The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP016608	Xylella fastidiosa strain Salento-1 chromosome, complete genome	2508097	1132112	1151508	2508097	capsid,coat	Stenotrophomonas_phage(60.0%)	28	NA	NA
AVI20632.1|1132112_1132241_+|capsid	capsid protein	capsid	NA	NA	NA	NA
AVI20633.1|1133687_1134017_+|coat	phage coat protein	coat	NA	NA	NA	NA
AVI20634.1|1134016_1135351_+	Zonular occludens toxin	NA	Q4LAU4	Stenotrophomonas_phage	49.3	7.2e-113
AVI20635.1|1135489_1135738_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20636.1|1135799_1136147_-	hypothetical protein	NA	Q38057	Xanthomonas_phage	44.1	4.0e-07
AVI20637.1|1136733_1137030_+	hypothetical protein	NA	NA	NA	NA	NA
AVI20638.1|1137647_1137830_+	hypothetical protein	NA	NA	NA	NA	NA
AVI20639.1|1137977_1138202_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20640.1|1138355_1139531_+	Replication initiation factor	NA	S0F3F7	Stenotrophomonas_phage	45.5	2.5e-77
AVI20641.1|1139576_1139891_+	hypothetical protein	NA	NA	NA	NA	NA
AVI20642.1|1140014_1140266_+	hypothetical protein	NA	NA	NA	NA	NA
AVI20643.1|1140285_1140414_+|capsid	capsid protein	capsid	NA	NA	NA	NA
AVI20644.1|1140547_1141837_+	hypothetical protein	NA	Q94MX3	Xanthomonas_phage	48.3	9.1e-20
AVI20645.1|1141849_1142179_+|coat	phage coat protein	coat	NA	NA	NA	NA
AVI20646.1|1142178_1143513_+	Zonular occludens toxin	NA	Q4LAU4	Stenotrophomonas_phage	49.3	7.2e-113
AVI20647.1|1143652_1143931_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20648.1|1143993_1144341_-	hypothetical protein	NA	Q38057	Xanthomonas_phage	32.4	3.4e-06
AVI20649.1|1144490_1144904_-	hypothetical protein	NA	S0F314	Stenotrophomonas_phage	38.5	3.7e-15
AVI21718.1|1145081_1145381_+	hypothetical protein	NA	NA	NA	NA	NA
AVI20650.1|1145643_1145826_+	hypothetical protein	NA	NA	NA	NA	NA
AVI20651.1|1145973_1146198_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20652.1|1146351_1147527_+	Replication initiation factor	NA	S0F3F7	Stenotrophomonas_phage	45.5	2.5e-77
AVI20653.1|1147572_1147887_+	hypothetical protein	NA	NA	NA	NA	NA
AVI20654.1|1148009_1148261_+	hypothetical protein	NA	NA	NA	NA	NA
AVI20655.1|1148280_1148409_+|capsid	capsid protein	capsid	NA	NA	NA	NA
AVI20656.1|1148542_1149832_+	hypothetical protein	NA	Q94MX3	Xanthomonas_phage	48.3	9.1e-20
AVI20657.1|1149844_1150174_+|coat	phage coat protein	coat	NA	NA	NA	NA
AVI20658.1|1150173_1151508_+	Zonular occludens toxin	NA	Q4LAU4	Stenotrophomonas_phage	49.3	5.5e-113
>prophage 2
CP016608	Xylella fastidiosa strain Salento-1 chromosome, complete genome	2508097	1156546	1165077	2508097	coat	Xanthomonas_phage(85.71%)	11	NA	NA
AVI20666.1|1156546_1157884_+	hypothetical protein	NA	Q94MX3	Xanthomonas_phage	48.3	9.4e-20
AVI20667.1|1157896_1158226_+|coat	phage coat protein	coat	NA	NA	NA	NA
AVI21720.1|1159714_1159954_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20668.1|1160026_1160374_-	hypothetical protein	NA	Q38057	Xanthomonas_phage	44.1	5.2e-07
AVI20669.1|1161514_1161784_+	hypothetical protein	NA	NA	NA	NA	NA
AVI20670.1|1161798_1162158_-	hypothetical protein	NA	A0A1D6ZIU8	Xanthomonas_phage	68.3	2.3e-29
AVI20671.1|1162346_1162760_-	hypothetical protein	NA	A0A1W6DXR3	Xanthomonas_phage	78.6	9.2e-59
AVI20672.1|1162759_1163101_-	DUF2523 domain-containing protein	NA	A0A1D6ZIU0	Xanthomonas_phage	46.8	1.8e-20
AVI21721.1|1163104_1164601_-	hypothetical protein	NA	A0A1D6ZIU5	Xanthomonas_phage	49.1	1.5e-58
AVI21722.1|1164637_1164862_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20673.1|1164870_1165077_-	hypothetical protein	NA	S0F2M5	Stenotrophomonas_phage	65.0	2.8e-16
>prophage 3
CP016608	Xylella fastidiosa strain Salento-1 chromosome, complete genome	2508097	1186354	1207125	2508097		Xylella_phage(100.0%)	19	NA	NA
AVI20682.1|1186354_1187857_-	hypothetical protein	NA	C8CLJ8	Xylella_phage	86.7	6.7e-224
AVI20683.1|1187853_1188636_-	hypothetical protein	NA	C8CLJ7	Xylella_phage	88.5	7.4e-126
AVI20684.1|1188671_1189070_+	hypothetical protein	NA	NA	NA	NA	NA
AVI21728.1|1189066_1190371_-	hypothetical protein	NA	C8CLJ3	Xylella_phage	83.4	2.6e-184
AVI20685.1|1192065_1192773_-	hypothetical protein	NA	C8CLJ1	Xylella_phage	70.6	1.2e-77
AVI20686.1|1192803_1193049_-	hypothetical protein	NA	C8CLJ0	Xylella_phage	97.2	1.6e-34
AVI20687.1|1193018_1194947_-	hypothetical protein	NA	C8CLI9	Xylella_phage	95.2	0.0e+00
AVI20688.1|1194943_1195351_-	hypothetical protein	NA	C8CLI8	Xylella_phage	98.5	1.3e-68
AVI20689.1|1195371_1196598_-	hypothetical protein	NA	C8CLI7	Xylella_phage	92.9	1.6e-215
AVI20690.1|1196646_1197501_-	hypothetical protein	NA	C8CLI6	Xylella_phage	78.5	8.4e-107
AVI20691.1|1197502_1199575_-	hypothetical protein	NA	C8CLI5	Xylella_phage	97.5	0.0e+00
AVI20692.1|1199577_1200990_-	DNA packaging protein	NA	C8CLI4	Xylella_phage	98.9	2.1e-280
AVI20693.1|1200901_1201228_-	hypothetical protein	NA	C8CLI3	Xylella_phage	96.3	1.7e-52
AVI20694.1|1201227_1201542_-	hypothetical protein	NA	C8CLI2	Xylella_phage	95.2	2.0e-50
AVI21729.1|1201541_1202084_-	hypothetical protein	NA	C8CLI0	Xylella_phage	87.8	2.4e-75
AVI20695.1|1202080_1202539_-	endolysin	NA	C8CLH9	Xylella_phage	95.4	6.6e-82
AVI21730.1|1202558_1202783_-	hypothetical protein	NA	C8CLH8	Xylella_phage	97.3	5.5e-34
AVI20696.1|1203897_1206426_-	DNA primase	NA	C8CLH6	Xylella_phage	75.8	0.0e+00
AVI20697.1|1206561_1207125_-	hypothetical protein	NA	C8CLH5	Xylella_phage	69.7	2.3e-68
>prophage 4
CP016608	Xylella fastidiosa strain Salento-1 chromosome, complete genome	2508097	1210934	1222311	2508097	integrase	Xylella_phage(100.0%)	14	1208641:1208654	1224928:1224941
1208641:1208654	attL	ACAACAGCATTCTG	NA	NA	NA	NA
AVI20706.1|1210934_1211450_+	hypothetical protein	NA	C8CLG9	Xylella_phage	36.6	2.9e-09
AVI20707.1|1211837_1212305_+	hypothetical protein	NA	NA	NA	NA	NA
AVI20708.1|1212301_1212703_+	hypothetical protein	NA	C8CLG7	Xylella_phage	97.7	3.6e-68
AVI20709.1|1212699_1212894_+	hypothetical protein	NA	C8CLG6	Xylella_phage	89.1	1.4e-25
AVI20710.1|1212925_1213120_+	hypothetical protein	NA	C8CLG5	Xylella_phage	71.4	4.5e-16
AVI20711.1|1213183_1213612_+	hypothetical protein	NA	C8CLG4	Xylella_phage	62.9	4.9e-31
AVI20712.1|1213608_1214886_+	hypothetical protein	NA	C8CLG3	Xylella_phage	87.7	3.1e-214
AVI20713.1|1214885_1215452_+	hypothetical protein	NA	C8CLG2	Xylella_phage	98.4	5.8e-104
AVI21731.1|1215918_1216674_+	antirepressor	NA	C8CLG1	Xylella_phage	91.7	4.8e-130
AVI20714.1|1216707_1218825_+	DNA polymerase	NA	C8CLG0	Xylella_phage	92.6	0.0e+00
AVI20715.1|1218821_1219100_+	hypothetical protein	NA	C8CLF9	Xylella_phage	96.7	1.1e-44
AVI20716.1|1219101_1219548_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20717.1|1219632_1221051_+	hypothetical protein	NA	C8CLF7	Xylella_phage	98.1	1.5e-273
AVI20718.1|1221291_1222311_+|integrase	integrase	integrase	C8CLF4	Xylella_phage	97.1	5.2e-188
1224928:1224941	attR	CAGAATGCTGTTGT	NA	NA	NA	NA
>prophage 5
CP016608	Xylella fastidiosa strain Salento-1 chromosome, complete genome	2508097	1289998	1300169	2508097	tail	Salmonella_phage(25.0%)	14	NA	NA
AVI20768.1|1289998_1290331_-	transcriptional regulator	NA	A0A0P0IRJ4	Acinetobacter_phage	40.7	1.6e-16
AVI20769.1|1290605_1292597_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20770.1|1292843_1293419_+	hypothetical protein	NA	I6R0L8	Salmonella_phage	40.7	1.3e-18
AVI20771.1|1293418_1293646_+	hypothetical protein	NA	C8CLJ6	Xylella_phage	66.1	2.0e-15
AVI20772.1|1293646_1294810_-|tail	phage tail protein	tail	H9C1B7	Pectobacterium_phage	38.5	9.0e-19
AVI20773.1|1294813_1295374_-	hypothetical protein	NA	A0A0M5M1K4	Salmonella_phage	26.8	8.5e-07
AVI20774.1|1295370_1296516_-	hypothetical protein	NA	D0UIH5	Aggregatibacter_phage	49.0	5.3e-96
AVI20775.1|1296618_1296915_+	addiction module antitoxin RelB	NA	A0A141GEX6	Brucella_phage	54.7	9.0e-24
AVI21742.1|1296917_1297211_+	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	37.9	6.2e-09
AVI20776.1|1297266_1297620_-	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	51.0	4.1e-23
AVI20777.1|1297616_1298258_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	37.3	2.5e-31
AVI20778.1|1298254_1299085_-	hypothetical protein	NA	D0UIH8	Aggregatibacter_phage	51.8	6.8e-77
AVI20779.1|1299081_1299399_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20780.1|1299398_1300169_-	hypothetical protein	NA	Q7Y5T0	Haemophilus_phage	34.1	1.4e-28
>prophage 6
CP016608	Xylella fastidiosa strain Salento-1 chromosome, complete genome	2508097	1316244	1325972	2508097		Xylella_phage(33.33%)	14	NA	NA
AVI20795.1|1316244_1316742_-	peptidase	NA	A0A2I7RLY1	Vibrio_phage	53.1	2.3e-27
AVI20796.1|1316945_1317284_-	hypothetical protein	NA	K4NZP3	Burkholderia_phage	54.9	1.0e-07
AVI20797.1|1317270_1317537_-	hypothetical protein	NA	K4NX81	Burkholderia_phage	40.7	8.1e-08
AVI21744.1|1318549_1318960_-	hypothetical protein	NA	A0A088F6Y8	Sulfitobacter_phage	42.1	3.2e-11
AVI20798.1|1318965_1320426_-	replicative DNA helicase	NA	O80281	Escherichia_phage	39.7	5.7e-71
AVI20799.1|1320828_1321290_-	hypothetical protein	NA	A0A0F7LAQ7	uncultured_marine_virus	36.9	8.2e-08
AVI20800.1|1321289_1321661_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20801.1|1321662_1321941_-	hypothetical protein	NA	NA	NA	NA	NA
AVI21745.1|1321919_1323032_-	hypothetical protein	NA	C8CLG1	Xylella_phage	59.5	3.3e-111
AVI20802.1|1323064_1323850_-	hypothetical protein	NA	C8CLH5	Xylella_phage	55.9	2.1e-27
AVI20803.1|1324433_1324682_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20804.1|1324678_1324867_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20805.1|1324920_1325139_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20806.1|1325240_1325972_+	hypothetical protein	NA	C8CLH1	Xylella_phage	63.2	1.0e-23
>prophage 7
CP016608	Xylella fastidiosa strain Salento-1 chromosome, complete genome	2508097	1329370	1337688	2508097	integrase	Xylella_phage(45.45%)	12	1329910:1329922	1338290:1338302
AVI20812.1|1329370_1329760_+	hypothetical protein	NA	C8CLG8	Xylella_phage	78.6	1.7e-17
AVI20813.1|1329759_1330176_+	hypothetical protein	NA	C8CLG7	Xylella_phage	73.9	3.0e-49
1329910:1329922	attL	GCCGGTACGTTGT	NA	NA	NA	NA
AVI20814.1|1330172_1330364_+	hypothetical protein	NA	NA	NA	NA	NA
AVI20815.1|1330705_1330897_+	hypothetical protein	NA	C8CLG6	Xylella_phage	78.1	2.8e-18
AVI20816.1|1330917_1331262_+	hypothetical protein	NA	U5P4J6	Shigella_phage	45.5	3.0e-15
AVI20817.1|1331301_1332123_+	hypothetical protein	NA	K7ZMK3	Xanthomonas_citri_phage	43.3	5.2e-53
AVI20818.1|1332138_1333056_+	phage recombination protein Bet	NA	U6C6J0	Ralstonia_phage	48.7	4.6e-58
AVI20819.1|1333052_1334687_+	hypothetical protein	NA	U6C712	Ralstonia_phage	38.2	6.8e-97
AVI21747.1|1335058_1335889_+	hypothetical protein	NA	Q3LZN7	Bacteriophage	46.7	1.8e-21
AVI20820.1|1335955_1336402_+	single-stranded DNA-binding protein	NA	L7TJL2	Pseudomonas_virus	52.9	1.1e-33
AVI20821.1|1336420_1336669_+	hypothetical protein	NA	C8CLF5	Xylella_phage	81.7	8.0e-34
AVI20822.1|1336668_1337688_+|integrase	integrase	integrase	C8CLF4	Xylella_phage	87.9	5.4e-169
1338290:1338302	attR	ACAACGTACCGGC	NA	NA	NA	NA
>prophage 8
CP016608	Xylella fastidiosa strain Salento-1 chromosome, complete genome	2508097	1383576	1392722	2508097	tail	Salmonella_phage(27.27%)	14	NA	NA
AVI20854.1|1383576_1383930_-	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	47.0	9.1e-23
AVI20855.1|1384844_1385861_+	peptidase M4	NA	NA	NA	NA	NA
AVI21753.1|1385868_1386222_+	hypothetical protein	NA	NA	NA	NA	NA
AVI20856.1|1386245_1386518_+	transcriptional regulator	NA	NA	NA	NA	NA
AVI20857.1|1386564_1387056_+	hypothetical protein	NA	I6R0L8	Salmonella_phage	32.6	3.7e-14
AVI20858.1|1387055_1387283_+	hypothetical protein	NA	C8CLJ6	Xylella_phage	66.1	2.0e-15
AVI20859.1|1387283_1388447_-|tail	phage tail protein	tail	H9C1B7	Pectobacterium_phage	38.5	9.0e-19
AVI20860.1|1388450_1389011_-	hypothetical protein	NA	A0A0M5M1K4	Salmonella_phage	26.8	8.5e-07
AVI20861.1|1389007_1390153_-	hypothetical protein	NA	D0UIH5	Aggregatibacter_phage	49.0	5.3e-96
AVI20862.1|1390255_1390552_+	addiction module antitoxin RelB	NA	A0A141GEX6	Brucella_phage	54.7	9.0e-24
AVI21754.1|1390554_1390848_+	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	37.9	6.2e-09
AVI20863.1|1390903_1391257_-	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	51.0	4.1e-23
AVI20864.1|1391253_1391895_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	37.3	2.5e-31
AVI20865.1|1391891_1392722_-	hypothetical protein	NA	D0UIH8	Aggregatibacter_phage	51.8	6.8e-77
>prophage 9
CP016608	Xylella fastidiosa strain Salento-1 chromosome, complete genome	2508097	1397229	1419515	2508097	integrase,head	Haemophilus_phage(23.81%)	31	1414286:1414299	1418696:1418709
AVI20869.1|1397229_1397667_-	hypothetical protein	NA	Q7Y5T4	Haemophilus_phage	63.1	3.6e-45
AVI20870.1|1397676_1399173_-	hypothetical protein	NA	Q7Y5T5	Haemophilus_phage	47.8	1.9e-122
AVI20871.1|1399173_1399677_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20872.1|1399630_1399999_-	hypothetical protein	NA	Q776V7	Haemophilus_phage	42.9	2.8e-19
AVI20873.1|1399985_1400465_-	hypothetical protein	NA	M4SN98	Psychrobacter_phage	28.0	8.6e-08
AVI21755.1|1400461_1400830_-	hypothetical protein	NA	Q7Y5T9	Haemophilus_phage	38.1	1.7e-11
AVI20874.1|1400829_1401183_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20875.1|1401248_1402232_-	hypothetical protein	NA	A0A2R3UA82	Siphoviridae_environmental_samples	39.0	1.1e-49
AVI20876.1|1402241_1402724_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20877.1|1402751_1403942_-	hypothetical protein	NA	H9C194	Pectobacterium_phage	41.7	2.1e-39
AVI20878.1|1403941_1404787_-|head	phage head morphogenesis protein	head	Q7Y5U5	Haemophilus_phage	32.3	1.6e-28
AVI20879.1|1404859_1405198_+	hypothetical protein	NA	NA	NA	NA	NA
AVI20880.1|1405194_1405476_+	transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	45.2	5.2e-13
AVI21756.1|1405524_1406685_-	hypothetical protein	NA	H9C106	Vibrio_phage	36.8	1.7e-54
AVI20881.1|1406909_1408460_-	hypothetical protein	NA	H9C0C7	Vibrio_phage	44.7	5.4e-112
AVI20882.1|1408410_1408809_-	hypothetical protein	NA	NA	NA	NA	NA
AVI21757.1|1408900_1409131_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20883.1|1409114_1409576_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20884.1|1409565_1409895_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20885.1|1409887_1410385_-	peptidase	NA	A0A2I7RLY1	Vibrio_phage	53.1	2.3e-27
AVI20886.1|1410589_1410928_-	hypothetical protein	NA	K4NZP3	Burkholderia_phage	54.9	1.0e-07
AVI20887.1|1410914_1411181_-	hypothetical protein	NA	K4NX81	Burkholderia_phage	40.7	8.1e-08
AVI20888.1|1411368_1412067_-	hypothetical protein	NA	C8CLH7	Xylella_phage	81.7	4.3e-101
AVI21758.1|1412195_1412606_-	hypothetical protein	NA	A0A088F6Y8	Sulfitobacter_phage	42.1	3.2e-11
AVI20889.1|1412653_1413343_-	hypothetical protein	NA	NA	NA	NA	NA
AVI20890.1|1413323_1414316_-	hypothetical protein	NA	A0A0P0I481	Acinetobacter_phage	44.3	2.9e-18
1414286:1414299	attL	AATCGCCAATGTGG	NA	NA	NA	NA
AVI21759.1|1414312_1414651_-	hypothetical protein	NA	C8CLG1	Xylella_phage	84.8	1.4e-49
AVI21760.1|1414794_1415010_+	hypothetical protein	NA	C8CLF5	Xylella_phage	80.3	1.3e-27
AVI20891.1|1415009_1416029_+|integrase	integrase	integrase	C8CLF4	Xylella_phage	90.3	1.2e-173
AVI21761.1|1416173_1417583_-	class II fumarate hydratase	NA	NA	NA	NA	NA
AVI20892.1|1418147_1419515_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.1	1.3e-109
1418696:1418709	attR	AATCGCCAATGTGG	NA	NA	NA	NA
