assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002984035.1_ASM298403v1	CP027412	Salmonella enterica strain FDAARGOS_319 chromosome, complete genome	1	3871758-3871867	1	CRISPRCasFinder	no		cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TTAAAAAAAGGTGGTACAGGGTGGGACA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|198aa|up_4|CP027412.1_3865630_3866224_+,NA|276aa|up_2|CP027412.1_3868141_3868969_-,NA	NA|161aa|up_9|CP027412.1_3846343_3846826_+	PRK05422, smpB, SsrA-binding protein SmpB	NA|3825aa|up_8|CP027412.1_3847441_3858916_+	pfam17936, Big_6, Bacterial Ig domain	NA|470aa|up_7|CP027412.1_3858980_3860390_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|727aa|up_6|CP027412.1_3860386_3862567_+	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|388aa|up_5|CP027412.1_3862574_3863738_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|198aa|up_4|CP027412.1_3865630_3866224_+	NA	NA|398aa|up_3|CP027412.1_3866613_3867807_+	pfam02810, SEC-C, SEC-C motif	NA|276aa|up_2|CP027412.1_3868141_3868969_-	NA	NA|72aa|up_1|CP027412.1_3869419_3869635_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|690aa|up_0|CP027412.1_3869670_3871740_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|428aa|down_0|CP027412.1_3872242_3873526_+	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|273aa|down_1|CP027412.1_3873570_3874389_+	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|119aa|down_2|CP027412.1_3874541_3874898_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|95aa|down_3|CP027412.1_3874992_3875277_+	COG3423, Nlp, Predicted transcriptional regulator [Transcription]	NA|174aa|down_4|CP027412.1_3875389_3875911_+	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|125aa|down_5|CP027412.1_3875907_3876282_+	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|327aa|down_6|CP027412.1_3876278_3877259_+	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|338aa|down_7|CP027412.1_3877269_3878283_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|401aa|down_8|CP027412.1_3878577_3879780_+	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|212aa|down_9|CP027412.1_3879853_3880489_-	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase
GCA_002984035.1_ASM298403v1	CP027412	Salmonella enterica strain FDAARGOS_319 chromosome, complete genome	2	4062880-4064542	2,1,1,2,3	CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E	25,26,26,26,25	26	TypeI-E	cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|81aa|down_9|CP027412.1_4074576_4074819_+	NA|254aa|up_9|CP027412.1_4054746_4055508_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|CP027412.1_4055488_4056538_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|CP027412.1_4056534_4057014_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP027412.1_4057013_4057724_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP027412.1_4057742_4058054_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|CP027412.1_4058244_4058601_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP027412.1_4058618_4059224_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|CP027412.1_4059210_4060650_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP027412.1_4060659_4061568_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|CP027412.1_4061818_4062865_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|CP027412.1_4064638_4064932_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|CP027412.1_4064931_4065852_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|CP027412.1_4065848_4066499_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|CP027412.1_4066480_4067227_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|CP027412.1_4067237_4068296_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|CP027412.1_4068309_4068870_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|CP027412.1_4068866_4070423_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|CP027412.1_4070434_4073098_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|CP027412.1_4073541_4074495_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|81aa|down_9|CP027412.1_4074576_4074819_+	NA
GCA_002984035.1_ASM298403v1	CP027412	Salmonella enterica strain FDAARGOS_319 chromosome, complete genome	3	4080799-4081499	4,3,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GCGCTGGAACGGTTTATCCCCGCTGGCGCGGGGAACACT	29,29,29,39	0	0	NA	NA	I-E:I-E:I-E:I-E	11,11,8,8	11	TypeI-E	cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|81aa|up_5|CP027412.1_4074576_4074819_+,NA|57aa|up_1|CP027412.1_4079353_4079524_-,NA	cse2gr11|187aa|up_9|CP027412.1_4068309_4068870_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_8|CP027412.1_4068866_4070423_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_7|CP027412.1_4070434_4073098_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_6|CP027412.1_4073541_4074495_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|81aa|up_5|CP027412.1_4074576_4074819_+	NA	NA|245aa|up_4|CP027412.1_4074707_4075442_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|CP027412.1_4075517_4077230_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|CP027412.1_4077229_4079029_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|57aa|up_1|CP027412.1_4079353_4079524_-	NA	NA|121aa|up_0|CP027412.1_4079452_4079815_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|224aa|down_0|CP027412.1_4081794_4082466_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|CP027412.1_4082601_4083900_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|CP027412.1_4083982_4085620_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|CP027412.1_4085847_4086648_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|CP027412.1_4087252_4087840_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|900aa|down_5|CP027412.1_4087919_4090619_+	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|258aa|down_6|CP027412.1_4090631_4091405_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_7|CP027412.1_4091424_4091931_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_8|CP027412.1_4091945_4092416_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_9|CP027412.1_4092412_4092949_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional
