The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027402	Enterococcus faecium strain FDAARGOS_323 chromosome, complete genome	2550968	112332	120804	2550968		Streptococcus_phage(66.67%)	9	NA	NA
AVL44019.1|112332_112977_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
AVL44020.1|112991_113321_+	hypothetical protein	NA	NA	NA	NA	NA
AVL44021.1|113334_114273_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	34.4	3.3e-35
AVL44022.1|114308_115133_+	signal peptidase	NA	NA	NA	NA	NA
AVL44023.1|115125_115473_+	DUF972 domain-containing protein	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
AVL44024.1|115541_116414_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	3.1e-88
AVL44025.1|116522_117644_+	DNA polymerase IV	NA	NA	NA	NA	NA
AVL44026.1|117697_118300_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.6	1.7e-53
AVL44027.1|118614_120804_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.8e-286
>prophage 2
CP027402	Enterococcus faecium strain FDAARGOS_323 chromosome, complete genome	2550968	502072	511133	2550968		Gordonia_phage(16.67%)	9	NA	NA
AVL44382.1|502072_503368_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	4.5e-19
AVL44383.1|503547_503925_-	hypothetical protein	NA	NA	NA	NA	NA
AVL44384.1|504180_504909_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.4	4.6e-45
AVL44385.1|504908_505163_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AVL44386.1|505164_505836_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AVL44387.1|505836_508059_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	3.2e-150
AVL44388.1|508043_509483_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	5.3e-53
AVL46264.1|509514_510558_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.7	2.7e-62
AVL44389.1|510554_511133_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
>prophage 3
CP027402	Enterococcus faecium strain FDAARGOS_323 chromosome, complete genome	2550968	960751	1074784	2550968	transposase,tail,integrase,portal,head,protease,tRNA,terminase,capsid,holin	Enterococcus_phage(26.92%)	122	1014986:1015009	1053571:1053594
AVL44795.1|960751_961675_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
AVL44796.1|962043_964407_-	phosphoketolase family protein	NA	NA	NA	NA	NA
AVL44797.1|964854_965028_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AVL44798.1|965184_965532_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
AVL44799.1|965558_967865_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.7	3.6e-19
AVL44800.1|967877_968189_-	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AVL44801.1|968185_968479_-	DUF448 domain-containing protein	NA	NA	NA	NA	NA
AVL44802.1|968500_969676_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
AVL44803.1|969698_970172_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
AVL44804.1|970315_974668_-	PolC-type DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	41.4	3.9e-22
AVL44805.1|974879_976589_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
AVL44806.1|976656_977925_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AVL44807.1|978085_978886_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AVL44808.1|978882_979695_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	46.8	2.0e-25
AVL44809.1|979889_980447_-	ribosome recycling factor	NA	NA	NA	NA	NA
AVL44810.1|980449_981172_-	UMP kinase	NA	NA	NA	NA	NA
AVL44811.1|981307_982189_-	elongation factor Ts	NA	NA	NA	NA	NA
AVL44812.1|982287_983070_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
AVL44813.1|983428_983908_+	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
AVL46276.1|984124_985216_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA	NA
AVL44814.1|986337_988029_-|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.8	1.3e-74
AVL44815.1|988448_989396_-	carbamate kinase	NA	NA	NA	NA	NA
AVL44816.1|989510_990530_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
AVL44817.1|990620_991850_-	arginine deiminase	NA	NA	NA	NA	NA
AVL44818.1|992310_993012_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
AVL44819.1|993620_994637_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.4	5.4e-60
AVL44820.1|994633_995098_-	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA	NA
AVL44821.1|995104_995647_-	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA	NA
AVL46277.1|995630_996455_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
AVL44822.1|996543_997524_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.9	5.8e-19
AVL44823.1|997547_999032_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AVL44824.1|999043_1000033_-	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	36.8	2.1e-48
AVL44825.1|1000281_1000449_+	DUF3042 domain-containing protein	NA	NA	NA	NA	NA
AVL44826.1|1000510_1002322_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AVL44827.1|1002318_1002684_-	DUF488 domain-containing protein	NA	NA	NA	NA	NA
AVL44828.1|1002846_1003242_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AVL44829.1|1003259_1004222_-	glucokinase	NA	NA	NA	NA	NA
AVL44830.1|1004221_1004434_-	DUF910 domain-containing protein	NA	NA	NA	NA	NA
AVL44831.1|1004454_1005153_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AVL44832.1|1005172_1005715_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AVL44833.1|1005846_1006851_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AVL44834.1|1006847_1007837_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AVL44835.1|1007833_1008640_-	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	32.1	1.0e-13
AVL44836.1|1008805_1009762_+	ferrichrome ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVL44837.1|1009838_1010357_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	39.1	7.1e-24
AVL44838.1|1010444_1010594_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AVL44839.1|1010821_1011268_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
AVL44840.1|1011462_1013358_-	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y2L7	Organic_Lake_phycodnavirus	26.2	6.0e-20
AVL44841.1|1013682_1014657_-	linear amide C-N hydrolase	NA	M1H001	Paramecium_bursaria_Chlorella_virus	29.7	6.6e-23
1014986:1015009	attL	TGATATAAGGAAGGTACAGGATTT	NA	NA	NA	NA
AVL44842.1|1015216_1016236_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	5.4e-60
AVL44843.1|1016246_1016444_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	85.9	7.8e-24
AVL44844.1|1016459_1016702_-|holin	holin	holin	D2J075	Enterococcus_phage	68.4	2.1e-23
AVL44845.1|1016771_1017581_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	23.1	1.7e-08
AVL44846.1|1017623_1018346_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	30.6	3.9e-12
AVL44847.1|1018345_1020622_-	hypothetical protein	NA	A0A096XSZ6	Enterococcus_phage	33.7	1.1e-60
AVL44848.1|1020645_1022937_-	hypothetical protein	NA	A0A1D3SNL1	Enterococcus_phage	30.2	2.3e-90
AVL44849.1|1022946_1023684_-|tail	phage tail protein	tail	NA	NA	NA	NA
AVL44850.1|1023720_1024674_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AVL44851.1|1024801_1028221_-|tail	phage tail tape measure protein	tail	A0A1D3SNL5	Enterococcus_phage	41.5	8.7e-78
AVL44852.1|1028237_1028420_-	hypothetical protein	NA	NA	NA	NA	NA
AVL44853.1|1028422_1028785_-	hypothetical protein	NA	NA	NA	NA	NA
AVL44854.1|1028806_1029412_-|tail	phage tail protein	tail	Q8W5Z9	Listeria_phage	41.2	6.7e-34
AVL44855.1|1029423_1029828_-	hypothetical protein	NA	R4IBU7	Listeria_phage	29.5	6.1e-07
AVL44856.1|1029820_1030222_-	hypothetical protein	NA	A0A1B1P759	Bacillus_phage	34.1	3.0e-14
AVL44857.1|1030211_1030565_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
AVL44858.1|1030554_1030866_-	hypothetical protein	NA	A0A1B1P751	Bacillus_phage	43.5	1.8e-11
AVL44859.1|1030862_1031738_-	hypothetical protein	NA	D2IYX3	Enterococcus_phage	73.9	2.5e-130
AVL44860.1|1031747_1032908_-|capsid	phage major capsid protein	capsid	A0A1B1P752	Bacillus_phage	50.4	2.7e-100
AVL44861.1|1032907_1033594_-|protease	Clp protease ClpP	protease	A0A2I6PDD0	Staphylococcus_phage	40.2	6.1e-31
AVL44862.1|1033556_1034735_-|portal	phage portal protein	portal	A0A1B1P754	Bacillus_phage	40.2	1.9e-80
AVL44863.1|1034754_1036449_-|terminase	terminase large subunit	terminase	A0A1B1P766	Bacillus_phage	49.6	3.0e-148
AVL44864.1|1036426_1036741_-|terminase	terminase	terminase	A0A1S7FYW6	Listeria_phage	37.9	3.3e-08
AVL44865.1|1036842_1037124_-	hypothetical protein	NA	NA	NA	NA	NA
AVL44866.1|1037128_1037473_-	HNH endonuclease	NA	A0A1B1P757	Bacillus_phage	58.1	1.0e-26
AVL44867.1|1037975_1038200_+	hypothetical protein	NA	NA	NA	NA	NA
AVL44868.1|1038473_1038890_-	autolysin	NA	C9E2P5	Enterococcus_phage	67.4	1.8e-46
AVL44869.1|1038966_1039263_-	hypothetical protein	NA	NA	NA	NA	NA
AVL44870.1|1039259_1039463_-	toxin PIN	NA	NA	NA	NA	NA
AVL44871.1|1039469_1039700_-	hypothetical protein	NA	A0A0S2MYD2	Enterococcus_phage	50.7	3.0e-11
AVL44872.1|1041171_1041474_-	hypothetical protein	NA	D2IZY1	Enterococcus_phage	71.7	1.7e-33
AVL44873.1|1041598_1041913_-	hypothetical protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	37.4	1.6e-10
AVL44874.1|1041912_1042203_-	hypothetical protein	NA	D2IZR3	Enterococcus_phage	43.4	1.4e-13
AVL44875.1|1042196_1042508_-	hypothetical protein	NA	NA	NA	NA	NA
AVL44876.1|1042504_1042666_-	antitoxin	NA	NA	NA	NA	NA
AVL44877.1|1042680_1043040_-	DUF1064 domain-containing protein	NA	A0A1P8BKR1	Lactococcus_phage	48.3	1.1e-18
AVL44878.1|1043036_1043888_-	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	28.7	6.2e-25
AVL44879.1|1043904_1044744_-	phage replisome organizer	NA	J7KBV5	Streptococcus_phage	75.4	1.8e-48
AVL44880.1|1044750_1045437_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.1	4.1e-88
AVL44881.1|1045442_1046114_-	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
AVL44882.1|1046106_1046448_-	hypothetical protein	NA	NA	NA	NA	NA
AVL44883.1|1046594_1047002_+	hypothetical protein	NA	NA	NA	NA	NA
AVL44884.1|1047115_1047301_-	hypothetical protein	NA	NA	NA	NA	NA
AVL44885.1|1047380_1047725_+	hypothetical protein	NA	NA	NA	NA	NA
AVL44886.1|1047707_1047890_-	hypothetical protein	NA	NA	NA	NA	NA
AVL46278.1|1048152_1048413_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AVL44887.1|1048552_1048756_-	hypothetical protein	NA	NA	NA	NA	NA
AVL44888.1|1048770_1049547_-	phage antirepressor	NA	A0A1Q1PVU2	Staphylococcus_phage	54.5	1.9e-73
AVL44889.1|1049846_1050167_+	XRE family transcriptional regulator	NA	A0A1B0Y3N1	Lactobacillus_phage	35.1	5.0e-12
AVL44890.1|1050184_1050607_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
AVL44891.1|1050689_1051325_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	52.6	5.1e-32
AVL44892.1|1051512_1052169_-	hypothetical protein	NA	NA	NA	NA	NA
AVL44893.1|1052322_1053471_+|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	38.9	1.2e-68
AVL44894.1|1053809_1054376_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
1053571:1053594	attR	TGATATAAGGAAGGTACAGGATTT	NA	NA	NA	NA
AVL44895.1|1055928_1056279_+	hypothetical protein	NA	NA	NA	NA	NA
AVL44896.1|1056370_1056790_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AVL44897.1|1056790_1057135_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AVL44898.1|1057484_1058081_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	41.7	8.7e-34
AVL44899.1|1058204_1060004_+	glycerophosphodiester phosphodiesterase	NA	I6XE30	Staphylococcus_phage	26.5	5.3e-10
AVL46279.1|1060281_1060494_-	hypothetical protein	NA	NA	NA	NA	NA
AVL44900.1|1061350_1061737_+	DUF1093 domain-containing protein	NA	NA	NA	NA	NA
AVL44901.1|1062044_1063391_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AVL44902.1|1063502_1064852_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
AVL44903.1|1064968_1066222_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	7.7e-24
AVL44904.1|1066292_1066778_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AVL44905.1|1066800_1067559_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	36.9	8.5e-26
AVL44906.1|1067574_1068753_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	48.9	5.1e-102
AVL44907.1|1068982_1071103_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.1	2.8e-220
AVL44908.1|1071038_1071314_+	hypothetical protein	NA	NA	NA	NA	NA
AVL44909.1|1071325_1072051_+	hypothetical protein	NA	NA	NA	NA	NA
AVL44910.1|1072040_1072550_+	hypothetical protein	NA	NA	NA	NA	NA
AVL44911.1|1072619_1074068_-	sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.7e-19
AVL44912.1|1074067_1074784_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.7	1.0e-33
>prophage 4
CP027402	Enterococcus faecium strain FDAARGOS_323 chromosome, complete genome	2550968	2369008	2431329	2550968	tail,integrase,portal,head,protease,bacteriocin,terminase,capsid,holin	Enterococcus_phage(38.1%)	80	2391846:2391864	2432997:2433015
AVL46065.1|2369008_2369320_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AVL46066.1|2369423_2369570_+|bacteriocin	EntF family bacteriocin induction factor	bacteriocin	NA	NA	NA	NA
AVL46322.1|2369645_2370893_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
AVL46067.1|2370907_2371660_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AVL46068.1|2372178_2372370_-	hypothetical protein	NA	NA	NA	NA	NA
AVL46069.1|2372362_2372578_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AVL46070.1|2372596_2372833_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AVL46071.1|2373090_2375244_+	peptide ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.8	3.1e-41
AVL46323.1|2375212_2376628_+	HlyD family secretion protein	NA	NA	NA	NA	NA
AVL46072.1|2376660_2377695_+	signal peptide peptidase SppA	NA	A0A1C9LW82	Vibrio_phage	29.2	6.6e-13
AVL46073.1|2377696_2378218_+	RDD family protein	NA	NA	NA	NA	NA
AVL46074.1|2378214_2378601_+	DUF4064 domain-containing protein	NA	NA	NA	NA	NA
AVL46075.1|2379550_2380120_+	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
AVL46076.1|2380106_2380967_+	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	24.4	4.6e-12
AVL46077.1|2381156_2381861_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	41.6	5.8e-45
AVL46078.1|2381865_2383701_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	37.7	5.2e-37
AVL46079.1|2383697_2385014_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46080.1|2385014_2385884_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46081.1|2385938_2386748_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	33.6	3.1e-34
AVL46082.1|2386850_2387480_-	flavin reductase	NA	NA	NA	NA	NA
AVL46083.1|2387649_2388942_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AVL46084.1|2389017_2389680_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVL46085.1|2389904_2390189_+	co-chaperone GroES	NA	A0A221S4M3	uncultured_virus	40.2	2.0e-12
AVL46086.1|2390239_2391865_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.8	4.9e-156
2391846:2391864	attL	TGATGGGCGGTATGATGTA	NA	NA	NA	NA
AVL46087.1|2391953_2393102_-|integrase	site-specific integrase	integrase	A0A1B1IMP1	Lactococcus_phage	48.4	5.1e-91
AVL46088.1|2393196_2393898_-	hypothetical protein	NA	NA	NA	NA	NA
AVL46089.1|2394022_2394454_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
AVL46090.1|2394471_2394795_-	XRE family transcriptional regulator	NA	Q9AZJ7	Lactococcus_phage	51.9	1.2e-13
AVL46091.1|2395086_2395278_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46092.1|2395292_2396048_+	oxidoreductase	NA	A0A1S5SE89	Streptococcus_phage	70.1	1.8e-92
AVL46093.1|2396007_2396307_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46094.1|2396354_2396639_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46095.1|2396659_2396848_+	hypothetical protein	NA	D2IZW5	Enterococcus_phage	58.6	1.7e-07
AVL46096.1|2396844_2397030_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46097.1|2397172_2397514_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46098.1|2397506_2398253_+	DUF1071 domain-containing protein	NA	A0A2I7RDU5	Vibrio_phage	52.2	4.4e-43
AVL46099.1|2398258_2398945_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	70.0	6.4e-89
AVL46100.1|2398947_2399697_+	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	54.0	1.3e-31
AVL46101.1|2399708_2399978_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46102.1|2400140_2400446_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46103.1|2400439_2400730_+	hypothetical protein	NA	D2IZR3	Enterococcus_phage	43.4	1.8e-13
AVL46104.1|2400729_2401191_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46105.1|2401356_2401638_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46106.1|2401634_2402057_+	hypothetical protein	NA	Q4ZD40	Staphylococcus_phage	37.0	4.6e-13
AVL46107.1|2402049_2402553_+	DUF1642 domain-containing protein	NA	A0A0E3T929	Enterococcus_phage	60.7	5.4e-37
AVL46108.1|2402549_2402852_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46109.1|2402848_2403034_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46110.1|2403030_2403240_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46111.1|2403236_2403524_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46112.1|2403556_2403808_-	hypothetical protein	NA	NA	NA	NA	NA
AVL46113.1|2404115_2404583_+	ArpU family transcriptional regulator	NA	D7RWH7	Brochothrix_phage	28.5	3.2e-07
AVL46114.1|2405359_2405590_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46115.1|2405733_2406396_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46116.1|2406442_2407291_+|terminase	small subunit of terminase	terminase	D2IYW0	Enterococcus_phage	63.8	1.2e-84
AVL46117.1|2407277_2408522_+|terminase	PBSX family phage terminase large subunit	terminase	D2IYW1	Enterococcus_phage	81.2	4.3e-200
AVL46118.1|2408534_2410034_+|portal	phage portal protein	portal	A0A097BY86	Enterococcus_phage	78.9	2.1e-222
AVL46119.1|2410038_2410947_+|head	phage head morphogenesis protein	head	A0A1L2JXH2	Streptococcus_phage	59.1	4.8e-92
AVL46120.1|2411055_2411292_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46121.1|2411440_2412043_+	DUF4355 domain-containing protein	NA	A0A097BY91	Enterococcus_phage	52.5	1.1e-36
AVL46122.1|2412055_2412979_+|capsid	phage major capsid protein	capsid	A0A1B1V000	Enterococcus_phage	77.5	1.8e-139
AVL46123.1|2412996_2413260_+	hypothetical protein	NA	D2J062	Enterococcus_phage	72.9	5.0e-10
AVL46124.1|2413271_2413601_+	hypothetical protein	NA	A0A0S2MYD5	Enterococcus_phage	76.4	3.8e-39
AVL46125.1|2413597_2413924_+	hypothetical protein	NA	C9E2J7	Enterococcus_phage	70.2	9.2e-38
AVL46126.1|2413907_2414246_+	hypothetical protein	NA	Q77K21	Lactococcus_phage	58.9	7.3e-30
AVL46127.1|2414245_2414638_+|capsid	phage capsid protein	capsid	Q77K20	Lactococcus_phage	76.2	2.2e-49
AVL46128.1|2414648_2415161_+|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	66.3	7.4e-58
AVL46129.1|2415206_2415575_+	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	54.8	8.6e-24
AVL46130.1|2415628_2415916_+	hypothetical protein	NA	D7RWD7	Brochothrix_phage	44.3	2.4e-13
AVL46131.1|2415932_2419052_+|tail	phage tail tape measure protein	tail	Q9G097	Lactococcus_phage	79.5	1.4e-167
AVL46324.1|2419084_2419852_+|tail	phage tail protein	tail	D7RWD9	Brochothrix_phage	45.1	2.6e-59
AVL46132.1|2419848_2422680_+	peptidase M23	NA	A0A1P8BMB8	Lactococcus_phage	60.7	0.0e+00
AVL46133.1|2422654_2424439_+	hypothetical protein	NA	Q9AZX4	Lactococcus_phage	41.4	8.3e-40
AVL46134.1|2424451_2425210_+	hypothetical protein	NA	A0A067XGT4	Enterococcus_phage	32.5	1.5e-27
AVL46135.1|2425225_2427451_+	hypothetical protein	NA	A0A060AI60	Enterococcus_phage	40.2	7.4e-62
AVL46136.1|2427462_2427909_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46137.1|2427910_2428048_+	XkdX family protein	NA	NA	NA	NA	NA
AVL46138.1|2428085_2428379_+	hypothetical protein	NA	NA	NA	NA	NA
AVL46139.1|2428401_2428599_+|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	85.9	7.8e-24
AVL46140.1|2428609_2429629_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.7	1.9e-60
AVL46141.1|2429727_2431329_+	hypothetical protein	NA	A0A1S5SA14	Streptococcus_phage	41.5	1.0e-76
2432997:2433015	attR	TGATGGGCGGTATGATGTA	NA	NA	NA	NA
>prophage 1
CP027401	Enterococcus faecium strain FDAARGOS_323 plasmid unnamed, complete sequence	159454	393	64688	159454	transposase,integrase	Streptococcus_phage(58.82%)	54	28332:28355	52378:52401
AVL43773.1|393_993_+	SAM-dependent DNA methyltransferase	NA	A0A2H4PQP4	Staphylococcus_phage	41.9	7.4e-33
AVL43774.1|1920_2121_+	XRE family transcriptional regulator	NA	A0A2K5B261	Erysipelothrix_phage	55.6	1.8e-12
AVL43775.1|2169_5427_+	helicase	NA	A0A2K5B2B9	Erysipelothrix_phage	81.0	0.0e+00
AVL43776.1|5427_6150_+	DUF4391 domain-containing protein	NA	A0A2K5B2C0	Erysipelothrix_phage	50.9	1.7e-68
AVL43777.1|6177_8157_+	site-specific DNA-methyltransferase	NA	A0A2K5B2C1	Erysipelothrix_phage	42.9	1.8e-139
AVL43778.1|8177_11168_+	restriction endonuclease subunit R	NA	A0A2K5B2C2	Erysipelothrix_phage	70.6	0.0e+00
AVL43909.1|11334_11649_+	hypothetical protein	NA	NA	NA	NA	NA
AVL43779.1|12291_13454_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
AVL43780.1|13556_13817_+	hypothetical protein	NA	NA	NA	NA	NA
AVL43781.1|15069_16257_-|transposase	IS256 family transposase IS16	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
AVL43782.1|16927_17836_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
AVL43783.1|17891_18389_+	N-acetyltransferase	NA	NA	NA	NA	NA
AVL43784.1|18385_19120_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43785.1|19862_20417_+|integrase	integrase	integrase	W8CYP1	Bacillus_phage	46.1	8.6e-36
AVL43786.1|21480_22434_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.9	9.6e-35
AVL43787.1|24495_25581_-	tyrosine recombinase XerS	NA	NA	NA	NA	NA
AVL43788.1|25913_26147_+	addiction module antitoxin	NA	NA	NA	NA	NA
AVL43789.1|26143_26551_+	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A0N9SKD8	Staphylococcus_phage	39.1	2.3e-14
AVL43790.1|28208_28394_-	hypothetical protein	NA	NA	NA	NA	NA
28332:28355	attL	CAAAAAAACTGTTGCCATTCCACA	NA	NA	NA	NA
AVL43791.1|28390_28741_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43792.1|28733_30059_-	type VI secretion protein ImpB	NA	M1Q231	Streptococcus_phage	43.2	1.7e-98
AVL43793.1|32120_33338_-|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	99.8	1.1e-232
AVL43794.1|33419_33623_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
AVL43795.1|33606_33858_+	hypothetical protein	NA	NA	NA	NA	NA
AVL43796.1|34083_34314_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
AVL43797.1|34310_34733_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
AVL43910.1|34961_35033_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43798.1|35237_35591_+	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
AVL43799.1|35650_35836_-	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	67.9	3.9e-17
AVL43800.1|35936_37856_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.4	0.0e+00
AVL43801.1|37871_37958_-	tetracycline resistance protein	NA	NA	NA	NA	NA
AVL43802.1|38232_39165_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
AVL43803.1|39161_40163_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
AVL43804.1|40159_42337_-	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
AVL43805.1|42339_44787_-	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	99.4	0.0e+00
AVL43806.1|44770_45277_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
AVL43807.1|45251_45749_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
AVL43808.1|45865_46087_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
AVL43809.1|46129_47335_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
AVL43810.1|47357_47510_-	conjugal transfer protein	NA	NA	NA	NA	NA
AVL43811.1|47512_48898_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
AVL43812.1|48926_49313_-	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
AVL43813.1|49328_49643_-	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
AVL43814.1|49880_51043_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
AVL43815.1|52451_53084_-	HAD family phosphatase	NA	A0A1D8KNV9	Synechococcus_phage	28.4	7.8e-09
52378:52401	attR	TGTGGAATGGCAACAGTTTTTTTG	NA	NA	NA	NA
AVL43816.1|53096_55820_-	PRD domain-containing protein	NA	NA	NA	NA	NA
AVL43817.1|55956_56922_-	SIS domain-containing protein	NA	NA	NA	NA	NA
AVL43818.1|56975_57788_-	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
AVL43819.1|57801_58575_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AVL43820.1|58588_59059_-	PTS mannose/fructose/sorbose transporter subunit IIB	NA	NA	NA	NA	NA
AVL43821.1|59055_59472_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
AVL43822.1|59796_60639_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AVL43823.1|60942_62457_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	38.3	1.1e-45
AVL43824.1|63482_64688_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	30.7	2.5e-35
>prophage 2
CP027401	Enterococcus faecium strain FDAARGOS_323 plasmid unnamed, complete sequence	159454	69524	135290	159454	holin,transposase	Streptococcus_phage(20.0%)	60	NA	NA
AVL43832.1|69524_69647_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AVL43833.1|69805_70063_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43834.1|70084_70570_-	single-stranded DNA-binding protein	NA	Q938M7	Temperate_phage	59.9	2.9e-43
AVL43835.1|70572_71472_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
AVL43836.1|71484_72081_-	transcriptional regulator	NA	NA	NA	NA	NA
AVL43837.1|72325_74530_-	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	51.5	3.2e-118
AVL43838.1|74540_76010_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43911.1|76070_77882_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43839.1|78454_78649_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43840.1|78789_79125_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43841.1|79136_80729_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43842.1|80747_81170_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43843.1|81403_82363_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.5	5.0e-31
AVL43844.1|82326_82533_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43845.1|83040_84072_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43846.1|84091_84322_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43847.1|84344_85151_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43848.1|85161_85806_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43849.1|85821_87027_-	peptidase M23	NA	Q6SEC2	Lactobacillus_prophage	41.8	4.8e-31
AVL43850.1|87026_89051_-	ATPase	NA	NA	NA	NA	NA
AVL43851.1|89213_89807_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43852.1|89807_90140_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43853.1|90191_92570_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43854.1|92566_95176_-	type IV secretory protein	NA	NA	NA	NA	NA
AVL43855.1|95175_97251_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43856.1|97320_97623_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43857.1|97640_97883_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43858.1|97879_98344_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43859.1|98370_100461_-	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
AVL43860.1|100457_100718_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43861.1|100730_101486_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43862.1|101501_102254_-	class C sortase	NA	NA	NA	NA	NA
AVL43863.1|102268_104245_-	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
AVL43864.1|104297_104969_-	class A sortase	NA	NA	NA	NA	NA
AVL43865.1|105325_105928_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43866.1|106054_106294_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43867.1|106359_106599_-	hypothetical protein	NA	NA	NA	NA	NA
AVL43868.1|106765_106948_-	hypothetical protein	NA	F0PIH7	Enterococcus_phage	57.9	7.7e-10
AVL43869.1|107725_108058_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
AVL43870.1|108897_109938_-	replication protein RepA	NA	NA	NA	NA	NA
AVL43871.1|110816_111995_-|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.6	3.0e-30
AVL43872.1|113470_113725_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
AVL43873.1|113725_114043_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AVL43874.1|114751_115705_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.9	9.6e-35
AVL43875.1|116514_117483_+	SIS domain-containing protein	NA	NA	NA	NA	NA
AVL43876.1|117493_118309_+	fructoselysine 6-kinase	NA	NA	NA	NA	NA
AVL43877.1|118376_119087_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AVL43878.1|119122_120364_+	hydrolase	NA	NA	NA	NA	NA
AVL43879.1|120421_121609_-|transposase	IS256 family transposase IS16	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
AVL43880.1|122143_123544_+	putative basic amino acid antiporter YfcC	NA	NA	NA	NA	NA
AVL43881.1|124752_125082_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
AVL43882.1|125071_125359_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AVL43883.1|125644_126502_+	ParA family protein	NA	F0PIG8	Enterococcus_phage	30.7	8.1e-33
AVL43884.1|126502_127051_+	hypothetical protein	NA	NA	NA	NA	NA
AVL43885.1|127310_127772_+	thermophilic serine proteinase	NA	NA	NA	NA	NA
AVL43886.1|127988_128939_-	transcriptional regulator	NA	NA	NA	NA	NA
AVL43887.1|129540_131385_+	PTS beta-glucoside transporter subunit EIIBCA	NA	NA	NA	NA	NA
AVL43888.1|131440_132907_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA	NA
AVL43889.1|132943_133786_+	transcription antiterminator BglG	NA	NA	NA	NA	NA
AVL43890.1|133997_135290_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
