e-74
AUW98512.1|976582_977005_-	transcriptional regulator	NA	A0A0F6N3E5	Staphylococcus_phage	99.3	2.7e-74
AUW98513.1|977028_977175_-	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	97.9	3.7e-15
AUW98514.1|977175_977349_-	transcriptional regulator	NA	A0A0H3U4U1	Staphylococcus_phage	96.5	1.9e-21
AUW98515.1|977345_977741_-	hypothetical protein	NA	M9QX07	Staphylococcus_phage	94.7	1.3e-62
AUW98516.1|977724_977961_-	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	94.9	2.0e-34
AUW98517.1|977953_978241_-	DUF1381 domain-containing protein	NA	Q4ZAB6	Staphylococcus_virus	96.8	4.4e-44
AUW98518.1|978277_978790_-	dUTP pyrophosphatase	NA	Q4ZDG4	Staphylococcus_virus	98.8	2.8e-89
AUW98519.1|978782_978977_-	hypothetical protein	NA	M1SVE4	Staphylococcus_phage	93.4	1.3e-23
AUW98520.1|978939_979194_-	hypothetical protein	NA	A7TWH5	Staphylococcus_phage	92.9	6.1e-37
AUW98521.1|979186_979576_-	acetyltransferase	NA	I1W604	Staphylococcus_phage	100.0	1.4e-69
AUW98522.1|979572_979944_-	hypothetical protein	NA	I1W606	Staphylococcus_phage	100.0	1.6e-65
AUW98523.1|979940_980135_-	hypothetical protein	NA	A0A0E3XCV8	Staphylococcus_phage	100.0	2.5e-27
AUW98524.1|980131_980536_-	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	98.5	6.0e-71
AUW98525.1|980538_980745_-	hypothetical protein	NA	A0A2I6PDB7	Staphylococcus_phage	100.0	1.3e-34
AUW98526.1|980759_981008_-	hypothetical protein	NA	A0A2I6PDB4	Staphylococcus_phage	100.0	2.1e-42
AUW98527.1|981007_981262_-	hypothetical protein	NA	A0A2K9VBW1	Staphylococcus_phage	100.0	1.6e-42
AUW98528.1|981261_981879_-	hypothetical protein	NA	A0A0H3U4U9	Staphylococcus_phage	99.5	1.2e-83
AUW98529.1|981879_982065_-	hypothetical protein	NA	A0A1X9H0T9	Staphylococcus_phage	95.1	6.0e-26
AUW98530.1|982069_982474_-	hypothetical protein	NA	A7TWN5	Staphylococcus_phage	100.0	7.1e-72
AUW98531.1|982484_982706_-	hypothetical protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
AUW98532.1|982718_982877_-	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	96.2	5.8e-22
AUW98533.1|982870_983644_-	DNA replication protein DnaC	NA	A0A2I6PDA0	Staphylococcus_phage	99.6	2.7e-144
AUW98534.1|983653_984457_-	replication protein	NA	A0A2H4JCF5	uncultured_Caudovirales_phage	100.0	1.1e-121
AUW98535.1|984428_985121_-	hypothetical protein	NA	Q4ZAZ0	Staphylococcus_virus	98.3	2.0e-130
AUW98536.1|985133_985685_-	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
AUW98537.1|985713_986502_-	chromosomal replication initiator DnaA	NA	Q4ZBM5	Staphylococcus_phage	100.0	2.6e-142
AUW98538.1|986494_986716_-	hypothetical protein	NA	B2ZYV2	Staphylococcus_phage	100.0	3.2e-34
AUW98539.1|986725_986986_-	hypothetical protein	NA	A0A068A219	Staphylococcus_phage	100.0	8.9e-44
AUW98540.1|986990_987293_-	hypothetical protein	NA	A0A0F6N3N3	Staphylococcus_phage	99.0	1.2e-47
AUW98541.1|987385_987547_-	DUF1270 domain-containing protein	NA	C7F7L3	Staphylococcus_phage	100.0	1.9e-20
AUW98542.1|987560_987770_-	hypothetical protein	NA	A0A2H4PQR1	Staphylococcus_phage	100.0	9.7e-33
AUW98543.1|987794_988496_-	phage repressor protein	NA	W5R8M8	Staphylococcus_phage	98.7	5.1e-126
AUX00195.1|988503_988797_+	hypothetical protein	NA	Q4ZB03	Staphylococcus_virus	97.6	1.5e-39
AUW98544.1|988966_989212_-	transcriptional regulator	NA	I6T7P7	Staphylococcus_virus	77.8	1.3e-28
AUW98545.1|989378_989693_+	transcriptional regulator	NA	A0A1W6JP51	Staphylococcus_phage	72.1	6.4e-36
AUW98546.1|989708_990170_+	toxin	NA	A0A2H4IYT4	uncultured_Caudovirales_phage	58.9	4.9e-45
AUW98547.1|990190_990682_+	hypothetical protein	NA	M9NSS1	Staphylococcus_phage	98.2	3.7e-83
AUW98548.1|990685_991189_+	hypothetical protein	NA	A0A059T7N4	Staphylococcus_phage	98.8	1.5e-47
AUW98549.1|991250_992300_+|integrase	site-specific integrase	integrase	W5R968	Staphylococcus_phage	99.1	7.0e-196
AUW98550.1|992811_993276_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
992361:992377	attR	TATGGAGACGGCGGGAT	NA	NA	NA	NA
AUW98551.1|993297_995670_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.0	1.3e-93
AUW98552.1|995703_996444_-	carboxylesterase	NA	NA	NA	NA	NA
AUW98553.1|996559_996793_-	protein-export membrane protein SecG	NA	NA	NA	NA	NA
AUW98554.1|996859_997318_-	hypothetical protein	NA	NA	NA	NA	NA
AUW98555.1|997656_998961_-	enolase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
>prophage 7
CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	2718638	1047183	1061044	2718638		uncultured_Caudovirales_phage(55.56%)	18	NA	NA
AUW98601.1|1047183_1048140_-	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AUX00197.1|1048126_1049098_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
AUW98602.1|1049136_1049292_-	hypothetical protein	NA	NA	NA	NA	NA
AUW98603.1|1049512_1049617_-	hypothetical protein	NA	NA	NA	NA	NA
AUW98604.1|1049749_1050721_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AUW98605.1|1050838_1052944_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AUW98606.1|1052906_1053305_-	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AUW98607.1|1053454_1053721_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AUW98608.1|1054105_1054972_+	EamA family transporter	NA	NA	NA	NA	NA
AUW98609.1|1054991_1055492_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AUW98610.1|1055521_1055767_+	hypothetical protein	NA	NA	NA	NA	NA
AUW98611.1|1055832_1057338_+	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AUW98612.1|1057415_1057517_-	hypothetical protein	NA	NA	NA	NA	NA
AUW98613.1|1057607_1058525_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
AUW98614.1|1058958_1059051_+	hypothetical protein	NA	NA	NA	NA	NA
AUW98615.1|1059148_1059691_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AUW98616.1|1059838_1059964_-	hypothetical protein	NA	NA	NA	NA	NA
AUW98617.1|1059985_1061044_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.1e-20
>prophage 8
CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	2718638	1073016	1080835	2718638		Pandoravirus(16.67%)	10	NA	NA
AUW98627.1|1073016_1074168_-	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	36.1	1.2e-23
AUW98628.1|1074151_1074745_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AUW98629.1|1075095_1075764_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AUW98630.1|1075765_1076185_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AUW98631.1|1076188_1076902_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AUW98632.1|1077000_1077585_+	hypothetical protein	NA	NA	NA	NA	NA
AUW98633.1|1077864_1078305_+	hypothetical protein	NA	NA	NA	NA	NA
AUW98634.1|1078645_1079119_+	DoxX family protein	NA	NA	NA	NA	NA
AUW98635.1|1079093_1079780_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUW98636.1|1079779_1080835_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.5	1.6e-14
>prophage 9
CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	2718638	2256382	2270204	2718638	integrase,terminase,coat	Staphylococcus_phage(72.22%)	20	2258342:2258361	2271125:2271144
AUW99741.1|2256382_2256667_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
AUW99742.1|2256742_2258359_+	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
2258342:2258361	attL	ATGCCAGGAATGATGTAAAA	NA	NA	NA	NA
AUW99743.1|2258427_2259600_-|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	97.7	6.6e-219
AUW99744.1|2259613_2260288_-	transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
AUW99745.1|2260460_2260679_+	transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
AUW99746.1|2260683_2261001_+	excisionase	NA	A0A1W6JQE0	Staphylococcus_phage	97.1	1.6e-50
AUW99747.1|2260997_2261144_+	pathogenicity island protein	NA	NA	NA	NA	NA
AUW99748.1|2261136_2261346_+	pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
AUW99749.1|2261348_2261669_+	pathogenicity island protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.2	6.5e-20
AUW99750.1|2261735_2262605_+	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	96.2	1.5e-164
AUW99751.1|2262618_2264319_+	hypothetical protein	NA	Q4ZE73	Staphylococcus_phage	95.2	1.3e-308
AUW99752.1|2264648_2265029_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	96.0	3.2e-66
AUW99753.1|2265025_2265667_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	92.0	1.4e-109
AUW99754.1|2266183_2266525_+	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.1e-57
AUW99755.1|2266555_2267209_+	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	98.2	2.7e-113
AUW99756.1|2267261_2267789_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	97.7	2.9e-89
AUX00258.1|2267920_2268133_+	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	98.6	1.1e-31
AUW99757.1|2268129_2268699_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	1.7e-100
AUW99758.1|2268853_2269558_-	toxin	NA	NA	NA	NA	NA
AUW99759.1|2269967_2270204_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	48.1	8.7e-14
2271125:2271144	attR	ATGCCAGGAATGATGTAAAA	NA	NA	NA	NA
>prophage 10
CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	2718638	2418871	2453374	2718638	protease	Staphylococcus_phage(90.62%)	41	NA	NA
AUW99898.1|2418871_2419624_-	hypothetical protein	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.2	4.4e-51
AUW99899.1|2419650_2420421_-	exotoxin	NA	A0EX09	Staphylococcus_phage	33.5	4.3e-25
AUW99900.1|2420420_2421047_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	3.9e-93
AUW99901.1|2421120_2422116_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	4.2e-73
AUW99902.1|2422196_2422847_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	99.1	3.0e-56
AUX00262.1|2423149_2423605_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.2e-78
AUW99903.1|2423763_2425242_+	2-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	100.0	1.5e-289
AUW99904.1|2425246_2426248_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.2	9.7e-187
AUW99905.1|2426244_2426502_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	98.8	3.6e-45
AUW99906.1|2426567_2427041_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
AUX00263.1|2427045_2427792_+	dipeptidyl aminopeptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.2	2.2e-143
AUW99907.1|2428169_2429762_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AUW99908.1|2430133_2431327_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AUW99909.1|2431451_2432360_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
AUW99910.1|2432571_2433405_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
AUW99911.1|2433416_2433596_-	hypothetical protein	NA	NA	NA	NA	NA
AUW99912.1|2433787_2434141_-	camphor resistance protein CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
AUW99913.1|2434137_2434503_-	camphor resistance protein CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
AUW99914.1|2434758_2435061_-	hypothetical protein	NA	NA	NA	NA	NA
AUW99915.1|2435320_2436034_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AUW99916.1|2436473_2437109_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AUW99917.1|2437404_2437848_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
AUW99918.1|2437834_2438278_-	competence protein ComK	NA	NA	NA	NA	NA
AUW99919.1|2438390_2438861_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
AUW99920.1|2439059_2439284_+	hypothetical protein	NA	NA	NA	NA	NA
AUW99921.1|2439559_2440414_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AUW99922.1|2440708_2441104_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	1.8e-72
AUW99923.1|2441121_2442414_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AUW99924.1|2442413_2442728_-	transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
AUW99925.1|2443250_2444753_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
AUX00264.1|2445245_2446277_+	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	2.0e-195
AUW99926.1|2446283_2446916_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	100.0	3.4e-113
AUW99927.1|2446926_2448108_+	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
AUW99928.1|2448120_2448585_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
AUW99929.1|2448706_2449708_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	100.0	3.1e-185
AUX00265.1|2449616_2449808_+	hypothetical protein	NA	NA	NA	NA	NA
AUW99930.1|2449819_2449939_+	hypothetical protein	NA	NA	NA	NA	NA
AUW99931.1|2449941_2450769_+	lysophospholipase	NA	NA	NA	NA	NA
AUW99932.1|2451339_2451741_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUW99933.1|2451860_2452424_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AUW99934.1|2452420_2453374_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
