The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP020013	Haemophilus influenzae strain 6P32H1 chromosome, complete genome	1901533	80573	92669	1901533	tRNA	Vibrio_phage(14.29%)	11	NA	NA
AVJ07750.1|80573_82697_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	62.8	1.6e-260
AVJ07751.1|82814_83675_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
AVJ07752.1|83835_85215_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	29.7	6.6e-53
AVJ07753.1|85317_85827_+	cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	32.9	7.2e-13
AVJ07754.1|85881_86688_+	putative DNase	NA	NA	NA	NA	NA
AVJ07755.1|86731_87265_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ07756.1|87323_87647_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	43.4	2.0e-16
AVJ07757.1|87766_88762_-	D-lactate dehydrogenase, NAD-dependent	NA	M1H502	Paramecium_bursaria_Chlorella_virus	39.9	6.4e-66
AVJ07758.1|88774_89884_-	beta-eliminating lyase family protein	NA	A0A141ZJM2	Faustovirus	26.8	1.1e-13
AVJ07759.1|90475_91312_+	cobQ/CobB/MinD/ParA nucleotide binding domain protein	NA	NA	NA	NA	NA
AVJ07760.1|91313_92669_+	replicative DNA helicase	NA	O80281	Escherichia_phage	43.6	3.4e-94
>prophage 2
CP020013	Haemophilus influenzae strain 6P32H1 chromosome, complete genome	1901533	459484	552726	1901533	integrase,tail,head,tRNA,portal,holin,terminase	Mannheimia_phage(12.24%)	115	454768:454785	548892:548909
454768:454785	attL	AACCCATTTAATCAATTC	NA	NA	NA	NA
AVJ08086.1|459484_460225_+|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
AVJ08087.1|460309_460654_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08088.1|460859_461390_+	ferredoxin-type protein NapF	NA	NA	NA	NA	NA
AVJ08089.1|461382_461664_+	napD family protein	NA	NA	NA	NA	NA
AVJ08090.1|461724_464184_+	periplasmic nitrate reductase, large subunit	NA	NA	NA	NA	NA
AVJ08091.1|464268_465078_+	mauM/NapG ferredoxin-type family protein	NA	NA	NA	NA	NA
AVJ08092.1|465077_465941_+	ferredoxin-type protein	NA	NA	NA	NA	NA
AVJ08093.1|465946_466390_+	diheme cytochrome c napB	NA	NA	NA	NA	NA
AVJ08094.1|466404_467007_+	periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family protein	NA	NA	NA	NA	NA
AVJ08095.1|467166_467811_-	adenylate kinase	NA	NA	NA	NA	NA
AVJ08096.1|467895_469134_-	ampG-like permease family protein	NA	NA	NA	NA	NA
AVJ08097.1|469105_469219_-	hypothetical protein	NA	NA	NA	NA	NA
AVJ08098.1|469314_470331_-	UDP-glucose 4-epimerase	NA	A0A2K9L1R4	Tupanvirus	48.9	4.2e-89
AVJ08099.1|470503_471205_-	alpha-2,3-/2,8-sialyltransferase	NA	NA	NA	NA	NA
AVJ08100.1|471908_472631_+	ABC transporter family protein	NA	G3M9Y6	Bacillus_virus	34.5	1.5e-27
AVJ08101.1|472627_473365_+	binding-protein-dependent transport system inner membrane component family protein	NA	G3M9Y4	Bacillus_virus	24.5	2.2e-10
AVJ08102.1|473420_474332_+	putative thiamine biosynthesis protein	NA	NA	NA	NA	NA
AVJ08103.1|474341_474989_+	transcriptional activator, TenA family	NA	NA	NA	NA	NA
AVJ08104.1|475082_475898_-	manganese transport system membrane protein mntB	NA	NA	NA	NA	NA
AVJ08105.1|475890_476739_-	ABC 3 transport family protein	NA	NA	NA	NA	NA
AVJ08106.1|476742_477663_-	ABC transporter family protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.4	1.8e-17
AVJ08107.1|477662_478544_-	periplasmic solute binding family protein	NA	NA	NA	NA	NA
AVJ08108.1|478908_479787_-	beta-lactamase enzyme family protein	NA	NA	NA	NA	NA
AVJ08109.1|479818_479947_-	hypothetical protein	NA	NA	NA	NA	NA
AVJ08110.1|480033_481185_+	23S rRNA methyltransferase	NA	NA	NA	NA	NA
AVJ08111.1|481285_481825_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA	NA
AVJ08112.1|481896_482808_+	helix-turn-helix domain protein	NA	NA	NA	NA	NA
AVJ08113.1|482816_483923_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	NA	NA	NA	NA	NA
AVJ08114.1|483932_485204_+|tRNA	histidine--tRNA ligase	tRNA	A0A1V0SLE3	Klosneuvirus	26.2	9.8e-27
AVJ08115.1|485221_485836_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08116.1|485886_486081_-	feS assembly protein IscX	NA	NA	NA	NA	NA
AVJ08117.1|486080_486422_-	ferredoxin, 2Fe-2S type, ISC system	NA	NA	NA	NA	NA
AVJ08118.1|486461_488321_-	fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.5	8.0e-110
AVJ08119.1|488339_489026_-	hypothetical protein	NA	NA	NA	NA	NA
AVJ08120.1|489076_489601_-	fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
AVJ08121.1|489613_489937_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	46.7	4.4e-24
AVJ08122.1|489994_490375_-	scaffold protein involved in iron-sulfur cluster assembly	NA	A0A218MKD1	uncultured_virus	80.6	1.4e-53
AVJ08123.1|490434_491649_-	cysteine desulfurase IscS	NA	H7BUW1	unidentified_phage	35.5	1.5e-32
AVJ08124.1|491715_492168_-	iron-sulfur cluster assembly transcription factor IscR	NA	NA	NA	NA	NA
AVJ08125.1|492220_492946_-|tRNA	tRNA:Cm32/Um32 methyltransferase	tRNA	NA	NA	NA	NA
AVJ08126.1|493497_493611_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08127.1|493594_493882_-|tRNA	putative s-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	F6MIM0	Haemophilus_phage	64.1	5.1e-32
AVJ08128.1|493924_494116_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08129.1|494072_494696_-	putative orf32	NA	Q94MX9	Haemophilus_virus	49.7	4.2e-31
AVJ08130.1|494770_495046_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08131.1|495023_495332_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08132.1|495338_497282_-	phage Tail Collar domain protein	NA	Q94MY0	Haemophilus_virus	53.6	3.2e-125
AVJ08133.1|497292_500943_-	fibronectin type III domain protein	NA	A0A0R6PIC9	Moraxella_phage	37.2	2.9e-140
AVJ08134.1|500946_501414_-|tail	putative prophage LambdaSo, tail assembly protein I	tail	A0A1P8DTG7	Proteus_phage	45.3	1.3e-21
AVJ08135.1|501604_502312_-	nlpC/P60 family protein	NA	A0A1B1IV85	uncultured_Mediterranean_phage	43.2	9.9e-53
AVJ08136.1|502313_502964_-|tail	phage minor tail protein L	tail	Q6JIL5	Burkholderia_virus	39.6	2.5e-34
AVJ08137.1|503683_504217_-	hypothetical protein	NA	NA	NA	NA	NA
AVJ08138.1|504623_506909_-	hypothetical protein	NA	H6WRV7	Salmonella_phage	31.9	1.7e-29
AVJ08139.1|506943_507237_-|tail	minor tail T family protein	tail	NA	NA	NA	NA
AVJ08140.1|507311_507695_-|tail	bacteriophage lambda minor tail family protein	tail	NA	NA	NA	NA
AVJ08141.1|507700_508201_-|tail	phage tail family protein	tail	O64327	Escherichia_phage	56.1	7.5e-39
AVJ08142.1|508193_508394_-|tail	phage minor tail U family protein	tail	NA	NA	NA	NA
AVJ08143.1|508594_509140_-|tail	prophage minor tail Z family protein	tail	K7PKQ5	Enterobacteria_phage	45.6	4.2e-27
AVJ08144.1|509139_509373_-	ATP-binding sugar transporter from pro-phage family protein	NA	NA	NA	NA	NA
AVJ08145.1|509425_509749_-	hypothetical protein	NA	K7PJY3	Enterobacterial_phage	42.7	9.5e-11
AVJ08146.1|509827_511564_-|head	mu-like prophage major head subunit gpT family protein	head	A0A1B0YZU0	Pseudomonas_phage	55.5	5.8e-163
AVJ08147.1|511805_513329_-|portal	phage portal protein, lambda family	portal	S5MW34	Escherichia_phage	57.9	2.9e-158
AVJ08148.1|513332_513551_-	hypothetical protein	NA	NA	NA	NA	NA
AVJ08149.1|513547_515668_-|terminase	phage terminase large subunit family protein	terminase	K7PH52	Enterobacterial_phage	66.7	1.4e-272
AVJ08150.1|515670_516087_-	hypothetical protein	NA	K7PJY2	Enterobacterial_phage	51.4	2.7e-34
AVJ08151.1|516420_516645_-	hypothetical protein	NA	NA	NA	NA	NA
AVJ08152.1|517044_517350_-	hypothetical protein	NA	Q7Y5U9	Haemophilus_phage	58.0	7.3e-21
AVJ08153.1|517360_517954_-	chitinase class I family protein	NA	Q7Y5V0	Haemophilus_phage	55.5	1.1e-57
AVJ08154.1|517928_518288_-|holin	phage holin, lambda family	holin	NA	NA	NA	NA
AVJ08155.1|518527_519046_-	phage antitermination Q family protein	NA	G8C7V7	Escherichia_phage	34.0	3.4e-18
AVJ08156.1|519046_519592_-	bacteriophage Lambda NinG family protein	NA	D0UIK8	Aggregatibacter_phage	71.9	8.1e-63
AVJ08157.1|519680_520100_-	ninB family protein	NA	Q7Y5V7	Haemophilus_phage	83.3	3.1e-62
AVJ08158.1|520136_520358_-	hypothetical protein	NA	A0A0M3LPX7	Mannheimia_phage	59.7	1.3e-16
AVJ08159.1|520354_521278_-	N-6 DNA Methylase family protein	NA	A0A0M3LQ47	Mannheimia_phage	58.5	2.9e-97
AVJ08160.1|521274_521856_-	DNA N-6-adenine-methyltransferase family protein	NA	A0A0M3LNW2	Mannheimia_phage	55.5	1.1e-49
AVJ08161.1|521852_522494_-	replication P family protein	NA	A0A1I9KFB0	Aeromonas_phage	24.9	8.2e-06
AVJ08162.1|522478_523231_-	helix-turn-helix domain protein	NA	D0UIL5	Aggregatibacter_phage	68.5	3.1e-60
AVJ08163.1|523233_523908_-	phage regulatory Rha family protein	NA	D0UIL6	Aggregatibacter_phage	55.6	5.0e-62
AVJ08164.1|523956_524397_-	hypothetical protein	NA	A0A0U4B0E3	Pseudomonas_phage	31.5	1.3e-13
AVJ08165.1|524451_524691_-	putative 8.4 kDa cro protein	NA	A0A2I6PIE5	Escherichia_phage	49.2	7.0e-11
AVJ08166.1|524920_525457_+	helix-turn-helix family protein	NA	A0A0M3LSL8	Mannheimia_phage	52.1	1.1e-40
AVJ08167.1|525517_526255_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08168.1|526251_527067_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08169.1|527694_527865_-	hypothetical protein	NA	NA	NA	NA	NA
AVJ08170.1|527879_528101_+	putative orfG, econed on plasmid pRF1	NA	NA	NA	NA	NA
AVJ08171.1|528373_528586_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08172.1|528554_528671_-	hypothetical protein	NA	NA	NA	NA	NA
AVJ08173.1|528729_529053_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08174.1|529049_529343_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08175.1|529355_530276_+	recombinase, phage RecT family protein	NA	A0A0M3LNU3	Mannheimia_phage	71.9	2.8e-116
AVJ08176.1|530250_530901_+	hypothetical protein	NA	A0A0M3LP90	Mannheimia_phage	70.2	1.0e-83
AVJ08177.1|530900_531335_+	single-stranded DNA-binding family protein	NA	R9TP78	Rhizobium_phage	36.8	7.5e-19
AVJ08178.1|531396_532419_+	putative gp53	NA	A0A0U4B0I3	Pseudomonas_phage	57.3	5.7e-33
AVJ08179.1|532543_533440_+	recombination associated protein	NA	S4TWL4	Salmonella_phage	43.1	1.1e-56
AVJ08180.1|533436_533673_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08181.1|533669_534029_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08182.1|534036_535203_+	DNA (cytosine-5-)-methyltransferase family protein	NA	A0A2I7RFJ9	Vibrio_phage	47.6	8.0e-92
AVJ08183.1|535199_535442_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08184.1|535558_535717_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08185.1|535720_536032_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08186.1|536381_537407_+|integrase	phage integrase family protein	integrase	K7PKD7	Enterobacteria_phage	35.4	7.4e-57
AVJ08187.1|537840_538302_-	peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
AVJ08188.1|538325_539609_-	tol-Pal system beta propeller repeat protein TolB	NA	NA	NA	NA	NA
AVJ08189.1|539650_540658_-	protein TolA	NA	NA	NA	NA	NA
AVJ08190.1|540922_541342_-	tolR	NA	NA	NA	NA	NA
AVJ08191.1|541412_542099_-	protein TolQ	NA	NA	NA	NA	NA
AVJ08192.1|542115_542526_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AVJ08193.1|542851_544774_+	DEAD_2 family protein	NA	A0A127AW80	Bacillus_phage	33.1	2.5e-98
AVJ08194.1|544786_545497_+	putative peptidase	NA	NA	NA	NA	NA
AVJ08195.1|545521_546073_+	outer membrane lipo, Slp family protein	NA	NA	NA	NA	NA
AVJ08196.1|546115_547804_+	fadD	NA	A0A2H4PQU7	Staphylococcus_phage	27.0	3.8e-26
AVJ08197.1|547859_549002_+	ribonuclease D	NA	U3REX2	uncultured_virus	31.4	1.4e-08
548892:548909	attR	GAATTGATTAAATGGGTT	NA	NA	NA	NA
AVJ08198.1|549045_550929_-	acyltransferase family protein	NA	A0A1R3Y5Q6	Salmonella_virus	34.3	9.7e-55
AVJ08199.1|551001_552093_-	50S ribosome-binding GTPase family protein	NA	NA	NA	NA	NA
AVJ08200.1|552141_552726_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
>prophage 3
CP020013	Haemophilus influenzae strain 6P32H1 chromosome, complete genome	1901533	1200363	1205458	1901533		Escherichia_phage(100.0%)	6	NA	NA
AVJ08837.1|1200363_1200864_-	ferredoxin-type protein NapF	NA	A0A077SLP0	Escherichia_phage	32.0	3.2e-13
AVJ08838.1|1200863_1201475_-	nitrate reductase delta subunit	NA	A0A077SLS7	Escherichia_phage	32.5	2.3e-21
AVJ08839.1|1201586_1202426_-	dimethyl sulfoxide reductase, chain C	NA	A0A077SK59	Escherichia_phage	31.5	7.2e-18
AVJ08840.1|1202427_1203045_-	dimethylsulfoxide reductase, chain B	NA	A0A077SL61	Escherichia_phage	57.3	8.3e-72
AVJ08841.1|1203055_1203472_-	molybdopterin dinucleotide binding domain protein	NA	A0A077SK27	Escherichia_phage	56.2	3.8e-36
AVJ08842.1|1203637_1205458_-	dimethyl sulfoxide reductase, chain A	NA	A0A077SK27	Escherichia_phage	50.3	2.3e-162
>prophage 4
CP020013	Haemophilus influenzae strain 6P32H1 chromosome, complete genome	1901533	1341616	1350134	1901533		Planktothrix_phage(16.67%)	9	NA	NA
AVJ08976.1|1341616_1342600_-	dppF	NA	G9BWD6	Planktothrix_phage	33.2	1.4e-20
AVJ08977.1|1342602_1343595_-	dppD	NA	G3M9Y6	Bacillus_virus	30.8	5.7e-14
AVJ08978.1|1343604_1344492_-	dppC	NA	NA	NA	NA	NA
AVJ08979.1|1344506_1345478_-	dppB	NA	NA	NA	NA	NA
AVJ08980.1|1345452_1345569_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ08981.1|1345597_1347778_-	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	1.8e-116
AVJ08982.1|1348396_1349026_-	4Fe-4S single cluster domain protein	NA	S4TZT1	uncultured_phage	30.3	8.6e-16
AVJ08983.1|1349032_1349458_-	queuosine biosynthesis protein QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.7	7.8e-21
AVJ08984.1|1349450_1350134_-	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	2.3e-54
>prophage 5
CP020013	Haemophilus influenzae strain 6P32H1 chromosome, complete genome	1901533	1538564	1545243	1901533		Sodalis_phage(16.67%)	10	NA	NA
AVJ09177.1|1538564_1538855_+	integration host factor, alpha subunit	NA	Q2A099	Sodalis_phage	38.2	1.5e-10
AVJ09178.1|1538907_1539393_+	putative lipoprotein	NA	A0A2H5BM69	Streptomyces_phage	39.3	2.3e-16
AVJ09179.1|1539458_1540412_+	WYL domain protein	NA	NA	NA	NA	NA
AVJ09180.1|1540470_1540926_+	5' nucleotidase, deoxy family protein	NA	I6X231	Vibriophage	63.0	3.5e-43
AVJ09181.1|1540909_1541620_+	sir2 family protein	NA	R9TG77	Vibrio_phage	40.1	3.2e-27
AVJ09182.1|1541698_1542193_+	opioid growth factor receptor (OGFr) conserved region family protein	NA	NA	NA	NA	NA
AVJ09183.1|1542206_1542923_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ09184.1|1542980_1543982_-	virulence RhuM family protein	NA	Q9JMN3	Wolbachia_phage	39.8	5.4e-20
AVJ09185.1|1544200_1544401_+	ftsk gamma domain protein	NA	NA	NA	NA	NA
AVJ09186.1|1544397_1545243_+	sir2 family protein	NA	A0A1C3S788	Escherichia_phage	22.9	7.0e-05
>prophage 6
CP020013	Haemophilus influenzae strain 6P32H1 chromosome, complete genome	1901533	1620082	1632067	1901533	tRNA	Acinetobacter_phage(42.86%)	11	NA	NA
AVJ09284.1|1620082_1622929_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.5	1.7e-148
AVJ09285.1|1622962_1623235_-	hydrogenase assembly chaperone HypC/HupF	NA	NA	NA	NA	NA
AVJ09286.1|1623296_1624727_-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase	NA	A0A0P0IR83	Acinetobacter_phage	38.0	1.2e-33
AVJ09287.1|1624767_1625769_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	39.6	4.4e-46
AVJ09288.1|1625821_1626208_-	putative anthranilate phosphoribosyltransferase	NA	NA	NA	NA	NA
AVJ09289.1|1626256_1626844_-	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	40.0	2.2e-34
AVJ09290.1|1626856_1628413_-	anthranilate synthase component I	NA	A0A0B5J984	Pandoravirus	33.2	2.4e-22
AVJ09291.1|1628514_1629279_-	glycosyl transferase 2 family protein	NA	A7IW34	Paramecium_bursaria_Chlorella_virus	29.1	1.5e-14
AVJ09292.1|1629543_1630041_-	putative ferritin-1	NA	NA	NA	NA	NA
AVJ09293.1|1630056_1630545_-	putative ferritin-1	NA	NA	NA	NA	NA
AVJ09294.1|1631047_1632067_+	phosphate ABC transporter, phosphate-binding protein PstS	NA	A0A222YW41	Synechococcus_phage	40.5	1.2e-51
