assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002982135.1_ASM298213v1	CP019981	Pediococcus inopinatus strain DSM 20285 chromosome, complete genome	1	203563-203707	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	Orphan	GAACCTTGCTTATATTTTTTGGTTTGATTTGTGGAGCTGTCCTCAA	46	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	NA,NA|80aa|down_4|CP019981.1_206839_207079_-	NA|173aa|up_9|CP019981.1_192716_193235_+	pfam16069, DUF4811, Domain of unknown function (DUF4811)	NA|334aa|up_8|CP019981.1_193340_194342_-	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|463aa|up_7|CP019981.1_194331_195720_-	PRK09034, PRK09034, aspartate kinase; Reviewed	NA|436aa|up_6|CP019981.1_196175_197483_+	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase	NA|237aa|up_5|CP019981.1_197587_198298_+	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|389aa|up_4|CP019981.1_198302_199469_+	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins	NA|308aa|up_3|CP019981.1_199492_200416_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|261aa|up_2|CP019981.1_200408_201191_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|398aa|up_1|CP019981.1_201209_202403_+	PRK07309, PRK07309, pyridoxal phosphate-dependent aminotransferase	NA|354aa|up_0|CP019981.1_202438_203500_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|111aa|down_0|CP019981.1_203870_204203_-	COG1416, COG1416, Uncharacterized conserved protein [Function unknown]	NA|316aa|down_1|CP019981.1_204212_205160_-	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease	NA|230aa|down_2|CP019981.1_205178_205868_-	pfam02805, Ada_Zn_binding, Metal binding domain of Ada	NA|67aa|down_3|CP019981.1_206121_206322_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|80aa|down_4|CP019981.1_206839_207079_-	NA	NA|245aa|down_5|CP019981.1_207240_207975_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|336aa|down_6|CP019981.1_207985_208993_-	pfam09084, NMT1, NMT1/THI5 like	NA|255aa|down_7|CP019981.1_208989_209754_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|99aa|down_8|CP019981.1_209725_210022_-	pfam01910, Thiamine_BP, Thiamine-binding protein	NA|237aa|down_9|CP019981.1_210902_211613_+	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium
GCA_002982135.1_ASM298213v1	CP019981	Pediococcus inopinatus strain DSM 20285 chromosome, complete genome	2	210758-210895	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	Orphan	ATTTTGCGGAAGCAAAATAGACATTAAAAACGAAAAGGAG	40	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	NA|80aa|up_4|CP019981.1_206839_207079_-,NA	NA|354aa|up_9|CP019981.1_202438_203500_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|111aa|up_8|CP019981.1_203870_204203_-	COG1416, COG1416, Uncharacterized conserved protein [Function unknown]	NA|316aa|up_7|CP019981.1_204212_205160_-	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease	NA|230aa|up_6|CP019981.1_205178_205868_-	pfam02805, Ada_Zn_binding, Metal binding domain of Ada	NA|67aa|up_5|CP019981.1_206121_206322_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|80aa|up_4|CP019981.1_206839_207079_-	NA	NA|245aa|up_3|CP019981.1_207240_207975_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|336aa|up_2|CP019981.1_207985_208993_-	pfam09084, NMT1, NMT1/THI5 like	NA|255aa|up_1|CP019981.1_208989_209754_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|99aa|up_0|CP019981.1_209725_210022_-	pfam01910, Thiamine_BP, Thiamine-binding protein	NA|237aa|down_0|CP019981.1_210902_211613_+	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|401aa|down_1|CP019981.1_211849_213052_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|326aa|down_2|CP019981.1_213095_214073_+	PRK09653, eutD, phosphotransacetylase	NA|303aa|down_3|CP019981.1_214995_215904_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|151aa|down_4|CP019981.1_215983_216436_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|474aa|down_5|CP019981.1_216617_218039_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|297aa|down_6|CP019981.1_218083_218974_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|148aa|down_7|CP019981.1_219045_219489_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|322aa|down_8|CP019981.1_219625_220591_-	PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional	NA|430aa|down_9|CP019981.1_220616_221906_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional
GCA_002982135.1_ASM298213v1	CP019981	Pediococcus inopinatus strain DSM 20285 chromosome, complete genome	3	253260-253400	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	Orphan	ATGAAAAGGAGCCAATCCGACTAACTGCTTTAGCAGAGTAG	41	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	NA|112aa|up_8|CP019981.1_243557_243893_-,NA|157aa|down_2|CP019981.1_257483_257954_+,NA|153aa|down_6|CP019981.1_260852_261311_+	NA|190aa|up_9|CP019981.1_242981_243551_-	pfam16729, DUF5067, Domain of unknown function (DUF5067)	NA|112aa|up_8|CP019981.1_243557_243893_-	NA	NA|181aa|up_7|CP019981.1_244045_244588_+	pfam08876, DUF1836, Domain of unknown function (DUF1836)	NA|467aa|up_6|CP019981.1_244991_246392_+	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|520aa|up_5|CP019981.1_246535_248095_+	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|510aa|up_4|CP019981.1_248095_249625_+	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|452aa|up_3|CP019981.1_249694_251050_-	PRK07251, PRK07251, FAD-containing oxidoreductase	NA|144aa|up_2|CP019981.1_251155_251587_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|168aa|up_1|CP019981.1_251620_252124_-	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|241aa|up_0|CP019981.1_252246_252969_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|795aa|down_0|CP019981.1_253459_255844_+	PRK05261, PRK05261, phosphoketolase	NA|428aa|down_1|CP019981.1_256034_257318_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|157aa|down_2|CP019981.1_257483_257954_+	NA	NA|249aa|down_3|CP019981.1_258011_258758_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|297aa|down_4|CP019981.1_258782_259673_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|153aa|down_5|CP019981.1_259746_260205_-	pfam00582, Usp, Universal stress protein family	NA|153aa|down_6|CP019981.1_260852_261311_+	NA	NA|215aa|down_7|CP019981.1_261319_261964_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|413aa|down_8|CP019981.1_262230_263469_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|209aa|down_9|CP019981.1_265271_265898_-	PRK10847, PRK10847, DedA family protein
GCA_002982135.1_ASM298213v1	CP019981	Pediococcus inopinatus strain DSM 20285 chromosome, complete genome	4	342887-343028	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	Orphan	TAAGATTTTGCAAATGCAAAATAGACAAAAATTTTGAGGAGGA	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	NA|117aa|up_6|CP019981.1_338205_338556_+,NA|61aa|up_5|CP019981.1_338665_338848_-,NA	NA|318aa|up_9|CP019981.1_333640_334594_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|414aa|up_8|CP019981.1_334727_335969_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|104aa|up_7|CP019981.1_337605_337917_-	cd01544, PBP1_GalR, ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism	NA|117aa|up_6|CP019981.1_338205_338556_+	NA	NA|61aa|up_5|CP019981.1_338665_338848_-	NA	NA|473aa|up_4|CP019981.1_338899_340318_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|102aa|up_3|CP019981.1_340427_340733_-	COG3414, SgaB, Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]	NA|164aa|up_2|CP019981.1_340790_341282_-	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|263aa|up_1|CP019981.1_341523_342312_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|143aa|up_0|CP019981.1_342308_342737_+	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|173aa|down_0|CP019981.1_343034_343553_+	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|332aa|down_1|CP019981.1_343728_344724_+	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|226aa|down_2|CP019981.1_344788_345466_+	pfam16161, DUF4867, Domain of unknown function (DUF4867)	NA|163aa|down_3|CP019981.1_345724_346213_+	pfam12802, MarR_2, MarR family	NA|480aa|down_4|CP019981.1_346187_347627_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|145aa|down_5|CP019981.1_347825_348260_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|172aa|down_6|CP019981.1_348284_348800_+	pfam01625, PMSR, Peptide methionine sulfoxide reductase	NA|234aa|down_7|CP019981.1_349111_349813_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|293aa|down_8|CP019981.1_349845_350724_-	cd09024, Aldose_epim_lacX, Aldose 1-epimerase, similar to Lactococcus lactis lacX	NA|271aa|down_9|CP019981.1_350899_351712_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily
GCA_002982135.1_ASM298213v1	CP019981	Pediococcus inopinatus strain DSM 20285 chromosome, complete genome	5	1251512-1251664	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	Orphan	TTCAACACGGATGTCCATCCGATCTACGCCATTATCATGGCTTGTCGGACTGGC	54	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	NA,NA|94aa|down_7|CP019981.1_1259012_1259294_+	NA|212aa|up_9|CP019981.1_1239658_1240294_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|217aa|up_8|CP019981.1_1240305_1240956_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|481aa|up_7|CP019981.1_1241496_1242939_+	pfam00665, rve, Integrase core domain	NA|182aa|up_6|CP019981.1_1243020_1243566_-	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|282aa|up_5|CP019981.1_1243590_1244436_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|221aa|up_4|CP019981.1_1244579_1245242_-	PRK00024, PRK00024, DNA repair protein RadC	NA|440aa|up_3|CP019981.1_1245283_1246603_-	TIGR01499, Folylpolyglutamate_synthase, folylpolyglutamate synthase/dihydrofolate synthase	NA|888aa|up_2|CP019981.1_1246692_1249356_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|169aa|up_1|CP019981.1_1249632_1250139_-	cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)	NA|406aa|up_0|CP019981.1_1250233_1251451_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|384aa|down_0|CP019981.1_1251678_1252830_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|570aa|down_1|CP019981.1_1253048_1254758_-	PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional	NA|157aa|down_2|CP019981.1_1254919_1255390_+	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms]	NA|203aa|down_3|CP019981.1_1255582_1256191_+	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|197aa|down_4|CP019981.1_1256246_1256837_-	pfam06335, DUF1054, Protein of unknown function (DUF1054)	NA|155aa|down_5|CP019981.1_1256940_1257405_+	pfam07997, DUF1694, Protein of unknown function (DUF1694)	NA|425aa|down_6|CP019981.1_1257414_1258689_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|94aa|down_7|CP019981.1_1259012_1259294_+	NA	NA|158aa|down_8|CP019981.1_1259376_1259850_+	pfam00582, Usp, Universal stress protein family	NA|186aa|down_9|CP019981.1_1259910_1260468_-	pfam03352, Adenine_glyco, Methyladenine glycosylase
GCA_002982135.1_ASM298213v1	CP019981	Pediococcus inopinatus strain DSM 20285 chromosome, complete genome	6	1335296-1335451	6	CRISPRCasFinder	no	csa3,DEDDh	csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	Type I-A	GACCATGTTTCTTGCGGCTTGAATTTAAGCCACAAGAATGGTTACCGGCCG	51	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	NA|102aa|up_7|CP019981.1_1327811_1328117_-,NA|66aa|up_6|CP019981.1_1328273_1328471_+,NA	NA|271aa|up_9|CP019981.1_1325867_1326680_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|213aa|up_8|CP019981.1_1326756_1327395_-	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily	NA|102aa|up_7|CP019981.1_1327811_1328117_-	NA	NA|66aa|up_6|CP019981.1_1328273_1328471_+	NA	NA|107aa|up_5|CP019981.1_1328537_1328858_-	NF033202, GW_glycos_SH3, GW domain-containing glycosaminoglycan-binding protein	NA|402aa|up_4|CP019981.1_1328638_1329844_-	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|607aa|up_3|CP019981.1_1330087_1331908_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|455aa|up_2|CP019981.1_1332137_1333502_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|293aa|up_1|CP019981.1_1333527_1334406_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|up_0|CP019981.1_1334402_1335254_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|215aa|down_0|CP019981.1_1335527_1336172_+	pfam07099, DUF1361, Protein of unknown function (DUF1361)	NA|244aa|down_1|CP019981.1_1336233_1336965_-	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|285aa|down_2|CP019981.1_1337233_1338088_-	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase	NA|305aa|down_3|CP019981.1_1338162_1339077_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	DEDDh|179aa|down_4|CP019981.1_1339183_1339720_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|170aa|down_5|CP019981.1_1339712_1340222_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|157aa|down_6|CP019981.1_1340218_1340689_-	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE	NA|241aa|down_7|CP019981.1_1340692_1341415_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|291aa|down_8|CP019981.1_1341549_1342422_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|191aa|down_9|CP019981.1_1342451_1343024_+	COG4894, COG4894, Uncharacterized conserved protein [Function unknown]
GCA_002982135.1_ASM298213v1	CP019981	Pediococcus inopinatus strain DSM 20285 chromosome, complete genome	7	1550887-1551042	7	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	Orphan	GCTCCTTTTCATTTTCCAATGTCTATTTTGCTTTCAGCAAAATCCTATTATCAAC	55	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	NA,NA|92aa|down_2|CP019981.1_1553210_1553486_-,NA|70aa|down_8|CP019981.1_1557261_1557471_+,NA|305aa|down_9|CP019981.1_1557490_1558405_-	NA|427aa|up_9|CP019981.1_1540909_1542190_-	PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed	NA|533aa|up_8|CP019981.1_1542424_1544023_-	PRK05380, pyrG, CTP synthetase; Validated	NA|193aa|up_7|CP019981.1_1544199_1544778_-	TIGR04567, DNA-directed_RNA_polymerase_subunit_delta, DNA-directed RNA polymerase delta subunit	NA|147aa|up_6|CP019981.1_1544823_1545264_-	pfam09148, DUF1934, Domain of unknown function (DUF1934)	NA|459aa|up_5|CP019981.1_1545413_1546790_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|268aa|up_4|CP019981.1_1546786_1547590_+	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional	NA|136aa|up_3|CP019981.1_1547639_1548047_-	pfam13038, DUF3899, Domain of unknown function (DUF3899)	NA|297aa|up_2|CP019981.1_1548036_1548927_-	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|358aa|up_1|CP019981.1_1549068_1550142_-	pfam11797, DUF3324, Protein of unknown function C-terminal (DUF3324)	NA|237aa|up_0|CP019981.1_1550168_1550879_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|119aa|down_0|CP019981.1_1551059_1551416_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|504aa|down_1|CP019981.1_1551476_1552988_-	pfam10500, SR-25, Nuclear RNA-splicing-associated protein	NA|92aa|down_2|CP019981.1_1553210_1553486_-	NA	NA|442aa|down_3|CP019981.1_1553494_1554820_-	pfam05043, Mga, Mga helix-turn-helix domain	NA|198aa|down_4|CP019981.1_1554903_1555497_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|65aa|down_5|CP019981.1_1555528_1555723_-	COG5547, COG5547, Small integral membrane protein [Function unknown]	NA|156aa|down_6|CP019981.1_1555733_1556201_-	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP	NA|297aa|down_7|CP019981.1_1556315_1557206_-	cd05355, SDR_c1, classical (c) SDR, subgroup 1	NA|70aa|down_8|CP019981.1_1557261_1557471_+	NA	NA|305aa|down_9|CP019981.1_1557490_1558405_-	NA
GCA_002982135.1_ASM298213v1	CP019981	Pediococcus inopinatus strain DSM 20285 chromosome, complete genome	8	1718641-1723164	8,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	Type II-A,Type II-C,Type II-B	GATCTTAACTATATTGATTCGACACTCTTCTAAAAC,GATCTTAACTATATTGATTCGACACTCTTCTAAAAC,GATCTTAACTATATTGATTCGACACTCTTCTAAAAC	36,36,36	2	3	1719997-1720026|1721053-1721082|1721053-1721082	CP019981.1_1566728-1566757|CP019983.1_4977-5006|CP019983.1_35446-35475	NA:NA:NA	68,68,66	68	TypeII-A,TypeII-C,TypeII-B	csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	NA,NA|82aa|down_7|CP019981.1_1732515_1732761_+	NA|298aa|up_9|CP019981.1_1708275_1709169_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|340aa|up_8|CP019981.1_1710115_1711135_+	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively	NA|272aa|up_7|CP019981.1_1711193_1712009_-	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|158aa|up_6|CP019981.1_1712150_1712624_-	pfam02464, CinA, Competence-damaged protein	NA|515aa|up_5|CP019981.1_1712728_1714273_-	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]	NA|270aa|up_4|CP019981.1_1714277_1715087_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|263aa|up_3|CP019981.1_1715083_1715872_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|269aa|up_2|CP019981.1_1715868_1716675_-	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|312aa|up_1|CP019981.1_1716766_1717702_-	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|149aa|up_0|CP019981.1_1718118_1718565_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	csn2|224aa|down_0|CP019981.1_1723194_1723866_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|CP019981.1_1723862_1724168_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|301aa|down_2|CP019981.1_1724145_1725048_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1379aa|down_3|CP019981.1_1725265_1729402_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|299aa|down_4|CP019981.1_1729603_1730500_+	COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|408aa|down_5|CP019981.1_1730492_1731716_+	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]	NA|171aa|down_6|CP019981.1_1731794_1732307_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|82aa|down_7|CP019981.1_1732515_1732761_+	NA	NA|161aa|down_8|CP019981.1_1732779_1733262_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|330aa|down_9|CP019981.1_1733373_1734363_+	COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
GCA_002982135.1_ASM298213v1	CP019981	Pediococcus inopinatus strain DSM 20285 chromosome, complete genome	9	1764122-1764259	9	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	Orphan	GCCAAATAGTCTTAATCTACGAGGAGGGCCAGTCCGACTTA	41	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	NA,NA|114aa|down_5|CP019981.1_1768396_1768738_+	NA|251aa|up_9|CP019981.1_1752042_1752795_-	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|265aa|up_8|CP019981.1_1752766_1753561_-	pfam03609, EII-Sor, PTS system sorbose-specific iic component	NA|159aa|up_7|CP019981.1_1753576_1754053_-	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component	NA|410aa|up_6|CP019981.1_1754402_1755632_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|173aa|up_5|CP019981.1_1755771_1756290_-	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component	NA|918aa|up_4|CP019981.1_1756376_1759130_-	COG1221, PspF, Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]	NA|369aa|up_3|CP019981.1_1759510_1760617_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|325aa|up_2|CP019981.1_1760637_1761612_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|308aa|up_1|CP019981.1_1761628_1762552_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|490aa|up_0|CP019981.1_1762575_1764045_+	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|201aa|down_0|CP019981.1_1764351_1764954_+	COG5578, COG5578, Predicted integral membrane protein [Function unknown]	NA|174aa|down_1|CP019981.1_1765006_1765528_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|372aa|down_2|CP019981.1_1765643_1766759_-	PRK06233, PRK06233, vitamin B12 independent methionine synthase	NA|199aa|down_3|CP019981.1_1767158_1767755_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|137aa|down_4|CP019981.1_1767884_1768295_+	PRK09218, PRK09218, peptide deformylase; Validated	NA|114aa|down_5|CP019981.1_1768396_1768738_+	NA	NA|145aa|down_6|CP019981.1_1768980_1769415_+	pfam04138, GtrA, GtrA-like protein	NA|258aa|down_7|CP019981.1_1769489_1770263_-	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein	NA|302aa|down_8|CP019981.1_1770276_1771182_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|274aa|down_9|CP019981.1_1771323_1772145_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface
GCA_002982135.1_ASM298213v1	CP019981	Pediococcus inopinatus strain DSM 20285 chromosome, complete genome	10	1854449-1854571	2	PILER-CR	no		csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	Orphan	CTGAGACTTAGGACAGCTCGACAAA	25	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,WYL,DinG,csn2,cas2,cas1,cas9	NA|72aa|up_2|CP019981.1_1853201_1853417_-,NA|69aa|up_0|CP019981.1_1853930_1854137_-,NA|216aa|down_7|CP019981.1_1864323_1864971_-,NA|201aa|down_8|CP019981.1_1865116_1865719_-,NA|194aa|down_9|CP019981.1_1865727_1866309_-	NA|109aa|up_9|CP019981.1_1844697_1845024_+	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator	NA|219aa|up_8|CP019981.1_1845020_1845677_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|473aa|up_7|CP019981.1_1846081_1847500_+	pfam03577, Peptidase_C69, Peptidase family C69	NA|545aa|up_6|CP019981.1_1847553_1849188_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|231aa|up_5|CP019981.1_1849706_1850399_-	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|374aa|up_4|CP019981.1_1850415_1851537_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|408aa|up_3|CP019981.1_1851915_1853139_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|72aa|up_2|CP019981.1_1853201_1853417_-	NA	NA|78aa|up_1|CP019981.1_1853637_1853871_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|69aa|up_0|CP019981.1_1853930_1854137_-	NA	NA|566aa|down_0|CP019981.1_1855504_1857202_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|186aa|down_1|CP019981.1_1857206_1857764_-	PRK13661, PRK13661, ECF-type riboflavin transporter substrate-binding protein	NA|414aa|down_2|CP019981.1_1857996_1859238_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|502aa|down_3|CP019981.1_1859619_1861125_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|165aa|down_4|CP019981.1_1861142_1861637_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|239aa|down_5|CP019981.1_1861869_1862586_+	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|551aa|down_6|CP019981.1_1862599_1864252_+	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|216aa|down_7|CP019981.1_1864323_1864971_-	NA	NA|201aa|down_8|CP019981.1_1865116_1865719_-	NA	NA|194aa|down_9|CP019981.1_1865727_1866309_-	NA
