assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003006435.1_ASM300643v1	CP027562	Stenotrophomonas maltophilia strain SJTH1 chromosome, complete genome	1	1025237-1025330	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,PD-DExK,Cas9_archaeal,DinG	Orphan	GGTGGGTGCCGACCTTGGTCGGCA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,PD-DExK,Cas9_archaeal,DinG	NA,NA|188aa|down_4|CP027562.1_1028766_1029330_-,NA|136aa|down_5|CP027562.1_1029382_1029790_-,NA|141aa|down_7|CP027562.1_1030784_1031207_+	NA|190aa|up_9|CP027562.1_1016522_1017092_-	PRK00884, PRK00884, Maf-like protein; Reviewed	NA|170aa|up_8|CP027562.1_1017205_1017715_+	PRK11193, PRK11193, 23S rRNA accumulation protein YceD	NA|65aa|up_7|CP027562.1_1017822_1018017_+	PRK01110, rpmF, 50S ribosomal protein L32; Validated	NA|326aa|up_6|CP027562.1_1018108_1019086_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|261aa|up_5|CP027562.1_1019163_1019946_+	COG3642, COG3642, Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]	NA|315aa|up_4|CP027562.1_1020113_1021058_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|248aa|up_3|CP027562.1_1021140_1021884_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|80aa|up_2|CP027562.1_1022036_1022276_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|421aa|up_1|CP027562.1_1022419_1023682_+	PRK07314, PRK07314, beta-ketoacyl-ACP synthase II	NA|455aa|up_0|CP027562.1_1023837_1025202_+	PRK09070, PRK09070, aminodeoxychorismate synthase component I	NA|354aa|down_0|CP027562.1_1025409_1026471_+	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism]	NA|222aa|down_1|CP027562.1_1026467_1027133_+	PRK00698, tmk, thymidylate kinase; Validated	NA|319aa|down_2|CP027562.1_1027129_1028086_+	PRK08769, PRK08769, DNA polymerase III subunit delta'; Validated	NA|118aa|down_3|CP027562.1_1028082_1028436_+	COG3215, PilZ, Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]	NA|188aa|down_4|CP027562.1_1028766_1029330_-	NA	NA|136aa|down_5|CP027562.1_1029382_1029790_-	NA	NA|127aa|down_6|CP027562.1_1030356_1030737_+	pfam14552, Tautomerase_2, Tautomerase enzyme	NA|141aa|down_7|CP027562.1_1030784_1031207_+	NA	NA|358aa|down_8|CP027562.1_1031274_1032348_-	PHA02561, D, tail protein; Provisional	NA|72aa|down_9|CP027562.1_1032338_1032554_-	COG5004, COG5004, P2-like prophage tail protein X [General function prediction only]
GCA_003006435.1_ASM300643v1	CP027562	Stenotrophomonas maltophilia strain SJTH1 chromosome, complete genome	2	1125205-1125353	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,PD-DExK,Cas9_archaeal,DinG	Orphan	GGCCACCGACACCGCGTCACGGTGCGAACCAAGGTTCGCACCCACC	46	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,PD-DExK,Cas9_archaeal,DinG	NA,NA|137aa|down_6|CP027562.1_1132898_1133309_-,NA|135aa|down_9|CP027562.1_1137390_1137795_-	NA|390aa|up_9|CP027562.1_1115707_1116877_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|236aa|up_8|CP027562.1_1116876_1117584_+	PRK08727, PRK08727, DnaA regulatory inactivator Hda	NA|237aa|up_7|CP027562.1_1118115_1118826_-	cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family	NA|342aa|up_6|CP027562.1_1118822_1119848_-	COG3178, COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only]	NA|90aa|up_5|CP027562.1_1119912_1120182_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|498aa|up_4|CP027562.1_1120252_1121746_-	cd05682, M20_dipept_dapE, uncharacterized M20 dipeptidase	NA|133aa|up_3|CP027562.1_1121873_1122272_+	TIGR00426, Hypothetical_protein_ybaV_precursor	NA|362aa|up_2|CP027562.1_1122624_1123710_+	PRK06132, PRK06132, hypothetical protein; Provisional	NA|242aa|up_1|CP027562.1_1123726_1124452_+	pfam13645, YkuD_2, L,D-transpeptidase catalytic domain	NA|203aa|up_0|CP027562.1_1124486_1125095_+	pfam05962, HutD, HutD	NA|535aa|down_0|CP027562.1_1125438_1127043_-	cd06200, SiR_like1, Cytochrome p450- like alpha subunits of E	NA|324aa|down_1|CP027562.1_1127039_1128011_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|268aa|down_2|CP027562.1_1128063_1128867_-	pfam10670, DUF4198, Domain of unknown function (DUF4198)	NA|173aa|down_3|CP027562.1_1128942_1129461_-	COG3656, COG3656, Predicted periplasmic protein [Function unknown]	NA|213aa|down_4|CP027562.1_1129487_1130126_-	pfam16357, PepSY_TM_like_2, Putative PepSY_TM-like	NA|807aa|down_5|CP027562.1_1130331_1132752_-	COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]	NA|137aa|down_6|CP027562.1_1132898_1133309_-	NA	NA|226aa|down_7|CP027562.1_1133473_1134151_-	PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional	NA|763aa|down_8|CP027562.1_1134950_1137239_-	COG4774, Fiu, Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]	NA|135aa|down_9|CP027562.1_1137390_1137795_-	NA
GCA_003006435.1_ASM300643v1	CP027562	Stenotrophomonas maltophilia strain SJTH1 chromosome, complete genome	3	1959128-1959550	1	CRT	no		cas3,csa3,DEDDh,WYL,PD-DExK,Cas9_archaeal,DinG	Orphan	GTGCCAACCNNGGTTGGCAC	20	0	0	NA	NA	NA	6	6	Orphan	cas3,csa3,DEDDh,WYL,PD-DExK,Cas9_archaeal,DinG	NA|261aa|up_5|CP027562.1_1952266_1953049_-,NA|195aa|down_1|CP027562.1_1961127_1961712_+,NA|127aa|down_7|CP027562.1_1968808_1969189_-,NA|219aa|down_8|CP027562.1_1969444_1970101_+,NA|119aa|down_9|CP027562.1_1970359_1970716_-	NA|291aa|up_9|CP027562.1_1947928_1948801_+	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|213aa|up_8|CP027562.1_1948866_1949505_+	COG2976, COG2976, Uncharacterized protein conserved in bacteria [Function unknown]	NA|403aa|up_7|CP027562.1_1949504_1950713_+	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL	NA|466aa|up_6|CP027562.1_1950730_1952128_+	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|261aa|up_5|CP027562.1_1952266_1953049_-	NA	NA|212aa|up_4|CP027562.1_1953143_1953779_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|272aa|up_3|CP027562.1_1953853_1954669_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|379aa|up_2|CP027562.1_1954758_1955895_+	PRK08762, PRK08762, molybdopterin-synthase adenylyltransferase MoeB	NA|611aa|up_1|CP027562.1_1956112_1957945_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|293aa|up_0|CP027562.1_1958225_1959104_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|486aa|down_0|CP027562.1_1959670_1961128_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|195aa|down_1|CP027562.1_1961127_1961712_+	NA	NA|522aa|down_2|CP027562.1_1961708_1963274_+	PRK00074, guaA, GMP synthase; Reviewed	NA|399aa|down_3|CP027562.1_1963557_1964754_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|101aa|down_4|CP027562.1_1964815_1965118_-	pfam01381, HTH_3, Helix-turn-helix	NA|430aa|down_5|CP027562.1_1965198_1966488_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|758aa|down_6|CP027562.1_1966484_1968758_+	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	NA|127aa|down_7|CP027562.1_1968808_1969189_-	NA	NA|219aa|down_8|CP027562.1_1969444_1970101_+	NA	NA|119aa|down_9|CP027562.1_1970359_1970716_-	NA
GCA_003006435.1_ASM300643v1	CP027562	Stenotrophomonas maltophilia strain SJTH1 chromosome, complete genome	4	2730249-2730400	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,PD-DExK,Cas9_archaeal,DinG	Orphan	ACGGCCATCCAGACATTCAGTGGTAGAGCCACGCCATGCGTGGCTGC	47	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,PD-DExK,Cas9_archaeal,DinG	NA|122aa|up_1|CP027562.1_2729256_2729622_-,NA|135aa|down_5|CP027562.1_2734603_2735008_+,NA|110aa|down_6|CP027562.1_2735001_2735331_-,NA|126aa|down_7|CP027562.1_2735903_2736281_+,NA|167aa|down_8|CP027562.1_2736488_2736989_+,NA|272aa|down_9|CP027562.1_2736985_2737801_+	NA|405aa|up_9|CP027562.1_2717329_2718544_-	PRK09249, PRK09249, coproporphyrinogen dehydrogenase	NA|443aa|up_8|CP027562.1_2718694_2720023_-	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|300aa|up_7|CP027562.1_2720046_2720946_-	TIGR02933, Putative_peptidyl-prolyl_cis-trans_isomerase_NifM, nitrogen fixation protein NifM	NA|236aa|up_6|CP027562.1_2720949_2721657_-	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|227aa|up_5|CP027562.1_2721653_2722334_-	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|515aa|up_4|CP027562.1_2722333_2723878_-	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|1248aa|up_3|CP027562.1_2723877_2727621_-	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|473aa|up_2|CP027562.1_2727693_2729112_-	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|122aa|up_1|CP027562.1_2729256_2729622_-	NA	NA|181aa|up_0|CP027562.1_2729618_2730161_-	cd02503, MobA, MobA catalyzes the formation of molybdopterin guanine dinucleotide	NA|167aa|down_0|CP027562.1_2730407_2730908_-	cd00756, MoaE, MoaE family	NA|87aa|down_1|CP027562.1_2730911_2731172_-	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism]	NA|418aa|down_2|CP027562.1_2731171_2732425_-	cd00887, MoeA, MoeA family	NA|333aa|down_3|CP027562.1_2732421_2733420_-	PRK03604, moaC, bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional	NA|327aa|down_4|CP027562.1_2733428_2734409_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|135aa|down_5|CP027562.1_2734603_2735008_+	NA	NA|110aa|down_6|CP027562.1_2735001_2735331_-	NA	NA|126aa|down_7|CP027562.1_2735903_2736281_+	NA	NA|167aa|down_8|CP027562.1_2736488_2736989_+	NA	NA|272aa|down_9|CP027562.1_2736985_2737801_+	NA
GCA_003006435.1_ASM300643v1	CP027562	Stenotrophomonas maltophilia strain SJTH1 chromosome, complete genome	7	3996199-3996313	6	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,WYL,PD-DExK,Cas9_archaeal,DinG	Unclear	AGCGTGCCAACCAAGGTTGGCACCTACC	28	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,DEDDh,WYL,PD-DExK,Cas9_archaeal,DinG	NA|215aa|up_8|CP027562.1_3981123_3981768_+,NA|248aa|up_7|CP027562.1_3981923_3982667_-,NA	NA|808aa|up_9|CP027562.1_3978591_3981015_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|215aa|up_8|CP027562.1_3981123_3981768_+	NA	NA|248aa|up_7|CP027562.1_3981923_3982667_-	NA	NA|2022aa|up_6|CP027562.1_3982736_3988802_-	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll	NA|236aa|up_5|CP027562.1_3988861_3989569_-	PRK15308, PRK15308, fimbrial protein TcfA	NA|378aa|up_4|CP027562.1_3989587_3990721_-	pfam07434, CblD, CblD like pilus biogenesis initiator	NA|911aa|up_3|CP027562.1_3990717_3993450_-	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional	NA|170aa|up_2|CP027562.1_3993502_3994012_-	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit	NA|121aa|up_1|CP027562.1_3994350_3994713_-	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown]	NA|358aa|up_0|CP027562.1_3995013_3996087_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|426aa|down_0|CP027562.1_3996378_3997656_-	PRK05614, gltA, citrate synthase	NA|81aa|down_1|CP027562.1_3997952_3998195_-	PRK01678, rpmE2, type B 50S ribosomal protein L31	NA|313aa|down_2|CP027562.1_3998283_3999222_-	cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans	cas3|704aa|down_3|CP027562.1_3999686_4001798_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|129aa|down_4|CP027562.1_4001805_4002192_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|721aa|down_5|CP027562.1_4002425_4004588_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|100aa|down_6|CP027562.1_4004694_4004994_-	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|222aa|down_7|CP027562.1_4005104_4005770_-	PRK00300, gmk, guanylate kinase; Provisional	NA|197aa|down_8|CP027562.1_4006060_4006651_+	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit	NA|822aa|down_9|CP027562.1_4006663_4009129_+	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit
GCA_003006435.1_ASM300643v1	CP027562	Stenotrophomonas maltophilia strain SJTH1 chromosome, complete genome	8	4089718-4089814	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,PD-DExK,Cas9_archaeal,DinG	Orphan	GCAGTAGATCCACGCCATGCGTGGATG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,PD-DExK,Cas9_archaeal,DinG	NA,NA	NA|325aa|up_9|CP027562.1_4077989_4078964_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|579aa|up_8|CP027562.1_4079002_4080739_+	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed	NA|84aa|up_7|CP027562.1_4080722_4080974_+	COG3978, COG3978, Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]	NA|364aa|up_6|CP027562.1_4081070_4082162_+	PRK08813, PRK08813, threonine dehydratase; Provisional	NA|529aa|up_5|CP027562.1_4082158_4083745_+	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	NA|260aa|up_4|CP027562.1_4083755_4084535_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|473aa|up_3|CP027562.1_4084595_4086014_+	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|193aa|up_2|CP027562.1_4086013_4086592_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|354aa|up_1|CP027562.1_4086581_4087643_+	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|258aa|up_0|CP027562.1_4087927_4088701_-	PRK12744, PRK12744, SDR family oxidoreductase	NA|1054aa|down_0|CP027562.1_4089888_4093050_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|376aa|down_1|CP027562.1_4093053_4094181_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|227aa|down_2|CP027562.1_4094304_4094985_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|216aa|down_3|CP027562.1_4095121_4095769_+	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|453aa|down_4|CP027562.1_4095785_4097144_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|406aa|down_5|CP027562.1_4097212_4098430_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|433aa|down_6|CP027562.1_4098645_4099944_-	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed	NA|306aa|down_7|CP027562.1_4100004_4100922_+	PRK08733, PRK08733, LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase	NA|150aa|down_8|CP027562.1_4100964_4101414_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|444aa|down_9|CP027562.1_4101617_4102949_-	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]
