The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027848	Staphylococcus muscae strain ATCC 49910 chromosome, complete genome	2095131	41184	49604	2095131		Synechococcus_phage(33.33%)	9	NA	NA
AVQ32697.1|41184_41667_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.7	2.6e-20
AVQ32698.1|41653_42781_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AVQ32699.1|42782_43484_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	42.1	4.7e-47
AVQ32700.1|43487_43748_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AVQ32701.1|43749_44421_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
AVQ32702.1|44413_46603_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.3	4.2e-134
AVQ32703.1|46581_48003_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.8	4.6e-49
AVQ32704.1|48006_49035_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.0	6.9e-63
AVQ32705.1|49037_49604_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.8	8.3e-26
>prophage 2
CP027848	Staphylococcus muscae strain ATCC 49910 chromosome, complete genome	2095131	373224	384568	2095131	tRNA	uncultured_Mediterranean_phage(57.14%)	8	NA	NA
AVQ32980.1|373224_374223_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	9.8e-06
AVQ32981.1|374235_375261_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AVQ32982.1|375278_376418_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.3	1.3e-86
AVQ32983.1|376433_376697_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	45.7	3.0e-07
AVQ32984.1|376921_379201_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	32.7	1.4e-28
AVQ32985.1|379300_381586_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	31.2	1.5e-73
AVQ32986.1|381596_382115_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.2	2.6e-26
AVQ32987.1|382378_384568_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	35.8	5.0e-10
>prophage 3
CP027848	Staphylococcus muscae strain ATCC 49910 chromosome, complete genome	2095131	521520	531446	2095131		Bacillus_phage(42.86%)	11	NA	NA
AVQ33126.1|521520_522408_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	30.2	5.2e-35
AVQ33127.1|522468_522993_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
AVQ33128.1|523087_523822_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	28.8	1.8e-09
AVQ33129.1|523805_524354_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	46.4	1.0e-09
AVQ33130.1|524350_525091_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AVQ33131.1|525315_526041_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	40.9	2.1e-45
AVQ33132.1|526024_527770_+	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	33.9	2.3e-34
AVQ33133.1|528128_528680_+	ECF transporter S component	NA	NA	NA	NA	NA
AVQ33134.1|528778_529027_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	53.3	2.3e-17
AVQ33135.1|529132_530080_+	hypothetical protein	NA	NA	NA	NA	NA
AVQ33136.1|530072_531446_+	ATP-dependent DNA helicase RecQ	NA	A0A0G2Y8K9	Acanthamoeba_polyphaga_mimivirus	33.8	1.4e-55
>prophage 4
CP027848	Staphylococcus muscae strain ATCC 49910 chromosome, complete genome	2095131	722631	729814	2095131	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
AVQ33297.1|722631_723897_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	69.2	6.3e-34
AVQ33298.1|723962_724274_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	61.2	1.4e-27
AVQ33299.1|724287_726699_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	80.8	0.0e+00
AVQ33300.1|727009_728197_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	68.3	5.6e-149
AVQ33301.1|728303_729257_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	81.8	8.9e-65
AVQ33302.1|729253_729814_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	57.3	4.4e-56
>prophage 5
CP027848	Staphylococcus muscae strain ATCC 49910 chromosome, complete genome	2095131	735277	758794	2095131		Staphylococcus_phage(85.71%)	27	NA	NA
AVQ33308.1|735277_736261_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	67.7	1.1e-121
AVQ33309.1|736316_736778_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	67.8	4.5e-54
AVQ33310.1|736793_737975_-	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	64.9	9.4e-149
AVQ33311.1|738004_738634_-	riboflavin synthase subunit alpha	NA	A0A2H4PQS5	Staphylococcus_phage	58.1	7.2e-63
AVQ33312.1|738638_739685_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	53.6	9.0e-111
AVQ33313.1|740231_741719_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	65.0	4.3e-13
AVQ33314.1|742136_743000_-	autolysin	NA	A0A1W6JNR1	Staphylococcus_phage	43.6	2.4e-37
AVQ33315.1|743201_743423_-	hypothetical protein	NA	NA	NA	NA	NA
AVQ33316.1|743613_744087_+	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	38.1	3.9e-21
AVQ33317.1|744098_744539_+	hypothetical protein	NA	NA	NA	NA	NA
AVQ33318.1|744535_744985_-	hypothetical protein	NA	NA	NA	NA	NA
AVQ33319.1|745092_745803_-	transaldolase	NA	M1PR54	Cyanophage	36.0	5.0e-20
AVQ33320.1|745972_746275_+	hypothetical protein	NA	NA	NA	NA	NA
AVQ33321.1|746296_746662_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	55.6	1.1e-28
AVQ33322.1|746658_747009_+	CrcB family protein	NA	NA	NA	NA	NA
AVQ33323.1|747054_747966_-	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	71.6	5.5e-80
AVQ33324.1|748019_749222_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	81.1	5.0e-182
AVQ33325.1|749698_751279_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	75.6	8.2e-241
AVQ33326.1|751361_752132_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	60.0	1.5e-83
AVQ33327.1|752112_752583_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	51.9	2.4e-39
AVQ33328.1|752644_752881_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	72.0	3.7e-28
AVQ33329.1|752871_753864_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	48.6	9.2e-89
AVQ33330.1|753866_755270_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	49.8	1.9e-127
AVQ33331.1|755662_756241_+	hypothetical protein	NA	A0A097BY93	Leuconostoc_phage	54.7	8.8e-07
AVQ33332.1|756511_756697_-	hypothetical protein	NA	A0A1W6JPV9	Staphylococcus_phage	60.0	2.1e-10
AVQ33333.1|757765_758119_+	DUF3969 domain-containing protein	NA	NA	NA	NA	NA
AVQ34567.1|758593_758794_+	hypothetical protein	NA	A0A2H4JAG7	uncultured_Caudovirales_phage	72.9	2.1e-16
>prophage 6
CP027848	Staphylococcus muscae strain ATCC 49910 chromosome, complete genome	2095131	1855671	1863735	2095131		uncultured_Caudovirales_phage(33.33%)	7	NA	NA
AVQ34305.1|1855671_1856721_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.6	8.1e-19
AVQ34306.1|1856798_1857326_+	5'(3')-deoxyribonucleotidase	NA	A0A285PXQ3	Cedratvirus	30.6	1.8e-06
AVQ34307.1|1857442_1858954_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.8	1.1e-69
AVQ34308.1|1859186_1859687_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	69.3	6.5e-51
AVQ34309.1|1859707_1860592_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AVQ34310.1|1861268_1861667_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	67.4	1.9e-45
AVQ34311.1|1861629_1863735_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	85.6	0.0e+00
>prophage 7
CP027848	Staphylococcus muscae strain ATCC 49910 chromosome, complete genome	2095131	1925667	1978718	2095131	holin,portal,tail,protease,transposase,capsid,integrase,terminase,head	Staphylococcus_phage(64.81%)	66	1928905:1928932	1979267:1979294
AVQ34365.1|1925667_1928007_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	36.8	1.6e-86
AVQ34366.1|1928023_1928488_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	90.3	5.6e-73
1928905:1928932	attL	TCAAATCCCGCCGTCTCCACTATATAGC	NA	NA	NA	NA
AVQ34367.1|1928985_1930035_-|integrase	site-specific integrase	integrase	W5R968	Staphylococcus_phage	79.1	1.5e-158
AVQ34368.1|1930155_1931298_-|transposase	transposase	transposase	A0A0P0ICY9	Lactobacillus_phage	52.2	1.4e-101
AVQ34369.1|1931386_1931809_+|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	66.4	1.4e-49
AVQ34370.1|1931895_1932330_-	hypothetical protein	NA	NA	NA	NA	NA
AVQ34371.1|1932674_1933817_-|transposase	transposase	transposase	A0A0P0ICY9	Lactobacillus_phage	52.2	1.4e-101
AVQ34372.1|1933905_1934328_+|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	66.4	1.4e-49
AVQ34373.1|1934345_1934867_-	hypothetical protein	NA	NA	NA	NA	NA
AVQ34374.1|1935157_1935580_-|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	66.4	1.4e-49
AVQ34375.1|1935668_1936811_+|transposase	transposase	transposase	A0A0P0ICY9	Lactobacillus_phage	52.2	1.4e-101
AVQ34376.1|1936858_1937149_-	hypothetical protein	NA	NA	NA	NA	NA
AVQ34377.1|1937154_1937613_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A223LGM3	Staphylococcus_phage	62.3	1.3e-50
AVQ34378.1|1937925_1938555_-	XRE family transcriptional regulator	NA	A0A0N9SKN0	Staphylococcus_phage	90.9	9.3e-103
AVQ34379.1|1938708_1938936_+	XRE family transcriptional regulator	NA	Q4ZCB2	Staphylococcus_virus	96.0	5.1e-35
AVQ34380.1|1938961_1939891_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	69.4	2.5e-80
AVQ34381.1|1939883_1940456_+	hypothetical protein	NA	A0A2H4J1Z3	uncultured_Caudovirales_phage	47.4	1.4e-25
AVQ34382.1|1940467_1940701_+	DUF2829 domain-containing protein	NA	A0A2H4JBS5	uncultured_Caudovirales_phage	47.4	1.1e-11
AVQ34383.1|1940686_1941022_-	hypothetical protein	NA	NA	NA	NA	NA
AVQ34384.1|1941581_1942286_+	phage repressor protein	NA	A0A223LHJ8	Staphylococcus_phage	81.1	2.8e-108
AVQ34385.1|1942412_1942622_+	hypothetical protein	NA	A0A2H4PQR1	Staphylococcus_phage	62.3	1.0e-18
AVQ34386.1|1942637_1942817_+	hypothetical protein	NA	NA	NA	NA	NA
AVQ34387.1|1943037_1943523_+	siphovirus superfamily	NA	A0A1W6JPS5	Staphylococcus_phage	58.1	3.7e-43
AVQ34388.1|1943519_1944164_+	single-stranded DNA-binding protein	NA	D2JGK1	Staphylococcus_phage	90.5	2.3e-104
AVQ34389.1|1944156_1944573_+	single-stranded DNA-binding protein	NA	A0A1J0MFD7	Staphylococcus_phage	72.4	5.4e-51
AVQ34390.1|1944584_1945253_+	hypothetical protein	NA	A0A1J0MFX6	Staphylococcus_phage	88.3	5.0e-115
AVQ34391.1|1945338_1945965_-	hypothetical protein	NA	A0A2H4J7C1	uncultured_Caudovirales_phage	36.7	6.1e-30
AVQ34392.1|1946027_1946741_+	DnaD domain protein	NA	Q4ZC19	Staphylococcus_virus	63.0	4.6e-74
AVQ34393.1|1946745_1947093_+	hypothetical protein	NA	Q4ZC18	Staphylococcus_virus	83.5	1.6e-48
AVQ34394.1|1947085_1948324_+	damage-inducible protein	NA	Q4ZC17	Staphylococcus_virus	81.3	2.8e-188
AVQ34395.1|1948320_1948539_+	hypothetical protein	NA	A0A1J0MFB5	Staphylococcus_phage	65.3	2.2e-19
AVQ34396.1|1948525_1948951_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A1J0MFP7	Staphylococcus_phage	74.8	9.8e-56
AVQ34397.1|1948952_1949633_+	hypothetical protein	NA	NA	NA	NA	NA
AVQ34398.1|1949640_1950054_+	DUF3310 domain-containing protein	NA	A0A1J0MFM3	Staphylococcus_phage	56.6	2.9e-28
AVQ34399.1|1950043_1950262_+	hypothetical protein	NA	NA	NA	NA	NA
AVQ34400.1|1950258_1951656_+	DNA (cytosine-5-)-methyltransferase	NA	A0A0D4DCJ3	Staphylococcus_phage	70.6	1.4e-188
AVQ34401.1|1951648_1951855_+	hypothetical protein	NA	A0A223LFJ6	Staphylococcus_phage	67.3	3.4e-14
AVQ34402.1|1951851_1952466_+	nucleoside 2-deoxyribosyltransferase	NA	A0A2R4P8N5	Staphylococcus_phage	72.5	3.2e-76
AVQ34403.1|1953010_1953394_+	hypothetical protein	NA	A0A2R3ZY10	Staphylococcus_phage	81.1	1.1e-53
AVQ34404.1|1953397_1953883_+	hypothetical protein	NA	NA	NA	NA	NA
AVQ34405.1|1953869_1954235_+	hypothetical protein	NA	NA	NA	NA	NA
AVQ34406.1|1954263_1954674_+	hypothetical protein	NA	A0A0U1ZWJ6	Staphylococcus_phage	45.7	2.4e-14
AVQ34407.1|1954657_1954876_+	hypothetical protein	NA	Q4ZC08	Staphylococcus_virus	50.0	6.4e-11
AVQ34408.1|1954872_1955397_+	dUTP pyrophosphatase	NA	A0A1J0MG68	Staphylococcus_phage	78.2	1.1e-67
AVQ34409.1|1955386_1955752_+	hypothetical protein	NA	NA	NA	NA	NA
AVQ34410.1|1955854_1956076_+	hypothetical protein	NA	A0A060AFB8	Staphylococcus_phage	59.7	3.8e-19
AVQ34411.1|1956080_1956260_+	hypothetical protein	NA	NA	NA	NA	NA
AVQ34412.1|1956275_1956701_+	transcriptional regulator	NA	A0A1J0MFW0	Staphylococcus_phage	85.8	4.1e-62
AVQ34413.1|1956884_1957205_+	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	68.9	2.0e-37
AVQ34414.1|1957322_1957628_+|terminase	phage terminase small subunit P27 family	terminase	A0A2I6PEQ6	Staphylococcus_phage	84.2	1.2e-42
AVQ34415.1|1957617_1959309_+|terminase	terminase large subunit	terminase	A0A2K9VBQ1	Staphylococcus_phage	82.4	1.1e-280
AVQ34416.1|1959316_1960576_+|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	78.1	1.2e-189
AVQ34417.1|1960532_1961306_+|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	70.8	8.5e-98
AVQ34418.1|1961318_1962470_+|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	85.5	1.2e-185
AVQ34419.1|1962566_1962845_+|head,tail	phage gp6-like head-tail connector protein	head,tail	R4WAL3	Staphylococcus_phage	56.5	1.1e-23
AVQ34420.1|1962857_1963196_+	hypothetical protein	NA	NA	NA	NA	NA
AVQ34605.1|1963192_1963615_+	hypothetical protein	NA	A0A2H4JBU3	uncultured_Caudovirales_phage	60.5	3.7e-39
AVQ34421.1|1963611_1964019_+	hypothetical protein	NA	Q4ZD70	Staphylococcus_phage	61.5	1.4e-38
AVQ34422.1|1964030_1964657_+|tail	phage tail protein	tail	Q4ZD69	Staphylococcus_phage	84.5	2.4e-95
AVQ34423.1|1964915_1965278_+	hypothetical protein	NA	A0A2H4J5B3	uncultured_Caudovirales_phage	81.7	1.2e-49
AVQ34424.1|1965528_1971435_+|tail	phage tail tape measure protein	tail	Q4ZD65	Staphylococcus_phage	54.2	8.3e-294
AVQ34425.1|1971434_1972949_+|tail	phage tail protein	tail	A0A1Q1PW27	Staphylococcus_phage	54.8	2.9e-158
AVQ34426.1|1972964_1976711_+	hypothetical protein	NA	A0A1Q1PW30	Staphylococcus_phage	39.1	2.5e-235
AVQ34427.1|1976893_1977199_+	hypothetical protein	NA	A0A1J0MFP4	Staphylococcus_phage	60.9	6.0e-23
AVQ34428.1|1977198_1977690_+|holin	holin	holin	H9A0W5	Staphylococcus_phage	61.9	1.8e-48
AVQ34429.1|1977869_1978718_+	hypothetical protein	NA	M1PRV7	Streptococcus_phage	43.2	1.7e-51
1979267:1979294	attR	TCAAATCCCGCCGTCTCCACTATATAGC	NA	NA	NA	NA
