assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003028855.1_ASM302885v1	CP028324	Massilia sp. ZMN-3 chromosome, complete genome	1	130289-130395	1	CRISPRCasFinder	no		RT,WYL,csa3,DEDDh,DinG,cas3	Orphan	GTGTCCCGTTTTGGGGTCTGACCCCGCGGTGGGACACGGGC	41	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,csa3,DEDDh,DinG,cas3	NA,NA|251aa|down_0|CP028324.1_130405_131158_-	NA|955aa|up_9|CP028324.1_118779_121644_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|207aa|up_8|CP028324.1_121653_122274_-	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway	NA|205aa|up_7|CP028324.1_122472_123087_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|331aa|up_6|CP028324.1_123143_124136_+	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	NA|255aa|up_5|CP028324.1_124268_125033_+	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]	NA|175aa|up_4|CP028324.1_125037_125562_-	sd00045, ANK, ankyrin repeats	NA|285aa|up_3|CP028324.1_125595_126450_-	PRK15319, PRK15319, fibronectin-binding autotransporter adhesin ShdA	NA|127aa|up_2|CP028324.1_126513_126894_-	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins	NA|622aa|up_1|CP028324.1_127053_128919_-	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP)	NA|336aa|up_0|CP028324.1_129276_130284_+	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases	NA|251aa|down_0|CP028324.1_130405_131158_-	NA	NA|162aa|down_1|CP028324.1_131369_131855_+	pfam00710, Asparaginase, Asparaginase, N-terminal	NA|299aa|down_2|CP028324.1_131914_132811_-	PRK00321, rdgC, recombination associated protein; Reviewed	NA|386aa|down_3|CP028324.1_132931_134089_-	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa	NA|370aa|down_4|CP028324.1_134283_135393_+	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|579aa|down_5|CP028324.1_135415_137152_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|306aa|down_6|CP028324.1_137153_138071_-	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain	NA|162aa|down_7|CP028324.1_138857_139343_+	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor	NA|372aa|down_8|CP028324.1_139342_140458_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|531aa|down_9|CP028324.1_140527_142120_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional
GCA_003028855.1_ASM302885v1	CP028324	Massilia sp. ZMN-3 chromosome, complete genome	2	563276-563466	2	CRISPRCasFinder	no		RT,WYL,csa3,DEDDh,DinG,cas3	Orphan	CCGTGTCCCATTTTGGTGACTGACACCGCGGTGGGACACGAACT	44	0	0	NA	NA	NA	2	2	Orphan	RT,WYL,csa3,DEDDh,DinG,cas3	NA|151aa|up_2|CP028324.1_560048_560501_+,NA	NA|303aa|up_9|CP028324.1_553701_554610_+	cd08441, PBP2_MetR, The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold	NA|130aa|up_8|CP028324.1_554666_555056_+	pfam09361, Phasin_2, Phasin protein	NA|393aa|up_7|CP028324.1_555116_556295_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|247aa|up_6|CP028324.1_556381_557122_+	TIGR01829, Acetoacetyl-CoA_reductase, acetoacetyl-CoA reductase	NA|437aa|up_5|CP028324.1_557182_558493_+	cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase	NA|319aa|up_4|CP028324.1_558545_559502_+	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily	NA|151aa|up_3|CP028324.1_559584_560037_+	pfam11026, DUF2721, Protein of unknown function (DUF2721)	NA|151aa|up_2|CP028324.1_560048_560501_+	NA	NA|213aa|up_1|CP028324.1_560501_561140_-	cd08866, SRPBCC_11, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|676aa|up_0|CP028324.1_561227_563255_+	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|570aa|down_0|CP028324.1_563483_565193_-	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	NA|374aa|down_1|CP028324.1_565304_566426_-	PRK07515, PRK07515, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed	NA|477aa|down_2|CP028324.1_566636_568067_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|184aa|down_3|CP028324.1_568387_568939_+	PTZ00146, PTZ00146, fibrillarin; Provisional	NA|737aa|down_4|CP028324.1_569056_571267_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|676aa|down_5|CP028324.1_571303_573331_+	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I	NA|690aa|down_6|CP028324.1_573453_575523_+	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|195aa|down_7|CP028324.1_575814_576399_-	COG3245, CycB, Cytochrome c5 [Energy production and conversion]	NA|223aa|down_8|CP028324.1_577189_577858_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|671aa|down_9|CP028324.1_577841_579854_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS
GCA_003028855.1_ASM302885v1	CP028324	Massilia sp. ZMN-3 chromosome, complete genome	3	802285-802367	3	CRISPRCasFinder	no		RT,WYL,csa3,DEDDh,DinG,cas3	Orphan	GAAAAATCCGGGACTGTCCCGGA	23	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,csa3,DEDDh,DinG,cas3	NA,NA|92aa|down_3|CP028324.1_805024_805300_+,NA|127aa|down_4|CP028324.1_805435_805816_-	NA|171aa|up_9|CP028324.1_794974_795487_-	pfam02861, Clp_N, Clp amino terminal domain, pathogenicity island component	NA|70aa|up_8|CP028324.1_795497_795707_-	pfam13384, HTH_23, Homeodomain-like domain	NA|187aa|up_7|CP028324.1_795838_796399_-	COG2353, COG2353, Uncharacterized conserved protein [Function unknown]	NA|184aa|up_6|CP028324.1_796409_796961_-	pfam04264, YceI, YceI-like domain	NA|180aa|up_5|CP028324.1_796990_797530_-	COG3038, CybB, Cytochrome B561 [Energy production and conversion]	NA|458aa|up_4|CP028324.1_797687_799061_-	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|204aa|up_3|CP028324.1_799223_799835_+	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|322aa|up_2|CP028324.1_799970_800936_+	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	NA|160aa|up_1|CP028324.1_800969_801449_-	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain	NA|227aa|up_0|CP028324.1_801589_802270_+	PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional	NA|74aa|down_0|CP028324.1_802416_802638_-	cd19945, Fer2_BFD, bacterioferritin-associated ferredoxin (BFD) [2Fe-2S]-binding domain	NA|90aa|down_1|CP028324.1_802853_803123_+	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|629aa|down_2|CP028324.1_803127_805014_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|92aa|down_3|CP028324.1_805024_805300_+	NA	NA|127aa|down_4|CP028324.1_805435_805816_-	NA	NA|765aa|down_5|CP028324.1_805902_808197_-	PRK09840, PRK09840, catecholate siderophore receptor Fiu; Provisional	NA|228aa|down_6|CP028324.1_808368_809052_+	cd03189, GST_C_GTT1_like, C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases	NA|258aa|down_7|CP028324.1_809111_809885_+	PRK09482, PRK09482, flap endonuclease-like protein; Provisional	NA|148aa|down_8|CP028324.1_809922_810366_+	cd19925, REC_citrate_TCS, phosphoacceptor receiver (REC) domain of citrate family two-component system response regulators	NA|372aa|down_9|CP028324.1_810345_811461_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
GCA_003028855.1_ASM302885v1	CP028324	Massilia sp. ZMN-3 chromosome, complete genome	4	959219-959308	4	CRISPRCasFinder	no		RT,WYL,csa3,DEDDh,DinG,cas3	Orphan	GGTGTCAGTCACCGCGGTGGGACACG	26	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,csa3,DEDDh,DinG,cas3	NA,NA|81aa|down_3|CP028324.1_965113_965356_+	NA|412aa|up_9|CP028324.1_946903_948139_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|236aa|up_8|CP028324.1_948156_948864_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|499aa|up_7|CP028324.1_948856_950353_+	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|263aa|up_6|CP028324.1_950424_951213_-	pfam02517, Abi, CAAX protease self-immunity	NA|384aa|up_5|CP028324.1_951240_952392_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|255aa|up_4|CP028324.1_952556_953321_+	pfam07722, Peptidase_C26, Peptidase C26	NA|457aa|up_3|CP028324.1_953426_954797_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|470aa|up_2|CP028324.1_954902_956312_+	PRK07480, PRK07480, putative aminotransferase; Validated	NA|488aa|up_1|CP028324.1_956391_957855_-	cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent choline cotransporter CHT and related proteins; solute-binding domain	NA|369aa|up_0|CP028324.1_958002_959109_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|517aa|down_0|CP028324.1_959336_960887_-	cd08154, catalase_clade_1, Clade 1 of the heme-binding enzyme catalase	NA|495aa|down_1|CP028324.1_961049_962534_+	cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like	NA|857aa|down_2|CP028324.1_962544_965115_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|81aa|down_3|CP028324.1_965113_965356_+	NA	NA|152aa|down_4|CP028324.1_965435_965891_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|314aa|down_5|CP028324.1_965972_966914_+	cd08241, QOR1, Quinone oxidoreductase (QOR)	NA|284aa|down_6|CP028324.1_966930_967782_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|116aa|down_7|CP028324.1_967880_968228_-	pfam04342, DMT_6, Putative member of DMT superfamily (DUF486)	NA|159aa|down_8|CP028324.1_968228_968705_-	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)	NA|508aa|down_9|CP028324.1_968713_970237_-	TIGR01942, pcnB, poly(A) polymerase
GCA_003028855.1_ASM302885v1	CP028324	Massilia sp. ZMN-3 chromosome, complete genome	5	1557314-1557425	5	CRISPRCasFinder	no		RT,WYL,csa3,DEDDh,DinG,cas3	Orphan	GGTGACTGACCCCGTGGTGGAACACGAGC	29	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,csa3,DEDDh,DinG,cas3	NA,NA	NA|348aa|up_9|CP028324.1_1549921_1550965_-	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|236aa|up_8|CP028324.1_1551069_1551777_+	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins	NA|275aa|up_7|CP028324.1_1551779_1552604_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|127aa|up_6|CP028324.1_1552600_1552981_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|98aa|up_5|CP028324.1_1553010_1553304_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]	NA|294aa|up_4|CP028324.1_1553485_1554367_-	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase	NA|314aa|up_3|CP028324.1_1554386_1555328_-	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily	NA|164aa|up_2|CP028324.1_1555412_1555904_+	TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II	NA|153aa|up_1|CP028324.1_1555884_1556343_-	COG2323, COG2323, Predicted membrane protein [Function unknown]	NA|262aa|up_0|CP028324.1_1556447_1557233_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|157aa|down_0|CP028324.1_1557438_1557909_-	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|240aa|down_1|CP028324.1_1557925_1558645_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|308aa|down_2|CP028324.1_1558712_1559636_+	TIGR02072, Malonyl-_O-methyltransferase, malonyl-acyl carrier protein O-methyltransferase BioC	NA|413aa|down_3|CP028324.1_1559988_1561227_+	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]	NA|532aa|down_4|CP028324.1_1561240_1562836_+	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I	NA|190aa|down_5|CP028324.1_1563022_1563592_+	PRK05089, PRK05089, cytochrome C oxidase assembly protein; Provisional	NA|67aa|down_6|CP028324.1_1563588_1563789_+	pfam11174, DUF2970, Protein of unknown function (DUF2970)	NA|287aa|down_7|CP028324.1_1563809_1564670_+	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III	NA|67aa|down_8|CP028324.1_1564777_1564978_-	pfam11137, DUF2909, Protein of unknown function (DUF2909)	NA|241aa|down_9|CP028324.1_1565012_1565735_+	cd06662, SURF1, SURF1 superfamily
GCA_003028855.1_ASM302885v1	CP028324	Massilia sp. ZMN-3 chromosome, complete genome	6	1885962-1886083	6	CRISPRCasFinder	no		RT,WYL,csa3,DEDDh,DinG,cas3	Orphan	TCAGAAATGTCCGGGACTGTCCCGGACTTTTCCG	34	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,csa3,DEDDh,DinG,cas3	NA,NA|240aa|down_8|CP028324.1_1897117_1897837_+,NA|69aa|down_9|CP028324.1_1898312_1898519_+	NA|850aa|up_9|CP028324.1_1862753_1865303_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|353aa|up_8|CP028324.1_1865875_1866934_+	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|430aa|up_7|CP028324.1_1866987_1868277_+	pfam05118, Asp_Arg_Hydrox, Aspartyl/Asparaginyl beta-hydroxylase	NA|961aa|up_6|CP028324.1_1868596_1871479_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|948aa|up_5|CP028324.1_1872006_1874850_-	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	NA|924aa|up_4|CP028324.1_1875192_1877964_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|928aa|up_3|CP028324.1_1878371_1881155_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|313aa|up_2|CP028324.1_1881387_1882326_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|338aa|up_1|CP028324.1_1882322_1883336_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|310aa|up_0|CP028324.1_1885028_1885958_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|338aa|down_0|CP028324.1_1886273_1887287_+	PRK00292, glk, glucokinase; Provisional	NA|243aa|down_1|CP028324.1_1887614_1888343_+	COG1386, scpB, Chromosome segregation and condensation protein B [DNA replication, recombination and repair]	NA|647aa|down_2|CP028324.1_1888329_1890270_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|163aa|down_3|CP028324.1_1890631_1891120_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|522aa|down_4|CP028324.1_1891116_1892682_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|963aa|down_5|CP028324.1_1892726_1895615_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|135aa|down_6|CP028324.1_1895706_1896111_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|310aa|down_7|CP028324.1_1896107_1897037_+	PRK01851, truB, tRNA pseudouridine synthase B; Provisional	NA|240aa|down_8|CP028324.1_1897117_1897837_+	NA	NA|69aa|down_9|CP028324.1_1898312_1898519_+	NA
GCA_003028855.1_ASM302885v1	CP028324	Massilia sp. ZMN-3 chromosome, complete genome	7	3193063-3193156	7	CRISPRCasFinder	no		RT,WYL,csa3,DEDDh,DinG,cas3	Orphan	GCCCGTGTCCCACCTCGGGGTCAGTCACC	29	1	1	3193092-3193127	CP028324.1_4333928-4333963	NA	1	1	Orphan	RT,WYL,csa3,DEDDh,DinG,cas3	NA|372aa|up_8|CP028324.1_3181135_3182251_+,NA|161aa|up_7|CP028324.1_3182228_3182711_+,NA	NA|543aa|up_9|CP028324.1_3179349_3180978_-	cd08154, catalase_clade_1, Clade 1 of the heme-binding enzyme catalase	NA|372aa|up_8|CP028324.1_3181135_3182251_+	NA	NA|161aa|up_7|CP028324.1_3182228_3182711_+	NA	NA|742aa|up_6|CP028324.1_3182753_3184979_+	cd14953, NHL_like_1, Uncharacterized NHL-repeat domain in bacterial proteins	NA|290aa|up_5|CP028324.1_3185056_3185926_-	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain	NA|319aa|up_4|CP028324.1_3186033_3186990_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|330aa|up_3|CP028324.1_3187131_3188121_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|296aa|up_2|CP028324.1_3188296_3189184_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|329aa|up_1|CP028324.1_3189180_3190167_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|155aa|up_0|CP028324.1_3192582_3193047_+	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|62aa|down_0|CP028324.1_3194331_3194517_+	pfam09489, CbtB, Probable cobalt transporter subunit (CbtB)	NA|274aa|down_1|CP028324.1_3194507_3195329_+	COG5446, COG5446, Predicted integral membrane protein [Function unknown]	NA|103aa|down_2|CP028324.1_3195369_3195678_+	COG3411, COG3411, Ferredoxin [Energy production and conversion]	NA|1361aa|down_3|CP028324.1_3195674_3199757_+	PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed	NA|233aa|down_4|CP028324.1_3201689_3202388_+	PRK05787, PRK05787, cobalt-precorrin-7 (C(5))-methyltransferase	NA|523aa|down_5|CP028324.1_3202384_3203953_+	pfam02570, CbiC, Precorrin-8X methylmutase	NA|376aa|down_6|CP028324.1_3203939_3205067_+	PRK00075, cbiD, cobalt-precorrin-6A synthase; Reviewed	NA|247aa|down_7|CP028324.1_3205063_3205804_+	TIGR01467, Probable_cobalt-precorrin-2_C20-methyltransferase, precorrin-2 C(20)-methyltransferase	NA|268aa|down_8|CP028324.1_3205814_3206618_+	COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism]	NA|257aa|down_9|CP028324.1_3206614_3207385_+	PRK07027, PRK07027, cobalamin biosynthesis protein CbiG; Provisional
GCA_003028855.1_ASM302885v1	CP028324	Massilia sp. ZMN-3 chromosome, complete genome	8	3837880-3837983	8	CRISPRCasFinder	no	cas3	RT,WYL,csa3,DEDDh,DinG,cas3	Unclear	CCGTTGCAGCGGCCGGGCTCGTGTCCCGTT	30	0	0	NA	NA	NA	1	1	Unclear	RT,WYL,csa3,DEDDh,DinG,cas3	NA|65aa|up_9|CP028324.1_3827509_3827704_+,NA|132aa|up_6|CP028324.1_3830110_3830506_-,NA|114aa|down_3|CP028324.1_3841593_3841935_+,NA|166aa|down_7|CP028324.1_3845830_3846328_-,NA|132aa|down_8|CP028324.1_3849273_3849669_-	NA|65aa|up_9|CP028324.1_3827509_3827704_+	NA	NA|297aa|up_8|CP028324.1_3828541_3829432_-	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase	NA|148aa|up_7|CP028324.1_3829425_3829869_-	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase	NA|132aa|up_6|CP028324.1_3830110_3830506_-	NA	NA|140aa|up_5|CP028324.1_3830772_3831192_+	TIGR02962, Probable_5-hydroxyisourate_hydrolase_R09H10	NA|324aa|up_4|CP028324.1_3831685_3832657_+	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain	NA|145aa|up_3|CP028324.1_3832760_3833195_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|386aa|up_2|CP028324.1_3833475_3834633_-	PRK05101, PRK05101, galactokinase; Provisional	NA|356aa|up_1|CP028324.1_3834645_3835713_-	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase	NA|558aa|up_0|CP028324.1_3835815_3837489_-	cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) and related proteins; solute binding domain	NA|401aa|down_0|CP028324.1_3838041_3839244_-	cd05664, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|387aa|down_1|CP028324.1_3839457_3840618_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|262aa|down_2|CP028324.1_3840587_3841373_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|114aa|down_3|CP028324.1_3841593_3841935_+	NA	NA|212aa|down_4|CP028324.1_3842836_3843472_+	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others	NA|300aa|down_5|CP028324.1_3843574_3844474_-	PRK08869, PRK08869, polar flagellin E	NA|402aa|down_6|CP028324.1_3844634_3845840_-	TIGR04212, conserved_hypothetical_protein, Acinetobacter rhombotarget A	NA|166aa|down_7|CP028324.1_3845830_3846328_-	NA	NA|132aa|down_8|CP028324.1_3849273_3849669_-	NA	cas3|1833aa|down_9|CP028324.1_3849782_3855281_+	COG1201, Lhr, Lhr-like helicases [General function prediction only]
GCA_003028855.1_ASM302885v1	CP028324	Massilia sp. ZMN-3 chromosome, complete genome	9	3920263-3920367	9	CRISPRCasFinder	no		RT,WYL,csa3,DEDDh,DinG,cas3	Orphan	GGTGACTGACCCCGCGGTGGGACACGGGCT	30	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,csa3,DEDDh,DinG,cas3	NA|245aa|up_9|CP028324.1_3905666_3906401_-,NA|233aa|up_8|CP028324.1_3906508_3907207_+,NA|196aa|up_4|CP028324.1_3911351_3911939_+,NA|188aa|up_0|CP028324.1_3916182_3916746_-,NA	NA|245aa|up_9|CP028324.1_3905666_3906401_-	NA	NA|233aa|up_8|CP028324.1_3906508_3907207_+	NA	NA|451aa|up_7|CP028324.1_3907223_3908576_-	cd07732, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|325aa|up_6|CP028324.1_3908689_3909664_+	PRK06139, PRK06139, SDR family oxidoreductase	NA|424aa|up_5|CP028324.1_3909668_3910940_-	cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)	NA|196aa|up_4|CP028324.1_3911351_3911939_+	NA	NA|203aa|up_3|CP028324.1_3911945_3912554_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|981aa|up_2|CP028324.1_3912637_3915580_-	COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism]	NA|141aa|up_1|CP028324.1_3915758_3916181_-	COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism]	NA|188aa|up_0|CP028324.1_3916182_3916746_-	NA	NA|136aa|down_0|CP028324.1_3920381_3920789_-	cd16400, ParB_Srx_like_nuclease, ParB/Srx_like nuclease and putative transcriptional regulators related to SbnI	NA|410aa|down_1|CP028324.1_3920778_3922008_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|622aa|down_2|CP028324.1_3922004_3923870_-	pfam04183, IucA_IucC, IucA / IucC family	NA|379aa|down_3|CP028324.1_3923888_3925025_-	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|346aa|down_4|CP028324.1_3925027_3926065_-	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|447aa|down_5|CP028324.1_3926079_3927420_-	cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA	NA|706aa|down_6|CP028324.1_3927440_3929558_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|379aa|down_7|CP028324.1_3929729_3930866_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|275aa|down_8|CP028324.1_3931048_3931873_+	pfam06629, MipA, MltA-interacting protein MipA	NA|147aa|down_9|CP028324.1_3931874_3932315_-	sd00006, TPR, Tetratricopeptide repeat
GCA_003028855.1_ASM302885v1	CP028324	Massilia sp. ZMN-3 chromosome, complete genome	11	4692259-4692349	11	CRISPRCasFinder	no		RT,WYL,csa3,DEDDh,DinG,cas3	Orphan	GGTGCCTGACCCCGAAGTGGGACACG	26	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,csa3,DEDDh,DinG,cas3	NA,NA|73aa|down_0|CP028324.1_4693005_4693224_-,NA|140aa|down_1|CP028324.1_4693223_4693643_-,NA|73aa|down_3|CP028324.1_4694125_4694344_-,NA|233aa|down_6|CP028324.1_4695634_4696333_-	NA|327aa|up_9|CP028324.1_4680686_4681667_-	COG3434, COG3434, Predicted signal transduction protein containing EAL and modified HD-GYP domains [Signal transduction mechanisms]	NA|316aa|up_8|CP028324.1_4681785_4682733_-	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|218aa|up_7|CP028324.1_4683693_4684347_+	PRK00393, ribA, GTP cyclohydrolase II RibA	NA|456aa|up_6|CP028324.1_4684542_4685910_+	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|328aa|up_5|CP028324.1_4685906_4686890_+	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins	NA|207aa|up_4|CP028324.1_4686929_4687550_+	cd19166, HemeO-bac, heme oxygenase found in pathogenic bacteria	NA|729aa|up_3|CP028324.1_4687546_4689733_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|170aa|up_2|CP028324.1_4689729_4690239_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|185aa|up_1|CP028324.1_4690225_4690780_-	pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term	NA|407aa|up_0|CP028324.1_4690791_4692012_-	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|73aa|down_0|CP028324.1_4693005_4693224_-	NA	NA|140aa|down_1|CP028324.1_4693223_4693643_-	NA	NA|135aa|down_2|CP028324.1_4693709_4694114_-	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins	NA|73aa|down_3|CP028324.1_4694125_4694344_-	NA	NA|170aa|down_4|CP028324.1_4694421_4694931_-	pfam02542, YgbB, YgbB family	NA|236aa|down_5|CP028324.1_4694927_4695635_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|233aa|down_6|CP028324.1_4695634_4696333_-	NA	NA|189aa|down_7|CP028324.1_4696329_4696896_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|105aa|down_8|CP028324.1_4697006_4697321_-	pfam10993, DUF2818, Protein of unknown function (DUF2818)	NA|495aa|down_9|CP028324.1_4697323_4698808_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN
GCA_003028855.1_ASM302885v1	CP028324	Massilia sp. ZMN-3 chromosome, complete genome	12	5265317-5265419	12	CRISPRCasFinder	no		RT,WYL,csa3,DEDDh,DinG,cas3	Orphan	CCCGTGTCCCACCACGGGGTCAGTCACCAA	30	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,csa3,DEDDh,DinG,cas3	NA|96aa|up_8|CP028324.1_5253178_5253466_+,NA	NA|238aa|up_9|CP028324.1_5252031_5252745_-	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|96aa|up_8|CP028324.1_5253178_5253466_+	NA	NA|336aa|up_7|CP028324.1_5253793_5254801_-	cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad	NA|106aa|up_6|CP028324.1_5254854_5255172_-	COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]	NA|221aa|up_5|CP028324.1_5255238_5255901_-	cd07533, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar to Parvibaculum lavamentivorans  HAD-superfamily hydrolase, subfamily IA, variant 1	NA|344aa|up_4|CP028324.1_5255977_5257009_-	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA|1050aa|up_3|CP028324.1_5257711_5260861_+	PRK10811, rne, ribonuclease E; Reviewed	NA|447aa|up_2|CP028324.1_5260919_5262260_+	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family	NA|371aa|up_1|CP028324.1_5262280_5263393_+	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|624aa|up_0|CP028324.1_5263433_5265305_+	cd00887, MoeA, MoeA family	NA|416aa|down_0|CP028324.1_5265433_5266681_-	COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]	NA|133aa|down_1|CP028324.1_5266788_5267187_-	cd14773, TrHb2_PhHbO-like_O, Truncated hemoglobins, group 2 (O); Pseudoalteromonas haloplanktis PhHbO like	NA|427aa|down_2|CP028324.1_5267296_5268577_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|337aa|down_3|CP028324.1_5268573_5269584_+	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains	NA|844aa|down_4|CP028324.1_5269638_5272170_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|338aa|down_5|CP028324.1_5272175_5273189_-	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|641aa|down_6|CP028324.1_5273826_5275749_+	PRK15455, PRK15455, PrkA family serine protein kinase; Provisional	NA|423aa|down_7|CP028324.1_5275847_5277116_+	pfam04285, DUF444, Protein of unknown function (DUF444)	NA|511aa|down_8|CP028324.1_5277121_5278654_+	PRK11767, PRK11767, SpoVR family protein; Provisional	NA|220aa|down_9|CP028324.1_5279401_5280061_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal
GCA_003028855.1_ASM302885v1	CP028324	Massilia sp. ZMN-3 chromosome, complete genome	13	5382040-5382134	13	CRISPRCasFinder	no		RT,WYL,csa3,DEDDh,DinG,cas3	Orphan	TGTCCCACCACGGGGTCAGTCACCAAAACG	30	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,csa3,DEDDh,DinG,cas3	NA|61aa|up_2|CP028324.1_5378872_5379055_+,NA	NA|293aa|up_9|CP028324.1_5370987_5371866_+	cd08477, PBP2_CrgA_like_8, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|212aa|up_8|CP028324.1_5371976_5372612_-	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB	NA|311aa|up_7|CP028324.1_5372708_5373641_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|481aa|up_6|CP028324.1_5373693_5375136_-	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|530aa|up_5|CP028324.1_5375167_5376757_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|407aa|up_4|CP028324.1_5376775_5377996_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|226aa|up_3|CP028324.1_5378099_5378777_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|61aa|up_2|CP028324.1_5378872_5379055_+	NA	NA|441aa|up_1|CP028324.1_5379249_5380572_+	TIGR03356, BGL, beta-galactosidase	NA|449aa|up_0|CP028324.1_5380676_5382023_+	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily	NA|108aa|down_0|CP028324.1_5382311_5382635_-	pfam08803, ydhR, Putative mono-oxygenase ydhR	NA|817aa|down_1|CP028324.1_5382837_5385288_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|559aa|down_2|CP028324.1_5385467_5387144_+	pfam04820, Trp_halogenase, Tryptophan halogenase	NA|343aa|down_3|CP028324.1_5387206_5388235_+	cd06290, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	NA|103aa|down_4|CP028324.1_5388290_5388599_-	pfam06906, DUF1272, Protein of unknown function (DUF1272)	NA|327aa|down_5|CP028324.1_5388675_5389656_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|612aa|down_6|CP028324.1_5389733_5391569_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|560aa|down_7|CP028324.1_5391582_5393262_-	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|899aa|down_8|CP028324.1_5393283_5395980_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|281aa|down_9|CP028324.1_5396274_5397117_+	PRK14189, PRK14189, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
