The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP016490	Halomonas sp. GFAJ-1 chromosome, complete genome	3650492	61643	72585	3650492	tRNA	Tupanvirus(16.67%)	8	NA	NA
AVI61247.1|61643_64253_-|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	37.5	4.4e-74
AVI61248.1|64392_64872_-	recombinase RecX	NA	NA	NA	NA	NA
AVI61249.1|64913_65978_-	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	61.6	1.3e-112
AVI61250.1|66067_66601_-	damage-inducible protein CinA	NA	B5TK85	Pseudomonas_phage	60.1	6.3e-36
AVI61251.1|66815_69395_+	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	23.7	1.1e-29
AVI61252.1|69551_69875_+	ferredoxin	NA	NA	NA	NA	NA
AVI61253.1|70361_71651_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	58.8	2.0e-131
AVI61254.1|71721_72585_-	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	42.6	2.6e-47
>prophage 2
CP016490	Halomonas sp. GFAJ-1 chromosome, complete genome	3650492	332044	385737	3650492	transposase	Shigella_phage(17.65%)	42	NA	NA
AVI61472.1|332044_332323_+|transposase	transposase	transposase	U5P4I9	Shigella_phage	62.5	6.9e-18
AVI61473.1|332379_333198_+|transposase	transposase	transposase	U5P429	Shigella_phage	64.7	2.8e-99
AVI61474.1|333768_334044_+	hypothetical protein	NA	NA	NA	NA	NA
AVI61475.1|335578_336094_+	hypothetical protein	NA	NA	NA	NA	NA
AVI61476.1|336115_336574_+	Opioid growth factor receptor (OGFr) conserved domain containing protein	NA	NA	NA	NA	NA
AVI61477.1|336959_337265_+	monooxygenase	NA	NA	NA	NA	NA
AVI61478.1|337408_337639_-	hypothetical protein	NA	NA	NA	NA	NA
AVI61479.1|338177_339575_+	hypothetical protein	NA	A0A1B0V854	Salmonella_phage	51.8	2.0e-36
AVI61480.1|339614_339851_+	hypothetical protein	NA	NA	NA	NA	NA
AVI61481.1|339850_342943_+	diguanylate cyclase	NA	NA	NA	NA	NA
AVI61482.1|343264_344329_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	29.7	2.7e-14
AVI61483.1|344475_346173_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	40.5	5.9e-11
AVI61484.1|346406_348071_+	hypothetical protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	25.2	1.7e-10
AVI61485.1|348370_350584_+	hypothetical protein	NA	NA	NA	NA	NA
AVI61486.1|350883_351252_-|transposase	transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	44.7	2.8e-22
AVI61487.1|351338_351557_+	hypothetical protein	NA	NA	NA	NA	NA
AVI61488.1|351635_352388_+	hypothetical protein	NA	NA	NA	NA	NA
AVI61489.1|352527_354525_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	47.6	4.2e-08
AVI61490.1|354661_355963_-	hypothetical protein	NA	NA	NA	NA	NA
AVI61491.1|356010_356598_-	hypothetical protein	NA	NA	NA	NA	NA
AVI61492.1|356856_357567_-	hypothetical protein	NA	NA	NA	NA	NA
AVI61493.1|357958_359686_+	histidine kinase	NA	A0A1V0SL97	Klosneuvirus	25.8	4.5e-14
AVI61494.1|359682_361593_-	hypothetical protein	NA	A0A1V0SGX0	Hokovirus	35.2	4.3e-50
AVI61495.1|361576_362848_-	hypothetical protein	NA	NA	NA	NA	NA
AVI61496.1|362874_364941_-	hypothetical protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	27.4	2.0e-29
AVI61497.1|364942_366790_-	hypothetical protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	33.6	1.1e-47
AVI61498.1|366779_367310_-	oxidoreductase	NA	NA	NA	NA	NA
AVI61499.1|367657_370225_-	hypothetical protein	NA	A0A1V0SGX0	Hokovirus	29.3	4.3e-53
AVI61500.1|370271_371393_-	histidine kinase	NA	NA	NA	NA	NA
AVI61501.1|371456_373520_-	diguanylate cyclase	NA	W8CYM9	Bacillus_phage	31.7	7.5e-08
AVI61502.1|373661_374015_+	hypothetical protein	NA	NA	NA	NA	NA
AVI61503.1|374071_374779_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AVI61504.1|374933_375302_+|transposase	transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	44.7	2.8e-22
AVI61505.1|375933_376257_-	hypothetical protein	NA	NA	NA	NA	NA
AVI61506.1|376599_376911_-	hypothetical protein	NA	NA	NA	NA	NA
AVI61507.1|377012_380210_-	DNA breaking-rejoining enzyme, catalytic core	NA	NA	NA	NA	NA
AVI61508.1|380202_381582_-	hypothetical protein	NA	NA	NA	NA	NA
AVI61509.1|381624_382692_-	hypothetical protein	NA	NA	NA	NA	NA
AVI61510.1|383287_383656_-|transposase	transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	44.7	2.8e-22
AVI61511.1|383690_384044_-	hypothetical protein	NA	NA	NA	NA	NA
AVI61512.1|384356_384926_-	hypothetical protein	NA	NA	NA	NA	NA
AVI61513.1|384918_385737_-|transposase	transposase	transposase	U5P429	Shigella_phage	64.7	2.8e-99
>prophage 3
CP016490	Halomonas sp. GFAJ-1 chromosome, complete genome	3650492	1090284	1098044	3650492	transposase	Klosneuvirus(33.33%)	6	NA	NA
AVI62113.1|1090284_1092735_+	restriction endonuclease	NA	A0A2I5ARD8	Synechococcus_phage	26.7	9.8e-07
AVI62114.1|1092808_1094290_+	DNA methyltransferase	NA	A0A1V0SLK8	Klosneuvirus	30.2	1.1e-37
AVI62115.1|1094286_1095975_+	hypothetical protein	NA	A0A1V0SLK8	Klosneuvirus	26.1	9.1e-12
AVI62116.1|1095971_1096826_+	abortive phage resistance protein	NA	A3QSC6	Clostridium_virus	32.8	4.6e-28
AVI62117.1|1096827_1097727_-|transposase	transposase	transposase	A0A0N7C035	Escherichia_phage	58.3	3.0e-94
AVI62118.1|1097726_1098044_-|transposase	transposase	transposase	B6ETC4	Enterobacteria_phage	58.7	7.9e-26
>prophage 4
CP016490	Halomonas sp. GFAJ-1 chromosome, complete genome	3650492	2014810	2183649	3650492	capsid,integrase,transposase	Escherichia_phage(16.0%)	107	2019692:2019706	2078291:2078305
AVI62871.1|2014810_2015983_+|transposase	transposase	transposase	A0A077SLN2	Escherichia_phage	58.5	6.8e-123
AVI62872.1|2016150_2016744_-	hypothetical protein	NA	NA	NA	NA	NA
AVI62873.1|2016873_2017968_-	sulfate ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	45.2	3.9e-24
AVI62874.1|2017964_2018792_-	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
AVI62875.1|2018791_2019646_-	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA	NA
AVI62876.1|2019655_2020693_-	thiosulfate transporter subunit	NA	NA	NA	NA	NA
2019692:2019706	attL	GGCAAAGTGGTTTTC	NA	NA	NA	NA
AVI62877.1|2020898_2021600_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AVI62878.1|2021623_2022922_-	NADH dehydrogenase	NA	NA	NA	NA	NA
AVI62879.1|2023062_2023731_+	phosphoglycolate phosphatase, bacterial	NA	NA	NA	NA	NA
AVI62880.1|2023783_2024698_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVI62881.1|2025069_2025975_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AVI62882.1|2026134_2027574_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AVI64314.1|2027596_2028577_+	peptidase M19	NA	NA	NA	NA	NA
AVI62883.1|2028690_2030268_+	BCCT transporter	NA	A0A2I7QNT1	Vibrio_phage	22.3	1.3e-07
AVI62884.1|2030260_2032063_+	hypothetical protein	NA	NA	NA	NA	NA
AVI62885.1|2032059_2032827_+	hypothetical protein	NA	NA	NA	NA	NA
AVI62886.1|2032848_2033232_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AVI64315.1|2033426_2035028_+	NADH-quinone oxidoreductase subunit F	NA	NA	NA	NA	NA
AVI62887.1|2035024_2037823_+	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
AVI62888.1|2037857_2040956_-	acriflavin resistance protein	NA	NA	NA	NA	NA
AVI62889.1|2040939_2042037_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVI62890.1|2042298_2043273_+	malate dehydrogenase	NA	NA	NA	NA	NA
AVI62891.1|2043393_2044050_-	phosphoserine phosphatase	NA	NA	NA	NA	NA
AVI62892.1|2044223_2044718_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AVI62893.1|2044802_2047064_+	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	29.4	7.6e-14
AVI62894.1|2047046_2047820_-	hypothetical protein	NA	NA	NA	NA	NA
AVI62895.1|2047966_2049142_+	response regulator receiver protein	NA	B5LWA6	Feldmannia_species_virus	29.2	5.2e-06
AVI62896.1|2049138_2049936_+	hypothetical protein	NA	NA	NA	NA	NA
AVI62897.1|2049991_2050795_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AVI62898.1|2050918_2051749_+	thymidylate synthase	NA	A0A2R4A1R4	Microbacterium_phage	66.7	1.2e-105
AVI62899.1|2051745_2052285_+	diacylglycerol kinase	NA	A0A1I9S5V6	Bacillus_phage	41.6	6.9e-30
AVI62900.1|2052305_2053118_+	hypothetical protein	NA	NA	NA	NA	NA
AVI62901.1|2053383_2054433_+	porin	NA	Q1MVN1	Enterobacteria_phage	26.7	7.9e-06
AVI62902.1|2055490_2056810_+	UDP-glucose 6-dehydrogenase	NA	A0A127AXI2	Bacillus_phage	38.7	8.5e-82
AVI62903.1|2056960_2057698_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AVI62904.1|2057739_2058975_+	hypothetical protein	NA	NA	NA	NA	NA
AVI62905.1|2058971_2059433_+	oligosaccharide biosynthesis protein Alg14	NA	NA	NA	NA	NA
AVI62906.1|2059429_2059936_+	glycosyl transferase family 28	NA	NA	NA	NA	NA
AVI62907.1|2059932_2061021_+	GlcNAc transferase	NA	NA	NA	NA	NA
AVI62908.1|2061057_2062443_+	undecaprenyl-phosphate glucose phosphotransferase	NA	NA	NA	NA	NA
AVI62909.1|2062564_2063839_+	ligase	NA	NA	NA	NA	NA
AVI62910.1|2063835_2065080_-	hypothetical protein	NA	NA	NA	NA	NA
AVI62911.1|2065082_2065760_-	hypothetical protein	NA	NA	NA	NA	NA
AVI62912.1|2066469_2066727_+|transposase	transposase	transposase	S5VXZ8	Leptospira_phage	34.5	9.9e-11
AVI62913.1|2066772_2068365_+|transposase	transposase	transposase	S5VTD3	Leptospira_phage	39.9	8.7e-89
AVI62914.1|2068483_2069182_+	hypothetical protein	NA	NA	NA	NA	NA
AVI62915.1|2069243_2069432_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	NA	NA	NA	NA
AVI62916.1|2069483_2071070_-	hypothetical protein	NA	NA	NA	NA	NA
AVI62917.1|2071455_2072439_-|integrase	integrase	integrase	NA	NA	NA	NA
AVI62918.1|2072452_2074000_-	helicase	NA	NA	NA	NA	NA
AVI62919.1|2073996_2074605_-	hypothetical protein	NA	NA	NA	NA	NA
AVI62920.1|2075182_2077513_-	hypothetical protein	NA	NA	NA	NA	NA
AVI62921.1|2077500_2079855_-	hypothetical protein	NA	NA	NA	NA	NA
2078291:2078305	attR	GGCAAAGTGGTTTTC	NA	NA	NA	NA
AVI62922.1|2079857_2080622_-	hypothetical protein	NA	NA	NA	NA	NA
AVI62923.1|2081523_2081934_+	hypothetical protein	NA	NA	NA	NA	NA
AVI62924.1|2081933_2083670_+|capsid	capsid assembly protein	capsid	NA	NA	NA	NA
AVI62925.1|2083748_2084558_+	ABC transporter permease	NA	NA	NA	NA	NA
AVI62926.1|2084561_2085659_+	chain-length determining protein	NA	NA	NA	NA	NA
AVI62927.1|2085737_2086556_-|transposase	transposase	transposase	U5P429	Shigella_phage	64.7	2.8e-99
AVI62928.1|2086612_2086891_-|transposase	transposase	transposase	U5P4I9	Shigella_phage	62.5	6.9e-18
AVI62929.1|2087931_2088234_-|transposase	transposase	transposase	NA	NA	NA	NA
AVI62930.1|2088294_2088588_+	four helix bundle protein	NA	NA	NA	NA	NA
AVI62931.1|2088659_2090072_+	MBL fold hydrolase	NA	NA	NA	NA	NA
AVI62932.1|2090201_2091014_+	polysaccharide/polyol phosphate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	1.6e-09
AVI62933.1|2091025_2094376_+	hypothetical protein	NA	NA	NA	NA	NA
AVI62934.1|2094384_2095998_+	aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	24.2	5.8e-16
AVI62935.1|2096020_2096761_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AVI62936.1|2096757_2097411_+	HAD family hydrolase	NA	NA	NA	NA	NA
AVI64316.1|2097569_2098139_+	hypothetical protein	NA	NA	NA	NA	NA
AVI62937.1|2098135_2098879_+	hypothetical protein	NA	NA	NA	NA	NA
AVI64317.1|2098884_2099727_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	42.5	1.8e-48
AVI64318.1|2100535_2101024_+	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	NA	NA	NA	NA	NA
AVI64319.1|2101164_2102010_+	arabinose-5-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	40.6	4.2e-42
AVI62938.1|2102370_2102745_+	hypothetical protein	NA	NA	NA	NA	NA
AVI62939.1|2102716_2104318_+	phosphoglucomutase, alpha-D-glucose phosphate-specific	NA	NA	NA	NA	NA
AVI62940.1|2104484_2105657_+|transposase	transposase	transposase	A0A077SLN2	Escherichia_phage	58.5	8.8e-123
AVI62941.1|2106448_2107303_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.6	2.3e-48
AVI62942.1|2107388_2108147_+	3'(2'),5'-bisphosphate nucleotidase	NA	NA	NA	NA	NA
AVI62943.1|2108845_2109847_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AVI62944.1|2110386_2111772_+	channel protein TolC	NA	NA	NA	NA	NA
AVI62945.1|2111839_2112679_+	hypothetical protein	NA	NA	NA	NA	NA
AVI62946.1|2112763_2113561_+	multidrug transporter	NA	NA	NA	NA	NA
AVI62947.1|2113704_2144742_+	hypothetical protein	NA	NA	NA	NA	NA
AVI62948.1|2144738_2146544_+	hypothetical protein	NA	NA	NA	NA	NA
AVI62949.1|2146547_2148698_+	peptidase M50	NA	NA	NA	NA	NA
AVI62950.1|2148713_2150672_+	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
AVI62951.1|2150700_2151438_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVI62952.1|2151795_2152596_-|transposase	transposase	transposase	S5WIU1	Leptospira_phage	38.2	2.0e-46
AVI62953.1|2152616_2152850_-|transposase	transposase	transposase	NA	NA	NA	NA
AVI64320.1|2153256_2153931_-	hypothetical protein	NA	NA	NA	NA	NA
AVI62954.1|2154094_2155267_+|transposase	transposase	transposase	A0A077SLN2	Escherichia_phage	58.7	2.3e-123
AVI64321.1|2155362_2156694_-	HNH endonuclease	NA	Q331Y3	Clostridium_botulinum_C_phage	34.6	7.6e-38
AVI62955.1|2157368_2158721_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
AVI62956.1|2158828_2159242_+	nucleoside diphosphate kinase regulator	NA	NA	NA	NA	NA
AVI62957.1|2159253_2159796_-	antitermination protein NusG	NA	NA	NA	NA	NA
AVI62958.1|2159801_2161136_-	8-amino-7-oxononanoate synthase	NA	V5LQ39	Emiliania_huxleyi_virus	31.9	1.2e-46
AVI62959.1|2161132_2168494_-	polyketide synthase	NA	NA	NA	NA	NA
AVI62960.1|2168490_2170146_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AVI64322.1|2170147_2170903_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AVI62961.1|2170974_2172210_-	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AVI62962.1|2172211_2174221_-	capsule biosynthesis protein	NA	NA	NA	NA	NA
AVI62963.1|2174525_2176544_+	diguanylate cyclase	NA	NA	NA	NA	NA
AVI62964.1|2176612_2177560_+	malate transporter	NA	NA	NA	NA	NA
AVI62965.1|2177737_2179300_-	hypothetical protein	NA	NA	NA	NA	NA
AVI62966.1|2181250_2182219_-	hypothetical protein	NA	NA	NA	NA	NA
AVI62967.1|2182432_2183332_-|transposase	transposase	transposase	A0A0N7C035	Escherichia_phage	58.3	3.0e-94
AVI62968.1|2183331_2183649_-|transposase	transposase	transposase	B6ETC4	Enterobacteria_phage	58.7	7.9e-26
