The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028094	Synechocystis sp. IPPAS B-1465 chromosome, complete genome	3574310	2467246	2535794	3574310	tRNA,protease,transposase	Synechococcus_phage(16.67%)	54	NA	NA
AVP90247.1|2467246_2469712_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.3	6.4e-131
AVP91343.1|2470084_2471266_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AVP90248.1|2471430_2472510_-	fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
AVP90249.1|2472793_2474095_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
AVP90250.1|2474484_2475636_-	murein transglycosylase	NA	NA	NA	NA	NA
AVP90251.1|2476034_2476688_+	Sua5/YciO/YrdC/YwlC family protein	NA	NA	NA	NA	NA
AVP90252.1|2476859_2477621_+	nucleotidyltransferase	NA	NA	NA	NA	NA
AVP90253.1|2477692_2478976_+|protease	carboxyl-terminal processing protease	protease	A0A0R6PIZ1	Moraxella_phage	29.7	1.3e-23
AVP90254.1|2479253_2480666_+	ribulose bisphosphate carboxylase large chain	NA	NA	NA	NA	NA
AVP90255.1|2480867_2481284_+	RbcX chaperonin protein	NA	NA	NA	NA	NA
AVP90256.1|2481316_2481658_+	ribulose bisphosphate carboxylase small subunit	NA	NA	NA	NA	NA
AVP90257.1|2482200_2482728_+	DUF4330 domain-containing protein	NA	NA	NA	NA	NA
AVP91344.1|2482823_2483528_+	MgtC/SapB family protein	NA	NA	NA	NA	NA
AVP90258.1|2483582_2484368_-|transposase	IS5/IS1182 family transposase IS5Sb	transposase	NA	NA	NA	NA
AVP90259.1|2484482_2485667_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AVP90260.1|2485729_2486023_-	Ferredoxin-1	NA	A0A1D8KP97	Synechococcus_phage	75.8	5.0e-35
AVP90261.1|2486485_2487034_+	hypothetical protein	NA	NA	NA	NA	NA
AVP90262.1|2487446_2488763_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AVP91345.1|2488867_2490268_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AVP90263.1|2490257_2490458_+	hypothetical protein	NA	NA	NA	NA	NA
AVP90264.1|2491165_2493844_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
AVP90265.1|2493872_2494382_-	hypothetical protein	NA	NA	NA	NA	NA
AVP90266.1|2494417_2494993_-	Uma2 family endonuclease	NA	NA	NA	NA	NA
AVP90267.1|2495044_2496229_-	pyridoxal phosphate-dependent aminotransferase	NA	A0A0H3TLT9	Faustovirus	28.6	9.5e-08
AVP90268.1|2496332_2498378_-	AarF/ABC1/UbiB kinase family protein	NA	E5EQY1	Bathycoccus_sp._RCC1105_virus	28.2	8.7e-41
AVP90269.1|2498565_2501061_+	DNA helicase RecG	NA	NA	NA	NA	NA
AVP90270.1|2501161_2501995_+	signal peptide peptidase SppA	NA	A0A1V0DX33	Synechococcus_virus	26.8	2.1e-09
AVP90271.1|2502060_2504718_-	penicillin-binding protein	NA	NA	NA	NA	NA
AVP90272.1|2505007_2505223_-	hypothetical protein	NA	NA	NA	NA	NA
AVP90273.1|2505254_2506883_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	32.1	1.8e-20
AVP90274.1|2506970_2508245_+	DNA cytosine methyltransferase	NA	A0A191SB20	Nostoc_phage	35.1	3.9e-47
AVP90275.1|2508221_2509202_-	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
AVP90276.1|2509316_2509874_+	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA	NA
AVP90277.1|2510001_2510424_+	hypothetical protein	NA	NA	NA	NA	NA
AVP90278.1|2510662_2510854_+	hypothetical protein	NA	NA	NA	NA	NA
AVP90279.1|2511112_2512135_-	long-chain acyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AVP90280.1|2512353_2513049_-	aldehyde oxygenase (deformylating)	NA	NA	NA	NA	NA
AVP90281.1|2513306_2514404_-	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	39.2	1.5e-39
AVP90282.1|2514645_2516814_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AVP90283.1|2516989_2517367_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
AVP90284.1|2517367_2517589_-	DUF2281 domain-containing protein	NA	NA	NA	NA	NA
AVP90285.1|2517653_2519024_-|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
AVP91346.1|2519160_2522697_+	hybrid sensor histidine kinase/response regulator	NA	Q8QKV7	Ectocarpus_siliculosus_virus	25.5	1.1e-19
AVP90286.1|2522669_2524577_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AVP90287.1|2524706_2525402_+	sterol desaturase family protein	NA	NA	NA	NA	NA
AVP90288.1|2526666_2527047_-	plastocyanin	NA	E3SKF1	Synechococcus_phage	50.0	3.3e-18
AVP90289.1|2527472_2528921_+	hypothetical protein	NA	NA	NA	NA	NA
AVP90290.1|2528999_2529575_-	Uma2 family endonuclease	NA	NA	NA	NA	NA
AVP90291.1|2529848_2531732_+|protease	ATP-dependent zinc metalloprotease FtsH 2	protease	G9E4U6	Ostreococcus_lucimarinus_virus	45.9	9.2e-130
AVP90292.1|2531807_2532452_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
AVP90293.1|2532505_2533270_-	twin-arginine translocase subunit TatC	NA	NA	NA	NA	NA
AVP90294.1|2533662_2534535_+	oxidoreductase	NA	NA	NA	NA	NA
AVP90295.1|2534695_2534905_+	hypothetical protein	NA	NA	NA	NA	NA
AVP90296.1|2534945_2535794_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP028094	Synechocystis sp. IPPAS B-1465 chromosome, complete genome	3574310	3039215	3099559	3574310	protease,transposase	Roseobacter_phage(16.67%)	57	NA	NA
AVP90733.1|3039215_3040007_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVP90734.1|3040150_3040438_+	hypothetical protein	NA	NA	NA	NA	NA
AVP90735.1|3040698_3041562_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AVP90736.1|3041854_3042256_+	hypothetical protein	NA	NA	NA	NA	NA
AVP90737.1|3042334_3043249_+	class D beta-lactamase	NA	NA	NA	NA	NA
AVP90738.1|3043327_3043513_-	CopG family transcriptional regulator	NA	NA	NA	NA	NA
AVP90739.1|3043629_3044454_+	methionine aminopeptidase	NA	NA	NA	NA	NA
AVP91375.1|3044895_3045270_-	PIN domain-containing protein	NA	NA	NA	NA	NA
AVP90740.1|3045259_3045496_-	prevent-host-death family protein	NA	NA	NA	NA	NA
AVP90741.1|3045673_3046693_+	NUDIX hydrolase	NA	A0A1B0V161	Roseobacter_phage	41.4	7.5e-70
AVP90742.1|3046717_3048106_+	nicotinate phosphoribosyltransferase	NA	A0A1B0V392	Roseobacter_phage	51.0	1.4e-122
AVP90743.1|3048554_3049112_+	HPP family protein	NA	NA	NA	NA	NA
AVP90744.1|3049125_3049476_+	UmuC protein	NA	A0A218MNF2	uncultured_virus	58.7	4.0e-15
AVP90745.1|3049742_3051107_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AVP90746.1|3051103_3051808_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AVP90747.1|3051926_3052574_+	cobalt transporter	NA	NA	NA	NA	NA
AVP90748.1|3052612_3055777_+	CusA/CzcA family heavy metal efflux RND transporter	NA	S5VTK5	Leptospira_phage	25.2	5.0e-80
AVP90749.1|3055712_3056540_+	hypothetical protein	NA	H9C1A7	Pectobacterium_phage	27.0	2.4e-05
AVP91376.1|3056654_3057992_+	MFS transporter	NA	NA	NA	NA	NA
AVP90750.1|3058057_3059170_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AVP90751.1|3059251_3061180_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.0	3.5e-124
AVP90752.1|3061309_3061636_-	YnfA family protein	NA	A0A2H4JF35	uncultured_Caudovirales_phage	38.2	8.7e-12
AVP90753.1|3061647_3062046_-	transcriptional regulator	NA	NA	NA	NA	NA
AVP90754.1|3062197_3064363_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.5	1.5e-112
AVP90755.1|3064389_3065766_-	GHKL domain-containing protein	NA	NA	NA	NA	NA
AVP90756.1|3065752_3066451_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AVP90757.1|3066457_3067048_-	DUF305 domain-containing protein	NA	NA	NA	NA	NA
AVP90758.1|3067236_3068017_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AVP91377.1|3068012_3068186_-	hypothetical protein	NA	NA	NA	NA	NA
AVP90759.1|3068198_3068489_-	MSMEG_0570 family nitrogen starvation response protein	NA	NA	NA	NA	NA
AVP90760.1|3068492_3069461_-	sll0787 family AIR synthase-like protein	NA	NA	NA	NA	NA
AVP90761.1|3069470_3070049_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AVP90762.1|3070002_3071091_-	MSMEG_0568 family radical SAM protein	NA	NA	NA	NA	NA
AVP90763.1|3071121_3072147_-	Nit6803 family nitriliase	NA	NA	NA	NA	NA
AVP90764.1|3072299_3072782_-	MSMEG_0572 family nitrogen starvation response protein	NA	NA	NA	NA	NA
AVP90765.1|3073246_3074497_+	MSMEG_0569 family flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AVP90766.1|3074469_3075579_-	protein kinase	NA	NA	NA	NA	NA
AVP90767.1|3075950_3076418_-	DUF1348 domain-containing protein	NA	NA	NA	NA	NA
AVP90768.1|3076386_3076689_-	hypothetical protein	NA	NA	NA	NA	NA
AVP90769.1|3076736_3079391_-	PAS domain S-box protein	NA	G3MA91	Bacillus_virus	37.6	2.5e-16
AVP90770.1|3079678_3082051_-	maltooligosyl trehalose synthase	NA	A0A1M7XV31	Cedratvirus	36.4	6.8e-29
AVP90771.1|3082104_3083022_-	D-alanyl-D-alanine carboxypeptidase family protein	NA	NA	NA	NA	NA
AVP90772.1|3082991_3084509_-	serine/threonine protein kinase	NA	M1HRT5	Paramecium_bursaria_Chlorella_virus	24.7	5.7e-13
AVP90773.1|3084586_3084964_-	DUF4189 domain-containing protein	NA	NA	NA	NA	NA
AVP90774.1|3085261_3085426_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA	NA
AVP90775.1|3085517_3089276_+	5-oxoprolinase	NA	NA	NA	NA	NA
AVP90776.1|3089259_3089724_+	CYTH domain-containing protein	NA	A0A2I7SAN4	Vibrio_phage	37.4	3.0e-18
AVP90777.1|3089933_3090356_+	hypothetical protein	NA	NA	NA	NA	NA
AVP90778.1|3090496_3091855_+	amino acid permease	NA	NA	NA	NA	NA
AVP90779.1|3092084_3092498_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
AVP90780.1|3092604_3093858_+	hypothetical protein	NA	NA	NA	NA	NA
AVP90781.1|3094248_3094686_-	hypothetical protein	NA	NA	NA	NA	NA
AVP90782.1|3094748_3095534_-|transposase	IS5/IS1182 family transposase IS5Sb	transposase	NA	NA	NA	NA
AVP90783.1|3095884_3096427_-	DUF4334 domain-containing protein	NA	NA	NA	NA	NA
AVP90784.1|3097228_3098014_+|transposase	IS5/IS1182 family transposase IS5Sb	transposase	NA	NA	NA	NA
AVP90785.1|3098276_3099125_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AVP90786.1|3099112_3099559_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP028094	Synechocystis sp. IPPAS B-1465 chromosome, complete genome	3574310	3227180	3236027	3574310		Paramecium_bursaria_Chlorella_virus(16.67%)	11	NA	NA
AVP90878.1|3227180_3228107_-	ornithine carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	27.7	1.1e-19
AVP90879.1|3228219_3228750_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	2.8e-20
AVP90880.1|3228850_3229216_+	Single-stranded DNA-binding protein 1	NA	A0A291LA01	Bordetella_phage	40.0	1.1e-20
AVP90881.1|3229303_3229534_+	hypothetical protein	NA	NA	NA	NA	NA
AVP90882.1|3229552_3230431_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
AVP90883.1|3230620_3231679_+	photosystem II D2 protein (photosystem q(a) protein)	NA	A0A0M6VW09	Synechococcus_phage	88.7	1.7e-189
AVP90884.1|3231803_3232391_+	ParA family protein	NA	A0A0N7E4H5	Mycobacterium_phage	34.4	1.4e-12
AVP90885.1|3232409_3233720_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AVP90886.1|3233742_3234021_+	UPF0016 domain-containing protein	NA	NA	NA	NA	NA
AVP90887.1|3234017_3234650_-	ATP phosphoribosyltransferase	NA	NA	NA	NA	NA
AVP90888.1|3234656_3236027_-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	32.2	3.8e-32
>prophage 1
CP028097	Synechocystis sp. IPPAS B-1465 plasmid pSYSA, complete sequence	103230	0	2965	103230	transposase,integrase	Acinetobacter_phage(100.0%)	5	292:305	12759:12772
AVP91415.1|181_490_-|transposase	transposase	transposase	NA	NA	NA	NA
292:305	attL	ATGGAAATACTTTT	NA	NA	NA	NA
AVP91416.1|705_1287_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AVP91417.1|1398_1827_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
AVP91418.1|1798_2032_-	DNA-binding protein	NA	NA	NA	NA	NA
AVP91419.1|2398_2965_+|integrase	site-specific integrase	integrase	A0A0P0IKP2	Acinetobacter_phage	25.9	3.9e-07
12759:12772	attR	AAAAGTATTTCCAT	NA	NA	NA	NA
>prophage 2
CP028097	Synechocystis sp. IPPAS B-1465 plasmid pSYSA, complete sequence	103230	26351	28630	103230		Cyanophage(100.0%)	2	NA	NA
AVP91434.1|26351_27608_-	hypothetical protein	NA	H6WG29	Cyanophage	31.3	2.5e-51
AVP91435.1|27604_28630_-	MoxR family ATPase	NA	H6WG28	Cyanophage	46.7	5.1e-82
>prophage 3
CP028097	Synechocystis sp. IPPAS B-1465 plasmid pSYSA, complete sequence	103230	32646	38712	103230		Brucella_phage(50.0%)	8	NA	NA
AVP91443.1|32646_35523_+	DUF3854 domain-containing protein	NA	A0A1L2BX29	Bacteriophage	24.3	5.1e-23
AVP91444.1|35890_36178_-	putative addiction module antidote protein	NA	A0A141GEX5	Brucella_phage	56.3	1.3e-19
AVP91445.1|36188_36479_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	56.2	1.9e-26
AVP91446.1|36596_36848_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
AVP91447.1|36838_37201_+	growth inhibitor PemK	NA	NA	NA	NA	NA
AVP91448.1|37266_37521_-	DUF1819 domain-containing protein	NA	NA	NA	NA	NA
AVP91449.1|37553_38138_-	hypothetical protein	NA	NA	NA	NA	NA
AVP91450.1|38130_38712_-	hypothetical protein	NA	A0A0N7E4H5	Mycobacterium_phage	31.7	6.7e-07
>prophage 4
CP028097	Synechocystis sp. IPPAS B-1465 plasmid pSYSA, complete sequence	103230	41844	42492	103230		Klebsiella_phage(100.0%)	1	NA	NA
AVP91456.1|41844_42492_+	recombinase family protein	NA	A0A286S1P7	Klebsiella_phage	48.7	5.3e-37
>prophage 5
CP028097	Synechocystis sp. IPPAS B-1465 plasmid pSYSA, complete sequence	103230	47528	48242	103230		Microcystis_virus(100.0%)	1	NA	NA
AVP91464.1|47528_48242_+	HNH endonuclease	NA	A0A7G5	Microcystis_virus	33.5	2.0e-13
>prophage 6
CP028097	Synechocystis sp. IPPAS B-1465 plasmid pSYSA, complete sequence	103230	72800	73382	103230		Salmonella_phage(100.0%)	1	NA	NA
AVP91511.1|72800_73382_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	J9Q7H7	Salmonella_phage	34.8	6.7e-07
>prophage 7
CP028097	Synechocystis sp. IPPAS B-1465 plasmid pSYSA, complete sequence	103230	93595	95267	103230		Bacillus_phage(50.0%)	3	NA	NA
AVP91498.1|93595_94111_+	adenylyl-sulfate kinase	NA	A0A218KC56	Bacillus_phage	33.3	1.6e-12
AVP91499.1|94120_94534_+	hypothetical protein	NA	NA	NA	NA	NA
AVP91500.1|94640_95267_+	alpha-ketoglutarate-dependent dioxygenase AlkB	NA	A0A1V0SJ11	Klosneuvirus	39.6	7.7e-17
>prophage 8
CP028097	Synechocystis sp. IPPAS B-1465 plasmid pSYSA, complete sequence	103230	100168	100555	103230		Virus_Rctr197k(100.0%)	1	NA	NA
AVP91506.1|100168_100555_-	exodeoxyribonuclease V subunit alpha	NA	A0A1P8DII4	Virus_Rctr197k	37.3	2.9e-14
>prophage 1
CP028100	Synechocystis sp. IPPAS B-1465 plasmid pSYSX, complete sequence	105272	30622	41580	105272		uncultured_Mediterranean_phage(14.29%)	11	NA	NA
AVP91713.1|30622_30841_+	DNA cytosine methyltransferase	NA	K7XRH7	uncultured_Mediterranean_phage	54.8	1.1e-05
AVP91714.1|31397_31814_+	cytidine deaminase	NA	NA	NA	NA	NA
AVP91715.1|31928_32162_-	hypothetical protein	NA	NA	NA	NA	NA
AVP91716.1|32158_32764_-	ParA family protein	NA	A0A2P1N2C6	Mycobacterium_phage	31.2	6.1e-11
AVP91717.1|33157_33580_+	arsenate reductase ArsI2	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	54.0	8.0e-34
AVP91718.1|33643_33937_+	HNH endonuclease	NA	NA	NA	NA	NA
AVP91719.1|34052_34643_+	DUF305 domain-containing protein	NA	A0A218MND9	uncultured_virus	35.2	1.4e-12
AVP91720.1|34649_35348_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	33.2	1.6e-26
AVP91721.1|35334_36687_+	GHKL domain-containing protein	NA	Q6XLV6	Feldmannia_irregularis_virus	25.0	5.4e-07
AVP91722.1|36750_38388_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVP91723.1|38439_41580_+	CusA/CzcA family heavy metal efflux RND transporter	NA	S5VTK5	Leptospira_phage	24.8	5.2e-77
